data_6Z1V # _entry.id 6Z1V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6Z1V pdb_00006z1v 10.2210/pdb6z1v/pdb WWPDB D_1292108720 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-09-23 2 'Structure model' 1 1 2020-09-30 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_database_2.pdbx_DOI' 11 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6Z1V _pdbx_database_status.recvd_initial_deposition_date 2020-05-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Structure of the EC2 domain of CD9 without nanobody bound, this structure was uploaded to the PDB previously' _pdbx_database_related.db_id 6RLR _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Oosterheert, W.' 1 0000-0003-1189-6044 'Pearce, N.M.' 2 0000-0002-6693-8603 'Gros, P.' 3 0000-0002-7782-2585 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Life Sci Alliance' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2575-1077 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 3 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Implications for tetraspanin-enriched microdomain assembly based on structures of CD9 with EWI-F.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.26508/lsa.202000883 _citation.pdbx_database_id_PubMed 32958604 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Oosterheert, W.' 1 0000-0003-1189-6044 primary 'Xenaki, K.T.' 2 0000-0002-0153-6320 primary 'Neviani, V.' 3 0000-0002-5729-3639 primary 'Pos, W.' 4 ? primary 'Doulkeridou, S.' 5 ? primary 'Manshande, J.' 6 ? primary 'Pearce, N.M.' 7 0000-0002-6693-8603 primary 'Kroon-Batenburg, L.M.' 8 0000-0002-5321-1392 primary 'Lutz, M.' 9 ? primary 'van Bergen En Henegouwen, P.M.' 10 0000-0001-6050-9042 primary 'Gros, P.' 11 0000-0002-7782-2585 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CD9 antigen' 10129.433 1 ? ? ? ? 2 polymer man 'Nanobody 4E8' 15546.274 1 ? ? ? ? 3 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 non-polymer syn 'ACETIC ACID' 60.052 1 ? ? ? ? 6 water nat water 18.015 134 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '5H9 antigen,Cell growth-inhibiting gene 2 protein,Leukocyte antigen MIC3,Motility-related protein,MRP-1,Tetraspanin-29,Tspan-29,p24' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSKDEVIKEVQEFYKDTYNKLKTKDEPQRETLKAIHYALNCCGLAGGVEQFISDICPKKDVLETFTVKSCPDAIKEVFDN AAAHHHHHH ; ;GSKDEVIKEVQEFYKDTYNKLKTKDEPQRETLKAIHYALNCCGLAGGVEQFISDICPKKDVLETFTVKSCPDAIKEVFDN AAAHHHHHH ; A ? 2 'polypeptide(L)' no no ;EVQLVESGGRLVRTGGSLRLSCAASGRTFSNYVMGWFRQAPGKEREVVAAITWSGDITWHADFVKGRFTISRDNAKNTVY LQMNSLKPEDTAVYYCAATERWGLRAPADWGSWGQGTQVTVSSHGSGLVPRGSGGGHHHHHH ; ;EVQLVESGGRLVRTGGSLRLSCAASGRTFSNYVMGWFRQAPGKEREVVAAITWSGDITWHADFVKGRFTISRDNAKNTVY LQMNSLKPEDTAVYYCAATERWGLRAPADWGSWGQGTQVTVSSHGSGLVPRGSGGGHHHHHH ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'TRIETHYLENE GLYCOL' PGE 4 1,2-ETHANEDIOL EDO 5 'ACETIC ACID' ACY 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LYS n 1 4 ASP n 1 5 GLU n 1 6 VAL n 1 7 ILE n 1 8 LYS n 1 9 GLU n 1 10 VAL n 1 11 GLN n 1 12 GLU n 1 13 PHE n 1 14 TYR n 1 15 LYS n 1 16 ASP n 1 17 THR n 1 18 TYR n 1 19 ASN n 1 20 LYS n 1 21 LEU n 1 22 LYS n 1 23 THR n 1 24 LYS n 1 25 ASP n 1 26 GLU n 1 27 PRO n 1 28 GLN n 1 29 ARG n 1 30 GLU n 1 31 THR n 1 32 LEU n 1 33 LYS n 1 34 ALA n 1 35 ILE n 1 36 HIS n 1 37 TYR n 1 38 ALA n 1 39 LEU n 1 40 ASN n 1 41 CYS n 1 42 CYS n 1 43 GLY n 1 44 LEU n 1 45 ALA n 1 46 GLY n 1 47 GLY n 1 48 VAL n 1 49 GLU n 1 50 GLN n 1 51 PHE n 1 52 ILE n 1 53 SER n 1 54 ASP n 1 55 ILE n 1 56 CYS n 1 57 PRO n 1 58 LYS n 1 59 LYS n 1 60 ASP n 1 61 VAL n 1 62 LEU n 1 63 GLU n 1 64 THR n 1 65 PHE n 1 66 THR n 1 67 VAL n 1 68 LYS n 1 69 SER n 1 70 CYS n 1 71 PRO n 1 72 ASP n 1 73 ALA n 1 74 ILE n 1 75 LYS n 1 76 GLU n 1 77 VAL n 1 78 PHE n 1 79 ASP n 1 80 ASN n 1 81 ALA n 1 82 ALA n 1 83 ALA n 1 84 HIS n 1 85 HIS n 1 86 HIS n 1 87 HIS n 1 88 HIS n 1 89 HIS n 2 1 GLU n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 VAL n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 GLY n 2 10 ARG n 2 11 LEU n 2 12 VAL n 2 13 ARG n 2 14 THR n 2 15 GLY n 2 16 GLY n 2 17 SER n 2 18 LEU n 2 19 ARG n 2 20 LEU n 2 21 SER n 2 22 CYS n 2 23 ALA n 2 24 ALA n 2 25 SER n 2 26 GLY n 2 27 ARG n 2 28 THR n 2 29 PHE n 2 30 SER n 2 31 ASN n 2 32 TYR n 2 33 VAL n 2 34 MET n 2 35 GLY n 2 36 TRP n 2 37 PHE n 2 38 ARG n 2 39 GLN n 2 40 ALA n 2 41 PRO n 2 42 GLY n 2 43 LYS n 2 44 GLU n 2 45 ARG n 2 46 GLU n 2 47 VAL n 2 48 VAL n 2 49 ALA n 2 50 ALA n 2 51 ILE n 2 52 THR n 2 53 TRP n 2 54 SER n 2 55 GLY n 2 56 ASP n 2 57 ILE n 2 58 THR n 2 59 TRP n 2 60 HIS n 2 61 ALA n 2 62 ASP n 2 63 PHE n 2 64 VAL n 2 65 LYS n 2 66 GLY n 2 67 ARG n 2 68 PHE n 2 69 THR n 2 70 ILE n 2 71 SER n 2 72 ARG n 2 73 ASP n 2 74 ASN n 2 75 ALA n 2 76 LYS n 2 77 ASN n 2 78 THR n 2 79 VAL n 2 80 TYR n 2 81 LEU n 2 82 GLN n 2 83 MET n 2 84 ASN n 2 85 SER n 2 86 LEU n 2 87 LYS n 2 88 PRO n 2 89 GLU n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 VAL n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 ALA n 2 98 ALA n 2 99 THR n 2 100 GLU n 2 101 ARG n 2 102 TRP n 2 103 GLY n 2 104 LEU n 2 105 ARG n 2 106 ALA n 2 107 PRO n 2 108 ALA n 2 109 ASP n 2 110 TRP n 2 111 GLY n 2 112 SER n 2 113 TRP n 2 114 GLY n 2 115 GLN n 2 116 GLY n 2 117 THR n 2 118 GLN n 2 119 VAL n 2 120 THR n 2 121 VAL n 2 122 SER n 2 123 SER n 2 124 HIS n 2 125 GLY n 2 126 SER n 2 127 GLY n 2 128 LEU n 2 129 VAL n 2 130 PRO n 2 131 ARG n 2 132 GLY n 2 133 SER n 2 134 GLY n 2 135 GLY n 2 136 GLY n 2 137 HIS n 2 138 HIS n 2 139 HIS n 2 140 HIS n 2 141 HIS n 2 142 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 89 Human ? 'CD9, MIC3, TSPAN29, GIG2' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? KIDNEY ? ? ? ? ? HEK293EBNA ? ? EMBRYONIC ? ? ? ? ? ? 'pUPE 107.03' ? ? 2 1 sample 'Biological sequence' 1 142 Llama ? ? ? ? ? ? ? ? 'Lama glama' 9844 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? 'Codon Plus' ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 112 112 GLY GLY A . n A 1 2 SER 2 113 113 SER SER A . n A 1 3 LYS 3 114 114 LYS LYS A . n A 1 4 ASP 4 115 115 ASP ASP A . n A 1 5 GLU 5 116 116 GLU GLU A . n A 1 6 VAL 6 117 117 VAL VAL A . n A 1 7 ILE 7 118 118 ILE ILE A . n A 1 8 LYS 8 119 119 LYS LYS A . n A 1 9 GLU 9 120 120 GLU GLU A . n A 1 10 VAL 10 121 121 VAL VAL A . n A 1 11 GLN 11 122 122 GLN GLN A . n A 1 12 GLU 12 123 123 GLU GLU A . n A 1 13 PHE 13 124 124 PHE PHE A . n A 1 14 TYR 14 125 125 TYR TYR A . n A 1 15 LYS 15 126 126 LYS LYS A . n A 1 16 ASP 16 127 127 ASP ASP A . n A 1 17 THR 17 128 128 THR THR A . n A 1 18 TYR 18 129 129 TYR TYR A . n A 1 19 ASN 19 130 130 ASN ASN A . n A 1 20 LYS 20 131 131 LYS LYS A . n A 1 21 LEU 21 132 132 LEU LEU A . n A 1 22 LYS 22 133 133 LYS LYS A . n A 1 23 THR 23 134 134 THR THR A . n A 1 24 LYS 24 135 135 LYS LYS A . n A 1 25 ASP 25 136 136 ASP ASP A . n A 1 26 GLU 26 137 137 GLU GLU A . n A 1 27 PRO 27 138 138 PRO PRO A . n A 1 28 GLN 28 139 139 GLN GLN A . n A 1 29 ARG 29 140 140 ARG ARG A . n A 1 30 GLU 30 141 141 GLU GLU A . n A 1 31 THR 31 142 142 THR THR A . n A 1 32 LEU 32 143 143 LEU LEU A . n A 1 33 LYS 33 144 144 LYS LYS A . n A 1 34 ALA 34 145 145 ALA ALA A . n A 1 35 ILE 35 146 146 ILE ILE A . n A 1 36 HIS 36 147 147 HIS HIS A . n A 1 37 TYR 37 148 148 TYR TYR A . n A 1 38 ALA 38 149 149 ALA ALA A . n A 1 39 LEU 39 150 150 LEU LEU A . n A 1 40 ASN 40 151 151 ASN ASN A . n A 1 41 CYS 41 152 152 CYS CYS A . n A 1 42 CYS 42 153 153 CYS CYS A . n A 1 43 GLY 43 154 154 GLY GLY A . n A 1 44 LEU 44 155 155 LEU LEU A . n A 1 45 ALA 45 156 156 ALA ALA A . n A 1 46 GLY 46 157 157 GLY GLY A . n A 1 47 GLY 47 158 158 GLY GLY A . n A 1 48 VAL 48 159 159 VAL VAL A . n A 1 49 GLU 49 160 160 GLU GLU A . n A 1 50 GLN 50 161 161 GLN GLN A . n A 1 51 PHE 51 162 162 PHE PHE A . n A 1 52 ILE 52 163 163 ILE ILE A . n A 1 53 SER 53 164 164 SER SER A . n A 1 54 ASP 54 165 165 ASP ASP A . n A 1 55 ILE 55 166 166 ILE ILE A . n A 1 56 CYS 56 167 167 CYS CYS A . n A 1 57 PRO 57 168 168 PRO PRO A . n A 1 58 LYS 58 169 169 LYS LYS A . n A 1 59 LYS 59 170 170 LYS LYS A . n A 1 60 ASP 60 171 171 ASP ASP A . n A 1 61 VAL 61 172 172 VAL VAL A . n A 1 62 LEU 62 173 173 LEU LEU A . n A 1 63 GLU 63 174 174 GLU GLU A . n A 1 64 THR 64 175 175 THR THR A . n A 1 65 PHE 65 176 176 PHE PHE A . n A 1 66 THR 66 177 177 THR THR A . n A 1 67 VAL 67 178 178 VAL VAL A . n A 1 68 LYS 68 179 179 LYS LYS A . n A 1 69 SER 69 180 180 SER SER A . n A 1 70 CYS 70 181 181 CYS CYS A . n A 1 71 PRO 71 182 182 PRO PRO A . n A 1 72 ASP 72 183 183 ASP ASP A . n A 1 73 ALA 73 184 184 ALA ALA A . n A 1 74 ILE 74 185 185 ILE ILE A . n A 1 75 LYS 75 186 186 LYS LYS A . n A 1 76 GLU 76 187 187 GLU GLU A . n A 1 77 VAL 77 188 188 VAL VAL A . n A 1 78 PHE 78 189 189 PHE PHE A . n A 1 79 ASP 79 190 190 ASP ASP A . n A 1 80 ASN 80 191 191 ASN ASN A . n A 1 81 ALA 81 192 ? ? ? A . n A 1 82 ALA 82 193 ? ? ? A . n A 1 83 ALA 83 194 ? ? ? A . n A 1 84 HIS 84 195 ? ? ? A . n A 1 85 HIS 85 196 ? ? ? A . n A 1 86 HIS 86 197 ? ? ? A . n A 1 87 HIS 87 198 ? ? ? A . n A 1 88 HIS 88 199 ? ? ? A . n A 1 89 HIS 89 200 ? ? ? A . n B 2 1 GLU 1 1 1 GLU GLU B . n B 2 2 VAL 2 2 2 VAL VAL B . n B 2 3 GLN 3 3 3 GLN GLN B . n B 2 4 LEU 4 4 4 LEU LEU B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 GLU 6 6 6 GLU GLU B . n B 2 7 SER 7 7 7 SER SER B . n B 2 8 GLY 8 8 8 GLY GLY B . n B 2 9 GLY 9 9 9 GLY GLY B . n B 2 10 ARG 10 10 10 ARG ARG B . n B 2 11 LEU 11 11 11 LEU LEU B . n B 2 12 VAL 12 12 12 VAL VAL B . n B 2 13 ARG 13 13 13 ARG ARG B . n B 2 14 THR 14 14 14 THR THR B . n B 2 15 GLY 15 15 15 GLY GLY B . n B 2 16 GLY 16 16 16 GLY GLY B . n B 2 17 SER 17 17 17 SER SER B . n B 2 18 LEU 18 18 18 LEU LEU B . n B 2 19 ARG 19 19 19 ARG ARG B . n B 2 20 LEU 20 20 20 LEU LEU B . n B 2 21 SER 21 21 21 SER SER B . n B 2 22 CYS 22 22 22 CYS CYS B . n B 2 23 ALA 23 23 23 ALA ALA B . n B 2 24 ALA 24 24 24 ALA ALA B . n B 2 25 SER 25 25 25 SER SER B . n B 2 26 GLY 26 26 26 GLY GLY B . n B 2 27 ARG 27 27 27 ARG ARG B . n B 2 28 THR 28 28 28 THR THR B . n B 2 29 PHE 29 29 29 PHE PHE B . n B 2 30 SER 30 30 30 SER SER B . n B 2 31 ASN 31 31 31 ASN ASN B . n B 2 32 TYR 32 32 32 TYR TYR B . n B 2 33 VAL 33 33 33 VAL VAL B . n B 2 34 MET 34 34 34 MET MET B . n B 2 35 GLY 35 35 35 GLY GLY B . n B 2 36 TRP 36 36 36 TRP TRP B . n B 2 37 PHE 37 37 37 PHE PHE B . n B 2 38 ARG 38 38 38 ARG ARG B . n B 2 39 GLN 39 39 39 GLN GLN B . n B 2 40 ALA 40 40 40 ALA ALA B . n B 2 41 PRO 41 41 41 PRO PRO B . n B 2 42 GLY 42 42 42 GLY GLY B . n B 2 43 LYS 43 43 43 LYS LYS B . n B 2 44 GLU 44 44 44 GLU GLU B . n B 2 45 ARG 45 45 45 ARG ARG B . n B 2 46 GLU 46 46 46 GLU GLU B . n B 2 47 VAL 47 47 47 VAL VAL B . n B 2 48 VAL 48 48 48 VAL VAL B . n B 2 49 ALA 49 49 49 ALA ALA B . n B 2 50 ALA 50 50 50 ALA ALA B . n B 2 51 ILE 51 51 51 ILE ILE B . n B 2 52 THR 52 52 52 THR THR B . n B 2 53 TRP 53 53 53 TRP TRP B . n B 2 54 SER 54 54 54 SER SER B . n B 2 55 GLY 55 55 55 GLY GLY B . n B 2 56 ASP 56 56 56 ASP ASP B . n B 2 57 ILE 57 57 57 ILE ILE B . n B 2 58 THR 58 58 58 THR THR B . n B 2 59 TRP 59 59 59 TRP TRP B . n B 2 60 HIS 60 60 60 HIS HIS B . n B 2 61 ALA 61 61 61 ALA ALA B . n B 2 62 ASP 62 62 62 ASP ASP B . n B 2 63 PHE 63 63 63 PHE PHE B . n B 2 64 VAL 64 64 64 VAL VAL B . n B 2 65 LYS 65 65 65 LYS LYS B . n B 2 66 GLY 66 66 66 GLY GLY B . n B 2 67 ARG 67 67 67 ARG ARG B . n B 2 68 PHE 68 68 68 PHE PHE B . n B 2 69 THR 69 69 69 THR THR B . n B 2 70 ILE 70 70 70 ILE ILE B . n B 2 71 SER 71 71 71 SER SER B . n B 2 72 ARG 72 72 72 ARG ARG B . n B 2 73 ASP 73 73 73 ASP ASP B . n B 2 74 ASN 74 74 74 ASN ASN B . n B 2 75 ALA 75 75 75 ALA ALA B . n B 2 76 LYS 76 76 76 LYS LYS B . n B 2 77 ASN 77 77 77 ASN ASN B . n B 2 78 THR 78 78 78 THR THR B . n B 2 79 VAL 79 79 79 VAL VAL B . n B 2 80 TYR 80 80 80 TYR TYR B . n B 2 81 LEU 81 81 81 LEU LEU B . n B 2 82 GLN 82 82 82 GLN GLN B . n B 2 83 MET 83 83 83 MET MET B . n B 2 84 ASN 84 84 84 ASN ASN B . n B 2 85 SER 85 85 85 SER SER B . n B 2 86 LEU 86 86 86 LEU LEU B . n B 2 87 LYS 87 87 87 LYS LYS B . n B 2 88 PRO 88 88 88 PRO PRO B . n B 2 89 GLU 89 89 89 GLU GLU B . n B 2 90 ASP 90 90 90 ASP ASP B . n B 2 91 THR 91 91 91 THR THR B . n B 2 92 ALA 92 92 92 ALA ALA B . n B 2 93 VAL 93 93 93 VAL VAL B . n B 2 94 TYR 94 94 94 TYR TYR B . n B 2 95 TYR 95 95 95 TYR TYR B . n B 2 96 CYS 96 96 96 CYS CYS B . n B 2 97 ALA 97 97 97 ALA ALA B . n B 2 98 ALA 98 98 98 ALA ALA B . n B 2 99 THR 99 99 99 THR THR B . n B 2 100 GLU 100 100 100 GLU GLU B . n B 2 101 ARG 101 101 101 ARG ARG B . n B 2 102 TRP 102 102 102 TRP TRP B . n B 2 103 GLY 103 103 103 GLY GLY B . n B 2 104 LEU 104 104 104 LEU LEU B . n B 2 105 ARG 105 105 105 ARG ARG B . n B 2 106 ALA 106 106 106 ALA ALA B . n B 2 107 PRO 107 107 107 PRO PRO B . n B 2 108 ALA 108 108 108 ALA ALA B . n B 2 109 ASP 109 109 109 ASP ASP B . n B 2 110 TRP 110 110 110 TRP TRP B . n B 2 111 GLY 111 111 111 GLY GLY B . n B 2 112 SER 112 112 112 SER SER B . n B 2 113 TRP 113 113 113 TRP TRP B . n B 2 114 GLY 114 114 114 GLY GLY B . n B 2 115 GLN 115 115 115 GLN GLN B . n B 2 116 GLY 116 116 116 GLY GLY B . n B 2 117 THR 117 117 117 THR THR B . n B 2 118 GLN 118 118 118 GLN GLN B . n B 2 119 VAL 119 119 119 VAL VAL B . n B 2 120 THR 120 120 120 THR THR B . n B 2 121 VAL 121 121 121 VAL VAL B . n B 2 122 SER 122 122 122 SER SER B . n B 2 123 SER 123 123 123 SER SER B . n B 2 124 HIS 124 124 ? ? ? B . n B 2 125 GLY 125 125 ? ? ? B . n B 2 126 SER 126 126 ? ? ? B . n B 2 127 GLY 127 127 ? ? ? B . n B 2 128 LEU 128 128 ? ? ? B . n B 2 129 VAL 129 129 ? ? ? B . n B 2 130 PRO 130 130 ? ? ? B . n B 2 131 ARG 131 131 ? ? ? B . n B 2 132 GLY 132 132 ? ? ? B . n B 2 133 SER 133 133 ? ? ? B . n B 2 134 GLY 134 134 ? ? ? B . n B 2 135 GLY 135 135 ? ? ? B . n B 2 136 GLY 136 136 ? ? ? B . n B 2 137 HIS 137 137 ? ? ? B . n B 2 138 HIS 138 138 ? ? ? B . n B 2 139 HIS 139 139 ? ? ? B . n B 2 140 HIS 140 140 ? ? ? B . n B 2 141 HIS 141 141 ? ? ? B . n B 2 142 HIS 142 142 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PGE 1 301 2 PGE PGE A . D 4 EDO 1 201 1 EDO EDO B . E 5 ACY 1 202 1 ACY ACY B . F 6 HOH 1 401 102 HOH HOH A . F 6 HOH 2 402 145 HOH HOH A . F 6 HOH 3 403 57 HOH HOH A . F 6 HOH 4 404 76 HOH HOH A . F 6 HOH 5 405 139 HOH HOH A . F 6 HOH 6 406 77 HOH HOH A . F 6 HOH 7 407 104 HOH HOH A . F 6 HOH 8 408 152 HOH HOH A . F 6 HOH 9 409 131 HOH HOH A . F 6 HOH 10 410 16 HOH HOH A . F 6 HOH 11 411 34 HOH HOH A . F 6 HOH 12 412 20 HOH HOH A . F 6 HOH 13 413 24 HOH HOH A . F 6 HOH 14 414 10 HOH HOH A . F 6 HOH 15 415 40 HOH HOH A . F 6 HOH 16 416 155 HOH HOH A . F 6 HOH 17 417 126 HOH HOH A . F 6 HOH 18 418 67 HOH HOH A . F 6 HOH 19 419 156 HOH HOH A . F 6 HOH 20 420 52 HOH HOH A . F 6 HOH 21 421 112 HOH HOH A . F 6 HOH 22 422 46 HOH HOH A . F 6 HOH 23 423 79 HOH HOH A . F 6 HOH 24 424 89 HOH HOH A . F 6 HOH 25 425 135 HOH HOH A . F 6 HOH 26 426 63 HOH HOH A . F 6 HOH 27 427 17 HOH HOH A . F 6 HOH 28 428 23 HOH HOH A . F 6 HOH 29 429 27 HOH HOH A . F 6 HOH 30 430 92 HOH HOH A . F 6 HOH 31 431 50 HOH HOH A . F 6 HOH 32 432 75 HOH HOH A . F 6 HOH 33 433 15 HOH HOH A . F 6 HOH 34 434 151 HOH HOH A . F 6 HOH 35 435 120 HOH HOH A . F 6 HOH 36 436 42 HOH HOH A . F 6 HOH 37 437 124 HOH HOH A . F 6 HOH 38 438 123 HOH HOH A . F 6 HOH 39 439 153 HOH HOH A . F 6 HOH 40 440 146 HOH HOH A . F 6 HOH 41 441 148 HOH HOH A . G 6 HOH 1 301 28 HOH HOH B . G 6 HOH 2 302 130 HOH HOH B . G 6 HOH 3 303 51 HOH HOH B . G 6 HOH 4 304 81 HOH HOH B . G 6 HOH 5 305 66 HOH HOH B . G 6 HOH 6 306 83 HOH HOH B . G 6 HOH 7 307 56 HOH HOH B . G 6 HOH 8 308 161 HOH HOH B . G 6 HOH 9 309 29 HOH HOH B . G 6 HOH 10 310 12 HOH HOH B . G 6 HOH 11 311 78 HOH HOH B . G 6 HOH 12 312 48 HOH HOH B . G 6 HOH 13 313 61 HOH HOH B . G 6 HOH 14 314 22 HOH HOH B . G 6 HOH 15 315 55 HOH HOH B . G 6 HOH 16 316 41 HOH HOH B . G 6 HOH 17 317 35 HOH HOH B . G 6 HOH 18 318 30 HOH HOH B . G 6 HOH 19 319 86 HOH HOH B . G 6 HOH 20 320 8 HOH HOH B . G 6 HOH 21 321 45 HOH HOH B . G 6 HOH 22 322 118 HOH HOH B . G 6 HOH 23 323 59 HOH HOH B . G 6 HOH 24 324 1 HOH HOH B . G 6 HOH 25 325 11 HOH HOH B . G 6 HOH 26 326 62 HOH HOH B . G 6 HOH 27 327 4 HOH HOH B . G 6 HOH 28 328 36 HOH HOH B . G 6 HOH 29 329 88 HOH HOH B . G 6 HOH 30 330 149 HOH HOH B . G 6 HOH 31 331 33 HOH HOH B . G 6 HOH 32 332 26 HOH HOH B . G 6 HOH 33 333 21 HOH HOH B . G 6 HOH 34 334 70 HOH HOH B . G 6 HOH 35 335 7 HOH HOH B . G 6 HOH 36 336 128 HOH HOH B . G 6 HOH 37 337 107 HOH HOH B . G 6 HOH 38 338 3 HOH HOH B . G 6 HOH 39 339 47 HOH HOH B . G 6 HOH 40 340 43 HOH HOH B . G 6 HOH 41 341 13 HOH HOH B . G 6 HOH 42 342 138 HOH HOH B . G 6 HOH 43 343 54 HOH HOH B . G 6 HOH 44 344 39 HOH HOH B . G 6 HOH 45 345 99 HOH HOH B . G 6 HOH 46 346 37 HOH HOH B . G 6 HOH 47 347 101 HOH HOH B . G 6 HOH 48 348 9 HOH HOH B . G 6 HOH 49 349 53 HOH HOH B . G 6 HOH 50 350 115 HOH HOH B . G 6 HOH 51 351 6 HOH HOH B . G 6 HOH 52 352 64 HOH HOH B . G 6 HOH 53 353 18 HOH HOH B . G 6 HOH 54 354 72 HOH HOH B . G 6 HOH 55 355 65 HOH HOH B . G 6 HOH 56 356 87 HOH HOH B . G 6 HOH 57 357 129 HOH HOH B . G 6 HOH 58 358 49 HOH HOH B . G 6 HOH 59 359 32 HOH HOH B . G 6 HOH 60 360 25 HOH HOH B . G 6 HOH 61 361 98 HOH HOH B . G 6 HOH 62 362 127 HOH HOH B . G 6 HOH 63 363 19 HOH HOH B . G 6 HOH 64 364 97 HOH HOH B . G 6 HOH 65 365 91 HOH HOH B . G 6 HOH 66 366 14 HOH HOH B . G 6 HOH 67 367 5 HOH HOH B . G 6 HOH 68 368 93 HOH HOH B . G 6 HOH 69 369 157 HOH HOH B . G 6 HOH 70 370 162 HOH HOH B . G 6 HOH 71 371 109 HOH HOH B . G 6 HOH 72 372 85 HOH HOH B . G 6 HOH 73 373 44 HOH HOH B . G 6 HOH 74 374 60 HOH HOH B . G 6 HOH 75 375 31 HOH HOH B . G 6 HOH 76 376 136 HOH HOH B . G 6 HOH 77 377 150 HOH HOH B . G 6 HOH 78 378 140 HOH HOH B . G 6 HOH 79 379 160 HOH HOH B . G 6 HOH 80 380 2 HOH HOH B . G 6 HOH 81 381 90 HOH HOH B . G 6 HOH 82 382 84 HOH HOH B . G 6 HOH 83 383 154 HOH HOH B . G 6 HOH 84 384 95 HOH HOH B . G 6 HOH 85 385 73 HOH HOH B . G 6 HOH 86 386 94 HOH HOH B . G 6 HOH 87 387 58 HOH HOH B . G 6 HOH 88 388 38 HOH HOH B . G 6 HOH 89 389 164 HOH HOH B . G 6 HOH 90 390 163 HOH HOH B . G 6 HOH 91 391 147 HOH HOH B . G 6 HOH 92 392 143 HOH HOH B . G 6 HOH 93 393 82 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 119 ? CG ? A LYS 8 CG 2 1 Y 1 A LYS 119 ? CD ? A LYS 8 CD 3 1 Y 1 A LYS 119 ? CE ? A LYS 8 CE 4 1 Y 1 A LYS 119 ? NZ ? A LYS 8 NZ 5 1 Y 1 A LYS 135 ? CG ? A LYS 24 CG 6 1 Y 1 A LYS 135 ? CD ? A LYS 24 CD 7 1 Y 1 A LYS 135 ? CE ? A LYS 24 CE 8 1 Y 1 A LYS 135 ? NZ ? A LYS 24 NZ 9 1 Y 1 A GLU 141 ? CG ? A GLU 30 CG 10 1 Y 1 A GLU 141 ? CD ? A GLU 30 CD 11 1 Y 1 A GLU 141 ? OE1 ? A GLU 30 OE1 12 1 Y 1 A GLU 141 ? OE2 ? A GLU 30 OE2 13 1 Y 1 B ARG 27 ? CG ? B ARG 27 CG 14 1 Y 1 B ARG 27 ? CD ? B ARG 27 CD 15 1 Y 1 B ARG 27 ? NE ? B ARG 27 NE 16 1 Y 1 B ARG 27 ? CZ ? B ARG 27 CZ 17 1 Y 1 B ARG 27 ? NH1 ? B ARG 27 NH1 18 1 Y 1 B ARG 27 ? NH2 ? B ARG 27 NH2 19 1 Y 1 B GLU 44 ? CG ? B GLU 44 CG 20 1 Y 1 B GLU 44 ? CD ? B GLU 44 CD 21 1 Y 1 B GLU 44 ? OE1 ? B GLU 44 OE1 22 1 Y 1 B GLU 44 ? OE2 ? B GLU 44 OE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6Z1V _cell.details ? _cell.formula_units_Z ? _cell.length_a 61.521 _cell.length_a_esd ? _cell.length_b 89.446 _cell.length_b_esd ? _cell.length_c 35.684 _cell.length_c_esd ? _cell.volume 196362.178 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6Z1V _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 35.67 _exptl_crystal.description '3D-diamond like shape' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details 'room temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 M sodium acetate, 0.1 M Tris pH 8.0, 30% (w/v) PEG 4,000 cryoprotected with reservoir solution supplemented with 20% (v/v) ethylene glycol. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details 'liquid nitrogen temperature' _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-08-06 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9159 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9159 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 19.48 _reflns.entry_id 6Z1V _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.33 _reflns.d_resolution_low 44.72 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 32044 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.4 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.02 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.33 _reflns_shell.d_res_low 1.44 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1603 _reflns_shell.percent_possible_all 68.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.98 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.60 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.653 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 27.70 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ;For the CD9EC2 - 4E8 dataset, the autoprocessed and anisotropical-truncated (autoproc-staraniso) reflection data file provided by DLS was employed. The structure was solved by molecular replacement using PHASER with the CD9EC2 - 4C8 structure as search model. The 4C8 residues were replaced with the corresponding 4E8 residues and the CDR regions of the nanobody were manually built in Coot. The structure was then iteratively refined using Refmac5 or Phenix, alternated with model improvement in COOT. The final refinement in Phenix yielded Rwork/Rfree = 15.1/19.0% ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6Z1V _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.33 _refine.ls_d_res_low 44.72 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 32042 _refine.ls_number_reflns_R_free 1570 _refine.ls_number_reflns_R_work 30472 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 69.74 _refine.ls_percent_reflns_R_free 4.90 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1531 _refine.ls_R_factor_R_free 0.1898 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1512 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'Structure of CD9EC2 bound to nanobody 4C8' _refine.pdbx_stereochemistry_target_values 'CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.1549 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1369 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.33 _refine_hist.d_res_low 44.72 _refine_hist.number_atoms_solvent 134 _refine_hist.number_atoms_total 1722 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1570 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0079 ? 1775 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.9406 ? 2429 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0772 ? 261 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0057 ? 319 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 23.8579 ? 679 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.33 1.37 . . 20 371 9.49 . . . 0.5263 . 0.2693 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.37 1.42 . . 45 784 20.20 . . . 0.3523 . 0.2443 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.42 1.48 . . 78 1505 38.55 . . . 0.2764 . 0.2110 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.48 1.55 . . 125 2138 54.74 . . . 0.2478 . 0.1810 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.55 1.63 . . 150 2820 72.09 . . . 0.2464 . 0.1631 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.63 1.73 . . 171 3584 91.03 . . . 0.2196 . 0.1594 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.73 1.87 . . 203 3957 99.93 . . . 0.1857 . 0.1441 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.87 2.05 . . 188 3704 93.33 . . . 0.1715 . 0.1322 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.05 2.35 . . 189 3436 86.56 . . . 0.1893 . 0.1322 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.35 2.96 . . 198 3956 97.67 . . . 0.1946 . 0.1480 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.96 44.72 . . 203 4217 99.77 . . . 0.1779 . 0.1578 . . . . . . . . . . . # _struct.entry_id 6Z1V _struct.title 'Structure of the EC2 domain of CD9 in complex with nanobody 4E8' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6Z1V _struct_keywords.text 'Antibody-antigen complex, tetraspanin, EC2 domain, nanobody, CELL ADHESION' _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP CD9_HUMAN P21926 ? 1 KDEVIKEVQEFYKDTYNKLKTKDEPQRETLKAIHYALNCCGLAGGVEQFISDICPKKDVLETFTVKSCPDAIKEVFDN 114 2 PDB 6Z1V 6Z1V ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6Z1V A 3 ? 80 ? P21926 114 ? 191 ? 114 191 2 2 6Z1V B 1 ? 142 ? 6Z1V 1 ? 142 ? 1 142 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6Z1V GLY A 1 ? UNP P21926 ? ? 'expression tag' 112 1 1 6Z1V SER A 2 ? UNP P21926 ? ? 'expression tag' 113 2 1 6Z1V ALA A 81 ? UNP P21926 ? ? 'expression tag' 192 3 1 6Z1V ALA A 82 ? UNP P21926 ? ? 'expression tag' 193 4 1 6Z1V ALA A 83 ? UNP P21926 ? ? 'expression tag' 194 5 1 6Z1V HIS A 84 ? UNP P21926 ? ? 'expression tag' 195 6 1 6Z1V HIS A 85 ? UNP P21926 ? ? 'expression tag' 196 7 1 6Z1V HIS A 86 ? UNP P21926 ? ? 'expression tag' 197 8 1 6Z1V HIS A 87 ? UNP P21926 ? ? 'expression tag' 198 9 1 6Z1V HIS A 88 ? UNP P21926 ? ? 'expression tag' 199 10 1 6Z1V HIS A 89 ? UNP P21926 ? ? 'expression tag' 200 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1880 ? 1 MORE 2 ? 1 'SSA (A^2)' 9930 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details '1 : 1 complex was purified using gel filtration prior to crystallization.' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 2 ? THR A 23 ? SER A 113 THR A 134 1 ? 22 HELX_P HELX_P2 AA2 LYS A 24 ? PRO A 27 ? LYS A 135 PRO A 138 5 ? 4 HELX_P HELX_P3 AA3 GLN A 28 ? ASN A 40 ? GLN A 139 ASN A 151 1 ? 13 HELX_P HELX_P4 AA4 GLU A 49 ? CYS A 56 ? GLU A 160 CYS A 167 5 ? 8 HELX_P HELX_P5 AA5 VAL A 61 ? PHE A 65 ? VAL A 172 PHE A 176 5 ? 5 HELX_P HELX_P6 AA6 SER A 69 ? ASN A 80 ? SER A 180 ASN A 191 1 ? 12 HELX_P HELX_P7 AA7 THR B 28 ? TYR B 32 ? THR B 28 TYR B 32 5 ? 5 HELX_P HELX_P8 AA8 LYS B 87 ? THR B 91 ? LYS B 87 THR B 91 5 ? 5 HELX_P HELX_P9 AA9 ALA B 106 ? TRP B 110 ? ALA B 106 TRP B 110 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 41 SG ? ? ? 1_555 A CYS 70 SG ? ? A CYS 152 A CYS 181 1_555 ? ? ? ? ? ? ? 2.090 ? ? disulf2 disulf ? ? A CYS 42 SG A ? ? 1_555 A CYS 56 SG A ? A CYS 153 A CYS 167 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? A CYS 42 SG B ? ? 1_555 A CYS 56 SG B ? A CYS 153 A CYS 167 1_555 ? ? ? ? ? ? ? 2.012 ? ? disulf4 disulf ? ? B CYS 22 SG A ? ? 1_555 B CYS 96 SG A ? B CYS 22 B CYS 96 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf5 disulf ? ? B CYS 22 SG B ? ? 1_555 B CYS 96 SG B ? B CYS 22 B CYS 96 1_555 ? ? ? ? ? ? ? 2.022 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 6 ? AA3 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU B 4 ? SER B 7 ? LEU B 4 SER B 7 AA1 2 LEU B 18 ? ALA B 24 ? LEU B 18 ALA B 24 AA1 3 THR B 78 ? MET B 83 ? THR B 78 MET B 83 AA1 4 PHE B 68 ? ASP B 73 ? PHE B 68 ASP B 73 AA2 1 LEU B 11 ? ARG B 13 ? LEU B 11 ARG B 13 AA2 2 THR B 117 ? SER B 122 ? THR B 117 SER B 122 AA2 3 ALA B 92 ? THR B 99 ? ALA B 92 THR B 99 AA2 4 VAL B 33 ? GLN B 39 ? VAL B 33 GLN B 39 AA2 5 GLU B 46 ? ILE B 51 ? GLU B 46 ILE B 51 AA2 6 THR B 58 ? HIS B 60 ? THR B 58 HIS B 60 AA3 1 LEU B 11 ? ARG B 13 ? LEU B 11 ARG B 13 AA3 2 THR B 117 ? SER B 122 ? THR B 117 SER B 122 AA3 3 ALA B 92 ? THR B 99 ? ALA B 92 THR B 99 AA3 4 SER B 112 ? TRP B 113 ? SER B 112 TRP B 113 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER B 7 ? N SER B 7 O SER B 21 ? O SER B 21 AA1 2 3 N LEU B 18 ? N LEU B 18 O MET B 83 ? O MET B 83 AA1 3 4 O GLN B 82 ? O GLN B 82 N THR B 69 ? N THR B 69 AA2 1 2 N VAL B 12 ? N VAL B 12 O THR B 120 ? O THR B 120 AA2 2 3 O VAL B 119 ? O VAL B 119 N ALA B 92 ? N ALA B 92 AA2 3 4 O THR B 99 ? O THR B 99 N VAL B 33 ? N VAL B 33 AA2 4 5 N TRP B 36 ? N TRP B 36 O VAL B 48 ? O VAL B 48 AA2 5 6 N ALA B 50 ? N ALA B 50 O TRP B 59 ? O TRP B 59 AA3 1 2 N VAL B 12 ? N VAL B 12 O THR B 120 ? O THR B 120 AA3 2 3 O VAL B 119 ? O VAL B 119 N ALA B 92 ? N ALA B 92 AA3 3 4 N ALA B 98 ? N ALA B 98 O SER B 112 ? O SER B 112 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PGE 301 ? 7 'binding site for residue PGE A 301' AC2 Software B EDO 201 ? 4 'binding site for residue EDO B 201' AC3 Software B ACY 202 ? 5 'binding site for residue ACY B 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLY A 1 ? GLY A 112 . ? 2_555 ? 2 AC1 7 GLU A 9 ? GLU A 120 . ? 1_555 ? 3 AC1 7 PHE A 13 ? PHE A 124 . ? 1_555 ? 4 AC1 7 ASP A 16 ? ASP A 127 . ? 1_555 ? 5 AC1 7 THR A 17 ? THR A 128 . ? 1_555 ? 6 AC1 7 LYS A 20 ? LYS A 131 . ? 1_555 ? 7 AC1 7 GLN A 28 ? GLN A 139 . ? 1_555 ? 8 AC2 4 SER A 53 ? SER A 164 . ? 1_555 ? 9 AC2 4 THR B 52 ? THR B 52 . ? 1_555 ? 10 AC2 4 ASP B 56 ? ASP B 56 . ? 1_555 ? 11 AC2 4 HOH G . ? HOH B 301 . ? 1_555 ? 12 AC3 5 ARG B 10 ? ARG B 10 . ? 1_555 ? 13 AC3 5 LEU B 11 ? LEU B 11 . ? 1_555 ? 14 AC3 5 GLN B 118 ? GLN B 118 . ? 1_555 ? 15 AC3 5 THR B 120 ? THR B 120 . ? 2_565 ? 16 AC3 5 THR B 120 ? THR B 120 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 135 ? ? 84.46 26.08 2 1 CYS A 153 ? A -160.25 118.04 3 1 VAL A 172 ? ? -121.90 -68.32 4 1 ALA B 92 ? ? 179.23 166.60 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x+1/2,y+1/2,-z 4 -x,-y,z # _pdbx_entry_details.entry_id 6Z1V _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 192 ? A ALA 81 2 1 Y 1 A ALA 193 ? A ALA 82 3 1 Y 1 A ALA 194 ? A ALA 83 4 1 Y 1 A HIS 195 ? A HIS 84 5 1 Y 1 A HIS 196 ? A HIS 85 6 1 Y 1 A HIS 197 ? A HIS 86 7 1 Y 1 A HIS 198 ? A HIS 87 8 1 Y 1 A HIS 199 ? A HIS 88 9 1 Y 1 A HIS 200 ? A HIS 89 10 1 Y 1 B HIS 124 ? B HIS 124 11 1 Y 1 B GLY 125 ? B GLY 125 12 1 Y 1 B SER 126 ? B SER 126 13 1 Y 1 B GLY 127 ? B GLY 127 14 1 Y 1 B LEU 128 ? B LEU 128 15 1 Y 1 B VAL 129 ? B VAL 129 16 1 Y 1 B PRO 130 ? B PRO 130 17 1 Y 1 B ARG 131 ? B ARG 131 18 1 Y 1 B GLY 132 ? B GLY 132 19 1 Y 1 B SER 133 ? B SER 133 20 1 Y 1 B GLY 134 ? B GLY 134 21 1 Y 1 B GLY 135 ? B GLY 135 22 1 Y 1 B GLY 136 ? B GLY 136 23 1 Y 1 B HIS 137 ? B HIS 137 24 1 Y 1 B HIS 138 ? B HIS 138 25 1 Y 1 B HIS 139 ? B HIS 139 26 1 Y 1 B HIS 140 ? B HIS 140 27 1 Y 1 B HIS 141 ? B HIS 141 28 1 Y 1 B HIS 142 ? B HIS 142 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACY C C N N 1 ACY O O N N 2 ACY OXT O N N 3 ACY CH3 C N N 4 ACY HXT H N N 5 ACY H1 H N N 6 ACY H2 H N N 7 ACY H3 H N N 8 ALA N N N N 9 ALA CA C N S 10 ALA C C N N 11 ALA O O N N 12 ALA CB C N N 13 ALA OXT O N N 14 ALA H H N N 15 ALA H2 H N N 16 ALA HA H N N 17 ALA HB1 H N N 18 ALA HB2 H N N 19 ALA HB3 H N N 20 ALA HXT H N N 21 ARG N N N N 22 ARG CA C N S 23 ARG C C N N 24 ARG O O N N 25 ARG CB C N N 26 ARG CG C N N 27 ARG CD C N N 28 ARG NE N N N 29 ARG CZ C N N 30 ARG NH1 N N N 31 ARG NH2 N N N 32 ARG OXT O N N 33 ARG H H N N 34 ARG H2 H N N 35 ARG HA H N N 36 ARG HB2 H N N 37 ARG HB3 H N N 38 ARG HG2 H N N 39 ARG HG3 H N N 40 ARG HD2 H N N 41 ARG HD3 H N N 42 ARG HE H N N 43 ARG HH11 H N N 44 ARG HH12 H N N 45 ARG HH21 H N N 46 ARG HH22 H N N 47 ARG HXT H N N 48 ASN N N N N 49 ASN CA C N S 50 ASN C C N N 51 ASN O O N N 52 ASN CB C N N 53 ASN CG C N N 54 ASN OD1 O N N 55 ASN ND2 N N N 56 ASN OXT O N N 57 ASN H H N N 58 ASN H2 H N N 59 ASN HA H N N 60 ASN HB2 H N N 61 ASN HB3 H N N 62 ASN HD21 H N N 63 ASN HD22 H N N 64 ASN HXT H N N 65 ASP N N N N 66 ASP CA C N S 67 ASP C C N N 68 ASP O O N N 69 ASP CB C N N 70 ASP CG C N N 71 ASP OD1 O N N 72 ASP OD2 O N N 73 ASP OXT O N N 74 ASP H H N N 75 ASP H2 H N N 76 ASP HA H N N 77 ASP HB2 H N N 78 ASP HB3 H N N 79 ASP HD2 H N N 80 ASP HXT H N N 81 CYS N N N N 82 CYS CA C N R 83 CYS C C N N 84 CYS O O N N 85 CYS CB C N N 86 CYS SG S N N 87 CYS OXT O N N 88 CYS H H N N 89 CYS H2 H N N 90 CYS HA H N N 91 CYS HB2 H N N 92 CYS HB3 H N N 93 CYS HG H N N 94 CYS HXT H N N 95 EDO C1 C N N 96 EDO O1 O N N 97 EDO C2 C N N 98 EDO O2 O N N 99 EDO H11 H N N 100 EDO H12 H N N 101 EDO HO1 H N N 102 EDO H21 H N N 103 EDO H22 H N N 104 EDO HO2 H N N 105 GLN N N N N 106 GLN CA C N S 107 GLN C C N N 108 GLN O O N N 109 GLN CB C N N 110 GLN CG C N N 111 GLN CD C N N 112 GLN OE1 O N N 113 GLN NE2 N N N 114 GLN OXT O N N 115 GLN H H N N 116 GLN H2 H N N 117 GLN HA H N N 118 GLN HB2 H N N 119 GLN HB3 H N N 120 GLN HG2 H N N 121 GLN HG3 H N N 122 GLN HE21 H N N 123 GLN HE22 H N N 124 GLN HXT H N N 125 GLU N N N N 126 GLU CA C N S 127 GLU C C N N 128 GLU O O N N 129 GLU CB C N N 130 GLU CG C N N 131 GLU CD C N N 132 GLU OE1 O N N 133 GLU OE2 O N N 134 GLU OXT O N N 135 GLU H H N N 136 GLU H2 H N N 137 GLU HA H N N 138 GLU HB2 H N N 139 GLU HB3 H N N 140 GLU HG2 H N N 141 GLU HG3 H N N 142 GLU HE2 H N N 143 GLU HXT H N N 144 GLY N N N N 145 GLY CA C N N 146 GLY C C N N 147 GLY O O N N 148 GLY OXT O N N 149 GLY H H N N 150 GLY H2 H N N 151 GLY HA2 H N N 152 GLY HA3 H N N 153 GLY HXT H N N 154 HIS N N N N 155 HIS CA C N S 156 HIS C C N N 157 HIS O O N N 158 HIS CB C N N 159 HIS CG C Y N 160 HIS ND1 N Y N 161 HIS CD2 C Y N 162 HIS CE1 C Y N 163 HIS NE2 N Y N 164 HIS OXT O N N 165 HIS H H N N 166 HIS H2 H N N 167 HIS HA H N N 168 HIS HB2 H N N 169 HIS HB3 H N N 170 HIS HD1 H N N 171 HIS HD2 H N N 172 HIS HE1 H N N 173 HIS HE2 H N N 174 HIS HXT H N N 175 HOH O O N N 176 HOH H1 H N N 177 HOH H2 H N N 178 ILE N N N N 179 ILE CA C N S 180 ILE C C N N 181 ILE O O N N 182 ILE CB C N S 183 ILE CG1 C N N 184 ILE CG2 C N N 185 ILE CD1 C N N 186 ILE OXT O N N 187 ILE H H N N 188 ILE H2 H N N 189 ILE HA H N N 190 ILE HB H N N 191 ILE HG12 H N N 192 ILE HG13 H N N 193 ILE HG21 H N N 194 ILE HG22 H N N 195 ILE HG23 H N N 196 ILE HD11 H N N 197 ILE HD12 H N N 198 ILE HD13 H N N 199 ILE HXT H N N 200 LEU N N N N 201 LEU CA C N S 202 LEU C C N N 203 LEU O O N N 204 LEU CB C N N 205 LEU CG C N N 206 LEU CD1 C N N 207 LEU CD2 C N N 208 LEU OXT O N N 209 LEU H H N N 210 LEU H2 H N N 211 LEU HA H N N 212 LEU HB2 H N N 213 LEU HB3 H N N 214 LEU HG H N N 215 LEU HD11 H N N 216 LEU HD12 H N N 217 LEU HD13 H N N 218 LEU HD21 H N N 219 LEU HD22 H N N 220 LEU HD23 H N N 221 LEU HXT H N N 222 LYS N N N N 223 LYS CA C N S 224 LYS C C N N 225 LYS O O N N 226 LYS CB C N N 227 LYS CG C N N 228 LYS CD C N N 229 LYS CE C N N 230 LYS NZ N N N 231 LYS OXT O N N 232 LYS H H N N 233 LYS H2 H N N 234 LYS HA H N N 235 LYS HB2 H N N 236 LYS HB3 H N N 237 LYS HG2 H N N 238 LYS HG3 H N N 239 LYS HD2 H N N 240 LYS HD3 H N N 241 LYS HE2 H N N 242 LYS HE3 H N N 243 LYS HZ1 H N N 244 LYS HZ2 H N N 245 LYS HZ3 H N N 246 LYS HXT H N N 247 MET N N N N 248 MET CA C N S 249 MET C C N N 250 MET O O N N 251 MET CB C N N 252 MET CG C N N 253 MET SD S N N 254 MET CE C N N 255 MET OXT O N N 256 MET H H N N 257 MET H2 H N N 258 MET HA H N N 259 MET HB2 H N N 260 MET HB3 H N N 261 MET HG2 H N N 262 MET HG3 H N N 263 MET HE1 H N N 264 MET HE2 H N N 265 MET HE3 H N N 266 MET HXT H N N 267 PGE C1 C N N 268 PGE O1 O N N 269 PGE C2 C N N 270 PGE O2 O N N 271 PGE C3 C N N 272 PGE C4 C N N 273 PGE O4 O N N 274 PGE C6 C N N 275 PGE C5 C N N 276 PGE O3 O N N 277 PGE H1 H N N 278 PGE H12 H N N 279 PGE HO1 H N N 280 PGE H2 H N N 281 PGE H22 H N N 282 PGE H3 H N N 283 PGE H32 H N N 284 PGE H4 H N N 285 PGE H42 H N N 286 PGE HO4 H N N 287 PGE H6 H N N 288 PGE H62 H N N 289 PGE H5 H N N 290 PGE H52 H N N 291 PHE N N N N 292 PHE CA C N S 293 PHE C C N N 294 PHE O O N N 295 PHE CB C N N 296 PHE CG C Y N 297 PHE CD1 C Y N 298 PHE CD2 C Y N 299 PHE CE1 C Y N 300 PHE CE2 C Y N 301 PHE CZ C Y N 302 PHE OXT O N N 303 PHE H H N N 304 PHE H2 H N N 305 PHE HA H N N 306 PHE HB2 H N N 307 PHE HB3 H N N 308 PHE HD1 H N N 309 PHE HD2 H N N 310 PHE HE1 H N N 311 PHE HE2 H N N 312 PHE HZ H N N 313 PHE HXT H N N 314 PRO N N N N 315 PRO CA C N S 316 PRO C C N N 317 PRO O O N N 318 PRO CB C N N 319 PRO CG C N N 320 PRO CD C N N 321 PRO OXT O N N 322 PRO H H N N 323 PRO HA H N N 324 PRO HB2 H N N 325 PRO HB3 H N N 326 PRO HG2 H N N 327 PRO HG3 H N N 328 PRO HD2 H N N 329 PRO HD3 H N N 330 PRO HXT H N N 331 SER N N N N 332 SER CA C N S 333 SER C C N N 334 SER O O N N 335 SER CB C N N 336 SER OG O N N 337 SER OXT O N N 338 SER H H N N 339 SER H2 H N N 340 SER HA H N N 341 SER HB2 H N N 342 SER HB3 H N N 343 SER HG H N N 344 SER HXT H N N 345 THR N N N N 346 THR CA C N S 347 THR C C N N 348 THR O O N N 349 THR CB C N R 350 THR OG1 O N N 351 THR CG2 C N N 352 THR OXT O N N 353 THR H H N N 354 THR H2 H N N 355 THR HA H N N 356 THR HB H N N 357 THR HG1 H N N 358 THR HG21 H N N 359 THR HG22 H N N 360 THR HG23 H N N 361 THR HXT H N N 362 TRP N N N N 363 TRP CA C N S 364 TRP C C N N 365 TRP O O N N 366 TRP CB C N N 367 TRP CG C Y N 368 TRP CD1 C Y N 369 TRP CD2 C Y N 370 TRP NE1 N Y N 371 TRP CE2 C Y N 372 TRP CE3 C Y N 373 TRP CZ2 C Y N 374 TRP CZ3 C Y N 375 TRP CH2 C Y N 376 TRP OXT O N N 377 TRP H H N N 378 TRP H2 H N N 379 TRP HA H N N 380 TRP HB2 H N N 381 TRP HB3 H N N 382 TRP HD1 H N N 383 TRP HE1 H N N 384 TRP HE3 H N N 385 TRP HZ2 H N N 386 TRP HZ3 H N N 387 TRP HH2 H N N 388 TRP HXT H N N 389 TYR N N N N 390 TYR CA C N S 391 TYR C C N N 392 TYR O O N N 393 TYR CB C N N 394 TYR CG C Y N 395 TYR CD1 C Y N 396 TYR CD2 C Y N 397 TYR CE1 C Y N 398 TYR CE2 C Y N 399 TYR CZ C Y N 400 TYR OH O N N 401 TYR OXT O N N 402 TYR H H N N 403 TYR H2 H N N 404 TYR HA H N N 405 TYR HB2 H N N 406 TYR HB3 H N N 407 TYR HD1 H N N 408 TYR HD2 H N N 409 TYR HE1 H N N 410 TYR HE2 H N N 411 TYR HH H N N 412 TYR HXT H N N 413 VAL N N N N 414 VAL CA C N S 415 VAL C C N N 416 VAL O O N N 417 VAL CB C N N 418 VAL CG1 C N N 419 VAL CG2 C N N 420 VAL OXT O N N 421 VAL H H N N 422 VAL H2 H N N 423 VAL HA H N N 424 VAL HB H N N 425 VAL HG11 H N N 426 VAL HG12 H N N 427 VAL HG13 H N N 428 VAL HG21 H N N 429 VAL HG22 H N N 430 VAL HG23 H N N 431 VAL HXT H N N 432 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACY C O doub N N 1 ACY C OXT sing N N 2 ACY C CH3 sing N N 3 ACY OXT HXT sing N N 4 ACY CH3 H1 sing N N 5 ACY CH3 H2 sing N N 6 ACY CH3 H3 sing N N 7 ALA N CA sing N N 8 ALA N H sing N N 9 ALA N H2 sing N N 10 ALA CA C sing N N 11 ALA CA CB sing N N 12 ALA CA HA sing N N 13 ALA C O doub N N 14 ALA C OXT sing N N 15 ALA CB HB1 sing N N 16 ALA CB HB2 sing N N 17 ALA CB HB3 sing N N 18 ALA OXT HXT sing N N 19 ARG N CA sing N N 20 ARG N H sing N N 21 ARG N H2 sing N N 22 ARG CA C sing N N 23 ARG CA CB sing N N 24 ARG CA HA sing N N 25 ARG C O doub N N 26 ARG C OXT sing N N 27 ARG CB CG sing N N 28 ARG CB HB2 sing N N 29 ARG CB HB3 sing N N 30 ARG CG CD sing N N 31 ARG CG HG2 sing N N 32 ARG CG HG3 sing N N 33 ARG CD NE sing N N 34 ARG CD HD2 sing N N 35 ARG CD HD3 sing N N 36 ARG NE CZ sing N N 37 ARG NE HE sing N N 38 ARG CZ NH1 sing N N 39 ARG CZ NH2 doub N N 40 ARG NH1 HH11 sing N N 41 ARG NH1 HH12 sing N N 42 ARG NH2 HH21 sing N N 43 ARG NH2 HH22 sing N N 44 ARG OXT HXT sing N N 45 ASN N CA sing N N 46 ASN N H sing N N 47 ASN N H2 sing N N 48 ASN CA C sing N N 49 ASN CA CB sing N N 50 ASN CA HA sing N N 51 ASN C O doub N N 52 ASN C OXT sing N N 53 ASN CB CG sing N N 54 ASN CB HB2 sing N N 55 ASN CB HB3 sing N N 56 ASN CG OD1 doub N N 57 ASN CG ND2 sing N N 58 ASN ND2 HD21 sing N N 59 ASN ND2 HD22 sing N N 60 ASN OXT HXT sing N N 61 ASP N CA sing N N 62 ASP N H sing N N 63 ASP N H2 sing N N 64 ASP CA C sing N N 65 ASP CA CB sing N N 66 ASP CA HA sing N N 67 ASP C O doub N N 68 ASP C OXT sing N N 69 ASP CB CG sing N N 70 ASP CB HB2 sing N N 71 ASP CB HB3 sing N N 72 ASP CG OD1 doub N N 73 ASP CG OD2 sing N N 74 ASP OD2 HD2 sing N N 75 ASP OXT HXT sing N N 76 CYS N CA sing N N 77 CYS N H sing N N 78 CYS N H2 sing N N 79 CYS CA C sing N N 80 CYS CA CB sing N N 81 CYS CA HA sing N N 82 CYS C O doub N N 83 CYS C OXT sing N N 84 CYS CB SG sing N N 85 CYS CB HB2 sing N N 86 CYS CB HB3 sing N N 87 CYS SG HG sing N N 88 CYS OXT HXT sing N N 89 EDO C1 O1 sing N N 90 EDO C1 C2 sing N N 91 EDO C1 H11 sing N N 92 EDO C1 H12 sing N N 93 EDO O1 HO1 sing N N 94 EDO C2 O2 sing N N 95 EDO C2 H21 sing N N 96 EDO C2 H22 sing N N 97 EDO O2 HO2 sing N N 98 GLN N CA sing N N 99 GLN N H sing N N 100 GLN N H2 sing N N 101 GLN CA C sing N N 102 GLN CA CB sing N N 103 GLN CA HA sing N N 104 GLN C O doub N N 105 GLN C OXT sing N N 106 GLN CB CG sing N N 107 GLN CB HB2 sing N N 108 GLN CB HB3 sing N N 109 GLN CG CD sing N N 110 GLN CG HG2 sing N N 111 GLN CG HG3 sing N N 112 GLN CD OE1 doub N N 113 GLN CD NE2 sing N N 114 GLN NE2 HE21 sing N N 115 GLN NE2 HE22 sing N N 116 GLN OXT HXT sing N N 117 GLU N CA sing N N 118 GLU N H sing N N 119 GLU N H2 sing N N 120 GLU CA C sing N N 121 GLU CA CB sing N N 122 GLU CA HA sing N N 123 GLU C O doub N N 124 GLU C OXT sing N N 125 GLU CB CG sing N N 126 GLU CB HB2 sing N N 127 GLU CB HB3 sing N N 128 GLU CG CD sing N N 129 GLU CG HG2 sing N N 130 GLU CG HG3 sing N N 131 GLU CD OE1 doub N N 132 GLU CD OE2 sing N N 133 GLU OE2 HE2 sing N N 134 GLU OXT HXT sing N N 135 GLY N CA sing N N 136 GLY N H sing N N 137 GLY N H2 sing N N 138 GLY CA C sing N N 139 GLY CA HA2 sing N N 140 GLY CA HA3 sing N N 141 GLY C O doub N N 142 GLY C OXT sing N N 143 GLY OXT HXT sing N N 144 HIS N CA sing N N 145 HIS N H sing N N 146 HIS N H2 sing N N 147 HIS CA C sing N N 148 HIS CA CB sing N N 149 HIS CA HA sing N N 150 HIS C O doub N N 151 HIS C OXT sing N N 152 HIS CB CG sing N N 153 HIS CB HB2 sing N N 154 HIS CB HB3 sing N N 155 HIS CG ND1 sing Y N 156 HIS CG CD2 doub Y N 157 HIS ND1 CE1 doub Y N 158 HIS ND1 HD1 sing N N 159 HIS CD2 NE2 sing Y N 160 HIS CD2 HD2 sing N N 161 HIS CE1 NE2 sing Y N 162 HIS CE1 HE1 sing N N 163 HIS NE2 HE2 sing N N 164 HIS OXT HXT sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 ILE N CA sing N N 168 ILE N H sing N N 169 ILE N H2 sing N N 170 ILE CA C sing N N 171 ILE CA CB sing N N 172 ILE CA HA sing N N 173 ILE C O doub N N 174 ILE C OXT sing N N 175 ILE CB CG1 sing N N 176 ILE CB CG2 sing N N 177 ILE CB HB sing N N 178 ILE CG1 CD1 sing N N 179 ILE CG1 HG12 sing N N 180 ILE CG1 HG13 sing N N 181 ILE CG2 HG21 sing N N 182 ILE CG2 HG22 sing N N 183 ILE CG2 HG23 sing N N 184 ILE CD1 HD11 sing N N 185 ILE CD1 HD12 sing N N 186 ILE CD1 HD13 sing N N 187 ILE OXT HXT sing N N 188 LEU N CA sing N N 189 LEU N H sing N N 190 LEU N H2 sing N N 191 LEU CA C sing N N 192 LEU CA CB sing N N 193 LEU CA HA sing N N 194 LEU C O doub N N 195 LEU C OXT sing N N 196 LEU CB CG sing N N 197 LEU CB HB2 sing N N 198 LEU CB HB3 sing N N 199 LEU CG CD1 sing N N 200 LEU CG CD2 sing N N 201 LEU CG HG sing N N 202 LEU CD1 HD11 sing N N 203 LEU CD1 HD12 sing N N 204 LEU CD1 HD13 sing N N 205 LEU CD2 HD21 sing N N 206 LEU CD2 HD22 sing N N 207 LEU CD2 HD23 sing N N 208 LEU OXT HXT sing N N 209 LYS N CA sing N N 210 LYS N H sing N N 211 LYS N H2 sing N N 212 LYS CA C sing N N 213 LYS CA CB sing N N 214 LYS CA HA sing N N 215 LYS C O doub N N 216 LYS C OXT sing N N 217 LYS CB CG sing N N 218 LYS CB HB2 sing N N 219 LYS CB HB3 sing N N 220 LYS CG CD sing N N 221 LYS CG HG2 sing N N 222 LYS CG HG3 sing N N 223 LYS CD CE sing N N 224 LYS CD HD2 sing N N 225 LYS CD HD3 sing N N 226 LYS CE NZ sing N N 227 LYS CE HE2 sing N N 228 LYS CE HE3 sing N N 229 LYS NZ HZ1 sing N N 230 LYS NZ HZ2 sing N N 231 LYS NZ HZ3 sing N N 232 LYS OXT HXT sing N N 233 MET N CA sing N N 234 MET N H sing N N 235 MET N H2 sing N N 236 MET CA C sing N N 237 MET CA CB sing N N 238 MET CA HA sing N N 239 MET C O doub N N 240 MET C OXT sing N N 241 MET CB CG sing N N 242 MET CB HB2 sing N N 243 MET CB HB3 sing N N 244 MET CG SD sing N N 245 MET CG HG2 sing N N 246 MET CG HG3 sing N N 247 MET SD CE sing N N 248 MET CE HE1 sing N N 249 MET CE HE2 sing N N 250 MET CE HE3 sing N N 251 MET OXT HXT sing N N 252 PGE C1 O1 sing N N 253 PGE C1 C2 sing N N 254 PGE C1 H1 sing N N 255 PGE C1 H12 sing N N 256 PGE O1 HO1 sing N N 257 PGE C2 O2 sing N N 258 PGE C2 H2 sing N N 259 PGE C2 H22 sing N N 260 PGE O2 C3 sing N N 261 PGE C3 C4 sing N N 262 PGE C3 H3 sing N N 263 PGE C3 H32 sing N N 264 PGE C4 O3 sing N N 265 PGE C4 H4 sing N N 266 PGE C4 H42 sing N N 267 PGE O4 C6 sing N N 268 PGE O4 HO4 sing N N 269 PGE C6 C5 sing N N 270 PGE C6 H6 sing N N 271 PGE C6 H62 sing N N 272 PGE C5 O3 sing N N 273 PGE C5 H5 sing N N 274 PGE C5 H52 sing N N 275 PHE N CA sing N N 276 PHE N H sing N N 277 PHE N H2 sing N N 278 PHE CA C sing N N 279 PHE CA CB sing N N 280 PHE CA HA sing N N 281 PHE C O doub N N 282 PHE C OXT sing N N 283 PHE CB CG sing N N 284 PHE CB HB2 sing N N 285 PHE CB HB3 sing N N 286 PHE CG CD1 doub Y N 287 PHE CG CD2 sing Y N 288 PHE CD1 CE1 sing Y N 289 PHE CD1 HD1 sing N N 290 PHE CD2 CE2 doub Y N 291 PHE CD2 HD2 sing N N 292 PHE CE1 CZ doub Y N 293 PHE CE1 HE1 sing N N 294 PHE CE2 CZ sing Y N 295 PHE CE2 HE2 sing N N 296 PHE CZ HZ sing N N 297 PHE OXT HXT sing N N 298 PRO N CA sing N N 299 PRO N CD sing N N 300 PRO N H sing N N 301 PRO CA C sing N N 302 PRO CA CB sing N N 303 PRO CA HA sing N N 304 PRO C O doub N N 305 PRO C OXT sing N N 306 PRO CB CG sing N N 307 PRO CB HB2 sing N N 308 PRO CB HB3 sing N N 309 PRO CG CD sing N N 310 PRO CG HG2 sing N N 311 PRO CG HG3 sing N N 312 PRO CD HD2 sing N N 313 PRO CD HD3 sing N N 314 PRO OXT HXT sing N N 315 SER N CA sing N N 316 SER N H sing N N 317 SER N H2 sing N N 318 SER CA C sing N N 319 SER CA CB sing N N 320 SER CA HA sing N N 321 SER C O doub N N 322 SER C OXT sing N N 323 SER CB OG sing N N 324 SER CB HB2 sing N N 325 SER CB HB3 sing N N 326 SER OG HG sing N N 327 SER OXT HXT sing N N 328 THR N CA sing N N 329 THR N H sing N N 330 THR N H2 sing N N 331 THR CA C sing N N 332 THR CA CB sing N N 333 THR CA HA sing N N 334 THR C O doub N N 335 THR C OXT sing N N 336 THR CB OG1 sing N N 337 THR CB CG2 sing N N 338 THR CB HB sing N N 339 THR OG1 HG1 sing N N 340 THR CG2 HG21 sing N N 341 THR CG2 HG22 sing N N 342 THR CG2 HG23 sing N N 343 THR OXT HXT sing N N 344 TRP N CA sing N N 345 TRP N H sing N N 346 TRP N H2 sing N N 347 TRP CA C sing N N 348 TRP CA CB sing N N 349 TRP CA HA sing N N 350 TRP C O doub N N 351 TRP C OXT sing N N 352 TRP CB CG sing N N 353 TRP CB HB2 sing N N 354 TRP CB HB3 sing N N 355 TRP CG CD1 doub Y N 356 TRP CG CD2 sing Y N 357 TRP CD1 NE1 sing Y N 358 TRP CD1 HD1 sing N N 359 TRP CD2 CE2 doub Y N 360 TRP CD2 CE3 sing Y N 361 TRP NE1 CE2 sing Y N 362 TRP NE1 HE1 sing N N 363 TRP CE2 CZ2 sing Y N 364 TRP CE3 CZ3 doub Y N 365 TRP CE3 HE3 sing N N 366 TRP CZ2 CH2 doub Y N 367 TRP CZ2 HZ2 sing N N 368 TRP CZ3 CH2 sing Y N 369 TRP CZ3 HZ3 sing N N 370 TRP CH2 HH2 sing N N 371 TRP OXT HXT sing N N 372 TYR N CA sing N N 373 TYR N H sing N N 374 TYR N H2 sing N N 375 TYR CA C sing N N 376 TYR CA CB sing N N 377 TYR CA HA sing N N 378 TYR C O doub N N 379 TYR C OXT sing N N 380 TYR CB CG sing N N 381 TYR CB HB2 sing N N 382 TYR CB HB3 sing N N 383 TYR CG CD1 doub Y N 384 TYR CG CD2 sing Y N 385 TYR CD1 CE1 sing Y N 386 TYR CD1 HD1 sing N N 387 TYR CD2 CE2 doub Y N 388 TYR CD2 HD2 sing N N 389 TYR CE1 CZ doub Y N 390 TYR CE1 HE1 sing N N 391 TYR CE2 CZ sing Y N 392 TYR CE2 HE2 sing N N 393 TYR CZ OH sing N N 394 TYR OH HH sing N N 395 TYR OXT HXT sing N N 396 VAL N CA sing N N 397 VAL N H sing N N 398 VAL N H2 sing N N 399 VAL CA C sing N N 400 VAL CA CB sing N N 401 VAL CA HA sing N N 402 VAL C O doub N N 403 VAL C OXT sing N N 404 VAL CB CG1 sing N N 405 VAL CB CG2 sing N N 406 VAL CB HB sing N N 407 VAL CG1 HG11 sing N N 408 VAL CG1 HG12 sing N N 409 VAL CG1 HG13 sing N N 410 VAL CG2 HG21 sing N N 411 VAL CG2 HG22 sing N N 412 VAL CG2 HG23 sing N N 413 VAL OXT HXT sing N N 414 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Netherlands Organisation for Scientific Research (NWO)' Netherlands 731.015.201 1 'Netherlands Organisation for Scientific Research (NWO)' Netherlands 024.002.009 2 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details 'Structure of CD9EC2 bound to nanobody 4C8' # _space_group.name_H-M_alt 'P 21 21 2' _space_group.name_Hall 'P 2 2ab' _space_group.IT_number 18 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 6Z1V _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.016255 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011180 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028024 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_