data_6Y13 # _entry.id 6Y13 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6Y13 pdb_00006y13 10.2210/pdb6y13/pdb WWPDB D_1292106685 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6Y13 _pdbx_database_status.recvd_initial_deposition_date 2020-02-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Baeriswyl, S.' 1 0000-0002-2899-4516 'Stocker, A.' 2 0000-0001-6862-7887 'Reymond, J.-L.' 3 0000-0003-2724-2942 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Rsc Chem Biol' ? ? 2633-0679 ? ? 2 ? 1608 1617 'A mixed chirality alpha-helix in a stapled bicyclic and a linear antimicrobial peptide revealed by X-ray crystallography.' 2021 ? 10.1039/d1cb00124h 34977576 ? ? ? ? ? ? ? ? UK ? ? 1 'Rsc Chem Biol' ? ? 2633-0679 ? ? 2 ? 1608 1617 'A mixed chirality alpha-helix in a stapled bicyclic and a linear antimicrobial peptide revealed by X-ray crystallography.' 2021 ? 10.1039/d1cb00124h 34977576 ? ? ? ? ? ? ? ? UK ? ? 2 'Rsc Chem Biol' ? ? 2633-0679 ? ? 2 ? 1608 1617 'A mixed chirality alpha-helix in a stapled bicyclic and a linear antimicrobial peptide revealed by X-ray crystallography.' 2021 ? 10.1039/d1cb00124h 34977576 ? ? ? ? ? ? ? ? US ? ? 3 Chemrxiv ? ? 2573-2293 ? ? ? ? ? ? 'Mixed chirality alpha-helix in a stapled bicyclic and a linear antimicrobial peptide revealed by X-ray crystallography' 2021 ? 10.26434/chemrxiv.14052293.v1 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baeriswyl, S.' 1 0000-0002-2899-4516 primary 'Personne, H.' 2 0000-0002-2078-0564 primary 'Di Bonaventura, I.' 3 0000-0002-0535-1198 primary 'Kohler, T.' 4 0000-0003-4889-9492 primary 'van Delden, C.' 5 0000-0002-2901-8285 primary 'Stocker, A.' 6 0000-0001-6862-7887 primary 'Javor, S.' 7 0000-0002-0342-3418 primary 'Reymond, J.L.' 8 0000-0003-2724-2942 1 'Baeriswyl, S.' 9 0000-0002-2899-4516 1 'Personne, H.' 10 0000-0002-2078-0564 1 'Di Bonaventura, I.' 11 0000-0002-0535-1198 1 'Kohler, T.' 12 0000-0003-4889-9492 1 'van Delden, C.' 13 0000-0002-2901-8285 1 'Stocker, A.' 14 0000-0001-6862-7887 1 'Javor, S.' 15 0000-0002-0342-3418 1 'Reymond, J.L.' 16 0000-0003-2724-2942 2 'Baeriswyl, S.' 17 0000-0002-2899-4516 2 'Personne, H.' 18 0000-0002-2078-0564 2 'Di Bonaventura, I.' 19 0000-0002-0535-1198 2 'Kohler, T.' 20 0000-0003-4889-9492 2 'van Delden, C.' 21 0000-0002-2901-8285 2 'Stocker, A.' 22 0000-0001-6862-7887 2 'Javor, S.' 23 0000-0002-0342-3418 2 'Reymond, J.L.' 24 0000-0003-2724-2942 3 'Personne, H.' 25 ? 3 'Baeriswyl, S.' 26 0000-0002-2899-4516 3 'Di Bonaventura, I.' 27 ? 3 'Kohler, T.' 28 ? 3 'van Delden, C.' 29 ? 3 'Stocker, A.' 30 0000-0001-6862-7887 3 'Javor, S.' 31 ? 3 'Reymond, J.-L.' 32 0000-0003-2724-2942 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6Y13 _cell.details ? _cell.formula_units_Z ? _cell.length_a 26.856 _cell.length_a_esd ? _cell.length_b 26.856 _cell.length_b_esd ? _cell.length_c 26.156 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description bp70 _entity.formula_weight 1533.839 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'Bicyclic stapled peptide bp70' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(O65)H(ORN)(NLE)Y(DAB)CIRCYA(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XHALYACIRCYAX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 O65 n 1 2 HIS n 1 3 ORN n 1 4 NLE n 1 5 TYR n 1 6 DAB n 1 7 CYS n 1 8 ILE n 1 9 ARG n 1 10 CYS n 1 11 TYR n 1 12 ALA n 1 13 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6Y13 _struct_ref.pdbx_db_accession 6Y13 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6Y13 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 13 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6Y13 _struct_ref_seq.db_align_beg 101 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 113 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 101 _struct_ref_seq.pdbx_auth_seq_align_end 113 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAB 'L-peptide linking' n '2,4-DIAMINOBUTYRIC ACID' ? 'C4 H10 N2 O2' 118.134 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 NLE 'L-peptide linking' n NORLEUCINE ? 'C6 H13 N O2' 131.173 O65 non-polymer . '3,5-bis(hydroxymethyl)-4-methyl-benzaldehyde' ? 'C10 H12 O4' 196.200 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6Y13 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.440 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.6 M AMMONIUM SULFATE, 0.1 M MES MONOHYDRATE PH 6.5, 10% V/V 1,4-DIOXANE, 2% V/V GLYCEROL' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100.000 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details 'COLLIMATING MIRROR (M1), BARTELS MONOCHROMATOR (DCCM), TOROIDAL MIRROR (M2)' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-12-20 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'BARTELS MONOCHROMATOR' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.8000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate 13.083 _reflns.entry_id 6Y13 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.112 _reflns.d_resolution_low 26.16 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7887 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.200 _reflns.pdbx_Rmerge_I_obs 0.354 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 1.24 _reflns.pdbx_netI_over_sigmaI 2.670 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.83 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.367 _reflns.pdbx_Rpim_I_all 0.096 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.977 _reflns.pdbx_CC_star 0.994 _reflns.pdbx_R_split 0.136 # _reflns_shell.d_res_high 1.112 _reflns_shell.d_res_low 1.117 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.790 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 897 _reflns_shell.percent_possible_all 67.200 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.400 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.24 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.163 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 77.470 _refine.B_iso_mean 23.1498 _refine.B_iso_min 6.860 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6Y13 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.112 _refine.ls_d_res_low 26.16 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters 946 _refine.ls_number_reflns_all 4332 _refine.ls_number_reflns_obs 4332 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints 1190 _refine.ls_percent_reflns_obs 95.58 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.1278 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1264 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model XXXX _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.112 _refine_hist.d_res_low 26.16 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 105 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 13 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 105 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.021 ? ? ? s_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.049 ? ? ? s_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.000 ? ? ? s_similar_dist ? ? 'X-RAY DIFFRACTION' ? 0.319 ? ? ? s_from_restr_planes ? ? 'X-RAY DIFFRACTION' ? 0.116 ? ? ? s_zero_chiral_vol ? ? 'X-RAY DIFFRACTION' ? 0.108 ? ? ? s_non_zero_chiral_vol ? ? 'X-RAY DIFFRACTION' ? 0.081 ? ? ? s_anti_bump_dis_restr ? ? 'X-RAY DIFFRACTION' ? 0.000 ? ? ? s_rigid_bond_adp_cmpnt ? ? 'X-RAY DIFFRACTION' ? 0.080 ? ? ? s_similar_adp_cmpnt ? ? 'X-RAY DIFFRACTION' ? 0.000 ? ? ? s_approx_iso_adps ? ? # _struct.entry_id 6Y13 _struct.title 'Bicyclic stapled peptide bp70 at 1.1 Angstrom resolution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6Y13 _struct_keywords.text 'Antimicrobial, Bicyclic, Lectin, ANTIBIOTIC' _struct_keywords.pdbx_keywords ANTIBIOTIC # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id ORN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 3 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 12 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ORN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 103 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 112 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A O65 1 CAJ ? ? ? 1_555 A HIS 2 N ? ? A O65 101 A HIS 102 1_555 ? ? ? ? ? ? ? 1.232 ? ? covale2 covale one ? A O65 1 CAM ? ? ? 1_555 A CYS 7 SG ? ? A O65 101 A CYS 107 1_555 ? ? ? ? ? ? ? 1.811 ? ? covale3 covale one ? A O65 1 CAH ? ? ? 1_555 A CYS 10 SG ? ? A O65 101 A CYS 110 1_555 ? ? ? ? ? ? ? 1.648 ? ? covale4 covale both ? A HIS 2 C ? ? ? 1_555 A ORN 3 N ? ? A HIS 102 A ORN 103 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale5 covale both ? A ORN 3 C ? ? ? 1_555 A NLE 4 N ? ? A ORN 103 A NLE 104 1_555 ? ? ? ? ? ? ? 1.285 ? ? covale6 covale both ? A NLE 4 C ? ? ? 1_555 A TYR 5 N ? ? A NLE 104 A TYR 105 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale7 covale both ? A TYR 5 C ? ? ? 1_555 A DAB 6 N ? ? A TYR 105 A DAB 106 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale8 covale both ? A DAB 6 C ? ? ? 1_555 A CYS 7 N ? ? A DAB 106 A CYS 107 1_555 ? ? ? ? ? ? ? 1.254 ? ? covale9 covale both ? A ALA 12 C ? ? ? 1_555 A NH2 13 N ? ? A ALA 112 A NH2 113 1_555 ? ? ? ? ? ? ? 1.360 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A O65 101 ? 6 'binding site for residue O65 A 101' AC2 Software A ORN 103 ? 7 'binding site for residues ORN A 3 and NLE A 4' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 2 ? HIS A 102 . ? 1_555 ? 2 AC1 6 ORN A 3 ? ORN A 103 . ? 1_555 ? 3 AC1 6 DAB A 6 ? DAB A 106 . ? 1_555 ? 4 AC1 6 CYS A 7 ? CYS A 107 . ? 1_555 ? 5 AC1 6 CYS A 10 ? CYS A 110 . ? 2_445 ? 6 AC1 6 CYS A 10 ? CYS A 110 . ? 1_555 ? 7 AC2 7 HIS A 2 ? HIS A 102 . ? 1_555 ? 8 AC2 7 TYR A 5 ? TYR A 105 . ? 1_555 ? 9 AC2 7 DAB A 6 ? DAB A 106 . ? 1_555 ? 10 AC2 7 CYS A 7 ? CYS A 107 . ? 1_555 ? 11 AC2 7 ILE A 8 ? ILE A 108 . ? 1_555 ? 12 AC2 7 ALA A 12 ? ALA A 112 . ? 3_645 ? 13 AC2 7 O65 A 1 ? O65 A 101 . ? 1_555 ? # _database_PDB_matrix.entry_id 6Y13 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 6Y13 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.037236 _atom_sites.fract_transf_matrix[1][2] 0.021498 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.042996 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.038232 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 O65 1 101 1 O65 DBZ A . n A 1 2 HIS 2 102 2 HIS HIS A . n A 1 3 ORN 3 103 3 ORN ORN A . n A 1 4 NLE 4 104 4 NLE NLE A . n A 1 5 TYR 5 105 5 TYR TYR A . n A 1 6 DAB 6 106 6 DAB DAB A . n A 1 7 CYS 7 107 7 CYS CYS A . n A 1 8 ILE 8 108 8 ILE ILE A . n A 1 9 ARG 9 109 9 ARG ARG A . n A 1 10 CYS 10 110 10 CYS CYS A . n A 1 11 TYR 11 111 11 TYR TYR A . n A 1 12 ALA 12 112 12 ALA ALA A . n A 1 13 NH2 13 113 13 NH2 NH2 A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 100 ? 1 MORE 1 ? 1 'SSA (A^2)' 1420 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-02-17 2 'Structure model' 1 1 2021-03-03 3 'Structure model' 1 2 2022-02-02 4 'Structure model' 2 0 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Polymer sequence' 10 4 'Structure model' 'Source and taxonomy' 11 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' entity 4 2 'Structure model' struct 5 3 'Structure model' citation 6 3 'Structure model' citation_author 7 3 'Structure model' database_2 8 3 'Structure model' refine_hist 9 4 'Structure model' atom_site 10 4 'Structure model' atom_site_anisotrop 11 4 'Structure model' citation 12 4 'Structure model' entity 13 4 'Structure model' entity_poly 14 4 'Structure model' entity_poly_seq 15 4 'Structure model' pdbx_entity_nonpoly 16 4 'Structure model' pdbx_entity_src_syn 17 4 'Structure model' pdbx_nonpoly_scheme 18 4 'Structure model' pdbx_poly_seq_scheme 19 4 'Structure model' pdbx_struct_assembly_gen 20 4 'Structure model' pdbx_validate_rmsd_angle 21 4 'Structure model' struct_asym 22 4 'Structure model' struct_conf 23 4 'Structure model' struct_conn 24 4 'Structure model' struct_ref_seq 25 4 'Structure model' struct_site 26 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_citation.year' 7 2 'Structure model' '_entity.details' 8 2 'Structure model' '_entity.pdbx_description' 9 2 'Structure model' '_struct.pdbx_descriptor' 10 2 'Structure model' '_struct.title' 11 3 'Structure model' '_database_2.pdbx_DOI' 12 3 'Structure model' '_database_2.pdbx_database_accession' 13 3 'Structure model' '_refine_hist.d_res_high' 14 3 'Structure model' '_refine_hist.d_res_low' 15 4 'Structure model' '_atom_site.B_iso_or_equiv' 16 4 'Structure model' '_atom_site.Cartn_x' 17 4 'Structure model' '_atom_site.Cartn_y' 18 4 'Structure model' '_atom_site.Cartn_z' 19 4 'Structure model' '_atom_site.auth_atom_id' 20 4 'Structure model' '_atom_site.auth_comp_id' 21 4 'Structure model' '_atom_site.auth_seq_id' 22 4 'Structure model' '_atom_site.group_PDB' 23 4 'Structure model' '_atom_site.label_asym_id' 24 4 'Structure model' '_atom_site.label_atom_id' 25 4 'Structure model' '_atom_site.label_comp_id' 26 4 'Structure model' '_atom_site.label_entity_id' 27 4 'Structure model' '_atom_site.label_seq_id' 28 4 'Structure model' '_atom_site.type_symbol' 29 4 'Structure model' '_atom_site_anisotrop.U[1][1]' 30 4 'Structure model' '_atom_site_anisotrop.U[1][2]' 31 4 'Structure model' '_atom_site_anisotrop.U[1][3]' 32 4 'Structure model' '_atom_site_anisotrop.U[2][2]' 33 4 'Structure model' '_atom_site_anisotrop.U[2][3]' 34 4 'Structure model' '_atom_site_anisotrop.U[3][3]' 35 4 'Structure model' '_atom_site_anisotrop.id' 36 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 37 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 38 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 39 4 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 40 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 41 4 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 42 4 'Structure model' '_atom_site_anisotrop.pdbx_label_seq_id' 43 4 'Structure model' '_atom_site_anisotrop.type_symbol' 44 4 'Structure model' '_citation.journal_id_ISSN' 45 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 46 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 47 4 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 48 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 49 4 'Structure model' '_pdbx_validate_rmsd_angle.auth_seq_id_1' 50 4 'Structure model' '_pdbx_validate_rmsd_angle.auth_seq_id_2' 51 4 'Structure model' '_pdbx_validate_rmsd_angle.auth_seq_id_3' 52 4 'Structure model' '_struct_conf.beg_auth_seq_id' 53 4 'Structure model' '_struct_conf.beg_label_seq_id' 54 4 'Structure model' '_struct_conf.end_auth_seq_id' 55 4 'Structure model' '_struct_conf.end_label_seq_id' 56 4 'Structure model' '_struct_conn.pdbx_dist_value' 57 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 58 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 59 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 60 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 61 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 62 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 63 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 64 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 65 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 66 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 67 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 68 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 69 4 'Structure model' '_struct_ref_seq.db_align_beg' 70 4 'Structure model' '_struct_ref_seq.db_align_end' 71 4 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_beg' 72 4 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_end' 73 4 'Structure model' '_struct_ref_seq.seq_align_end' 74 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 75 4 'Structure model' '_struct_site_gen.auth_seq_id' 76 4 'Structure model' '_struct_site_gen.label_asym_id' 77 4 'Structure model' '_struct_site_gen.label_seq_id' # _pdbx_phasing_MR.entry_id 6Y13 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.180 _pdbx_phasing_MR.d_res_low_rotation 26.160 _pdbx_phasing_MR.d_res_high_translation 2.180 _pdbx_phasing_MR.d_res_low_translation 26.160 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk 'Thu Oct 27 01:15:02 2016 (svn 7793) (git 6847, 75ff0fc... )' ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program 2.7.16 3 ? refinement ? ? 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de ? ? ? ? Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ ? SHELX ? ? package . 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Apr. 1, 2019' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.25 5 # _pdbx_entry_details.entry_id 6Y13 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A TYR 105 ? ? CG A TYR 105 ? ? CD1 A TYR 105 ? ? 115.31 121.00 -5.69 0.60 N 2 1 CA A DAB 106 ? ? C A DAB 106 ? ? N A CYS 107 ? ? 133.89 117.20 16.69 2.20 Y 3 1 CD A ARG 109 ? ? NE A ARG 109 ? ? CZ A ARG 109 ? ? 132.51 123.60 8.91 1.40 N 4 1 NE A ARG 109 ? ? CZ A ARG 109 ? ? NH1 A ARG 109 ? ? 115.62 120.30 -4.68 0.50 N 5 1 CA A CYS 110 ? ? CB A CYS 110 ? ? SG A CYS 110 ? ? 122.57 114.20 8.37 1.10 N 6 1 CB A TYR 111 ? ? CG A TYR 111 ? ? CD2 A TYR 111 ? ? 124.96 121.00 3.96 0.60 N # _pdbx_audit_support.funding_organization 'Swiss National Science Foundation' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 DAB ? ? DAB ? ? 'SUBJECT OF INVESTIGATION' ? 2 O65 ? ? O65 ? ? 'SUBJECT OF INVESTIGATION' ? 3 NH2 ? ? NH2 ? ? 'SUBJECT OF INVESTIGATION' ? 4 NLE ? ? NLE ? ? 'SUBJECT OF INVESTIGATION' ? 5 ORN ? ? ORN ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #