HEADER VIRAL PROTEIN 16-APR-20 6YPT TITLE X-RAY STRUCTURE OF TURNIP YELLOW MOSAIC VIRUS PRO/DUB IN COMPLEX WITH TITLE 2 UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA REPLICASE POLYPROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: 206 KDA POLYPROTEIN; COMPND 5 EC: 2.1.1.-,3.4.22.-,3.6.4.-,2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: POLYUBIQUITIN-C; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TURNIP YELLOW MOSAIC VIRUS; SOURCE 3 ORGANISM_TAXID: 12154; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: UBC; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRO/DUB, DEUBIQUITINASE, TYMV, UBIQUITIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.FIEULAINE,S.BRESSANELLI REVDAT 4 07-FEB-24 6YPT 1 REMARK REVDAT 3 15-NOV-23 6YPT 1 LINK ATOM REVDAT 2 15-MAR-23 6YPT 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV SEQRES REVDAT 1 05-AUG-20 6YPT 0 JRNL AUTH S.FIEULAINE,S.BRESSANELLI JRNL TITL X-RAY STRUCTURE OF TURNIP YELLOW MOSAIC VIRUS PRO/DUB IN JRNL TITL 2 COMPLEX WITH UBIQUITIN JRNL REF J.BIOL.CHEM. 2020 JRNL REFN ESSN 1083-351X REMARK 2 REMARK 2 RESOLUTION. 3.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 5291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4600 - 4.6136 0.99 2611 137 0.1889 0.2638 REMARK 3 2 4.6136 - 3.6630 0.94 2415 128 0.2394 0.3211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.580 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 106.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 175.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3558 REMARK 3 ANGLE : 0.495 4852 REMARK 3 CHIRALITY : 0.038 570 REMARK 3 PLANARITY : 0.004 632 REMARK 3 DIHEDRAL : 12.852 2192 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4923 -12.4697 -51.2925 REMARK 3 T TENSOR REMARK 3 T11: 0.5027 T22: 0.1444 REMARK 3 T33: 1.2075 T12: -0.0499 REMARK 3 T13: -0.0102 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 0.2868 L22: 3.6038 REMARK 3 L33: 1.4036 L12: -0.1897 REMARK 3 L13: 0.0971 L23: -0.3153 REMARK 3 S TENSOR REMARK 3 S11: 0.0982 S12: -0.0626 S13: 0.0806 REMARK 3 S21: -0.1355 S22: -0.0112 S23: 0.3890 REMARK 3 S31: 0.2886 S32: -0.1235 S33: 0.0983 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8612 2.7203 -42.2872 REMARK 3 T TENSOR REMARK 3 T11: 0.5845 T22: 0.4532 REMARK 3 T33: 1.3893 T12: 0.0202 REMARK 3 T13: -0.1506 T23: -0.1853 REMARK 3 L TENSOR REMARK 3 L11: 0.9829 L22: 6.0524 REMARK 3 L33: 4.7599 L12: 1.3308 REMARK 3 L13: 0.1495 L23: -1.1212 REMARK 3 S TENSOR REMARK 3 S11: -0.3583 S12: -0.2944 S13: 0.8940 REMARK 3 S21: 0.2330 S22: 0.2383 S23: -0.8328 REMARK 3 S31: -0.7307 S32: 0.1957 S33: 0.0276 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8800 -18.9602 -11.3285 REMARK 3 T TENSOR REMARK 3 T11: 1.7778 T22: 3.3898 REMARK 3 T33: 1.5761 T12: 0.6643 REMARK 3 T13: 0.1845 T23: 0.1093 REMARK 3 L TENSOR REMARK 3 L11: 2.3708 L22: 4.9630 REMARK 3 L33: 2.8508 L12: -0.1764 REMARK 3 L13: -0.6195 L23: 1.3407 REMARK 3 S TENSOR REMARK 3 S11: -1.1098 S12: -2.9864 S13: -0.4046 REMARK 3 S21: 0.9695 S22: 0.8691 S23: 0.0035 REMARK 3 S31: 1.0157 S32: 0.5621 S33: -0.0761 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0935 -1.3182 -16.1132 REMARK 3 T TENSOR REMARK 3 T11: 2.2304 T22: 3.6073 REMARK 3 T33: 2.3287 T12: -0.3617 REMARK 3 T13: 0.1079 T23: -0.7359 REMARK 3 L TENSOR REMARK 3 L11: 1.3185 L22: 5.9519 REMARK 3 L33: 2.6055 L12: 0.0916 REMARK 3 L13: 0.2814 L23: 0.9595 REMARK 3 S TENSOR REMARK 3 S11: -0.1232 S12: -0.7193 S13: -0.2152 REMARK 3 S21: 0.1908 S22: 0.4533 S23: -0.9007 REMARK 3 S31: -1.9736 S32: 0.9592 S33: 0.2120 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 1414 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 766 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5303 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.660 REMARK 200 RESOLUTION RANGE LOW (A) : 37.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.21500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LW5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG-20K + 0.1M MES-NAOH PH6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.93000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 720 REMARK 465 HIS A 721 REMARK 465 HIS A 722 REMARK 465 HIS A 723 REMARK 465 HIS A 724 REMARK 465 HIS A 725 REMARK 465 HIS A 726 REMARK 465 GLY A 727 REMARK 465 SER A 728 REMARK 465 SER A 729 REMARK 465 GLN A 730 REMARK 465 LEU A 731 REMARK 465 LEU A 877 REMARK 465 GLY A 878 REMARK 465 SER A 879 REMARK 465 MET B -9 REMARK 465 TYR B -8 REMARK 465 PRO B -7 REMARK 465 TYR B -6 REMARK 465 ASP B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ASP B -2 REMARK 465 TYR B -1 REMARK 465 ALA B 0 REMARK 465 MET C 720 REMARK 465 HIS C 721 REMARK 465 HIS C 722 REMARK 465 HIS C 723 REMARK 465 HIS C 724 REMARK 465 HIS C 725 REMARK 465 HIS C 726 REMARK 465 GLY C 727 REMARK 465 SER C 728 REMARK 465 SER C 729 REMARK 465 GLN C 730 REMARK 465 LEU C 731 REMARK 465 LEU C 877 REMARK 465 GLY C 878 REMARK 465 SER C 879 REMARK 465 MET D -9 REMARK 465 TYR D -8 REMARK 465 PRO D -7 REMARK 465 TYR D -6 REMARK 465 ASP D -5 REMARK 465 VAL D -4 REMARK 465 PRO D -3 REMARK 465 ASP D -2 REMARK 465 TYR D -1 REMARK 465 ALA D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 756 58.22 -102.22 REMARK 500 THR A 766 -164.33 -160.74 REMARK 500 SER A 770 -65.03 -102.79 REMARK 500 PRO A 772 -179.41 -68.38 REMARK 500 ASN A 835 76.52 59.59 REMARK 500 ILE A 855 -47.03 -131.49 REMARK 500 PRO A 867 -155.32 -97.04 REMARK 500 GLU B 34 -63.11 -103.59 REMARK 500 ALA B 46 61.44 60.54 REMARK 500 ARG B 72 74.07 -104.38 REMARK 500 ARG B 74 -158.28 -86.12 REMARK 500 ARG C 756 57.64 -101.00 REMARK 500 THR C 766 -164.30 -160.80 REMARK 500 SER C 770 -64.87 -102.69 REMARK 500 PRO C 772 -179.25 -68.48 REMARK 500 ASN C 835 76.33 59.66 REMARK 500 ILE C 855 -47.21 -131.69 REMARK 500 PRO C 867 -155.56 -96.92 REMARK 500 GLU D 34 -63.32 -103.57 REMARK 500 ALA D 46 61.69 60.22 REMARK 500 ARG D 72 74.10 -104.53 REMARK 500 ARG D 74 -158.15 -86.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GVE A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GVE C 901 and GLY D REMARK 800 75 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GVE C 901 and CYS C REMARK 800 783 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A5U RELATED DB: PDB REMARK 900 NATIVE PROTEIN REMARK 900 RELATED ID: 5LW5 RELATED DB: PDB REMARK 900 DELTAC5 MUTANT REMARK 900 RELATED ID: 5LWA RELATED DB: PDB REMARK 900 DELTAC5 MUTANT + I847A MUTANT DBREF 6YPT A 728 879 UNP P10358 POLR_TYMV 728 879 DBREF 6YPT B 1 75 UNP P0CG48 UBC_HUMAN 77 151 DBREF 6YPT C 728 879 UNP P10358 POLR_TYMV 728 879 DBREF 6YPT D 1 75 UNP P0CG48 UBC_HUMAN 77 151 SEQADV 6YPT MET A 720 UNP P10358 INITIATING METHIONINE SEQADV 6YPT HIS A 721 UNP P10358 EXPRESSION TAG SEQADV 6YPT HIS A 722 UNP P10358 EXPRESSION TAG SEQADV 6YPT HIS A 723 UNP P10358 EXPRESSION TAG SEQADV 6YPT HIS A 724 UNP P10358 EXPRESSION TAG SEQADV 6YPT HIS A 725 UNP P10358 EXPRESSION TAG SEQADV 6YPT HIS A 726 UNP P10358 EXPRESSION TAG SEQADV 6YPT GLY A 727 UNP P10358 EXPRESSION TAG SEQADV 6YPT MET B -9 UNP P0CG48 INITIATING METHIONINE SEQADV 6YPT TYR B -8 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT PRO B -7 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT TYR B -6 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT ASP B -5 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT VAL B -4 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT PRO B -3 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT ASP B -2 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT TYR B -1 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT ALA B 0 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT MET C 720 UNP P10358 INITIATING METHIONINE SEQADV 6YPT HIS C 721 UNP P10358 EXPRESSION TAG SEQADV 6YPT HIS C 722 UNP P10358 EXPRESSION TAG SEQADV 6YPT HIS C 723 UNP P10358 EXPRESSION TAG SEQADV 6YPT HIS C 724 UNP P10358 EXPRESSION TAG SEQADV 6YPT HIS C 725 UNP P10358 EXPRESSION TAG SEQADV 6YPT HIS C 726 UNP P10358 EXPRESSION TAG SEQADV 6YPT GLY C 727 UNP P10358 EXPRESSION TAG SEQADV 6YPT MET D -9 UNP P0CG48 INITIATING METHIONINE SEQADV 6YPT TYR D -8 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT PRO D -7 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT TYR D -6 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT ASP D -5 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT VAL D -4 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT PRO D -3 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT ASP D -2 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT TYR D -1 UNP P0CG48 EXPRESSION TAG SEQADV 6YPT ALA D 0 UNP P0CG48 EXPRESSION TAG SEQRES 1 A 160 MET HIS HIS HIS HIS HIS HIS GLY SER SER GLN LEU LEU SEQRES 2 A 160 PRO ALA PRO LEU THR ASN ASP PRO THR ALA ILE GLY PRO SEQRES 3 A 160 VAL LEU PRO PHE GLU GLU LEU HIS PRO ARG ARG TYR PRO SEQRES 4 A 160 GLU ASN THR ALA THR PHE LEU THR ARG LEU ARG SER LEU SEQRES 5 A 160 PRO SER ASN HIS LEU PRO GLN PRO THR LEU ASN CYS LEU SEQRES 6 A 160 LEU SER ALA VAL SER ASP GLN THR LYS VAL SER GLU GLU SEQRES 7 A 160 HIS LEU TRP GLU SER LEU GLN THR ILE LEU PRO ASP SER SEQRES 8 A 160 GLN LEU SER ASN GLU GLU THR ASN THR LEU GLY LEU SER SEQRES 9 A 160 THR GLU HIS LEU THR ALA LEU ALA HIS LEU TYR ASN PHE SEQRES 10 A 160 GLN ALA THR VAL TYR SER ASP ARG GLY PRO ILE LEU PHE SEQRES 11 A 160 GLY PRO SER ASP THR ILE LYS ARG ILE ASP ILE THR HIS SEQRES 12 A 160 THR THR GLY PRO PRO SER HIS PHE SER PRO GLY LYS ARG SEQRES 13 A 160 LEU LEU GLY SER SEQRES 1 B 85 MET TYR PRO TYR ASP VAL PRO ASP TYR ALA MET GLN ILE SEQRES 2 B 85 PHE VAL LYS THR LEU THR GLY LYS THR ILE THR LEU GLU SEQRES 3 B 85 VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA LYS SEQRES 4 B 85 ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG SEQRES 5 B 85 LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG THR SEQRES 6 B 85 LEU SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU HIS SEQRES 7 B 85 LEU VAL LEU ARG LEU ARG GLY SEQRES 1 C 160 MET HIS HIS HIS HIS HIS HIS GLY SER SER GLN LEU LEU SEQRES 2 C 160 PRO ALA PRO LEU THR ASN ASP PRO THR ALA ILE GLY PRO SEQRES 3 C 160 VAL LEU PRO PHE GLU GLU LEU HIS PRO ARG ARG TYR PRO SEQRES 4 C 160 GLU ASN THR ALA THR PHE LEU THR ARG LEU ARG SER LEU SEQRES 5 C 160 PRO SER ASN HIS LEU PRO GLN PRO THR LEU ASN CYS LEU SEQRES 6 C 160 LEU SER ALA VAL SER ASP GLN THR LYS VAL SER GLU GLU SEQRES 7 C 160 HIS LEU TRP GLU SER LEU GLN THR ILE LEU PRO ASP SER SEQRES 8 C 160 GLN LEU SER ASN GLU GLU THR ASN THR LEU GLY LEU SER SEQRES 9 C 160 THR GLU HIS LEU THR ALA LEU ALA HIS LEU TYR ASN PHE SEQRES 10 C 160 GLN ALA THR VAL TYR SER ASP ARG GLY PRO ILE LEU PHE SEQRES 11 C 160 GLY PRO SER ASP THR ILE LYS ARG ILE ASP ILE THR HIS SEQRES 12 C 160 THR THR GLY PRO PRO SER HIS PHE SER PRO GLY LYS ARG SEQRES 13 C 160 LEU LEU GLY SER SEQRES 1 D 85 MET TYR PRO TYR ASP VAL PRO ASP TYR ALA MET GLN ILE SEQRES 2 D 85 PHE VAL LYS THR LEU THR GLY LYS THR ILE THR LEU GLU SEQRES 3 D 85 VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA LYS SEQRES 4 D 85 ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG SEQRES 5 D 85 LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG THR SEQRES 6 D 85 LEU SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU HIS SEQRES 7 D 85 LEU VAL LEU ARG LEU ARG GLY HET GVE A 901 8 HET GVE C 901 8 HETNAM GVE METHYL 4-AMINOBUTANOATE FORMUL 5 GVE 2(C5 H11 N O2) HELIX 1 AA1 ALA A 734 ASN A 738 5 5 HELIX 2 AA2 PHE A 749 HIS A 753 1 5 HELIX 3 AA3 ASN A 782 LYS A 793 1 12 HELIX 4 AA4 SER A 795 LEU A 807 1 13 HELIX 5 AA5 PRO A 808 LEU A 812 5 5 HELIX 6 AA6 ASN A 814 LEU A 820 1 7 HELIX 7 AA7 SER A 823 ASN A 835 1 13 HELIX 8 AA8 THR B 22 GLU B 34 1 13 HELIX 9 AA9 PRO B 37 ASP B 39 5 3 HELIX 10 AB1 LEU B 56 ASN B 60 5 5 HELIX 11 AB2 PHE C 749 HIS C 753 1 5 HELIX 12 AB3 ASN C 782 LYS C 793 1 12 HELIX 13 AB4 SER C 795 LEU C 807 1 13 HELIX 14 AB5 PRO C 808 LEU C 812 5 5 HELIX 15 AB6 ASN C 814 LEU C 820 1 7 HELIX 16 AB7 SER C 823 ASN C 835 1 13 HELIX 17 AB8 THR D 22 GLU D 34 1 13 HELIX 18 AB9 PRO D 37 ASP D 39 5 3 HELIX 19 AC1 LEU D 56 ASN D 60 5 5 SHEET 1 AA1 2 ALA A 742 PRO A 748 0 SHEET 2 AA1 2 LEU A 765 ARG A 769 -1 O LEU A 768 N ILE A 743 SHEET 1 AA2 4 GLY A 845 PHE A 849 0 SHEET 2 AA2 4 ALA A 838 SER A 842 -1 N VAL A 840 O ILE A 847 SHEET 3 AA2 4 ASP A 859 THR A 863 1 O ILE A 860 N TYR A 841 SHEET 4 AA2 4 HIS A 869 PRO A 872 -1 O SER A 871 N THR A 861 SHEET 1 AA3 5 THR B 12 GLU B 16 0 SHEET 2 AA3 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 AA3 5 THR B 66 LEU B 71 1 O LEU B 69 N LYS B 6 SHEET 4 AA3 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA3 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA4 2 ALA C 742 PRO C 748 0 SHEET 2 AA4 2 LEU C 765 ARG C 769 -1 O LEU C 768 N ILE C 743 SHEET 1 AA5 4 GLY C 845 PHE C 849 0 SHEET 2 AA5 4 ALA C 838 SER C 842 -1 N VAL C 840 O ILE C 847 SHEET 3 AA5 4 ASP C 859 THR C 863 1 O ILE C 860 N TYR C 841 SHEET 4 AA5 4 HIS C 869 PRO C 872 -1 O SER C 871 N THR C 861 SHEET 1 AA6 5 THR D 12 GLU D 16 0 SHEET 2 AA6 5 GLN D 2 LYS D 6 -1 N VAL D 5 O ILE D 13 SHEET 3 AA6 5 THR D 66 LEU D 71 1 O LEU D 69 N LYS D 6 SHEET 4 AA6 5 GLN D 41 PHE D 45 -1 N ILE D 44 O HIS D 68 SHEET 5 AA6 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 LINK SG CYS A 783 CB GVE A 901 1555 1555 1.69 LINK N GVE A 901 C GLY B 75 1555 1555 1.33 LINK SG CYS C 783 CB GVE C 901 1555 1555 1.68 LINK N GVE C 901 C GLY D 75 1555 1555 1.33 CISPEP 1 GLY A 865 PRO A 866 0 7.31 CISPEP 2 PRO A 866 PRO A 867 0 -8.88 CISPEP 3 GLY C 865 PRO C 866 0 6.67 CISPEP 4 PRO C 866 PRO C 867 0 -7.76 SITE 1 AC1 6 LEU A 781 CYS A 783 LEU A 820 SER A 868 SITE 2 AC1 6 HIS A 869 GLY B 75 SITE 1 AC2 9 LEU C 781 CYS C 783 LEU C 820 GLY C 821 SITE 2 AC2 9 LEU C 822 SER C 868 HIS C 869 PHE C 870 SITE 3 AC2 9 ARG D 74 SITE 1 AC3 11 LEU C 781 ASN C 782 LEU C 784 LEU C 785 SITE 2 AC3 11 SER C 786 ALA C 787 LEU C 820 SER C 868 SITE 3 AC3 11 HIS C 869 PHE C 870 GLY D 75 CRYST1 37.930 51.860 125.250 90.00 98.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026364 0.000000 0.003879 0.00000 SCALE2 0.000000 0.019283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008070 0.00000