data_6YJD # _entry.id 6YJD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6YJD WWPDB D_1292107473 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6YJD _pdbx_database_status.recvd_initial_deposition_date 2020-04-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lilina, A.V.' 1 0000-0002-0218-9607 'Stalmans, G.' 2 0000-0001-6570-6328 'Strelkov, S.V.' 3 0000-0001-7189-4652 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cells _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2073-4409 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Addressing the Molecular Mechanism of Longitudinal Lamin Assembly Using Chimeric Fusions.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/cells9071633 _citation.pdbx_database_id_PubMed 32645958 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stalmans, G.' 1 0000-0001-6570-6328 primary 'Lilina, A.V.' 2 0000-0002-0218-9607 primary 'Vermeire, P.J.' 3 ? primary 'Fiala, J.' 4 ? primary 'Novak, P.' 5 0000-0001-8688-529X primary 'Strelkov, S.V.' 6 0000-0001-7189-4652 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6YJD _cell.details ? _cell.formula_units_Z ? _cell.length_a 117.250 _cell.length_a_esd ? _cell.length_b 117.250 _cell.length_b_esd ? _cell.length_c 93.156 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Capsid assembly scaffolding protein,Prelamin-A/C' 14894.788 1 ? F40C ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 2 ? ? ? ? 5 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Gene product 7,gp7,Head morphogenesis protein,Protein p7,Scaffold protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GMPLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSCVSEYNDLTKSLARERDTSRRLLAEKEREMAEMRARMQQQL DEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRAS ; _entity_poly.pdbx_seq_one_letter_code_can ;GMPLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSCVSEYNDLTKSLARERDTSRRLLAEKEREMAEMRARMQQQL DEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRAS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 PRO n 1 4 LEU n 1 5 LYS n 1 6 PRO n 1 7 GLU n 1 8 GLU n 1 9 HIS n 1 10 GLU n 1 11 ASP n 1 12 ILE n 1 13 LEU n 1 14 ASN n 1 15 LYS n 1 16 LEU n 1 17 LEU n 1 18 ASP n 1 19 PRO n 1 20 GLU n 1 21 LEU n 1 22 ALA n 1 23 GLN n 1 24 SER n 1 25 GLU n 1 26 ARG n 1 27 THR n 1 28 GLU n 1 29 ALA n 1 30 LEU n 1 31 GLN n 1 32 GLN n 1 33 LEU n 1 34 ARG n 1 35 VAL n 1 36 ASN n 1 37 TYR n 1 38 GLY n 1 39 SER n 1 40 CYS n 1 41 VAL n 1 42 SER n 1 43 GLU n 1 44 TYR n 1 45 ASN n 1 46 ASP n 1 47 LEU n 1 48 THR n 1 49 LYS n 1 50 SER n 1 51 LEU n 1 52 ALA n 1 53 ARG n 1 54 GLU n 1 55 ARG n 1 56 ASP n 1 57 THR n 1 58 SER n 1 59 ARG n 1 60 ARG n 1 61 LEU n 1 62 LEU n 1 63 ALA n 1 64 GLU n 1 65 LYS n 1 66 GLU n 1 67 ARG n 1 68 GLU n 1 69 MET n 1 70 ALA n 1 71 GLU n 1 72 MET n 1 73 ARG n 1 74 ALA n 1 75 ARG n 1 76 MET n 1 77 GLN n 1 78 GLN n 1 79 GLN n 1 80 LEU n 1 81 ASP n 1 82 GLU n 1 83 TYR n 1 84 GLN n 1 85 GLU n 1 86 LEU n 1 87 LEU n 1 88 ASP n 1 89 ILE n 1 90 LYS n 1 91 LEU n 1 92 ALA n 1 93 LEU n 1 94 ASP n 1 95 MET n 1 96 GLU n 1 97 ILE n 1 98 HIS n 1 99 ALA n 1 100 TYR n 1 101 ARG n 1 102 LYS n 1 103 LEU n 1 104 LEU n 1 105 GLU n 1 106 GLY n 1 107 GLU n 1 108 GLU n 1 109 GLU n 1 110 ARG n 1 111 LEU n 1 112 ARG n 1 113 LEU n 1 114 SER n 1 115 PRO n 1 116 SER n 1 117 PRO n 1 118 THR n 1 119 SER n 1 120 GLN n 1 121 ARG n 1 122 SER n 1 123 ARG n 1 124 GLY n 1 125 ARG n 1 126 ALA n 1 127 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 49 ? ? ? ? ? ? ? ? ? 'Bacillus phage phi29' 10756 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 50 127 Human ? 'LMNA, LMN1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SCAF_BPPH2 P13848 ? 1 MPLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTK 1 2 UNP LMNA_HUMAN P02545 P02545-2 1 SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRAS 326 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6YJD A 2 ? 49 ? P13848 1 ? 48 ? 278 325 2 2 6YJD A 50 ? 127 ? P02545 326 ? 403 ? 326 403 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6YJD GLY A 1 ? UNP P13848 ? ? 'expression tag' 277 1 1 6YJD CYS A 40 ? UNP P13848 PHE 39 'engineered mutation' 316 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6YJD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 6.21 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 80.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.2 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '35% (v/v) methanol, 0.2 M MgCl2 and 0.1 M HEPES' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-02-15 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.978565 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.978565 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate 110.62 _reflns.entry_id 6YJD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.9 _reflns.d_resolution_low 44.62 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8792 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.28 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.27 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.0 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.99 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 847 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.934 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 3.572 _refine.aniso_B[1][2] 1.786 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] 3.572 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -11.586 _refine.B_iso_max ? _refine.B_iso_mean 115.019 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.899 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6YJD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9 _refine.ls_d_res_low 44.62 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8791 _refine.ls_number_reflns_R_free 841 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.750 _refine.ls_percent_reflns_R_free 9.567 _refine.ls_R_factor_all 0.258 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.3042 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2533 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.327 _refine.pdbx_overall_ESU_R_Free 0.298 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 14.152 _refine.overall_SU_ML 0.251 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.9 _refine_hist.d_res_low 44.62 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 844 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 823 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.013 846 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.017 781 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.761 1.651 1136 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.391 1.590 1808 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 4.230 5.000 103 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 32.964 22.692 52 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 19.741 15.000 160 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 15.216 15.000 8 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.084 0.200 109 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.020 936 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 160 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.233 0.200 205 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.182 0.200 621 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.155 0.200 400 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.088 0.200 395 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.158 0.200 24 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.113 0.200 1 ? r_symmetry_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.197 0.200 16 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.330 0.200 61 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.020 0.200 1 ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.217 0.200 8 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 9.868 12.122 417 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 9.838 12.100 414 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 12.290 18.092 517 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 12.279 18.104 518 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 14.654 13.305 427 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 14.640 13.306 428 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 19.420 19.484 619 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 19.405 19.492 620 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 19.464 143.836 941 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 19.466 143.900 942 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.900 2.975 . . 66 550 99.0354 . . . 0.376 . 0.448 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.975 3.057 . . 63 560 100.0000 . . . 0.362 . 0.375 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.057 3.145 . . 54 542 99.8325 . . . 0.334 . 0.326 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.145 3.242 . . 48 531 99.8276 . . . 0.287 . 0.315 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.242 3.348 . . 54 518 100.0000 . . . 0.223 . 0.243 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.348 3.466 . . 61 488 99.8182 . . . 0.218 . 0.230 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.466 3.596 . . 62 467 100.0000 . . . 0.201 . 0.238 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.596 3.743 . . 47 467 99.4197 . . . 0.289 . 0.219 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.743 3.909 . . 54 445 99.4024 . . . 0.259 . 0.212 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.909 4.100 . . 36 430 100.0000 . . . 0.296 . 0.239 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.100 4.321 . . 40 416 100.0000 . . . 0.329 . 0.240 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.321 4.582 . . 41 393 100.0000 . . . 0.277 . 0.227 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.582 4.898 . . 33 378 100.0000 . . . 0.302 . 0.228 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.898 5.290 . . 31 346 100.0000 . . . 0.408 . 0.295 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.290 5.793 . . 31 329 100.0000 . . . 0.349 . 0.346 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.793 6.474 . . 34 293 99.6951 . . . 0.335 . 0.289 . . . . . . . . . . . 'X-RAY DIFFRACTION' 6.474 7.470 . . 31 261 100.0000 . . . 0.239 . 0.237 . . . . . . . . . . . # _struct.entry_id 6YJD _struct.title 'Lamin A coil2 dimer stabilized by N-terminal capping' _struct.pdbx_descriptor 'Capsid assembly scaffolding protein,Prelamin-A/C' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6YJD _struct_keywords.text 'intermediate filaments, lamin, coiled-coil, NUCLEAR PROTEIN' _struct_keywords.pdbx_keywords 'NUCLEAR PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 5 ? ASP A 18 ? LYS A 281 ASP A 294 1 ? 14 HELX_P HELX_P2 AA2 ALA A 22 ? LEU A 104 ? ALA A 298 LEU A 380 1 ? 83 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 40 SG ? ? ? 1_555 A CYS 40 SG ? ? A CYS 316 A CYS 316 11_454 ? ? ? ? ? ? ? 2.063 ? ? metalc1 metalc ? ? A HIS 9 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 285 A NI 501 1_555 ? ? ? ? ? ? ? 2.515 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _atom_sites.entry_id 6YJD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.008529 _atom_sites.fract_transf_matrix[1][2] 0.004924 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009848 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010735 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CL ? ? 9.50761 7.44341 ? ? 1.04373 23.83732 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NI ? ? 22.93579 4.97432 ? ? 2.39430 34.99046 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 277 ? ? ? A . n A 1 2 MET 2 278 278 MET MET A . n A 1 3 PRO 3 279 279 PRO PRO A . n A 1 4 LEU 4 280 280 LEU LEU A . n A 1 5 LYS 5 281 281 LYS LYS A . n A 1 6 PRO 6 282 282 PRO PRO A . n A 1 7 GLU 7 283 283 GLU GLU A . n A 1 8 GLU 8 284 284 GLU GLU A . n A 1 9 HIS 9 285 285 HIS HIS A . n A 1 10 GLU 10 286 286 GLU GLU A . n A 1 11 ASP 11 287 287 ASP ASP A . n A 1 12 ILE 12 288 288 ILE ILE A . n A 1 13 LEU 13 289 289 LEU LEU A . n A 1 14 ASN 14 290 290 ASN ASN A . n A 1 15 LYS 15 291 291 LYS LYS A . n A 1 16 LEU 16 292 292 LEU LEU A . n A 1 17 LEU 17 293 293 LEU LEU A . n A 1 18 ASP 18 294 294 ASP ASP A . n A 1 19 PRO 19 295 295 PRO PRO A . n A 1 20 GLU 20 296 296 GLU GLU A . n A 1 21 LEU 21 297 297 LEU LEU A . n A 1 22 ALA 22 298 298 ALA ALA A . n A 1 23 GLN 23 299 299 GLN GLN A . n A 1 24 SER 24 300 300 SER SER A . n A 1 25 GLU 25 301 301 GLU GLU A . n A 1 26 ARG 26 302 302 ARG ARG A . n A 1 27 THR 27 303 303 THR THR A . n A 1 28 GLU 28 304 304 GLU GLU A . n A 1 29 ALA 29 305 305 ALA ALA A . n A 1 30 LEU 30 306 306 LEU LEU A . n A 1 31 GLN 31 307 307 GLN GLN A . n A 1 32 GLN 32 308 308 GLN GLN A . n A 1 33 LEU 33 309 309 LEU LEU A . n A 1 34 ARG 34 310 310 ARG ARG A . n A 1 35 VAL 35 311 311 VAL VAL A . n A 1 36 ASN 36 312 312 ASN ASN A . n A 1 37 TYR 37 313 313 TYR TYR A . n A 1 38 GLY 38 314 314 GLY GLY A . n A 1 39 SER 39 315 315 SER SER A . n A 1 40 CYS 40 316 316 CYS CYS A . n A 1 41 VAL 41 317 317 VAL VAL A . n A 1 42 SER 42 318 318 SER SER A . n A 1 43 GLU 43 319 319 GLU GLU A . n A 1 44 TYR 44 320 320 TYR TYR A . n A 1 45 ASN 45 321 321 ASN ASN A . n A 1 46 ASP 46 322 322 ASP ASP A . n A 1 47 LEU 47 323 323 LEU LEU A . n A 1 48 THR 48 324 324 THR THR A . n A 1 49 LYS 49 325 325 LYS LYS A . n A 1 50 SER 50 326 326 SER SER A . n A 1 51 LEU 51 327 327 LEU LEU A . n A 1 52 ALA 52 328 328 ALA ALA A . n A 1 53 ARG 53 329 329 ARG ARG A . n A 1 54 GLU 54 330 330 GLU GLU A . n A 1 55 ARG 55 331 331 ARG ARG A . n A 1 56 ASP 56 332 332 ASP ASP A . n A 1 57 THR 57 333 333 THR THR A . n A 1 58 SER 58 334 334 SER SER A . n A 1 59 ARG 59 335 335 ARG ARG A . n A 1 60 ARG 60 336 336 ARG ARG A . n A 1 61 LEU 61 337 337 LEU LEU A . n A 1 62 LEU 62 338 338 LEU LEU A . n A 1 63 ALA 63 339 339 ALA ALA A . n A 1 64 GLU 64 340 340 GLU GLU A . n A 1 65 LYS 65 341 341 LYS LYS A . n A 1 66 GLU 66 342 342 GLU GLU A . n A 1 67 ARG 67 343 343 ARG ARG A . n A 1 68 GLU 68 344 344 GLU GLU A . n A 1 69 MET 69 345 345 MET MET A . n A 1 70 ALA 70 346 346 ALA ALA A . n A 1 71 GLU 71 347 347 GLU GLU A . n A 1 72 MET 72 348 348 MET MET A . n A 1 73 ARG 73 349 349 ARG ARG A . n A 1 74 ALA 74 350 350 ALA ALA A . n A 1 75 ARG 75 351 351 ARG ARG A . n A 1 76 MET 76 352 352 MET MET A . n A 1 77 GLN 77 353 353 GLN GLN A . n A 1 78 GLN 78 354 354 GLN GLN A . n A 1 79 GLN 79 355 355 GLN GLN A . n A 1 80 LEU 80 356 356 LEU LEU A . n A 1 81 ASP 81 357 357 ASP ASP A . n A 1 82 GLU 82 358 358 GLU GLU A . n A 1 83 TYR 83 359 359 TYR TYR A . n A 1 84 GLN 84 360 360 GLN GLN A . n A 1 85 GLU 85 361 361 GLU GLU A . n A 1 86 LEU 86 362 362 LEU LEU A . n A 1 87 LEU 87 363 363 LEU LEU A . n A 1 88 ASP 88 364 364 ASP ASP A . n A 1 89 ILE 89 365 365 ILE ILE A . n A 1 90 LYS 90 366 366 LYS LYS A . n A 1 91 LEU 91 367 367 LEU LEU A . n A 1 92 ALA 92 368 368 ALA ALA A . n A 1 93 LEU 93 369 369 LEU LEU A . n A 1 94 ASP 94 370 370 ASP ASP A . n A 1 95 MET 95 371 371 MET MET A . n A 1 96 GLU 96 372 372 GLU GLU A . n A 1 97 ILE 97 373 373 ILE ILE A . n A 1 98 HIS 98 374 374 HIS HIS A . n A 1 99 ALA 99 375 375 ALA ALA A . n A 1 100 TYR 100 376 376 TYR TYR A . n A 1 101 ARG 101 377 377 ARG ARG A . n A 1 102 LYS 102 378 378 LYS LYS A . n A 1 103 LEU 103 379 379 LEU LEU A . n A 1 104 LEU 104 380 380 LEU LEU A . n A 1 105 GLU 105 381 381 GLU GLU A . n A 1 106 GLY 106 382 ? ? ? A . n A 1 107 GLU 107 383 ? ? ? A . n A 1 108 GLU 108 384 ? ? ? A . n A 1 109 GLU 109 385 ? ? ? A . n A 1 110 ARG 110 386 ? ? ? A . n A 1 111 LEU 111 387 ? ? ? A . n A 1 112 ARG 112 388 ? ? ? A . n A 1 113 LEU 113 389 ? ? ? A . n A 1 114 SER 114 390 ? ? ? A . n A 1 115 PRO 115 391 ? ? ? A . n A 1 116 SER 116 392 ? ? ? A . n A 1 117 PRO 117 393 ? ? ? A . n A 1 118 THR 118 394 ? ? ? A . n A 1 119 SER 119 395 ? ? ? A . n A 1 120 GLN 120 396 ? ? ? A . n A 1 121 ARG 121 397 ? ? ? A . n A 1 122 SER 122 398 ? ? ? A . n A 1 123 ARG 123 399 ? ? ? A . n A 1 124 GLY 124 400 ? ? ? A . n A 1 125 ARG 125 401 ? ? ? A . n A 1 126 ALA 126 402 ? ? ? A . n A 1 127 SER 127 403 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 501 1 NI NI A . C 2 NI 1 502 2 NI NI A . D 3 CL 1 503 3 CL CL A . E 4 TRS 1 504 4 TRS TRS A . F 4 TRS 1 505 5 TRS TRS A . G 5 HOH 1 601 3 HOH HOH A . G 5 HOH 2 602 2 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6170 ? 1 MORE -78 ? 1 'SSA (A^2)' 13820 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 11_454 -x+y-1,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 -117.2500000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -46.5780000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2021-02-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0258 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? Auto-Rickshaw ? ? ? . 4 # _pdbx_entry_details.entry_id 6YJD _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 293 ? CG ? A LEU 17 CG 2 1 Y 1 A LEU 293 ? CD1 ? A LEU 17 CD1 3 1 Y 1 A LEU 293 ? CD2 ? A LEU 17 CD2 4 1 Y 1 A GLU 296 ? CG ? A GLU 20 CG 5 1 Y 1 A GLU 296 ? CD ? A GLU 20 CD 6 1 Y 1 A GLU 296 ? OE1 ? A GLU 20 OE1 7 1 Y 1 A GLU 296 ? OE2 ? A GLU 20 OE2 8 1 Y 1 A LEU 297 ? CG ? A LEU 21 CG 9 1 Y 1 A LEU 297 ? CD1 ? A LEU 21 CD1 10 1 Y 1 A LEU 297 ? CD2 ? A LEU 21 CD2 11 1 Y 1 A ARG 302 ? CG ? A ARG 26 CG 12 1 Y 1 A ARG 302 ? CD ? A ARG 26 CD 13 1 Y 1 A ARG 302 ? NE ? A ARG 26 NE 14 1 Y 1 A ARG 302 ? CZ ? A ARG 26 CZ 15 1 Y 1 A ARG 302 ? NH1 ? A ARG 26 NH1 16 1 Y 1 A ARG 302 ? NH2 ? A ARG 26 NH2 17 1 Y 1 A GLN 354 ? CG ? A GLN 78 CG 18 1 Y 1 A GLN 354 ? CD ? A GLN 78 CD 19 1 Y 1 A GLN 354 ? OE1 ? A GLN 78 OE1 20 1 Y 1 A GLN 354 ? NE2 ? A GLN 78 NE2 21 1 Y 1 A ARG 377 ? CG ? A ARG 101 CG 22 1 Y 1 A ARG 377 ? CD ? A ARG 101 CD 23 1 Y 1 A ARG 377 ? NE ? A ARG 101 NE 24 1 Y 1 A ARG 377 ? CZ ? A ARG 101 CZ 25 1 Y 1 A ARG 377 ? NH1 ? A ARG 101 NH1 26 1 Y 1 A ARG 377 ? NH2 ? A ARG 101 NH2 27 1 Y 1 A LYS 378 ? CG ? A LYS 102 CG 28 1 Y 1 A LYS 378 ? CD ? A LYS 102 CD 29 1 Y 1 A LYS 378 ? CE ? A LYS 102 CE 30 1 Y 1 A LYS 378 ? NZ ? A LYS 102 NZ 31 1 Y 1 A LEU 379 ? CG ? A LEU 103 CG 32 1 Y 1 A LEU 379 ? CD1 ? A LEU 103 CD1 33 1 Y 1 A LEU 379 ? CD2 ? A LEU 103 CD2 34 1 Y 1 A LEU 380 ? CG ? A LEU 104 CG 35 1 Y 1 A LEU 380 ? CD1 ? A LEU 104 CD1 36 1 Y 1 A LEU 380 ? CD2 ? A LEU 104 CD2 37 1 Y 1 A GLU 381 ? CG ? A GLU 105 CG 38 1 Y 1 A GLU 381 ? CD ? A GLU 105 CD 39 1 Y 1 A GLU 381 ? OE1 ? A GLU 105 OE1 40 1 Y 1 A GLU 381 ? OE2 ? A GLU 105 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 277 ? A GLY 1 2 1 Y 1 A GLY 382 ? A GLY 106 3 1 Y 1 A GLU 383 ? A GLU 107 4 1 Y 1 A GLU 384 ? A GLU 108 5 1 Y 1 A GLU 385 ? A GLU 109 6 1 Y 1 A ARG 386 ? A ARG 110 7 1 Y 1 A LEU 387 ? A LEU 111 8 1 Y 1 A ARG 388 ? A ARG 112 9 1 Y 1 A LEU 389 ? A LEU 113 10 1 Y 1 A SER 390 ? A SER 114 11 1 Y 1 A PRO 391 ? A PRO 115 12 1 Y 1 A SER 392 ? A SER 116 13 1 Y 1 A PRO 393 ? A PRO 117 14 1 Y 1 A THR 394 ? A THR 118 15 1 Y 1 A SER 395 ? A SER 119 16 1 Y 1 A GLN 396 ? A GLN 120 17 1 Y 1 A ARG 397 ? A ARG 121 18 1 Y 1 A SER 398 ? A SER 122 19 1 Y 1 A ARG 399 ? A ARG 123 20 1 Y 1 A GLY 400 ? A GLY 124 21 1 Y 1 A ARG 401 ? A ARG 125 22 1 Y 1 A ALA 402 ? A ALA 126 23 1 Y 1 A SER 403 ? A SER 127 # _pdbx_audit_support.funding_organization 'KU Leuven' _pdbx_audit_support.country Belgium _pdbx_audit_support.grant_number 'CELSA 18/044' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 'CHLORIDE ION' CL 4 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 61 2 2' _space_group.name_Hall 'P 61 2 (x,y,z+5/12)' _space_group.IT_number 178 _space_group.crystal_system hexagonal _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x-y,x,z+1/6 3 y,-x+y,z+5/6 4 -y,x-y,z+1/3 5 -x+y,-x,z+2/3 6 x-y,-y,-z 7 -x,-x+y,-z+2/3 8 -x,-y,z+1/2 9 y,x,-z+1/3 10 -y,-x,-z+5/6 11 -x+y,y,-z+1/2 12 x,x-y,-z+1/6 #