data_6D3P # _entry.id 6D3P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6D3P pdb_00006d3p 10.2210/pdb6d3p/pdb WWPDB D_1000233949 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-06-20 2 'Structure model' 1 1 2018-07-04 3 'Structure model' 1 2 2019-12-04 4 'Structure model' 1 3 2020-10-21 5 'Structure model' 1 4 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Data collection' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 4 'Structure model' reflns_shell 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_pdbx_audit_support.country' 5 3 'Structure model' '_pdbx_audit_support.funding_organization' 6 4 'Structure model' '_reflns_shell.Rmerge_I_obs' 7 4 'Structure model' '_reflns_shell.pdbx_Rrim_I_all' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6D3P _pdbx_database_status.recvd_initial_deposition_date 2018-04-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Steckelberg, A.-L.' 1 0000-0001-7988-9946 'Akiyama, B.M.' 2 ? 'Costantino, D.A.' 3 ? 'Sit, T.L.' 4 ? 'Nix, J.C.' 5 ? 'Kieft, J.S.' 6 0000-0002-3718-1891 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Proc. Natl. Acad. Sci. U.S.A.' _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 115 _citation.language ? _citation.page_first 6404 _citation.page_last 6409 _citation.title 'A folded viral noncoding RNA blocks host cell exoribonucleases through a conformationally dynamic RNA structure.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1802429115 _citation.pdbx_database_id_PubMed 29866852 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Steckelberg, A.L.' 1 ? primary 'Akiyama, B.M.' 2 ? primary 'Costantino, D.A.' 3 ? primary 'Sit, T.L.' 4 ? primary 'Nix, J.C.' 5 ? primary 'Kieft, J.S.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (45-MER)' 14543.732 1 ? ? ? ? 2 non-polymer syn 'IRIDIUM HEXAMMINE ION' 294.400 10 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGCGUAACCUCCAUCCGAGUUGCAAGAGAGGGAAACGCAGUCUC _entity_poly.pdbx_seq_one_letter_code_can GGGCGUAACCUCCAUCCGAGUUGCAAGAGAGGGAAACGCAGUCUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'IRIDIUM HEXAMMINE ION' _pdbx_entity_nonpoly.comp_id IRI # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 A n 1 8 A n 1 9 C n 1 10 C n 1 11 U n 1 12 C n 1 13 C n 1 14 A n 1 15 U n 1 16 C n 1 17 C n 1 18 G n 1 19 A n 1 20 G n 1 21 U n 1 22 U n 1 23 G n 1 24 C n 1 25 A n 1 26 A n 1 27 G n 1 28 A n 1 29 G n 1 30 A n 1 31 G n 1 32 G n 1 33 G n 1 34 A n 1 35 A n 1 36 A n 1 37 C n 1 38 G n 1 39 C n 1 40 A n 1 41 G n 1 42 U n 1 43 C n 1 44 U n 1 45 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Sweet clover necrotic mosaic virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 28348 _pdbx_entity_src_syn.details 'In vitro transcribed with T7 RNA polymerase' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 IRI non-polymer . 'IRIDIUM HEXAMMINE ION' ? 'H18 Ir N6 3' 294.400 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 C 10 10 10 C C A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 U 15 15 15 U U A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n A 1 18 G 18 18 18 G G A . n A 1 19 A 19 19 19 A A A . n A 1 20 G 20 20 20 G G A . n A 1 21 U 21 21 21 U U A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 C 24 24 24 C C A . n A 1 25 A 25 25 25 A A A . n A 1 26 A 26 26 26 A A A . n A 1 27 G 27 27 27 G G A . n A 1 28 A 28 28 28 A A A . n A 1 29 G 29 29 29 G G A . n A 1 30 A 30 30 30 A A A . n A 1 31 G 31 31 31 G G A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 A 34 34 34 A A A . n A 1 35 A 35 35 35 A A A . n A 1 36 A 36 36 36 A A A . n A 1 37 C 37 37 37 C C A . n A 1 38 G 38 38 38 G G A . n A 1 39 C 39 39 39 C C A . n A 1 40 A 40 40 40 A A A . n A 1 41 G 41 41 41 G G A . n A 1 42 U 42 42 42 U U A . n A 1 43 C 43 43 43 C C A . n A 1 44 U 44 44 44 U U A . n A 1 45 C 45 45 45 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IRI 1 101 1 IRI IRI A . C 2 IRI 1 102 2 IRI IRI A . D 2 IRI 1 103 3 IRI IRI A . E 2 IRI 1 104 4 IRI IRI A . F 2 IRI 1 105 5 IRI IRI A . G 2 IRI 1 106 6 IRI IRI A . H 2 IRI 1 107 7 IRI IRI A . I 2 IRI 1 108 8 IRI IRI A . J 2 IRI 1 109 9 IRI IRI A . K 2 IRI 1 110 10 IRI IRI A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6D3P _cell.details ? _cell.formula_units_Z ? _cell.length_a 83.400 _cell.length_a_esd ? _cell.length_b 83.400 _cell.length_b_esd ? _cell.length_c 94.210 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6D3P _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.25 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;drop: 1 uL 5 mg/mL RNA in 30 mM HEPES pH 7.5, 20 mM MgCl2, 100 mM KCl + 1 uL 50 mM sodium cacodylate trihydrate (pH 6.5), 0.2 M potassium chloride, 0.1 M magnesium acetate tetrahydrate, 14% w/v PEG 8000. Crystals were buffer-exchanged into freezing solution (mother liquor containing 20% ethylene glycol and 20 mM Iridium (III) hexammine) and flash-frozen in liquid nitrogen ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CMOS _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RDI CMOS_8M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-11-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0972 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0972 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 94.260 _reflns.entry_id 6D3P _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 39.455 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 27657 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 88.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 25.782 _reflns.pdbx_Rmerge_I_obs 0.592 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.140 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.754 _reflns.pdbx_scaling_rejects 1073 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.612 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 713044 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.884 _reflns.pdbx_R_split ? _reflns.pdbx_CC_star ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split _reflns_shell.pdbx_CC_star 1.850 1.900 ? ? ? 919 2288 ? 542 23.700 ? ? ? ? ? ? ? ? ? ? ? ? ? 1.696 ? ? ? ? ? ? ? 1 1 ? ? ? 1.900 1.950 ? 0.150 ? 3357 2236 ? 1305 58.400 ? ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? ? ? ? ? ? ? 2 1 ? ? ? 1.950 2.010 ? ? ? 6910 2192 ? 1771 80.800 ? ? ? ? ? ? ? ? ? ? ? ? ? 3.902 ? ? ? ? ? ? ? 3 1 ? ? ? 2.010 2.070 ? ? ? 9720 2126 ? 1921 90.400 ? ? ? ? ? ? ? ? ? ? ? ? ? 5.060 ? ? ? ? ? ? ? 4 1 ? ? ? 2.070 2.140 ? ? ? 12270 2074 ? 1933 93.200 ? ? ? ? ? ? ? ? ? ? ? ? ? 6.348 ? ? ? ? ? ? ? 5 1 ? ? ? 2.140 2.210 ? ? ? 18047 1981 ? 1918 96.800 ? ? ? ? ? ? ? ? ? ? ? ? ? 9.409 ? ? ? ? ? ? ? 6 1 ? ? ? 2.210 2.300 ? ? ? 26187 1925 ? 1903 98.900 ? ? ? ? ? ? ? ? ? ? ? ? ? 13.761 ? ? ? ? ? ? ? 7 1 ? ? ? 2.300 2.390 ? ? ? 37475 1857 ? 1855 99.900 ? ? ? ? ? ? ? ? ? ? ? ? ? 20.202 ? ? ? ? ? ? ? 8 1 ? ? ? 2.390 2.500 ? ? ? 48139 1772 ? 1770 99.900 ? ? ? ? ? ? ? ? ? ? ? ? ? 27.197 ? ? ? ? ? ? ? 9 1 ? ? ? 2.500 2.620 ? ? ? 63696 1705 ? 1696 99.500 ? ? ? ? ? ? ? ? ? ? ? ? ? 37.557 ? ? ? ? ? ? ? 10 1 0.147 ? ? 2.620 2.760 ? ? ? 66513 1601 ? 1598 99.800 ? ? ? ? ? ? ? ? ? ? ? ? ? 41.623 ? ? ? ? ? ? ? 11 1 0.338 ? ? 2.760 2.930 ? 0.670 ? 63337 1530 ? 1524 99.600 ? ? ? ? ? ? ? ? ? ? ? ? ? 41.560 ? ? ? ? ? ? ? 12 1 0.708 ? ? 2.930 3.130 ? 1.670 ? 58934 1438 ? 1435 99.800 ? ? ? ? 4.080 ? ? ? ? ? ? ? ? 41.069 ? ? ? ? 4.131 ? ? 13 1 0.825 ? ? 3.130 3.380 ? 4.420 ? 57617 1338 ? 1338 100.000 ? ? ? ? 1.512 ? ? ? ? ? ? ? ? 43.062 ? ? ? ? 1.530 ? ? 14 1 0.971 ? ? 3.380 3.700 ? 10.870 ? 57007 1223 ? 1223 100.000 ? ? ? ? 0.575 ? ? ? ? ? ? ? ? 46.612 ? ? ? ? 0.581 ? ? 15 1 0.996 ? ? 3.700 4.140 ? 20.760 ? 52077 1109 ? 1109 100.000 ? ? ? ? 0.291 ? ? ? ? ? ? ? ? 46.959 ? ? ? ? 0.294 ? ? 16 1 0.998 ? ? 4.140 4.780 ? 32.850 ? 46315 985 ? 985 100.000 ? ? ? ? 0.146 ? ? ? ? ? ? ? ? 47.020 ? ? ? ? 0.148 ? ? 17 1 1.000 ? ? 4.780 5.860 ? 53.650 ? 38736 826 ? 826 100.000 ? ? ? ? 0.083 ? ? ? ? ? ? ? ? 46.896 ? ? ? ? 0.084 ? ? 18 1 1.000 ? ? 5.860 8.280 ? 71.840 ? 30199 648 ? 648 100.000 ? ? ? ? 0.062 ? ? ? ? ? ? ? ? 46.603 ? ? ? ? 0.063 ? ? 19 1 1.000 ? ? 8.280 39.455 ? 81.550 ? 15589 363 ? 357 98.300 ? ? ? ? 0.054 ? ? ? ? ? ? ? ? 43.667 ? ? ? ? 0.054 ? ? 20 1 1.000 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 280.900 _refine.B_iso_mean 95.3912 _refine.B_iso_min 52.700 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6D3P _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9000 _refine.ls_d_res_low 39.4550 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8106 _refine.ls_number_reflns_R_free 816 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.5800 _refine.ls_percent_reflns_R_free 10.0700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2434 _refine.ls_R_factor_R_free 0.2587 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2415 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 33.0900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4800 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.9000 _refine_hist.d_res_low 39.4550 _refine_hist.pdbx_number_atoms_ligand 70 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1036 _refine_hist.pdbx_number_residues_total 45 _refine_hist.pdbx_B_iso_mean_ligand 130.39 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 966 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.9002 3.0819 1360 . 132 1228 100.0000 . . . 0.4181 0.0000 0.3768 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 3.0819 3.3197 1339 . 140 1199 99.0000 . . . 0.3116 0.0000 0.3098 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 3.3197 3.6536 1347 . 138 1209 100.0000 . . . 0.3550 0.0000 0.2801 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 3.6536 4.1817 1351 . 134 1217 99.0000 . . . 0.2777 0.0000 0.2424 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 4.1817 5.2666 1354 . 138 1216 100.0000 . . . 0.2526 0.0000 0.2349 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 5.2666 39.4591 1355 . 134 1221 100.0000 . . . 0.2036 0.0000 0.2065 . . . . . . 6 . . . # _struct.entry_id 6D3P _struct.title 'Crystal structure of an exoribonuclease-resistant RNA from Sweet clover necrotic mosaic virus (SCNMV)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6D3P _struct_keywords.text 'RNA maturation, exoribonuclease resistance, viral non-coding RNA, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6D3P _struct_ref.pdbx_db_accession 6D3P _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6D3P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 45 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6D3P _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 45 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 45 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 8490 ? 2 MORE -55 ? 2 'SSA (A^2)' 15520 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_566 x,x-y+1,-z+7/6 0.5000000000 0.8660254038 0.0000000000 -41.7000000000 0.8660254038 -0.5000000000 0.0000000000 72.2265186756 0.0000000000 0.0000000000 -1.0000000000 109.9116666667 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 3 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 3 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 3 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 4 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 4 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 4 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 5 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 5 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 5 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 36 N1 ? ? A U 6 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 36 N6 ? ? A U 6 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 7 N1 ? ? ? 1_555 A G 23 N2 ? ? A A 7 A G 23 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog13 hydrog ? ? A A 7 N6 ? ? ? 1_555 A G 23 N3 ? ? A A 7 A G 23 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog14 hydrog ? ? A A 8 N6 ? ? ? 1_555 A G 33 N3 ? ? A A 8 A G 33 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog15 hydrog ? ? A A 8 N7 ? ? ? 1_555 A G 33 N2 ? ? A A 8 A G 33 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog16 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 9 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 9 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 9 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 10 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 10 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 10 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 30 N1 ? ? A U 11 A A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 30 N6 ? ? A U 11 A A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 12 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 12 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 12 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 13 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 13 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 13 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 28 N1 ? ? A U 21 A A 28 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog31 hydrog ? ? A U 21 O2 ? ? ? 1_555 A A 28 N6 ? ? A U 21 A A 28 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog32 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 26 N7 ? ? A U 22 A A 26 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog33 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 26 N6 ? ? A U 22 A A 26 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IRI 101 ? 3 'binding site for residue IRI A 101' AC2 Software A IRI 102 ? 3 'binding site for residue IRI A 102' AC3 Software A IRI 103 ? 4 'binding site for residue IRI A 103' AC4 Software A IRI 104 ? 7 'binding site for residue IRI A 104' AC5 Software A IRI 105 ? 4 'binding site for residue IRI A 105' AC6 Software A IRI 106 ? 3 'binding site for residue IRI A 106' AC7 Software A IRI 107 ? 4 'binding site for residue IRI A 107' AC8 Software A IRI 108 ? 3 'binding site for residue IRI A 108' AC9 Software A IRI 109 ? 4 'binding site for residue IRI A 109' AD1 Software A IRI 110 ? 3 'binding site for residue IRI A 110' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 U A 22 ? U A 22 . ? 1_555 ? 2 AC1 3 G A 23 ? G A 23 . ? 1_555 ? 3 AC1 3 A A 25 ? A A 25 . ? 1_555 ? 4 AC2 3 G A 1 ? G A 1 . ? 1_555 ? 5 AC2 3 G A 2 ? G A 2 . ? 1_555 ? 6 AC2 3 G A 3 ? G A 3 . ? 1_555 ? 7 AC3 4 C A 4 ? C A 4 . ? 1_555 ? 8 AC3 4 G A 5 ? G A 5 . ? 1_555 ? 9 AC3 4 G A 32 ? G A 32 . ? 1_555 ? 10 AC3 4 G A 33 ? G A 33 . ? 1_555 ? 11 AC4 7 U A 6 ? U A 6 . ? 1_555 ? 12 AC4 7 A A 28 ? A A 28 . ? 1_555 ? 13 AC4 7 G A 29 ? G A 29 . ? 1_555 ? 14 AC4 7 A A 30 ? A A 30 . ? 1_555 ? 15 AC4 7 U A 42 ? U A 42 . ? 12_566 ? 16 AC4 7 C A 43 ? C A 43 . ? 12_566 ? 17 AC4 7 IRI H . ? IRI A 107 . ? 1_555 ? 18 AC5 4 C A 17 ? C A 17 . ? 6_555 ? 19 AC5 4 G A 23 ? G A 23 . ? 1_555 ? 20 AC5 4 C A 24 ? C A 24 . ? 1_555 ? 21 AC5 4 IRI J . ? IRI A 109 . ? 6_555 ? 22 AC6 3 G A 20 ? G A 20 . ? 1_555 ? 23 AC6 3 U A 21 ? U A 21 . ? 1_555 ? 24 AC6 3 A A 26 ? A A 26 . ? 1_555 ? 25 AC7 4 G A 31 ? G A 31 . ? 1_555 ? 26 AC7 4 G A 32 ? G A 32 . ? 1_555 ? 27 AC7 4 G A 33 ? G A 33 . ? 1_555 ? 28 AC7 4 IRI E . ? IRI A 104 . ? 1_555 ? 29 AC8 3 G A 1 ? G A 1 . ? 8_666 ? 30 AC8 3 C A 17 ? C A 17 . ? 1_555 ? 31 AC8 3 G A 18 ? G A 18 . ? 1_555 ? 32 AC9 4 U A 15 ? U A 15 . ? 1_555 ? 33 AC9 4 C A 17 ? C A 17 . ? 1_555 ? 34 AC9 4 C A 24 ? C A 24 . ? 5_554 ? 35 AC9 4 IRI F . ? IRI A 105 . ? 5_554 ? 36 AD1 3 U A 15 ? U A 15 . ? 6_555 ? 37 AD1 3 A A 40 ? A A 40 . ? 12_566 ? 38 AD1 3 G A 41 ? G A 41 . ? 12_566 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 IRI IR IR N N 111 IRI N1 N N N 112 IRI N2 N N N 113 IRI N3 N N N 114 IRI N4 N N N 115 IRI N5 N N N 116 IRI N6 N N N 117 IRI HN11 H N N 118 IRI HN12 H N N 119 IRI HN13 H N N 120 IRI HN21 H N N 121 IRI HN22 H N N 122 IRI HN23 H N N 123 IRI HN31 H N N 124 IRI HN32 H N N 125 IRI HN33 H N N 126 IRI HN41 H N N 127 IRI HN42 H N N 128 IRI HN43 H N N 129 IRI HN51 H N N 130 IRI HN52 H N N 131 IRI HN53 H N N 132 IRI HN61 H N N 133 IRI HN62 H N N 134 IRI HN63 H N N 135 U OP3 O N N 136 U P P N N 137 U OP1 O N N 138 U OP2 O N N 139 U "O5'" O N N 140 U "C5'" C N N 141 U "C4'" C N R 142 U "O4'" O N N 143 U "C3'" C N S 144 U "O3'" O N N 145 U "C2'" C N R 146 U "O2'" O N N 147 U "C1'" C N R 148 U N1 N N N 149 U C2 C N N 150 U O2 O N N 151 U N3 N N N 152 U C4 C N N 153 U O4 O N N 154 U C5 C N N 155 U C6 C N N 156 U HOP3 H N N 157 U HOP2 H N N 158 U "H5'" H N N 159 U "H5''" H N N 160 U "H4'" H N N 161 U "H3'" H N N 162 U "HO3'" H N N 163 U "H2'" H N N 164 U "HO2'" H N N 165 U "H1'" H N N 166 U H3 H N N 167 U H5 H N N 168 U H6 H N N 169 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 IRI IR N1 sing N N 116 IRI IR N2 sing N N 117 IRI IR N3 sing N N 118 IRI IR N4 sing N N 119 IRI IR N5 sing N N 120 IRI IR N6 sing N N 121 IRI N1 HN11 sing N N 122 IRI N1 HN12 sing N N 123 IRI N1 HN13 sing N N 124 IRI N2 HN21 sing N N 125 IRI N2 HN22 sing N N 126 IRI N2 HN23 sing N N 127 IRI N3 HN31 sing N N 128 IRI N3 HN32 sing N N 129 IRI N3 HN33 sing N N 130 IRI N4 HN41 sing N N 131 IRI N4 HN42 sing N N 132 IRI N4 HN43 sing N N 133 IRI N5 HN51 sing N N 134 IRI N5 HN52 sing N N 135 IRI N5 HN53 sing N N 136 IRI N6 HN61 sing N N 137 IRI N6 HN62 sing N N 138 IRI N6 HN63 sing N N 139 U OP3 P sing N N 140 U OP3 HOP3 sing N N 141 U P OP1 doub N N 142 U P OP2 sing N N 143 U P "O5'" sing N N 144 U OP2 HOP2 sing N N 145 U "O5'" "C5'" sing N N 146 U "C5'" "C4'" sing N N 147 U "C5'" "H5'" sing N N 148 U "C5'" "H5''" sing N N 149 U "C4'" "O4'" sing N N 150 U "C4'" "C3'" sing N N 151 U "C4'" "H4'" sing N N 152 U "O4'" "C1'" sing N N 153 U "C3'" "O3'" sing N N 154 U "C3'" "C2'" sing N N 155 U "C3'" "H3'" sing N N 156 U "O3'" "HO3'" sing N N 157 U "C2'" "O2'" sing N N 158 U "C2'" "C1'" sing N N 159 U "C2'" "H2'" sing N N 160 U "O2'" "HO2'" sing N N 161 U "C1'" N1 sing N N 162 U "C1'" "H1'" sing N N 163 U N1 C2 sing N N 164 U N1 C6 sing N N 165 U C2 O2 doub N N 166 U C2 N3 sing N N 167 U N3 C4 sing N N 168 U N3 H3 sing N N 169 U C4 O4 doub N N 170 U C4 C5 sing N N 171 U C5 C6 doub N N 172 U C5 H5 sing N N 173 U C6 H6 sing N N 174 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6D3P 'double helix' 6D3P 'a-form double helix' 6D3P 'hairpin loop' 6D3P 'mismatched base pair' 6D3P 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 A C 39 1_555 -0.095 -0.046 0.206 -1.767 -2.884 0.398 1 A_G3:C39_A A 3 ? A 39 ? 19 1 1 A C 4 1_555 A G 38 1_555 0.253 -0.066 -0.032 2.477 -16.574 -2.166 2 A_C4:G38_A A 4 ? A 38 ? 19 1 1 A G 5 1_555 A C 37 1_555 -0.275 0.086 -0.119 -4.935 -9.351 1.506 3 A_G5:C37_A A 5 ? A 37 ? 19 1 1 A U 6 1_555 A A 36 1_555 0.278 -0.079 -0.016 19.062 12.263 -5.236 4 A_U6:A36_A A 6 ? A 36 ? 20 1 1 A U 21 1_555 A A 28 1_555 0.135 -0.839 -0.866 -18.672 0.839 -157.461 5 A_U21:A28_A A 21 ? A 28 ? 21 2 1 A U 22 1_555 A A 26 1_555 4.141 -2.361 0.281 -2.008 14.018 -91.458 6 A_U22:A26_A A 22 ? A 26 ? 24 4 1 A G 23 1_555 A A 7 1_555 3.382 -3.772 0.981 9.563 2.059 -65.972 7 A_G23:A7_A A 23 ? A 7 ? 10 6 1 A A 8 1_555 A G 33 1_555 -7.071 -4.019 0.429 8.215 2.381 -9.291 8 A_A8:G33_A A 8 ? A 33 ? 11 10 1 A C 9 1_555 A G 32 1_555 -0.114 0.147 -0.467 14.408 -10.299 3.881 9 A_C9:G32_A A 9 ? A 32 ? 19 1 1 A C 10 1_555 A G 31 1_555 -0.013 0.003 -0.182 0.528 -1.842 0.156 10 A_C10:G31_A A 10 ? A 31 ? 19 1 1 A U 11 1_555 A A 30 1_555 -0.168 -0.037 -0.177 4.279 -1.198 -1.249 11 A_U11:A30_A A 11 ? A 30 ? 20 1 1 A C 12 1_555 A G 29 1_555 0.370 0.016 -0.359 8.901 -6.298 1.870 12 A_C12:G29_A A 12 ? A 29 ? 19 1 1 A C 13 1_555 A G 27 1_555 0.083 0.169 -0.050 6.285 -7.882 -2.749 13 A_C13:G27_A A 13 ? A 27 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 A C 39 1_555 A C 4 1_555 A G 38 1_555 -0.037 -1.468 3.121 1.130 9.442 36.487 -3.376 0.190 2.670 14.773 -1.768 37.665 1 AA_G3C4:G38C39_AA A 3 ? A 39 ? A 4 ? A 38 ? 1 A C 4 1_555 A G 38 1_555 A G 5 1_555 A C 37 1_555 -0.363 -1.896 3.201 0.244 13.273 26.500 -6.094 0.756 2.036 26.912 -0.495 29.586 2 AA_C4G5:C37G38_AA A 4 ? A 38 ? A 5 ? A 37 ? 1 A G 5 1_555 A C 37 1_555 A U 6 1_555 A A 36 1_555 -0.382 -1.032 2.997 0.161 14.787 26.490 -4.485 0.759 2.133 29.526 -0.322 30.273 3 AA_G5U6:A36C37_AA A 5 ? A 37 ? A 6 ? A 36 ? 1 A U 21 1_555 A A 28 1_555 A U 22 1_555 A A 26 1_555 -2.964 0.296 3.524 11.674 10.712 -2.633 -13.484 2.929 2.537 -54.507 59.406 -16.060 4 AA_U21U22:A26A28_AA A 21 ? A 28 ? A 22 ? A 26 ? 1 A U 22 1_555 A A 26 1_555 A G 23 1_555 A A 7 1_555 0.625 -1.792 3.102 11.931 10.986 25.322 -5.470 0.973 2.226 22.371 -24.297 29.999 5 AA_U22G23:A7A26_AA A 22 ? A 26 ? A 23 ? A 7 ? 1 A A 8 1_555 A G 33 1_555 A C 9 1_555 A G 32 1_555 0.871 -0.700 3.114 4.150 4.549 63.515 -0.851 -0.653 3.108 4.310 -3.933 63.781 6 AA_A8C9:G32G33_AA A 8 ? A 33 ? A 9 ? A 32 ? 1 A C 9 1_555 A G 32 1_555 A C 10 1_555 A G 31 1_555 -0.728 -1.875 3.557 -3.717 10.076 32.640 -4.786 0.641 2.929 17.352 6.402 34.316 7 AA_C9C10:G31G32_AA A 9 ? A 32 ? A 10 ? A 31 ? 1 A C 10 1_555 A G 31 1_555 A U 11 1_555 A A 30 1_555 -0.180 -1.546 3.122 0.306 6.955 29.246 -4.267 0.405 2.689 13.533 -0.596 30.045 8 AA_C10U11:A30G31_AA A 10 ? A 31 ? A 11 ? A 30 ? 1 A U 11 1_555 A A 30 1_555 A C 12 1_555 A G 29 1_555 0.720 -1.461 3.137 1.891 6.676 35.271 -3.250 -0.918 2.855 10.888 -3.084 35.926 9 AA_U11C12:G29A30_AA A 11 ? A 30 ? A 12 ? A 29 ? 1 A C 12 1_555 A G 29 1_555 A C 13 1_555 A G 27 1_555 -0.341 -1.988 3.460 -2.571 0.066 29.975 -3.845 0.099 3.472 0.128 4.960 30.082 10 AA_C12C13:G27G29_AA A 12 ? A 29 ? A 13 ? A 27 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM118070 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' R01AI133348 2 'European Molecular Biology Organization (EMBO)' 'European Union' 'ALTF 611-2015' 3 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' F32GM117730 4 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' P30CA046934 5 # _atom_sites.entry_id 6D3P _atom_sites.fract_transf_matrix[1][1] 0.011990 _atom_sites.fract_transf_matrix[1][2] 0.006923 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013845 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010615 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C IR N O P # loop_