data_6YTU # _entry.id 6YTU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.342 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6YTU WWPDB D_1292108280 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6YTU _pdbx_database_status.recvd_initial_deposition_date 2020-04-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hallin, E.I.' 1 ? 'Touma, C.' 2 ? 'Bramham, C.R.' 3 ? 'Kursula, P.' 4 0000-0001-8529-3751 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Febs J.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1742-464X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 288 _citation.language ? _citation.page_first 2930 _citation.page_last 2955 _citation.title 'Arc self-association and formation of virus-like capsids are mediated by an N-terminal helical coil motif.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1111/febs.15618 _citation.pdbx_database_id_PubMed 33175445 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eriksen, M.S.' 1 ? primary 'Nikolaienko, O.' 2 ? primary 'Hallin, E.I.' 3 ? primary 'Grodem, S.' 4 ? primary 'Bustad, H.J.' 5 ? primary 'Flydal, M.I.' 6 ? primary 'Merski, I.' 7 ? primary 'Hosokawa, T.' 8 ? primary 'Lascu, D.' 9 ? primary 'Akerkar, S.' 10 ? primary 'Cuellar, J.' 11 ? primary 'Chambers, J.J.' 12 ? primary ;O'Connell, R. ; 13 ? primary 'Muruganandam, G.' 14 ? primary 'Loris, R.' 15 ? primary 'Touma, C.' 16 ? primary 'Kanhema, T.' 17 ? primary 'Hayashi, Y.' 18 ? primary 'Stratton, M.M.' 19 ? primary 'Valpuesta, J.M.' 20 ? primary 'Kursula, P.' 21 ? primary 'Martinez, A.' 22 ? primary 'Bramham, C.R.' 23 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6YTU _cell.details ? _cell.formula_units_Z ? _cell.length_a 26.844 _cell.length_a_esd ? _cell.length_b 42.556 _cell.length_b_esd ? _cell.length_c 67.350 _cell.length_c_esd ? _cell.volume 76938.839 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YTU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Activity-regulated cytoskeleton-associated protein' 4467.078 2 ? ? ? ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 114 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hArc,Activity-regulated gene 3.1 protein homolog,Arg3.1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)QETIANLERWVKREMHVWREVFYRLERWADRLES' _entity_poly.pdbx_seq_one_letter_code_can XQETIANLERWVKREMHVWREVFYRLERWADRLES _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLN n 1 3 GLU n 1 4 THR n 1 5 ILE n 1 6 ALA n 1 7 ASN n 1 8 LEU n 1 9 GLU n 1 10 ARG n 1 11 TRP n 1 12 VAL n 1 13 LYS n 1 14 ARG n 1 15 GLU n 1 16 MET n 1 17 HIS n 1 18 VAL n 1 19 TRP n 1 20 ARG n 1 21 GLU n 1 22 VAL n 1 23 PHE n 1 24 TYR n 1 25 ARG n 1 26 LEU n 1 27 GLU n 1 28 ARG n 1 29 TRP n 1 30 ALA n 1 31 ASP n 1 32 ARG n 1 33 LEU n 1 34 GLU n 1 35 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 35 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ARC_HUMAN _struct_ref.pdbx_db_accession Q7LC44 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code QETIANLERWVKREMHVWREVFYRLERWADRLES _struct_ref.pdbx_align_begin 99 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6YTU A 2 ? 35 ? Q7LC44 99 ? 132 ? 99 132 2 1 6YTU B 2 ? 35 ? Q7LC44 99 ? 132 ? 99 132 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6YTU ACE A 1 ? UNP Q7LC44 ? ? acetylation 98 1 2 6YTU ACE B 1 ? UNP Q7LC44 ? ? acetylation 98 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6YTU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 281 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '45% MPD, 0.1 M Tris-HCl (pH 7.5)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-06-14 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9796 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9796 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P13 (MX1)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6YTU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.95 _reflns.d_resolution_low 100 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 44960 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 90.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.081 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.085 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.907 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 0.95 _reflns_shell.d_res_low 0.97 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1366 _reflns_shell.percent_possible_all 38.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.pdbx_Rsym_value 1.282 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.455 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.384 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 12.41 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6YTU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.95 _refine.ls_d_res_low 100 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 44785 _refine.ls_number_reflns_R_free 2242 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 90.7 _refine.ls_percent_reflns_R_free 5 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1042 _refine.ls_R_factor_R_free 0.1241 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1032 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 0.95 _refine_hist.d_res_low 100 _refine_hist.number_atoms_solvent 114 _refine_hist.number_atoms_total 758 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 627 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0187 ? 803 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.7080 ? 1093 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.1292 ? 103 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0147 ? 143 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 16.5281 ? 328 ? f_dihedral_angle_d ? ? # _struct.entry_id 6YTU _struct.title 'Atomic-resolution structure of the coiled-coil dimerisation domain of human Arc' _struct.pdbx_descriptor 'Activity-regulated cytoskeleton-associated protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6YTU _struct_keywords.text 'Arc, oligomerisation, coiled coil, dimer, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 2 ? GLU A 34 ? GLN A 99 GLU A 131 1 ? 33 HELX_P HELX_P2 AA2 GLN B 2 ? LEU B 33 ? GLN B 99 LEU B 130 1 ? 32 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A GLN 2 N A ? A ACE 98 A GLN 99 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale2 covale both ? A ACE 1 C ? ? ? 1_555 A GLN 2 N B ? A ACE 98 A GLN 99 1_555 ? ? ? ? ? ? ? 1.293 ? ? covale3 covale both ? B ACE 1 C ? ? ? 1_555 B GLN 2 N A ? B ACE 98 B GLN 99 1_555 ? ? ? ? ? ? ? 1.286 ? ? covale4 covale both ? B ACE 1 C ? ? ? 1_555 B GLN 2 N B ? B ACE 98 B GLN 99 1_555 ? ? ? ? ? ? ? 1.381 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MPD 201 ? 7 'binding site for residue MPD A 201' AC2 Software A CL 202 ? 3 'binding site for residue CL A 202' AC3 Software B MPD 201 ? 9 'binding site for residue MPD B 201' AC4 Software B ACE 98 ? 15 'binding site for Di-peptide ACE B 98 and GLN B 99' AC5 Software B ACE 98 ? 15 'binding site for Di-peptide ACE B 98 and GLN B 99' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ASN A 7 ? ASN A 104 . ? 4_556 ? 2 AC1 7 ARG A 28 ? ARG A 125 . ? 1_555 ? 3 AC1 7 TRP A 29 ? TRP A 126 . ? 1_555 ? 4 AC1 7 HOH F . ? HOH A 324 . ? 1_555 ? 5 AC1 7 HOH F . ? HOH A 332 . ? 1_555 ? 6 AC1 7 ARG B 10 ? ARG B 107 . ? 1_655 ? 7 AC1 7 HOH G . ? HOH B 345 . ? 1_655 ? 8 AC2 3 ARG A 25 ? ARG A 122 . ? 1_555 ? 9 AC2 3 HOH F . ? HOH A 344 . ? 1_555 ? 10 AC2 3 ARG B 14 ? ARG B 111 . ? 1_655 ? 11 AC3 9 HOH F . ? HOH A 334 . ? 3_556 ? 12 AC3 9 HOH F . ? HOH A 351 . ? 3_556 ? 13 AC3 9 ASN B 7 ? ASN B 104 . ? 1_555 ? 14 AC3 9 LEU B 8 ? LEU B 105 . ? 1_555 ? 15 AC3 9 TRP B 11 ? TRP B 108 . ? 1_555 ? 16 AC3 9 TRP B 29 ? TRP B 126 . ? 4_556 ? 17 AC3 9 ARG B 32 ? ARG B 129 . ? 4_556 ? 18 AC3 9 LEU B 33 ? LEU B 130 . ? 4_556 ? 19 AC3 9 HOH G . ? HOH B 323 . ? 1_555 ? 20 AC4 15 LEU A 33 ? LEU A 130 . ? 1_555 ? 21 AC4 15 GLU A 34 ? GLU A 131 . ? 1_555 ? 22 AC4 15 SER A 35 ? SER A 132 . ? 1_555 ? 23 AC4 15 HOH F . ? HOH A 304 . ? 1_555 ? 24 AC4 15 HOH F . ? HOH A 320 . ? 1_555 ? 25 AC4 15 GLU B 3 ? GLU B 100 . ? 1_555 ? 26 AC4 15 THR B 4 ? THR B 101 . ? 1_555 ? 27 AC4 15 ILE B 5 ? ILE B 102 . ? 1_555 ? 28 AC4 15 ALA B 6 ? ALA B 103 . ? 1_555 ? 29 AC4 15 ARG B 28 ? ARG B 125 . ? 2_455 ? 30 AC4 15 HOH G . ? HOH B 302 . ? 1_555 ? 31 AC4 15 HOH G . ? HOH B 322 . ? 1_555 ? 32 AC4 15 HOH G . ? HOH B 327 . ? 2_455 ? 33 AC4 15 HOH G . ? HOH B 330 . ? 1_555 ? 34 AC4 15 HOH G . ? HOH B 342 . ? 2_455 ? 35 AC5 15 LEU A 33 ? LEU A 130 . ? 1_555 ? 36 AC5 15 GLU A 34 ? GLU A 131 . ? 1_555 ? 37 AC5 15 SER A 35 ? SER A 132 . ? 1_555 ? 38 AC5 15 HOH F . ? HOH A 304 . ? 1_555 ? 39 AC5 15 HOH F . ? HOH A 320 . ? 1_555 ? 40 AC5 15 GLU B 3 ? GLU B 100 . ? 1_555 ? 41 AC5 15 THR B 4 ? THR B 101 . ? 1_555 ? 42 AC5 15 ILE B 5 ? ILE B 102 . ? 1_555 ? 43 AC5 15 ALA B 6 ? ALA B 103 . ? 1_555 ? 44 AC5 15 ARG B 28 ? ARG B 125 . ? 2_455 ? 45 AC5 15 HOH G . ? HOH B 302 . ? 1_555 ? 46 AC5 15 HOH G . ? HOH B 322 . ? 1_555 ? 47 AC5 15 HOH G . ? HOH B 327 . ? 2_455 ? 48 AC5 15 HOH G . ? HOH B 330 . ? 1_555 ? 49 AC5 15 HOH G . ? HOH B 342 . ? 2_455 ? # _atom_sites.entry_id 6YTU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.037252 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023498 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014848 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 98 98 ACE ACE A . n A 1 2 GLN 2 99 99 GLN GLN A . n A 1 3 GLU 3 100 100 GLU GLU A . n A 1 4 THR 4 101 101 THR THR A . n A 1 5 ILE 5 102 102 ILE ILE A . n A 1 6 ALA 6 103 103 ALA ALA A . n A 1 7 ASN 7 104 104 ASN ASN A . n A 1 8 LEU 8 105 105 LEU LEU A . n A 1 9 GLU 9 106 106 GLU GLU A . n A 1 10 ARG 10 107 107 ARG ARG A . n A 1 11 TRP 11 108 108 TRP TRP A . n A 1 12 VAL 12 109 109 VAL VAL A . n A 1 13 LYS 13 110 110 LYS LYS A . n A 1 14 ARG 14 111 111 ARG ARG A . n A 1 15 GLU 15 112 112 GLU GLU A . n A 1 16 MET 16 113 113 MET MET A . n A 1 17 HIS 17 114 114 HIS HIS A . n A 1 18 VAL 18 115 115 VAL VAL A . n A 1 19 TRP 19 116 116 TRP TRP A . n A 1 20 ARG 20 117 117 ARG ARG A . n A 1 21 GLU 21 118 118 GLU GLU A . n A 1 22 VAL 22 119 119 VAL VAL A . n A 1 23 PHE 23 120 120 PHE PHE A . n A 1 24 TYR 24 121 121 TYR TYR A . n A 1 25 ARG 25 122 122 ARG ARG A . n A 1 26 LEU 26 123 123 LEU LEU A . n A 1 27 GLU 27 124 124 GLU GLU A . n A 1 28 ARG 28 125 125 ARG ARG A . n A 1 29 TRP 29 126 126 TRP TRP A . n A 1 30 ALA 30 127 127 ALA ALA A . n A 1 31 ASP 31 128 128 ASP ASP A . n A 1 32 ARG 32 129 129 ARG ARG A . n A 1 33 LEU 33 130 130 LEU LEU A . n A 1 34 GLU 34 131 131 GLU GLU A . n A 1 35 SER 35 132 132 SER SER A . n B 1 1 ACE 1 98 98 ACE ACE B . n B 1 2 GLN 2 99 99 GLN GLN B . n B 1 3 GLU 3 100 100 GLU GLU B . n B 1 4 THR 4 101 101 THR THR B . n B 1 5 ILE 5 102 102 ILE ILE B . n B 1 6 ALA 6 103 103 ALA ALA B . n B 1 7 ASN 7 104 104 ASN ASN B . n B 1 8 LEU 8 105 105 LEU LEU B . n B 1 9 GLU 9 106 106 GLU GLU B . n B 1 10 ARG 10 107 107 ARG ARG B . n B 1 11 TRP 11 108 108 TRP TRP B . n B 1 12 VAL 12 109 109 VAL VAL B . n B 1 13 LYS 13 110 110 LYS LYS B . n B 1 14 ARG 14 111 111 ARG ARG B . n B 1 15 GLU 15 112 112 GLU GLU B . n B 1 16 MET 16 113 113 MET MET B . n B 1 17 HIS 17 114 114 HIS HIS B . n B 1 18 VAL 18 115 115 VAL VAL B . n B 1 19 TRP 19 116 116 TRP TRP B . n B 1 20 ARG 20 117 117 ARG ARG B . n B 1 21 GLU 21 118 118 GLU GLU B . n B 1 22 VAL 22 119 119 VAL VAL B . n B 1 23 PHE 23 120 120 PHE PHE B . n B 1 24 TYR 24 121 121 TYR TYR B . n B 1 25 ARG 25 122 122 ARG ARG B . n B 1 26 LEU 26 123 123 LEU LEU B . n B 1 27 GLU 27 124 124 GLU GLU B . n B 1 28 ARG 28 125 125 ARG ARG B . n B 1 29 TRP 29 126 126 TRP TRP B . n B 1 30 ALA 30 127 127 ALA ALA B . n B 1 31 ASP 31 128 128 ASP ASP B . n B 1 32 ARG 32 129 129 ARG ARG B . n B 1 33 LEU 33 130 130 LEU LEU B . n B 1 34 GLU 34 131 131 GLU GLU B . n B 1 35 SER 35 132 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD 1 201 199 MPD MPD A . D 3 CL 1 202 1 CL CL A . E 2 MPD 1 201 199 MPD MPD B . F 4 HOH 1 301 96 HOH HOH A . F 4 HOH 2 302 75 HOH HOH A . F 4 HOH 3 303 44 HOH HOH A . F 4 HOH 4 304 89 HOH HOH A . F 4 HOH 5 305 35 HOH HOH A . F 4 HOH 6 306 10 HOH HOH A . F 4 HOH 7 307 46 HOH HOH A . F 4 HOH 8 308 16 HOH HOH A . F 4 HOH 9 309 18 HOH HOH A . F 4 HOH 10 310 95 HOH HOH A . F 4 HOH 11 311 12 HOH HOH A . F 4 HOH 12 312 19 HOH HOH A . F 4 HOH 13 313 54 HOH HOH A . F 4 HOH 14 314 31 HOH HOH A . F 4 HOH 15 315 4 HOH HOH A . F 4 HOH 16 316 42 HOH HOH A . F 4 HOH 17 317 37 HOH HOH A . F 4 HOH 18 318 14 HOH HOH A . F 4 HOH 19 319 117 HOH HOH A . F 4 HOH 20 320 129 HOH HOH A . F 4 HOH 21 321 36 HOH HOH A . F 4 HOH 22 322 135 HOH HOH A . F 4 HOH 23 323 108 HOH HOH A . F 4 HOH 24 324 28 HOH HOH A . F 4 HOH 25 325 45 HOH HOH A . F 4 HOH 26 326 59 HOH HOH A . F 4 HOH 27 327 57 HOH HOH A . F 4 HOH 28 328 22 HOH HOH A . F 4 HOH 29 329 24 HOH HOH A . F 4 HOH 30 330 73 HOH HOH A . F 4 HOH 31 331 21 HOH HOH A . F 4 HOH 32 332 98 HOH HOH A . F 4 HOH 33 333 69 HOH HOH A . F 4 HOH 34 334 134 HOH HOH A . F 4 HOH 35 335 48 HOH HOH A . F 4 HOH 36 336 103 HOH HOH A . F 4 HOH 37 337 63 HOH HOH A . F 4 HOH 38 338 113 HOH HOH A . F 4 HOH 39 339 118 HOH HOH A . F 4 HOH 40 340 33 HOH HOH A . F 4 HOH 41 341 39 HOH HOH A . F 4 HOH 42 342 81 HOH HOH A . F 4 HOH 43 343 115 HOH HOH A . F 4 HOH 44 344 51 HOH HOH A . F 4 HOH 45 345 114 HOH HOH A . F 4 HOH 46 346 82 HOH HOH A . F 4 HOH 47 347 77 HOH HOH A . F 4 HOH 48 348 61 HOH HOH A . F 4 HOH 49 349 78 HOH HOH A . F 4 HOH 50 350 67 HOH HOH A . F 4 HOH 51 351 40 HOH HOH A . F 4 HOH 52 352 68 HOH HOH A . F 4 HOH 53 353 109 HOH HOH A . F 4 HOH 54 354 53 HOH HOH A . F 4 HOH 55 355 100 HOH HOH A . F 4 HOH 56 356 84 HOH HOH A . F 4 HOH 57 357 127 HOH HOH A . F 4 HOH 58 358 87 HOH HOH A . F 4 HOH 59 359 124 HOH HOH A . F 4 HOH 60 360 83 HOH HOH A . F 4 HOH 61 361 126 HOH HOH A . F 4 HOH 62 362 116 HOH HOH A . G 4 HOH 1 301 15 HOH HOH B . G 4 HOH 2 302 119 HOH HOH B . G 4 HOH 3 303 76 HOH HOH B . G 4 HOH 4 304 125 HOH HOH B . G 4 HOH 5 305 23 HOH HOH B . G 4 HOH 6 306 9 HOH HOH B . G 4 HOH 7 307 49 HOH HOH B . G 4 HOH 8 308 43 HOH HOH B . G 4 HOH 9 309 107 HOH HOH B . G 4 HOH 10 310 99 HOH HOH B . G 4 HOH 11 311 13 HOH HOH B . G 4 HOH 12 312 1 HOH HOH B . G 4 HOH 13 313 41 HOH HOH B . G 4 HOH 14 314 6 HOH HOH B . G 4 HOH 15 315 27 HOH HOH B . G 4 HOH 16 316 123 HOH HOH B . G 4 HOH 17 317 3 HOH HOH B . G 4 HOH 18 318 71 HOH HOH B . G 4 HOH 19 319 25 HOH HOH B . G 4 HOH 20 320 20 HOH HOH B . G 4 HOH 21 321 17 HOH HOH B . G 4 HOH 22 322 30 HOH HOH B . G 4 HOH 23 323 58 HOH HOH B . G 4 HOH 24 324 38 HOH HOH B . G 4 HOH 25 325 122 HOH HOH B . G 4 HOH 26 326 7 HOH HOH B . G 4 HOH 27 327 32 HOH HOH B . G 4 HOH 28 328 2 HOH HOH B . G 4 HOH 29 329 5 HOH HOH B . G 4 HOH 30 330 65 HOH HOH B . G 4 HOH 31 331 66 HOH HOH B . G 4 HOH 32 332 121 HOH HOH B . G 4 HOH 33 333 111 HOH HOH B . G 4 HOH 34 334 80 HOH HOH B . G 4 HOH 35 335 8 HOH HOH B . G 4 HOH 36 336 130 HOH HOH B . G 4 HOH 37 337 79 HOH HOH B . G 4 HOH 38 338 132 HOH HOH B . G 4 HOH 39 339 55 HOH HOH B . G 4 HOH 40 340 62 HOH HOH B . G 4 HOH 41 341 133 HOH HOH B . G 4 HOH 42 342 74 HOH HOH B . G 4 HOH 43 343 72 HOH HOH B . G 4 HOH 44 344 110 HOH HOH B . G 4 HOH 45 345 26 HOH HOH B . G 4 HOH 46 346 86 HOH HOH B . G 4 HOH 47 347 70 HOH HOH B . G 4 HOH 48 348 128 HOH HOH B . G 4 HOH 49 349 64 HOH HOH B . G 4 HOH 50 350 90 HOH HOH B . G 4 HOH 51 351 101 HOH HOH B . G 4 HOH 52 352 97 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2580 ? 1 MORE -39 ? 1 'SSA (A^2)' 6160 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-03-03 2 'Structure model' 1 1 2021-05-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.year' 5 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 4 # _pdbx_entry_details.entry_id 6YTU _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HE21 B GLN 99 ? B O B HOH 302 ? ? 1.54 2 1 O A HOH 353 ? ? O A HOH 362 ? ? 1.93 3 1 OE1 B GLU 118 ? B O B HOH 301 ? ? 2.08 4 1 O A HOH 310 ? ? O A HOH 353 ? ? 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE B ARG 111 ? ? CZ B ARG 111 ? ? NH1 B ARG 111 ? ? 123.71 120.30 3.41 0.50 N 2 1 NE B ARG 111 ? ? CZ B ARG 111 ? ? NH2 B ARG 111 ? ? 116.01 120.30 -4.29 0.50 N 3 1 CB B LEU 130 ? A CG B LEU 130 ? A CD1 B LEU 130 ? A 100.58 111.00 -10.42 1.70 N # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id 132 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 35 # _pdbx_audit_support.funding_organization 'Norwegian Research Council' _pdbx_audit_support.country Norway _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.crystal_system orthorhombic _space_group.name_H-M_alt 'P 21 21 21' _space_group.IT_number 19 _space_group.name_Hall 'P 2ac 2ab' _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 #