HEADER OXIDOREDUCTASE 18-MAR-20 6YCL TITLE CRYSTAL STRUCTURE OF GCOA T296G BOUND TO P-VANILLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AROMATIC O-DEMETHYLASE, CYTOCHROME P450 SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.14.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS SP. (STRAIN ATCC 39116 / 75IV2); SOURCE 3 ORGANISM_TAXID: 385957; SOURCE 4 ATCC: 39116; SOURCE 5 GENE: GCOA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA II KEYWDS AROMATIC CATABOLISM, CYTOCHROME P450, LIGNIN VALORIZATION, PROTEIN KEYWDS 2 ENGINEERING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.HINCHEN,S.J.B.MALLINSON,M.D.ALLEN,E.S.ELLIS,G.T.BECKHAM, AUTHOR 2 J.L.DUBOIS,J.E.MCGEEHAN REVDAT 3 24-JAN-24 6YCL 1 REMARK REVDAT 2 29-SEP-21 6YCL 1 JRNL REMARK REVDAT 1 17-FEB-21 6YCL 0 JRNL AUTH E.S.ELLIS,D.J.HINCHEN,A.BLEEM,L.BU,S.J.B.MALLINSON, JRNL AUTH 2 M.D.ALLEN,B.R.STREIT,M.M.MACHOVINA,Q.V.DOOLIN,W.E.MICHENER, JRNL AUTH 3 C.W.JOHNSON,B.C.KNOTT,G.T.BECKHAM,J.E.MCGEEHAN,J.L.DUBOIS JRNL TITL ENGINEERING A CYTOCHROME P450 FOR DEMETHYLATION OF JRNL TITL 2 LIGNIN-DERIVED AROMATIC ALDEHYDES. JRNL REF JACS AU V. 1 252 2021 JRNL REFN ESSN 2691-3704 JRNL PMID 34467290 JRNL DOI 10.1021/JACSAU.0C00103 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 70762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5200 - 4.9700 1.00 2929 165 0.1750 0.1762 REMARK 3 2 4.9700 - 3.9500 1.00 2790 146 0.1230 0.1516 REMARK 3 3 3.9500 - 3.4500 1.00 2767 128 0.1272 0.1616 REMARK 3 4 3.4500 - 3.1300 1.00 2732 128 0.1578 0.1624 REMARK 3 5 3.1300 - 2.9100 1.00 2702 164 0.1775 0.1846 REMARK 3 6 2.9100 - 2.7400 1.00 2711 132 0.1750 0.1905 REMARK 3 7 2.7400 - 2.6000 1.00 2697 140 0.1770 0.1845 REMARK 3 8 2.6000 - 2.4900 1.00 2687 147 0.1670 0.1903 REMARK 3 9 2.4900 - 2.3900 1.00 2706 132 0.1675 0.1900 REMARK 3 10 2.3900 - 2.3100 1.00 2672 147 0.1629 0.1812 REMARK 3 11 2.3100 - 2.2400 1.00 2657 167 0.1664 0.1730 REMARK 3 12 2.2400 - 2.1700 1.00 2655 143 0.1718 0.1826 REMARK 3 13 2.1700 - 2.1100 1.00 2654 149 0.1727 0.1959 REMARK 3 14 2.1100 - 2.0600 1.00 2672 152 0.1831 0.2229 REMARK 3 15 2.0600 - 2.0200 1.00 2668 136 0.1872 0.2518 REMARK 3 16 2.0200 - 1.9700 1.00 2672 127 0.1982 0.2159 REMARK 3 17 1.9700 - 1.9300 1.00 2656 155 0.1955 0.2262 REMARK 3 18 1.9300 - 1.9000 1.00 2662 127 0.2047 0.2574 REMARK 3 19 1.9000 - 1.8600 1.00 2650 126 0.2081 0.3040 REMARK 3 20 1.8600 - 1.8300 1.00 2677 139 0.2159 0.2243 REMARK 3 21 1.8300 - 1.8000 1.00 2608 170 0.2139 0.2379 REMARK 3 22 1.8000 - 1.7700 1.00 2691 118 0.2269 0.2268 REMARK 3 23 1.7700 - 1.7500 1.00 2665 124 0.2481 0.2525 REMARK 3 24 1.7500 - 1.7200 1.00 2655 122 0.2598 0.2774 REMARK 3 25 1.7200 - 1.7000 0.99 2619 147 0.2838 0.3283 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.173 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.453 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3333 REMARK 3 ANGLE : 1.013 4571 REMARK 3 CHIRALITY : 0.062 478 REMARK 3 PLANARITY : 0.008 605 REMARK 3 DIHEDRAL : 14.328 1947 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YCL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97955 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70785 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16960 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA MALONATE, HEPES, P-VANILLIN., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.43500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.01050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.01050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.65250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.01050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.01050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.21750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.01050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.01050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.65250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.01050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.01050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.21750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.43500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NH2 ARG A 385 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 622 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 22 O HOH A 602 1.17 REMARK 500 HD22 ASN A 182 O HOH A 603 1.45 REMARK 500 HH TYR A 25 O HOH A 605 1.46 REMARK 500 HH22 ARG A 280 O HOH A 606 1.50 REMARK 500 HH TYR A 240 O HOH A 612 1.59 REMARK 500 OE1 GLN A 191 O HOH A 601 1.95 REMARK 500 O HOH A 938 O HOH A 943 1.96 REMARK 500 NH2 ARG A 22 O HOH A 602 2.01 REMARK 500 ND2 ASN A 182 O HOH A 603 2.03 REMARK 500 OE2 GLU A 64 O HOH A 604 2.12 REMARK 500 O HOH A 620 O HOH A 895 2.18 REMARK 500 OH TYR A 25 O HOH A 605 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 385 HH21 ARG A 385 8554 0.86 REMARK 500 NH2 ARG A 385 HH22 ARG A 385 8554 0.89 REMARK 500 HH22 ARG A 385 HH22 ARG A 385 8554 1.17 REMARK 500 HH21 ARG A 385 HH22 ARG A 385 8554 1.31 REMARK 500 CZ ARG A 385 NH2 ARG A 385 8554 1.35 REMARK 500 O HOH A 763 O HOH A 871 7555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 385 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 35 83.95 -160.41 REMARK 500 PHE A 123 -1.49 -145.13 REMARK 500 TYR A 135 -60.36 -139.88 REMARK 500 LEU A 150 39.36 -99.26 REMARK 500 LEU A 244 -86.72 -94.78 REMARK 500 SER A 294 53.12 -156.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 385 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 356 SG REMARK 620 2 HEM A 502 NA 100.9 REMARK 620 3 HEM A 502 NB 99.1 89.7 REMARK 620 4 HEM A 502 NC 95.8 163.3 87.8 REMARK 620 5 HEM A 502 ND 102.7 88.7 158.1 87.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V55 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 502 DBREF 6YCL A 1 407 UNP P0DPQ7 GCOA_AMYS7 1 407 SEQADV 6YCL GLY A -1 UNP P0DPQ7 EXPRESSION TAG SEQADV 6YCL PRO A 0 UNP P0DPQ7 EXPRESSION TAG SEQADV 6YCL GLY A 296 UNP P0DPQ7 THR 296 ENGINEERED MUTATION SEQRES 1 A 409 GLY PRO MET THR THR THR GLU ARG PRO ASP LEU ALA TRP SEQRES 2 A 409 LEU ASP GLU VAL THR MET THR GLN LEU GLU ARG ASN PRO SEQRES 3 A 409 TYR GLU VAL TYR GLU ARG LEU ARG ALA GLU ALA PRO LEU SEQRES 4 A 409 ALA PHE VAL PRO VAL LEU GLY SER TYR VAL ALA SER THR SEQRES 5 A 409 ALA GLU VAL CYS ARG GLU VAL ALA THR SER PRO ASP PHE SEQRES 6 A 409 GLU ALA VAL ILE THR PRO ALA GLY GLY ARG THR PHE GLY SEQRES 7 A 409 HIS PRO ALA ILE ILE GLY VAL ASN GLY ASP ILE HIS ALA SEQRES 8 A 409 ASP LEU ARG SER MET VAL GLU PRO ALA LEU GLN PRO ALA SEQRES 9 A 409 GLU VAL ASP ARG TRP ILE ASP ASP LEU VAL ARG PRO ILE SEQRES 10 A 409 ALA ARG ARG TYR LEU GLU ARG PHE GLU ASN ASP GLY HIS SEQRES 11 A 409 ALA GLU LEU VAL ALA GLN TYR CYS GLU PRO VAL SER VAL SEQRES 12 A 409 ARG SER LEU GLY ASP LEU LEU GLY LEU GLN GLU VAL ASP SEQRES 13 A 409 SER ASP LYS LEU ARG GLU TRP PHE ALA LYS LEU ASN ARG SEQRES 14 A 409 SER PHE THR ASN ALA ALA VAL ASP GLU ASN GLY GLU PHE SEQRES 15 A 409 ALA ASN PRO GLU GLY PHE ALA GLU GLY ASP GLN ALA LYS SEQRES 16 A 409 ALA GLU ILE ARG ALA VAL VAL ASP PRO LEU ILE ASP LYS SEQRES 17 A 409 TRP ILE GLU HIS PRO ASP ASP SER ALA ILE SER HIS TRP SEQRES 18 A 409 LEU HIS ASP GLY MET PRO PRO GLY GLN THR ARG ASP ARG SEQRES 19 A 409 GLU TYR ILE TYR PRO THR ILE TYR VAL TYR LEU LEU GLY SEQRES 20 A 409 ALA MET GLN GLU PRO GLY HIS GLY MET ALA SER THR LEU SEQRES 21 A 409 VAL GLY LEU PHE SER ARG PRO GLU GLN LEU GLU GLU VAL SEQRES 22 A 409 VAL ASP ASP PRO THR LEU ILE PRO ARG ALA ILE ALA GLU SEQRES 23 A 409 GLY LEU ARG TRP THR SER PRO ILE TRP SER ALA GLY ALA SEQRES 24 A 409 ARG ILE SER THR LYS PRO VAL THR ILE ALA GLY VAL ASP SEQRES 25 A 409 LEU PRO ALA GLY THR PRO VAL MET LEU SER TYR GLY SER SEQRES 26 A 409 ALA ASN HIS ASP THR GLY LYS TYR GLU ALA PRO SER GLN SEQRES 27 A 409 TYR ASP LEU HIS ARG PRO PRO LEU PRO HIS LEU ALA PHE SEQRES 28 A 409 GLY ALA GLY ASN HIS ALA CYS ALA GLY ILE TYR PHE ALA SEQRES 29 A 409 ASN HIS VAL MET ARG ILE ALA LEU GLU GLU LEU PHE GLU SEQRES 30 A 409 ALA ILE PRO ASN LEU GLU ARG ASP THR ARG GLU GLY VAL SEQRES 31 A 409 GLU PHE TRP GLY TRP GLY PHE ARG GLY PRO THR SER LEU SEQRES 32 A 409 HIS VAL THR TRP GLU VAL HET V55 A 501 19 HET HEM A 502 73 HETNAM V55 4-HYDROXY-3-METHOXYBENZALDEHYDE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN V55 P-VANILLIN HETSYN HEM HEME FORMUL 2 V55 C8 H8 O3 FORMUL 3 HEM C34 H32 FE N4 O4 FORMUL 4 HOH *344(H2 O) HELIX 1 AA1 ARG A 6 VAL A 15 5 10 HELIX 2 AA2 THR A 16 ASN A 23 1 8 HELIX 3 AA3 PRO A 24 ALA A 35 1 12 HELIX 4 AA4 THR A 50 SER A 60 1 11 HELIX 5 AA5 THR A 68 GLY A 76 1 9 HELIX 6 AA6 ALA A 79 VAL A 83 5 5 HELIX 7 AA7 ASN A 84 GLU A 96 1 13 HELIX 8 AA8 PRO A 97 LEU A 99 5 3 HELIX 9 AA9 GLN A 100 GLU A 121 1 22 HELIX 10 AB1 LEU A 131 TYR A 135 1 5 HELIX 11 AB2 TYR A 135 GLY A 149 1 15 HELIX 12 AB3 ASP A 154 THR A 170 1 17 HELIX 13 AB4 ASN A 182 GLY A 185 5 4 HELIX 14 AB5 PHE A 186 HIS A 210 1 25 HELIX 15 AB6 SER A 214 ASP A 222 1 9 HELIX 16 AB7 ASP A 231 SER A 263 1 33 HELIX 17 AB8 ARG A 264 ASP A 274 1 11 HELIX 18 AB9 LEU A 277 THR A 289 1 13 HELIX 19 AC1 SER A 320 ASN A 325 1 6 HELIX 20 AC2 ALA A 351 ALA A 355 5 5 HELIX 21 AC3 GLY A 358 ILE A 377 1 20 SHEET 1 AA1 5 LEU A 37 VAL A 40 0 SHEET 2 AA1 5 SER A 45 ALA A 48 -1 O SER A 45 N VAL A 40 SHEET 3 AA1 5 PRO A 316 LEU A 319 1 O MET A 318 N ALA A 48 SHEET 4 AA1 5 GLY A 296 SER A 300 -1 N ARG A 298 O VAL A 317 SHEET 5 AA1 5 PHE A 63 VAL A 66 -1 N GLU A 64 O ILE A 299 SHEET 1 AA2 3 HIS A 128 GLU A 130 0 SHEET 2 AA2 3 HIS A 402 THR A 404 -1 O VAL A 403 N ALA A 129 SHEET 3 AA2 3 GLU A 381 ARG A 382 -1 N GLU A 381 O THR A 404 SHEET 1 AA3 2 VAL A 304 ILE A 306 0 SHEET 2 AA3 2 VAL A 309 LEU A 311 -1 O LEU A 311 N VAL A 304 SHEET 1 AA4 2 PHE A 390 TRP A 391 0 SHEET 2 AA4 2 GLY A 397 PRO A 398 -1 O GLY A 397 N TRP A 391 LINK SG CYS A 356 FE HEM A 502 1555 1555 2.37 CISPEP 1 HIS A 77 PRO A 78 0 -1.16 SITE 1 AC1 9 VAL A 241 LEU A 244 GLY A 245 ALA A 246 SITE 2 AC1 9 ILE A 292 ALA A 295 GLY A 296 HEM A 502 SITE 3 AC1 9 HOH A 783 SITE 1 AC2 22 ILE A 80 ILE A 81 HIS A 88 ARG A 92 SITE 2 AC2 22 LEU A 99 TYR A 242 ALA A 246 GLU A 249 SITE 3 AC2 22 ILE A 292 ARG A 298 TYR A 321 ALA A 348 SITE 4 AC2 22 PHE A 349 GLY A 350 ALA A 351 HIS A 354 SITE 5 AC2 22 CYS A 356 MET A 366 V55 A 501 HOH A 765 SITE 6 AC2 22 HOH A 783 HOH A 837 CRYST1 104.021 104.021 116.870 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008557 0.00000