data_6GLD # _entry.id 6GLD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6GLD pdb_00006gld 10.2210/pdb6gld/pdb WWPDB D_1200010183 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-06-19 2 'Structure model' 1 1 2019-07-31 3 'Structure model' 1 2 2019-08-28 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_source 2 2 'Structure model' pdbx_struct_assembly 3 2 'Structure model' pdbx_struct_assembly_gen 4 2 'Structure model' pdbx_struct_assembly_prop 5 2 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' citation 7 3 'Structure model' citation_author 8 4 'Structure model' chem_comp_atom 9 4 'Structure model' chem_comp_bond 10 4 'Structure model' database_2 11 4 'Structure model' pdbx_struct_conn_angle 12 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 2 'Structure model' '_pdbx_struct_assembly.oligomeric_count' 3 2 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 4 2 'Structure model' '_pdbx_struct_assembly_gen.oper_expression' 5 2 'Structure model' '_pdbx_struct_assembly_prop.value' 6 3 'Structure model' '_citation.country' 7 3 'Structure model' '_citation.journal_abbrev' 8 3 'Structure model' '_citation.journal_id_CSD' 9 3 'Structure model' '_citation.journal_id_ISSN' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 3 'Structure model' '_citation.pdbx_database_id_DOI' 14 3 'Structure model' '_citation.pdbx_database_id_PubMed' 15 3 'Structure model' '_citation.title' 16 3 'Structure model' '_citation.year' 17 4 'Structure model' '_database_2.pdbx_DOI' 18 4 'Structure model' '_database_2.pdbx_database_accession' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.value' 22 4 'Structure model' '_struct_conn.pdbx_dist_value' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6GLD _pdbx_database_status.recvd_initial_deposition_date 2018-05-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'McQuaid, K.T.' 1 ? 'Hall, J.P.' 2 ? 'Cardin, C.J.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chemistry _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0947-6539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 24 _citation.language ? _citation.page_first 15859 _citation.page_last 15867 _citation.title 'X-ray Crystal Structures Show DNA Stacking Advantage of Terminal Nitrile Substitution in Ru-dppz Complexes.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/chem.201803021 _citation.pdbx_database_id_PubMed 30063271 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McQuaid, K.' 1 ? primary 'Hall, J.P.' 2 ? primary 'Brazier, J.A.' 3 ? primary 'Cardin, D.J.' 4 ? primary 'Cardin, C.J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'd(TCGGCGCCGA)2' 3045.992 1 ? ? ? ? 2 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 3 non-polymer syn 'Ruthenium (bis-(tetraazaphenanthrene)) (11-bromo-dipyridophenazine)' 826.628 1 ? ? ? ? 4 water nat water 18.015 84 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCGGCGCCGA _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BARIUM ION' BA 3 'Ruthenium (bis-(tetraazaphenanthrene)) (11-bromo-dipyridophenazine)' F3K 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 F3K non-polymer . 'Ruthenium (bis-(tetraazaphenanthrene)) (11-bromo-dipyridophenazine)' ? 'C38 H21 Br N12 Ru 6' 826.628 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT B . n A 1 2 DC 2 2 2 DC DC B . n A 1 3 DG 3 3 3 DG DG B . n A 1 4 DG 4 4 4 DG DG B . n A 1 5 DC 5 5 5 DC DC B . n A 1 6 DG 6 6 6 DG DG B . n A 1 7 DC 7 7 7 DC DC B . n A 1 8 DC 8 8 8 DC DC B . n A 1 9 DG 9 9 9 DG DG B . n A 1 10 DA 10 10 10 DA DA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BA 1 101 102 BA BA B . C 3 F3K 1 102 1 F3K FAP B . D 4 HOH 1 201 87 HOH HOH B . D 4 HOH 2 202 26 HOH HOH B . D 4 HOH 3 203 29 HOH HOH B . D 4 HOH 4 204 89 HOH HOH B . D 4 HOH 5 205 83 HOH HOH B . D 4 HOH 6 206 31 HOH HOH B . D 4 HOH 7 207 20 HOH HOH B . D 4 HOH 8 208 46 HOH HOH B . D 4 HOH 9 209 22 HOH HOH B . D 4 HOH 10 210 60 HOH HOH B . D 4 HOH 11 211 32 HOH HOH B . D 4 HOH 12 212 28 HOH HOH B . D 4 HOH 13 213 53 HOH HOH B . D 4 HOH 14 214 81 HOH HOH B . D 4 HOH 15 215 52 HOH HOH B . D 4 HOH 16 216 30 HOH HOH B . D 4 HOH 17 217 21 HOH HOH B . D 4 HOH 18 218 19 HOH HOH B . D 4 HOH 19 219 18 HOH HOH B . D 4 HOH 20 220 42 HOH HOH B . D 4 HOH 21 221 90 HOH HOH B . D 4 HOH 22 222 2 HOH HOH B . D 4 HOH 23 223 4 HOH HOH B . D 4 HOH 24 224 38 HOH HOH B . D 4 HOH 25 225 41 HOH HOH B . D 4 HOH 26 226 134 HOH HOH B . D 4 HOH 27 227 102 HOH HOH B . D 4 HOH 28 228 27 HOH HOH B . D 4 HOH 29 229 40 HOH HOH B . D 4 HOH 30 230 69 HOH HOH B . D 4 HOH 31 231 84 HOH HOH B . D 4 HOH 32 232 16 HOH HOH B . D 4 HOH 33 233 35 HOH HOH B . D 4 HOH 34 234 17 HOH HOH B . D 4 HOH 35 235 10 HOH HOH B . D 4 HOH 36 236 74 HOH HOH B . D 4 HOH 37 237 24 HOH HOH B . D 4 HOH 38 238 55 HOH HOH B . D 4 HOH 39 239 3 HOH HOH B . D 4 HOH 40 240 1 HOH HOH B . D 4 HOH 41 241 82 HOH HOH B . D 4 HOH 42 242 5 HOH HOH B . D 4 HOH 43 243 7 HOH HOH B . D 4 HOH 44 244 6 HOH HOH B . D 4 HOH 45 245 8 HOH HOH B . D 4 HOH 46 246 15 HOH HOH B . D 4 HOH 47 247 59 HOH HOH B . D 4 HOH 48 248 12 HOH HOH B . D 4 HOH 49 249 14 HOH HOH B . D 4 HOH 50 250 45 HOH HOH B . D 4 HOH 51 251 36 HOH HOH B . D 4 HOH 52 252 47 HOH HOH B . D 4 HOH 53 253 92 HOH HOH B . D 4 HOH 54 254 128 HOH HOH B . D 4 HOH 55 255 11 HOH HOH B . D 4 HOH 56 256 96 HOH HOH B . D 4 HOH 57 257 33 HOH HOH B . D 4 HOH 58 258 25 HOH HOH B . D 4 HOH 59 259 75 HOH HOH B . D 4 HOH 60 260 37 HOH HOH B . D 4 HOH 61 261 101 HOH HOH B . D 4 HOH 62 262 136 HOH HOH B . D 4 HOH 63 263 9 HOH HOH B . D 4 HOH 64 264 77 HOH HOH B . D 4 HOH 65 265 155 HOH HOH B . D 4 HOH 66 266 34 HOH HOH B . D 4 HOH 67 267 104 HOH HOH B . D 4 HOH 68 268 85 HOH HOH B . D 4 HOH 69 269 58 HOH HOH B . D 4 HOH 70 270 73 HOH HOH B . D 4 HOH 71 271 131 HOH HOH B . D 4 HOH 72 272 23 HOH HOH B . D 4 HOH 73 273 61 HOH HOH B . D 4 HOH 74 274 66 HOH HOH B . D 4 HOH 75 275 78 HOH HOH B . D 4 HOH 76 276 62 HOH HOH B . D 4 HOH 77 277 161 HOH HOH B . D 4 HOH 78 278 86 HOH HOH B . D 4 HOH 79 279 57 HOH HOH B . D 4 HOH 80 280 158 HOH HOH B . D 4 HOH 81 281 135 HOH HOH B . D 4 HOH 82 282 148 HOH HOH B . D 4 HOH 83 283 68 HOH HOH B . D 4 HOH 84 284 117 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXCD ? ? ? . 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6GLD _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.136 _cell.length_a_esd ? _cell.length_b 42.136 _cell.length_b_esd ? _cell.length_c 39.092 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GLD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GLD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;125 uM d(TCGGCGCCGA)2, 750 uM rac-[Ru(TAP)2(11-CN-dppz)]Cl2, 7.5% v/v MPD, 30 mM pH 7 sodium cacodylate, 9 mM spermine tetrahydrochloride, 60 mM KCl and 15 mM BaCl2, all equilibrated against 500 uL of 35% v/v MPD. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-02-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9763 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6GLD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.06 _reflns.d_resolution_low 39.12 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16081 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 0.066 _reflns.observed_criterion_sigma_I 1.000 _reflns.percent_possible_obs 97.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20.9 _reflns.pdbx_Rmerge_I_obs 0.151 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.155 _reflns.pdbx_Rpim_I_all 0.032 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.06 _reflns_shell.d_res_low 2.88 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 596 _reflns_shell.percent_possible_all 74.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.847 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.897 _reflns_shell.pdbx_Rpim_I_all 0.282 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.457 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6GLD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.061 _refine.ls_d_res_low 29.795 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 29454 _refine.ls_number_reflns_R_free 1622 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.66 _refine.ls_percent_reflns_R_free 5.51 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1499 _refine.ls_R_factor_R_free 0.1584 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1493 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details 'Random Selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.01 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.11 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 339 _refine_hist.d_res_high 1.061 _refine_hist.d_res_low 29.795 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 356 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.407 ? 569 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 27.635 ? 106 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.071 ? 39 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.012 ? 16 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.0606 1.0918 . . 83 1750 73.00 . . . 0.3426 . 0.3568 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0918 1.1271 . . 107 2128 88.00 . . . 0.3147 . 0.3129 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1271 1.1673 . . 117 2416 99.00 . . . 0.2330 . 0.2418 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1673 1.2141 . . 155 2373 100.00 . . . 0.2200 . 0.2222 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2141 1.2693 . . 174 2376 100.00 . . . 0.1879 . 0.1941 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2693 1.3363 . . 128 2398 100.00 . . . 0.2117 . 0.1709 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3363 1.4200 . . 128 2424 100.00 . . . 0.1757 . 0.1586 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4200 1.5296 . . 154 2371 100.00 . . . 0.1150 . 0.1455 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5296 1.6835 . . 133 2411 100.00 . . . 0.1560 . 0.1364 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6835 1.9271 . . 181 2373 100.00 . . . 0.1555 . 0.1360 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9271 2.4278 . . 142 2379 100.00 . . . 0.1442 . 0.1310 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4278 29.8065 . . 120 2433 100.00 . . . 0.1407 . 0.1228 . . . . . . . . . . # _struct.entry_id 6GLD _struct.title 'Intercalation of [Ru(TAP)2(11-Br-dppz)]2+ bound to d(TCGGCGCCGA)2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GLD _struct_keywords.text 'Ruthenium, intercalation, DNA, asymmetric' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6GLD _struct_ref.pdbx_db_accession 6GLD _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6GLD _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6GLD _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1680 ? 1 MORE -21 ? 1 'SSA (A^2)' 4620 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 B BA . BA ? ? B DG 4 B BA 101 1_555 ? ? ? ? ? ? ? 2.855 ? ? metalc2 metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O ? ? B BA 101 B HOH 214 1_555 ? ? ? ? ? ? ? 2.773 ? ? metalc3 metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O ? ? B BA 101 B HOH 222 1_555 ? ? ? ? ? ? ? 2.844 ? ? metalc4 metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O ? ? B BA 101 B HOH 223 1_555 ? ? ? ? ? ? ? 2.834 ? ? metalc5 metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O ? ? B BA 101 B HOH 231 1_555 ? ? ? ? ? ? ? 2.782 ? ? metalc6 metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O ? ? B BA 101 B HOH 241 1_555 ? ? ? ? ? ? ? 2.769 ? ? metalc7 metalc ? ? B BA . BA ? ? ? 1_555 D HOH . O ? ? B BA 101 B HOH 268 1_555 ? ? ? ? ? ? ? 2.756 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? B DC 2 B DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? B DC 2 B DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? B DC 2 B DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? B DG 3 B DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? B DG 3 B DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? B DG 3 B DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? B DG 4 B DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? B DG 4 B DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? B DG 4 B DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 6 N1 ? ? B DC 5 B DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 6 O6 ? ? B DC 5 B DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 6 N2 ? ? B DC 5 B DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 5 N3 ? ? B DG 6 B DC 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 5 O2 ? ? B DG 6 B DC 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 5 N4 ? ? B DG 6 B DC 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? B DC 7 B DG 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? B DC 7 B DG 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? B DC 7 B DG 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? B DC 8 B DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? B DC 8 B DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? B DC 8 B DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? B DG 9 B DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? B DG 9 B DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? B DG 9 B DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? B DG 4 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 214 ? 1_555 69.5 ? 2 O6 ? A DG 4 ? B DG 4 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 222 ? 1_555 127.1 ? 3 O ? D HOH . ? B HOH 214 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 222 ? 1_555 140.0 ? 4 O6 ? A DG 4 ? B DG 4 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 223 ? 1_555 138.6 ? 5 O ? D HOH . ? B HOH 214 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 223 ? 1_555 77.5 ? 6 O ? D HOH . ? B HOH 222 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 223 ? 1_555 68.0 ? 7 O6 ? A DG 4 ? B DG 4 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 231 ? 1_555 64.3 ? 8 O ? D HOH . ? B HOH 214 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 231 ? 1_555 83.0 ? 9 O ? D HOH . ? B HOH 222 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 231 ? 1_555 136.3 ? 10 O ? D HOH . ? B HOH 223 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 231 ? 1_555 136.0 ? 11 O6 ? A DG 4 ? B DG 4 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 241 ? 1_555 107.0 ? 12 O ? D HOH . ? B HOH 214 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 241 ? 1_555 149.1 ? 13 O ? D HOH . ? B HOH 222 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 241 ? 1_555 67.6 ? 14 O ? D HOH . ? B HOH 223 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 241 ? 1_555 114.1 ? 15 O ? D HOH . ? B HOH 231 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 241 ? 1_555 68.8 ? 16 O6 ? A DG 4 ? B DG 4 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 268 ? 1_555 123.0 ? 17 O ? D HOH . ? B HOH 214 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 268 ? 1_555 77.2 ? 18 O ? D HOH . ? B HOH 222 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 268 ? 1_555 108.2 ? 19 O ? D HOH . ? B HOH 223 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 268 ? 1_555 70.5 ? 20 O ? D HOH . ? B HOH 231 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 268 ? 1_555 66.9 ? 21 O ? D HOH . ? B HOH 241 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O ? D HOH . ? B HOH 268 ? 1_555 80.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B BA 101 ? 8 'binding site for residue BA B 101' AC2 Software B F3K 102 ? 12 'binding site for residue F3K B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 3 ? DG B 3 . ? 1_555 ? 2 AC1 8 DG A 4 ? DG B 4 . ? 1_555 ? 3 AC1 8 HOH D . ? HOH B 214 . ? 1_555 ? 4 AC1 8 HOH D . ? HOH B 222 . ? 1_555 ? 5 AC1 8 HOH D . ? HOH B 223 . ? 1_555 ? 6 AC1 8 HOH D . ? HOH B 231 . ? 1_555 ? 7 AC1 8 HOH D . ? HOH B 241 . ? 1_555 ? 8 AC1 8 HOH D . ? HOH B 268 . ? 1_555 ? 9 AC2 12 DT A 1 ? DT B 1 . ? 1_555 ? 10 AC2 12 DC A 2 ? DC B 2 . ? 1_555 ? 11 AC2 12 DG A 3 ? DG B 3 . ? 4_555 ? 12 AC2 12 DG A 3 ? DG B 3 . ? 1_555 ? 13 AC2 12 DG A 4 ? DG B 4 . ? 4_555 ? 14 AC2 12 DC A 5 ? DC B 5 . ? 4_555 ? 15 AC2 12 DC A 7 ? DC B 7 . ? 6_555 ? 16 AC2 12 DC A 8 ? DC B 8 . ? 6_555 ? 17 AC2 12 DG A 9 ? DG B 9 . ? 7_555 ? 18 AC2 12 DA A 10 ? DA B 10 . ? 6_555 ? 19 AC2 12 HOH D . ? HOH B 244 . ? 1_555 ? 20 AC2 12 HOH D . ? HOH B 255 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DC _pdbx_validate_rmsd_bond.auth_seq_id_1 5 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 5 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.365 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.054 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 9 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 9 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 9 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.11 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 1.81 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 262 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 13.0655 _pdbx_refine_tls.origin_y 8.5684 _pdbx_refine_tls.origin_z 2.6009 _pdbx_refine_tls.T[1][1] 0.0841 _pdbx_refine_tls.T[2][2] 0.0792 _pdbx_refine_tls.T[3][3] 0.1511 _pdbx_refine_tls.T[1][2] -0.0046 _pdbx_refine_tls.T[1][3] -0.0053 _pdbx_refine_tls.T[2][3] -0.0007 _pdbx_refine_tls.L[1][1] 4.1617 _pdbx_refine_tls.L[2][2] 0.9856 _pdbx_refine_tls.L[3][3] 5.2116 _pdbx_refine_tls.L[1][2] -1.0129 _pdbx_refine_tls.L[1][3] 3.8061 _pdbx_refine_tls.L[2][3] -0.9671 _pdbx_refine_tls.S[1][1] -0.0602 _pdbx_refine_tls.S[1][2] -0.0907 _pdbx_refine_tls.S[1][3] 0.0248 _pdbx_refine_tls.S[2][1] -0.0599 _pdbx_refine_tls.S[2][2] 0.0277 _pdbx_refine_tls.S[2][3] 0.0833 _pdbx_refine_tls.S[3][1] -0.0559 _pdbx_refine_tls.S[3][2] -0.0963 _pdbx_refine_tls.S[3][3] 0.0448 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 270 ? 5.85 . 2 1 O ? B HOH 271 ? . 6.03 3 1 O ? B HOH 272 ? 6.04 . 4 1 O ? B HOH 273 ? 6.12 . 5 1 O ? B HOH 274 ? 6.20 . 6 1 O ? B HOH 275 ? . 6.31 7 1 O ? B HOH 276 ? 6.79 . 8 1 O ? B HOH 277 ? 7.27 . 9 1 O ? B HOH 278 ? . 7.46 10 1 O ? B HOH 279 ? . 7.51 11 1 O ? B HOH 280 ? 7.63 . 12 1 O ? B HOH 281 ? 8.47 . 13 1 O ? B HOH 282 ? 10.05 . 14 1 O ? B HOH 283 ? . 10.10 15 1 O ? B HOH 284 ? . 11.26 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 F3K C22 C Y N 145 F3K C17 C Y N 146 F3K C18 C Y N 147 F3K C19 C Y N 148 F3K C20 C Y N 149 F3K C21 C Y N 150 F3K C24 C Y N 151 F3K C11 C Y N 152 F3K C10 C Y N 153 F3K C12 C Y N 154 F3K C13 C Y N 155 F3K C25 C Y N 156 F3K C26 C Y N 157 F3K C28 C Y N 158 F3K C29 C Y N 159 F3K C01 C Y N 160 F3K C02 C Y N 161 F3K C03 C Y N 162 F3K C04 C Y N 163 F3K C05 C Y N 164 F3K C06 C Y N 165 F3K C07 C Y N 166 F3K C08 C Y N 167 F3K C09 C Y N 168 F3K C14 C Y N 169 F3K C15 C Y N 170 F3K C16 C Y N 171 F3K C23 C Y N 172 F3K C27 C Y N 173 F3K C30 C Y N 174 F3K C31 C Y N 175 F3K C32 C Y N 176 F3K C33 C Y N 177 F3K C34 C Y N 178 F3K C35 C Y N 179 F3K C36 C Y N 180 F3K C37 C Y N 181 F3K C38 C Y N 182 F3K N01 N Y N 183 F3K N02 N Y N 184 F3K N03 N Y N 185 F3K N04 N Y N 186 F3K N05 N Y N 187 F3K N06 N Y N 188 F3K N07 N Y N 189 F3K N08 N Y N 190 F3K N09 N Y N 191 F3K N10 N Y N 192 F3K N11 N Y N 193 F3K N12 N Y N 194 F3K BR1 BR N N 195 F3K RU1 RU N N 196 F3K H171 H N N 197 F3K H181 H N N 198 F3K H191 H N N 199 F3K H201 H N N 200 F3K H241 H N N 201 F3K H111 H N N 202 F3K H101 H N N 203 F3K H121 H N N 204 F3K H261 H N N 205 F3K H291 H N N 206 F3K H021 H N N 207 F3K H031 H N N 208 F3K H041 H N N 209 F3K H161 H N N 210 F3K H231 H N N 211 F3K H271 H N N 212 F3K H301 H N N 213 F3K H331 H N N 214 F3K H341 H N N 215 F3K H371 H N N 216 F3K H381 H N N 217 HOH O O N N 218 HOH H1 H N N 219 HOH H2 H N N 220 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 F3K C33 C34 doub Y N 150 F3K C33 C31 sing Y N 151 F3K C34 C35 sing Y N 152 F3K N10 C31 doub Y N 153 F3K N10 C30 sing Y N 154 F3K C31 C32 sing Y N 155 F3K C35 N12 doub Y N 156 F3K C35 C36 sing Y N 157 F3K N12 C37 sing Y N 158 F3K C30 C29 doub Y N 159 F3K C32 C36 sing Y N 160 F3K C32 N09 doub Y N 161 F3K C36 N11 doub Y N 162 F3K C37 C38 doub Y N 163 F3K C29 N09 sing Y N 164 F3K N09 RU1 sing N N 165 F3K N11 C38 sing Y N 166 F3K N11 RU1 sing N N 167 F3K C19 C20 doub Y N 168 F3K C19 N05 sing Y N 169 F3K C20 N06 sing Y N 170 F3K C12 C11 doub Y N 171 F3K C12 N03 sing Y N 172 F3K N05 RU1 sing N N 173 F3K N05 C21 doub Y N 174 F3K RU1 N03 sing N N 175 F3K RU1 N04 sing N N 176 F3K RU1 N08 sing N N 177 F3K C11 C10 sing Y N 178 F3K N06 C22 doub Y N 179 F3K N03 C13 doub Y N 180 F3K C21 C22 sing Y N 181 F3K C21 C28 sing Y N 182 F3K C10 C09 doub Y N 183 F3K C22 C23 sing Y N 184 F3K C13 C09 sing Y N 185 F3K C13 C14 sing Y N 186 F3K N04 C16 doub Y N 187 F3K N04 C14 sing Y N 188 F3K C16 C17 sing Y N 189 F3K C09 C07 sing Y N 190 F3K N08 C28 doub Y N 191 F3K N08 C27 sing Y N 192 F3K C14 C15 doub Y N 193 F3K C28 C25 sing Y N 194 F3K C23 C24 doub Y N 195 F3K C17 C18 doub Y N 196 F3K C07 N01 doub Y N 197 F3K C07 C08 sing Y N 198 F3K C27 C26 doub Y N 199 F3K C15 C18 sing Y N 200 F3K C15 C08 sing Y N 201 F3K N01 C05 sing Y N 202 F3K C25 C24 sing Y N 203 F3K C25 N07 doub Y N 204 F3K C08 N02 doub Y N 205 F3K C26 N07 sing Y N 206 F3K C05 C04 doub Y N 207 F3K C05 C06 sing Y N 208 F3K N02 C06 sing Y N 209 F3K C04 C01 sing Y N 210 F3K C06 C03 doub Y N 211 F3K C01 C02 doub Y N 212 F3K C01 BR1 sing N N 213 F3K C03 C02 sing Y N 214 F3K C17 H171 sing N N 215 F3K C18 H181 sing N N 216 F3K C19 H191 sing N N 217 F3K C20 H201 sing N N 218 F3K C24 H241 sing N N 219 F3K C11 H111 sing N N 220 F3K C10 H101 sing N N 221 F3K C12 H121 sing N N 222 F3K C26 H261 sing N N 223 F3K C29 H291 sing N N 224 F3K C02 H021 sing N N 225 F3K C03 H031 sing N N 226 F3K C04 H041 sing N N 227 F3K C16 H161 sing N N 228 F3K C23 H231 sing N N 229 F3K C27 H271 sing N N 230 F3K C30 H301 sing N N 231 F3K C33 H331 sing N N 232 F3K C34 H341 sing N N 233 F3K C37 H371 sing N N 234 F3K C38 H381 sing N N 235 HOH O H1 sing N N 236 HOH O H2 sing N N 237 # _ndb_struct_conf_na.entry_id 6GLD _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 A DG 9 7_555 0.072 -0.077 0.272 -13.273 6.987 0.979 1 B_DC2:DG9_B B 2 ? B 9 ? 19 1 1 A DG 3 1_555 A DC 8 7_555 -0.235 -0.032 0.263 24.689 -5.849 -0.827 2 B_DG3:DC8_B B 3 ? B 8 ? 19 1 1 A DG 4 1_555 A DC 7 7_555 -0.201 -0.180 -0.074 -9.060 2.142 -1.127 3 B_DG4:DC7_B B 4 ? B 7 ? 19 1 1 A DC 5 1_555 A DG 6 7_555 0.246 -0.072 0.305 -3.613 -5.172 0.404 4 B_DC5:DG6_B B 5 ? B 6 ? 19 1 1 A DG 6 1_555 A DC 5 7_555 -0.246 -0.072 0.305 3.613 -5.172 0.404 5 B_DG6:DC5_B B 6 ? B 5 ? 19 1 1 A DC 7 1_555 A DG 4 7_555 0.201 -0.180 -0.074 9.060 2.142 -1.127 6 B_DC7:DG4_B B 7 ? B 4 ? 19 1 1 A DC 8 1_555 A DG 3 7_555 0.235 -0.032 0.263 -24.689 -5.849 -0.827 7 B_DC8:DG3_B B 8 ? B 3 ? 19 1 1 A DG 9 1_555 A DC 2 7_555 -0.072 -0.077 0.272 13.273 6.987 0.979 8 B_DG9:DC2_B B 9 ? B 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 A DG 9 7_555 A DG 3 1_555 A DC 8 7_555 -0.537 1.656 2.581 1.059 3.408 19.612 3.460 1.964 2.792 9.899 -3.077 19.931 1 BB_DC2DG3:DC8DG9_BB B 2 ? B 9 ? B 3 ? B 8 ? 1 A DG 3 1_555 A DC 8 7_555 A DG 4 1_555 A DC 7 7_555 -0.132 0.796 5.231 -2.207 50.678 16.134 -5.276 -0.120 2.404 73.440 3.198 53.068 2 BB_DG3DG4:DC7DC8_BB B 3 ? B 8 ? B 4 ? B 7 ? 1 A DG 4 1_555 A DC 7 7_555 A DC 5 1_555 A DG 6 7_555 -0.840 0.176 3.218 -3.235 -4.096 39.400 0.731 0.863 3.241 -6.042 4.772 39.730 3 BB_DG4DC5:DG6DC7_BB B 4 ? B 7 ? B 5 ? B 6 ? 1 A DC 5 1_555 A DG 6 7_555 A DG 6 1_555 A DC 5 7_555 0.000 0.968 3.503 0.000 25.306 25.810 -2.784 0.000 3.201 45.148 0.000 35.995 4 BB_DC5DG6:DC5DG6_BB B 5 ? B 6 ? B 6 ? B 5 ? 1 A DG 6 1_555 A DC 5 7_555 A DC 7 1_555 A DG 4 7_555 0.840 0.176 3.218 3.235 -4.096 39.400 0.731 -0.863 3.241 -6.042 -4.772 39.730 5 BB_DG6DC7:DG4DC5_BB B 6 ? B 5 ? B 7 ? B 4 ? 1 A DC 7 1_555 A DG 4 7_555 A DC 8 1_555 A DG 3 7_555 0.132 0.796 5.231 2.207 50.678 16.134 -5.276 0.120 2.404 73.440 -3.198 53.068 6 BB_DC7DC8:DG3DG4_BB B 7 ? B 4 ? B 8 ? B 3 ? 1 A DC 8 1_555 A DG 3 7_555 A DG 9 1_555 A DC 2 7_555 0.537 1.656 2.581 -1.059 3.408 19.612 3.460 -1.964 2.792 9.899 3.077 19.931 7 BB_DC8DG9:DC2DG3_BB B 8 ? B 3 ? B 9 ? B 2 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/K019279/1 1 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/M004635/1 2 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/P021328/1 3 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id F3K _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id F3K _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 6GLD _atom_sites.fract_transf_matrix[1][1] 0.023733 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023733 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025580 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA BR C H N O P RU # loop_