HEADER TRANSCRIPTION 10-JUL-20 6ZQS TITLE CRYSTAL STRUCTURE OF DOUBLE-PHOSPHORYLATED P38ALPHA WITH ATF2(83-102) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAPK 14,CYTOKINE SUPPRESSIVE ANTI-INFLAMMATORY DRUG-BINDING COMPND 5 PROTEIN,CSBP,MAP KINASE MXI2,MAX-INTERACTING PROTEIN 2,MITOGEN- COMPND 6 ACTIVATED PROTEIN KINASE P38 ALPHA,MAP KINASE P38 ALPHA,STRESS- COMPND 7 ACTIVATED PROTEIN KINASE 2A,SAPK2A; COMPND 8 EC: 2.7.11.24; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CYCLIC AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-2; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: CAMP-DEPENDENT TRANSCRIPTION FACTOR ATF-2,ACTIVATING COMPND 14 TRANSCRIPTION FACTOR 2,CYCLIC AMP-RESPONSIVE ELEMENT-BINDING PROTEIN COMPND 15 2,CAMP-RESPONSIVE ELEMENT-BINDING PROTEIN 2,HB16,HISTONE COMPND 16 ACETYLTRANSFERASE ATF2,CAMP RESPONSE ELEMENT-BINDING PROTEIN CRE-BP1; COMPND 17 EC: 2.3.1.48; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK14, CSBP, CSBP1, CSBP2, CSPB1, MXI2, SAPK2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET DERIVATIVE; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION, MAPK SIGNALING PATHWAYS EXPDTA X-RAY DIFFRACTION AUTHOR K.KIRSCH,P.SOK,A.L.POTI,A.REMENYI REVDAT 3 31-JAN-24 6ZQS 1 REMARK REVDAT 2 25-NOV-20 6ZQS 1 JRNL REVDAT 1 18-NOV-20 6ZQS 0 JRNL AUTH K.KIRSCH,A.ZEKE,O.TOKE,P.SOK,A.SETHI,A.SEBO,G.S.KUMAR, JRNL AUTH 2 P.EGRI,A.L.POTI,P.GOOLEY,W.PETI,I.BENTO,A.ALEXA,A.REMENYI JRNL TITL CO-REGULATION OF THE TRANSCRIPTION CONTROLLING ATF2 JRNL TITL 2 PHOSPHOSWITCH BY JNK AND P38. JRNL REF NAT COMMUN V. 11 5769 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33188182 JRNL DOI 10.1038/S41467-020-19582-3 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 30380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.6200 - 4.3400 1.00 2860 141 0.1729 0.2142 REMARK 3 2 4.3400 - 3.4400 1.00 2694 145 0.1465 0.1754 REMARK 3 3 3.4400 - 3.0100 1.00 2661 135 0.1645 0.2201 REMARK 3 4 3.0100 - 2.7300 1.00 2671 135 0.1807 0.2628 REMARK 3 5 2.7300 - 2.5400 1.00 2651 139 0.1831 0.2494 REMARK 3 6 2.5400 - 2.3900 1.00 2618 135 0.1944 0.2783 REMARK 3 7 2.3900 - 2.2700 1.00 2613 135 0.1936 0.2503 REMARK 3 8 2.2700 - 2.1700 1.00 2596 136 0.1968 0.2290 REMARK 3 9 2.1700 - 2.0900 1.00 2586 160 0.2101 0.2666 REMARK 3 10 2.0800 - 2.0100 0.99 2592 148 0.2312 0.2477 REMARK 3 11 2.0100 - 1.9500 0.89 2336 93 0.2840 0.3638 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.227 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2988 REMARK 3 ANGLE : 1.086 4070 REMARK 3 CHIRALITY : 0.058 456 REMARK 3 PLANARITY : 0.006 518 REMARK 3 DIHEDRAL : 17.434 407 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4459 -31.1436 -3.0093 REMARK 3 T TENSOR REMARK 3 T11: 0.4217 T22: 0.3851 REMARK 3 T33: 0.3851 T12: 0.0306 REMARK 3 T13: -0.0348 T23: -0.0773 REMARK 3 L TENSOR REMARK 3 L11: 6.8890 L22: 2.2212 REMARK 3 L33: 7.7672 L12: -2.0901 REMARK 3 L13: 1.5529 L23: -2.2395 REMARK 3 S TENSOR REMARK 3 S11: 0.2446 S12: -0.0815 S13: -0.3609 REMARK 3 S21: -0.3808 S22: -0.0891 S23: 0.7383 REMARK 3 S31: 0.1841 S32: -0.7363 S33: -0.1598 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8985 -32.0747 21.5872 REMARK 3 T TENSOR REMARK 3 T11: 0.2505 T22: 0.2970 REMARK 3 T33: 0.2768 T12: -0.0481 REMARK 3 T13: -0.0118 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.0218 L22: 1.4970 REMARK 3 L33: 2.5387 L12: -0.2861 REMARK 3 L13: 0.1295 L23: -0.3590 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: -0.1126 S13: -0.0167 REMARK 3 S21: 0.0946 S22: -0.0029 S23: 0.0264 REMARK 3 S31: 0.0643 S32: -0.0910 S33: -0.0496 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1921 -35.6382 28.8527 REMARK 3 T TENSOR REMARK 3 T11: 0.3319 T22: 0.3880 REMARK 3 T33: 0.3468 T12: -0.0225 REMARK 3 T13: -0.0949 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 2.5507 L22: 1.1131 REMARK 3 L33: 1.8743 L12: -0.9853 REMARK 3 L13: -0.4571 L23: 0.4767 REMARK 3 S TENSOR REMARK 3 S11: -0.1409 S12: -0.3013 S13: 0.2177 REMARK 3 S21: 0.1931 S22: 0.1219 S23: -0.3076 REMARK 3 S31: 0.1171 S32: 0.0941 S33: -0.0131 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6585 -14.1140 7.5201 REMARK 3 T TENSOR REMARK 3 T11: 0.3194 T22: 0.2126 REMARK 3 T33: 0.2983 T12: -0.0059 REMARK 3 T13: 0.0157 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 9.2824 L22: 7.2977 REMARK 3 L33: 6.6788 L12: -1.2797 REMARK 3 L13: -4.7398 L23: 1.6107 REMARK 3 S TENSOR REMARK 3 S11: 0.2263 S12: 0.2665 S13: 0.5703 REMARK 3 S21: -0.4262 S22: -0.0145 S23: -0.4026 REMARK 3 S31: -0.4593 S32: -0.0548 S33: -0.2486 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5235 -31.3855 39.5739 REMARK 3 T TENSOR REMARK 3 T11: 0.5351 T22: 0.8880 REMARK 3 T33: 0.5051 T12: -0.1081 REMARK 3 T13: 0.0103 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 6.8047 L22: 3.3061 REMARK 3 L33: 3.2556 L12: 1.8196 REMARK 3 L13: -2.2075 L23: -3.2657 REMARK 3 S TENSOR REMARK 3 S11: 0.0916 S12: -0.7287 S13: 0.5109 REMARK 3 S21: 0.5969 S22: 0.0452 S23: 0.8022 REMARK 3 S31: -0.0110 S32: -0.9344 S33: -0.2280 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30463 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 69.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 1.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6TCA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 3350, 0.1 M CACODYLATE PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.30100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.26650 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.30100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.26650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 629 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 704 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 ASP A 354 REMARK 465 GLN A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 MET A 358 REMARK 465 GLU A 359 REMARK 465 SER A 360 REMARK 465 GLY B 83 REMARK 465 LEU B 84 REMARK 465 PHE B 85 REMARK 465 ASN B 86 REMARK 465 GLU B 87 REMARK 465 ASP B 102 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 ASN A 14 CG OD1 ND2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 LYS A 121 CE NZ REMARK 470 ARG A 220 CD NE CZ NH1 NH2 REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 LYS A 248 CD CE NZ REMARK 470 GLN A 260 CD OE1 NE2 REMARK 470 GLN A 264 CD OE1 NE2 REMARK 470 LYS A 295 CE NZ REMARK 470 ASP A 324 CG OD1 OD2 REMARK 470 GLN A 325 CG CD OE1 NE2 REMARK 470 SER A 329 OG REMARK 470 ARG A 330 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 353 CG CD1 CD2 REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 LYS B 98 CD CE NZ REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 531 O HOH A 804 1.89 REMARK 500 O HOH A 561 O HOH A 804 2.05 REMARK 500 OE1 GLU A 71 O HOH A 501 2.06 REMARK 500 O HOH A 823 O HOH A 836 2.09 REMARK 500 O HOH A 834 O HOH A 838 2.09 REMARK 500 O HOH A 733 O HOH A 777 2.10 REMARK 500 O HOH A 756 O HOH B 204 2.10 REMARK 500 O HOH A 660 O HOH A 749 2.11 REMARK 500 O HOH A 730 O HOH A 762 2.12 REMARK 500 O HOH A 772 O HOH A 795 2.12 REMARK 500 O HOH A 689 O HOH A 690 2.13 REMARK 500 O HOH A 553 O HOH A 562 2.14 REMARK 500 O HOH A 706 O HOH A 739 2.15 REMARK 500 O HOH A 559 O HOH A 596 2.15 REMARK 500 O HOH A 509 O HOH A 752 2.16 REMARK 500 O HOH A 502 O HOH A 513 2.18 REMARK 500 O HOH A 669 O HOH A 709 2.18 REMARK 500 OH TYR A 323 OE2 GLU A 328 2.19 REMARK 500 O HOH A 693 O HOH A 757 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 640 O HOH A 785 1655 2.04 REMARK 500 O HOH A 507 O HOH A 636 2545 2.11 REMARK 500 O HOH A 761 O HOH A 813 1455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 247 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 64.24 -105.93 REMARK 500 ASN A 100 -11.53 -143.39 REMARK 500 ASP A 150 39.51 -154.44 REMARK 500 ASP A 168 89.64 58.72 REMARK 500 ALA A 184 161.94 73.87 REMARK 500 SER A 326 -70.86 -64.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3FF A 400 DBREF 6ZQS A 1 360 UNP Q16539 MK14_HUMAN 1 360 DBREF 6ZQS B 83 102 UNP P15336 ATF2_HUMAN 83 102 SEQADV 6ZQS GLY A -1 UNP Q16539 EXPRESSION TAG SEQADV 6ZQS SER A 0 UNP Q16539 EXPRESSION TAG SEQADV 6ZQS ASN B 90 UNP P15336 SER 90 ENGINEERED MUTATION SEQRES 1 A 362 GLY SER MET SER GLN GLU ARG PRO THR PHE TYR ARG GLN SEQRES 2 A 362 GLU LEU ASN LYS THR ILE TRP GLU VAL PRO GLU ARG TYR SEQRES 3 A 362 GLN ASN LEU SER PRO VAL GLY SER GLY ALA TYR GLY SER SEQRES 4 A 362 VAL CYS ALA ALA PHE ASP THR LYS THR GLY LEU ARG VAL SEQRES 5 A 362 ALA VAL LYS LYS LEU SER ARG PRO PHE GLN SER ILE ILE SEQRES 6 A 362 HIS ALA LYS ARG THR TYR ARG GLU LEU ARG LEU LEU LYS SEQRES 7 A 362 HIS MET LYS HIS GLU ASN VAL ILE GLY LEU LEU ASP VAL SEQRES 8 A 362 PHE THR PRO ALA ARG SER LEU GLU GLU PHE ASN ASP VAL SEQRES 9 A 362 TYR LEU VAL THR HIS LEU MET GLY ALA ASP LEU ASN ASN SEQRES 10 A 362 ILE VAL LYS CYS GLN LYS LEU THR ASP ASP HIS VAL GLN SEQRES 11 A 362 PHE LEU ILE TYR GLN ILE LEU ARG GLY LEU LYS TYR ILE SEQRES 12 A 362 HIS SER ALA ASP ILE ILE HIS ARG ASP LEU LYS PRO SER SEQRES 13 A 362 ASN LEU ALA VAL ASN GLU ASP CYS GLU LEU LYS ILE LEU SEQRES 14 A 362 ASP PHE GLY LEU ALA ARG HIS THR ASP ASP GLU MET TPO SEQRES 15 A 362 GLY PTR VAL ALA THR ARG TRP TYR ARG ALA PRO GLU ILE SEQRES 16 A 362 MET LEU ASN TRP MET HIS TYR ASN GLN THR VAL ASP ILE SEQRES 17 A 362 TRP SER VAL GLY CYS ILE MET ALA GLU LEU LEU THR GLY SEQRES 18 A 362 ARG THR LEU PHE PRO GLY THR ASP HIS ILE ASP GLN LEU SEQRES 19 A 362 LYS LEU ILE LEU ARG LEU VAL GLY THR PRO GLY ALA GLU SEQRES 20 A 362 LEU LEU LYS LYS ILE SER SER GLU SER ALA ARG ASN TYR SEQRES 21 A 362 ILE GLN SER LEU THR GLN MET PRO LYS MET ASN PHE ALA SEQRES 22 A 362 ASN VAL PHE ILE GLY ALA ASN PRO LEU ALA VAL ASP LEU SEQRES 23 A 362 LEU GLU LYS MET LEU VAL LEU ASP SER ASP LYS ARG ILE SEQRES 24 A 362 THR ALA ALA GLN ALA LEU ALA HIS ALA TYR PHE ALA GLN SEQRES 25 A 362 TYR HIS ASP PRO ASP ASP GLU PRO VAL ALA ASP PRO TYR SEQRES 26 A 362 ASP GLN SER PHE GLU SER ARG ASP LEU LEU ILE ASP GLU SEQRES 27 A 362 TRP LYS SER LEU THR TYR ASP GLU VAL ILE SER PHE VAL SEQRES 28 A 362 PRO PRO PRO LEU ASP GLN GLU GLU MET GLU SER SEQRES 1 B 20 GLY LEU PHE ASN GLU LEU ALA ASN PRO PHE GLU ASN GLU SEQRES 2 B 20 PHE LYS LYS ALA SER GLU ASP MODRES 6ZQS TPO A 180 THR MODIFIED RESIDUE MODRES 6ZQS PTR A 182 TYR MODIFIED RESIDUE HET TPO A 180 11 HET PTR A 182 16 HET 3FF A 400 31 HETNAM TPO PHOSPHOTHREONINE HETNAM PTR O-PHOSPHOTYROSINE HETNAM 3FF 2-[(2,4-DIFLUOROPHENYL)AMINO]-7-{[(2R)-2,3- HETNAM 2 3FF DIHYDROXYPROPYL]OXY}-10,11-DIHYDRO-5H-DIBENZO[A, HETNAM 3 3FF D][7]ANNULEN-5-ONE HETSYN TPO PHOSPHONOTHREONINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 PTR C9 H12 N O6 P FORMUL 3 3FF C24 H21 F2 N O4 FORMUL 4 HOH *351(H2 O) HELIX 1 AA1 GLY A 31 ALA A 34 5 4 HELIX 2 AA2 SER A 61 MET A 78 1 18 HELIX 3 AA3 SER A 95 PHE A 99 5 5 HELIX 4 AA4 ASP A 112 LYS A 118 1 7 HELIX 5 AA5 THR A 123 ALA A 144 1 22 HELIX 6 AA6 LYS A 152 SER A 154 5 3 HELIX 7 AA7 THR A 185 ARG A 189 5 5 HELIX 8 AA8 ALA A 190 ASN A 196 1 7 HELIX 9 AA9 GLN A 202 GLY A 219 1 18 HELIX 10 AB1 ASP A 227 GLY A 240 1 14 HELIX 11 AB2 GLY A 243 LYS A 248 1 6 HELIX 12 AB3 SER A 252 SER A 261 1 10 HELIX 13 AB4 ASN A 269 VAL A 273 5 5 HELIX 14 AB5 ASN A 278 LEU A 289 1 12 HELIX 15 AB6 ASP A 292 ARG A 296 5 5 HELIX 16 AB7 THR A 298 ALA A 304 1 7 HELIX 17 AB8 HIS A 305 ALA A 309 5 5 HELIX 18 AB9 LEU A 333 SER A 347 1 15 HELIX 19 AC1 ASN B 90 GLU B 101 1 12 SHEET 1 AA1 2 PHE A 8 GLU A 12 0 SHEET 2 AA1 2 ILE A 17 PRO A 21 -1 O TRP A 18 N GLN A 11 SHEET 1 AA2 5 TYR A 24 PRO A 29 0 SHEET 2 AA2 5 VAL A 38 ASP A 43 -1 O ALA A 40 N SER A 28 SHEET 3 AA2 5 ARG A 49 LYS A 54 -1 O VAL A 52 N CYS A 39 SHEET 4 AA2 5 TYR A 103 HIS A 107 -1 O LEU A 104 N LYS A 53 SHEET 5 AA2 5 ASP A 88 PHE A 90 -1 N PHE A 90 O TYR A 103 SHEET 1 AA3 2 ILE A 146 ILE A 147 0 SHEET 2 AA3 2 ARG A 173 HIS A 174 -1 O ARG A 173 N ILE A 147 SHEET 1 AA4 2 LEU A 156 VAL A 158 0 SHEET 2 AA4 2 LEU A 164 ILE A 166 -1 O LYS A 165 N ALA A 157 LINK C MET A 179 N TPO A 180 1555 1555 1.33 LINK C TPO A 180 N GLY A 181 1555 1555 1.32 LINK C GLY A 181 N PTR A 182 1555 1555 1.33 LINK C PTR A 182 N VAL A 183 1555 1555 1.33 SITE 1 AC1 15 ASN A 26 SER A 28 VAL A 30 GLY A 31 SITE 2 AC1 15 VAL A 38 ALA A 51 LYS A 53 LEU A 86 SITE 3 AC1 15 LEU A 104 VAL A 105 THR A 106 MET A 109 SITE 4 AC1 15 GLY A 110 ALA A 111 HOH A 672 CRYST1 39.401 84.602 122.533 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025380 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008161 0.00000