HEADER VIRUS 19-OCT-18 6ILO TITLE CRYO-EM STRUCTURE OF EMPTY ECHOVIRUS 6 PARTICLE AT PH 7.4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: CAPSID PROTEIN VP2; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: CAPSID PROTEIN VP3; COMPND 9 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ECHOVIRUS E6; SOURCE 3 ORGANISM_TAXID: 12062; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ECHOVIRUS E6; SOURCE 6 ORGANISM_TAXID: 12062; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ECHOVIRUS E6; SOURCE 9 ORGANISM_TAXID: 12062 KEYWDS VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR G.F.GAO,S.LIU,X.ZHAO,R.PENG REVDAT 5 27-MAR-24 6ILO 1 REMARK REVDAT 4 12-JUN-19 6ILO 1 JRNL REVDAT 3 05-JUN-19 6ILO 1 JRNL REVDAT 2 29-MAY-19 6ILO 1 JRNL REVDAT 1 15-MAY-19 6ILO 0 JRNL AUTH X.ZHAO,G.ZHANG,S.LIU,X.CHEN,R.PENG,L.DAI,X.QU,S.LI,H.SONG, JRNL AUTH 2 Z.GAO,P.YUAN,Z.LIU,C.LI,Z.SHANG,Y.LI,M.ZHANG,J.QI,H.WANG, JRNL AUTH 3 N.DU,Y.WU,Y.BI,S.GAO,Y.SHI,J.YAN,Y.ZHANG,Z.XIE,W.WEI,G.F.GAO JRNL TITL HUMAN NEONATAL FC RECEPTOR IS THE CELLULAR UNCOATING JRNL TITL 2 RECEPTOR FOR ENTEROVIRUS B. JRNL REF CELL V. 177 1553 2019 JRNL REFN ISSN 1097-4172 JRNL PMID 31104841 JRNL DOI 10.1016/J.CELL.2019.04.035 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 15077 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6ILO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009425. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ECHOVIRUS E6 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.785317 -0.524976 -0.328141 257.73157 REMARK 350 BIOMT2 2 0.535123 0.309071 0.786205 -149.67189 REMARK 350 BIOMT3 2 -0.311320 -0.793016 0.523646 381.56603 REMARK 350 BIOMT1 3 0.437954 -0.314307 -0.842263 413.49947 REMARK 350 BIOMT2 3 0.340870 -0.808876 0.479091 241.97611 REMARK 350 BIOMT3 3 -0.831868 -0.496922 -0.247112 619.82654 REMARK 350 BIOMT1 4 0.437954 0.340870 -0.831868 252.03776 REMARK 350 BIOMT2 4 -0.314307 -0.808876 -0.496922 633.69978 REMARK 350 BIOMT3 4 -0.842263 0.479091 -0.247112 385.51361 REMARK 350 BIOMT1 5 0.785317 0.535123 -0.311320 -3.51897 REMARK 350 BIOMT2 5 -0.524976 0.309071 -0.793016 484.15032 REMARK 350 BIOMT3 5 -0.328141 0.786205 0.523646 2.43974 REMARK 350 BIOMT1 6 -0.565183 0.293631 -0.770940 484.38445 REMARK 350 BIOMT2 6 0.293631 -0.801711 -0.520615 494.87238 REMARK 350 BIOMT3 6 -0.770940 -0.520615 0.366894 461.68121 REMARK 350 BIOMT1 7 -0.046710 0.998829 0.012615 0.60600 REMARK 350 BIOMT2 7 -0.036342 0.010921 -0.999280 491.89497 REMARK 350 BIOMT3 7 -0.998247 -0.047135 0.035789 480.90150 REMARK 350 BIOMT1 8 0.493886 0.323227 0.807218 -156.11583 REMARK 350 BIOMT2 8 0.288401 0.814899 -0.502757 99.60279 REMARK 350 BIOMT3 8 -0.820306 0.481107 0.309249 244.33231 REMARK 350 BIOMT1 9 0.309520 -0.799516 0.514755 230.80321 REMARK 350 BIOMT2 9 0.819075 0.499153 0.282776 -139.86971 REMARK 350 BIOMT3 9 -0.483025 0.334098 0.809361 78.90423 REMARK 350 BIOMT1 10 -0.345021 -0.817807 -0.460601 626.65415 REMARK 350 BIOMT2 10 0.822308 -0.499967 0.271739 104.42033 REMARK 350 BIOMT3 10 -0.452515 -0.285000 0.844988 213.23323 REMARK 350 BIOMT1 11 0.360524 -0.812662 0.457825 235.87492 REMARK 350 BIOMT2 11 -0.812662 -0.514585 -0.273466 624.98710 REMARK 350 BIOMT3 11 0.457825 -0.273466 -0.845939 408.43033 REMARK 350 BIOMT1 12 -0.294278 -0.803499 -0.517484 625.11634 REMARK 350 BIOMT2 12 -0.828428 0.484448 -0.281101 388.21219 REMARK 350 BIOMT3 12 0.476558 0.345976 -0.808204 244.57481 REMARK 350 BIOMT1 13 -0.499969 0.316524 -0.806129 472.07867 REMARK 350 BIOMT2 13 -0.303827 0.807552 0.505519 -5.06663 REMARK 350 BIOMT3 13 0.810999 0.497668 -0.307582 7.23303 REMARK 350 BIOMT1 14 0.027709 0.999574 -0.009213 -11.74522 REMARK 350 BIOMT2 14 0.036160 0.008208 0.999312 -11.35139 REMARK 350 BIOMT3 14 0.998962 -0.028023 -0.035917 24.40328 REMARK 350 BIOMT1 15 0.559523 0.301699 0.771953 -157.72716 REMARK 350 BIOMT2 15 -0.278317 -0.808917 0.517873 378.04323 REMARK 350 BIOMT3 15 0.780688 -0.504610 -0.368640 272.35685 REMARK 350 BIOMT1 16 -0.795341 0.519030 0.313115 219.71244 REMARK 350 BIOMT2 16 0.519030 0.316296 0.794081 -149.56138 REMARK 350 BIOMT3 16 0.313115 0.794081 -0.520955 104.30877 REMARK 350 BIOMT1 17 -0.444329 0.329647 0.833009 56.51791 REMARK 350 BIOMT2 17 0.329647 -0.804440 0.494175 239.86284 REMARK 350 BIOMT3 17 0.833009 0.494175 0.248769 -132.62202 REMARK 350 BIOMT1 18 -0.431871 -0.325443 0.841174 210.50949 REMARK 350 BIOMT2 18 -0.325443 -0.813575 -0.481853 633.78584 REMARK 350 BIOMT3 18 0.841174 -0.481853 0.245446 103.02843 REMARK 350 BIOMT1 19 -0.775182 -0.540928 0.326326 468.87606 REMARK 350 BIOMT2 19 -0.540928 0.301515 -0.785166 487.81943 REMARK 350 BIOMT3 19 0.326326 -0.785166 -0.526332 485.59920 REMARK 350 BIOMT1 20 -0.999819 -0.019015 -0.000032 474.56379 REMARK 350 BIOMT2 20 -0.019015 0.999813 0.003405 3.68422 REMARK 350 BIOMT3 20 -0.000032 0.003405 -0.999994 486.39049 REMARK 350 BIOMT1 21 -0.028424 -0.999548 -0.009789 486.52194 REMARK 350 BIOMT2 21 0.039027 -0.010895 0.999179 -7.35863 REMARK 350 BIOMT3 21 -0.998834 0.028018 0.039319 461.94909 REMARK 350 BIOMT1 22 -0.554155 -0.286246 -0.781649 625.06523 REMARK 350 BIOMT2 22 -0.286246 -0.816221 0.501843 385.58331 REMARK 350 BIOMT3 22 -0.781649 0.501843 0.370376 215.32740 REMARK 350 BIOMT1 23 -0.345021 0.822308 -0.452515 226.83433 REMARK 350 BIOMT2 23 -0.817807 -0.499967 -0.285000 625.46014 REMARK 350 BIOMT3 23 -0.460601 0.271739 0.844988 80.08270 REMARK 350 BIOMT1 24 0.309962 0.794131 0.522761 -157.82919 REMARK 350 BIOMT2 24 -0.821055 0.500814 -0.273960 380.77022 REMARK 350 BIOMT3 24 -0.479366 -0.344299 0.807259 243.11856 REMARK 350 BIOMT1 25 0.505630 -0.331838 0.796381 2.66658 REMARK 350 BIOMT2 25 -0.291503 0.803077 0.519706 -10.33329 REMARK 350 BIOMT3 25 -0.812013 -0.494926 0.309328 479.12497 REMARK 350 BIOMT1 26 -0.269887 0.798099 0.538701 -26.41432 REMARK 350 BIOMT2 26 -0.795564 -0.499993 0.342178 467.45570 REMARK 350 BIOMT3 26 0.542439 -0.336222 0.769880 10.14797 REMARK 350 BIOMT1 27 0.047425 -0.038845 0.998119 -9.87563 REMARK 350 BIOMT2 27 -0.998854 -0.008234 0.047140 467.81214 REMARK 350 BIOMT3 27 0.006387 -0.999211 -0.039191 494.03455 REMARK 350 BIOMT1 28 -0.294278 -0.828428 0.476558 389.00972 REMARK 350 BIOMT2 28 -0.803499 0.484448 0.345976 229.59504 REMARK 350 BIOMT3 28 -0.517484 -0.281101 -0.808204 630.28051 REMARK 350 BIOMT1 29 -0.822775 -0.479472 -0.305202 618.99574 REMARK 350 BIOMT2 29 -0.479472 0.297182 0.825705 82.01234 REMARK 350 BIOMT3 29 -0.305202 0.825705 -0.474408 230.59858 REMARK 350 BIOMT1 30 -0.807700 0.525776 -0.266796 362.24956 REMARK 350 BIOMT2 30 -0.474568 -0.311235 0.823358 229.01831 REMARK 350 BIOMT3 30 0.349866 0.791639 0.500901 -152.66441 REMARK 350 BIOMT1 31 0.797565 0.540128 0.268610 -148.88538 REMARK 350 BIOMT2 31 0.480373 -0.299350 -0.824397 403.13226 REMARK 350 BIOMT3 31 -0.364872 0.786544 -0.498215 259.91950 REMARK 350 BIOMT1 32 0.831753 -0.464777 0.303595 78.32286 REMARK 350 BIOMT2 32 0.473708 0.309055 -0.824673 257.18207 REMARK 350 BIOMT3 32 0.289462 0.829739 0.477226 -141.94469 REMARK 350 BIOMT1 33 0.309962 -0.821055 -0.479366 478.09724 REMARK 350 BIOMT2 33 0.794131 0.500814 -0.344299 18.34756 REMARK 350 BIOMT3 33 0.522761 -0.273960 0.807259 -9.43661 REMARK 350 BIOMT1 34 -0.046710 -0.036342 -0.998247 497.96315 REMARK 350 BIOMT2 34 0.998829 0.010921 -0.047135 16.68990 REMARK 350 BIOMT3 34 0.012615 -0.999280 0.035789 474.32208 REMARK 350 BIOMT1 35 0.254645 0.804916 -0.535972 110.46658 REMARK 350 BIOMT2 35 0.804916 -0.483607 -0.343852 254.49993 REMARK 350 BIOMT3 35 -0.535972 -0.343852 -0.771038 640.79331 REMARK 350 BIOMT1 36 -0.499254 -0.338679 -0.797522 628.74957 REMARK 350 BIOMT2 36 0.276163 0.810239 -0.516959 107.06877 REMARK 350 BIOMT3 36 0.821267 -0.478340 -0.310985 242.40375 REMARK 350 BIOMT1 37 -0.325023 0.789869 -0.520065 246.45934 REMARK 350 BIOMT2 37 0.811393 0.515400 0.275690 -140.27942 REMARK 350 BIOMT3 37 0.485800 -0.332371 -0.808411 407.00306 REMARK 350 BIOMT1 38 0.329337 0.827175 0.455323 -153.96948 REMARK 350 BIOMT2 38 0.827175 -0.485294 0.283323 96.89537 REMARK 350 BIOMT3 38 0.455323 0.283323 -0.844043 273.49371 REMARK 350 BIOMT1 39 0.559523 -0.278317 0.780688 -19.15789 REMARK 350 BIOMT2 39 0.301699 -0.808917 -0.504610 490.82564 REMARK 350 BIOMT3 39 0.771953 0.517873 -0.368640 26.38110 REMARK 350 BIOMT1 40 0.047425 -0.998854 0.006387 464.58909 REMARK 350 BIOMT2 40 -0.038845 -0.008234 -0.999211 497.11315 REMARK 350 BIOMT3 40 0.998119 0.047140 -0.039191 7.16645 REMARK 350 BIOMT1 41 -0.028424 0.039027 -0.998834 475.52632 REMARK 350 BIOMT2 41 -0.999548 -0.010895 0.028018 473.27883 REMARK 350 BIOMT3 41 -0.009789 0.999179 0.039319 -6.04818 REMARK 350 BIOMT1 42 0.309520 0.819075 -0.483025 81.23831 REMARK 350 BIOMT2 42 -0.799516 0.499153 0.334098 227.98534 REMARK 350 BIOMT3 42 0.514755 0.282776 0.809361 -143.11729 REMARK 350 BIOMT1 43 0.831753 0.473708 0.289462 -145.88694 REMARK 350 BIOMT2 43 -0.464777 0.309055 0.829739 74.69630 REMARK 350 BIOMT3 43 0.303595 -0.824673 0.477226 256.05243 REMARK 350 BIOMT1 44 0.816566 -0.519789 0.251075 108.02995 REMARK 350 BIOMT2 44 -0.457930 -0.318480 0.829982 225.25196 REMARK 350 BIOMT3 44 -0.351453 -0.792711 -0.498087 639.82200 REMARK 350 BIOMT1 45 0.284948 -0.788437 -0.545135 492.08446 REMARK 350 BIOMT2 45 -0.788437 -0.516220 0.334492 471.58951 REMARK 350 BIOMT3 45 -0.545135 0.334492 -0.768728 477.83491 REMARK 350 BIOMT1 46 0.797565 0.480373 -0.364872 19.92897 REMARK 350 BIOMT2 46 0.540128 -0.299350 0.786544 -3.34303 REMARK 350 BIOMT3 46 0.268610 -0.824397 -0.498215 501.82894 REMARK 350 BIOMT1 47 0.996992 0.019116 -0.075105 14.36569 REMARK 350 BIOMT2 47 0.019116 -0.999817 -0.000719 480.78773 REMARK 350 BIOMT3 47 -0.075105 -0.000719 -0.997175 504.34557 REMARK 350 BIOMT1 48 0.816566 -0.457930 -0.351453 239.80356 REMARK 350 BIOMT2 48 -0.519789 -0.318480 -0.792711 635.08466 REMARK 350 BIOMT3 48 0.251075 0.829982 -0.498087 104.60803 REMARK 350 BIOMT1 49 0.505630 -0.291503 -0.812013 384.69511 REMARK 350 BIOMT2 49 -0.331838 0.803077 -0.494926 246.31465 REMARK 350 BIOMT3 49 0.796381 0.519706 0.309328 -144.95997 REMARK 350 BIOMT1 50 0.493886 0.288401 -0.820306 248.80514 REMARK 350 BIOMT2 50 0.323227 0.814899 0.481107 -148.25536 REMARK 350 BIOMT3 50 0.807218 -0.502757 0.309249 100.53605 REMARK 350 BIOMT1 51 -0.499254 0.276163 0.821267 85.25933 REMARK 350 BIOMT2 51 -0.338679 0.810239 -0.478340 242.14451 REMARK 350 BIOMT3 51 -0.797522 -0.516959 -0.310985 632.17577 REMARK 350 BIOMT1 52 -0.499969 -0.303827 0.810999 228.61942 REMARK 350 BIOMT2 52 0.316524 0.807551 0.497668 -148.93215 REMARK 350 BIOMT3 52 -0.806129 0.505519 -0.307582 385.34223 REMARK 350 BIOMT1 53 -0.807700 -0.474568 0.349866 454.68575 REMARK 350 BIOMT2 53 0.525776 -0.311235 0.791639 1.67139 REMARK 350 BIOMT3 53 -0.266796 0.823358 0.500901 -15.44757 REMARK 350 BIOMT1 54 -0.997173 -0.000101 0.075137 451.04233 REMARK 350 BIOMT2 54 -0.000101 -0.999996 -0.002686 485.82616 REMARK 350 BIOMT3 54 0.075137 -0.002686 0.997170 -16.31575 REMARK 350 BIOMT1 55 -0.806543 0.463876 0.366479 222.72424 REMARK 350 BIOMT2 55 -0.534364 -0.306887 -0.787576 634.44672 REMARK 350 BIOMT3 55 -0.252870 -0.831047 0.495396 383.93749 REMARK 350 BIOMT1 56 -0.269887 -0.795564 0.542439 359.25719 REMARK 350 BIOMT2 56 0.798099 -0.499993 -0.336222 258.21779 REMARK 350 BIOMT3 56 0.538701 0.342178 0.769880 -153.53622 REMARK 350 BIOMT1 57 -0.806543 -0.534364 -0.252870 615.74839 REMARK 350 BIOMT2 57 0.463876 -0.306887 -0.831047 410.45720 REMARK 350 BIOMT3 57 0.366479 -0.787576 0.495396 227.84981 REMARK 350 BIOMT1 58 -0.840619 0.458790 -0.287874 391.36944 REMARK 350 BIOMT2 58 0.458790 0.320660 -0.828667 258.84576 REMARK 350 BIOMT3 58 -0.287874 -0.828667 -0.480041 629.20742 REMARK 350 BIOMT1 59 -0.325023 0.811393 0.485800 -3.79557 REMARK 350 BIOMT2 59 0.789869 0.515400 -0.332371 12.90534 REMARK 350 BIOMT3 59 -0.520065 0.275690 -0.808411 495.87404 REMARK 350 BIOMT1 60 0.027709 0.036160 0.998962 -23.64204 REMARK 350 BIOMT2 60 0.999574 0.008208 -0.028023 12.51723 REMARK 350 BIOMT3 60 -0.009213 0.999312 -0.035917 12.11186 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 44 REMARK 465 GLU B 45 REMARK 465 GLU B 46 REMARK 465 ALA B 47 REMARK 465 THR B 48 REMARK 465 ALA B 49 REMARK 465 GLU B 50 REMARK 465 TYR C 176 REMARK 465 ARG C 177 REMARK 465 PHE C 178 REMARK 465 VAL C 179 REMARK 465 SER C 180 REMARK 465 LYS C 181 REMARK 465 ASP C 182 REMARK 465 SER C 183 REMARK 465 TYR C 184 REMARK 465 THR C 185 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 84 OG SER B 147 1.34 REMARK 500 OD2 ASP B 84 CB SER B 147 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE B 82 CB - CA - C ANGL. DEV. = 21.1 DEGREES REMARK 500 PRO B 83 C - N - CA ANGL. DEV. = -21.5 DEGREES REMARK 500 PRO B 83 C - N - CD ANGL. DEV. = 20.0 DEGREES REMARK 500 LEU C 225 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 58 -53.65 -124.17 REMARK 500 ARG A 132 51.90 -118.24 REMARK 500 THR A 166 56.57 -95.41 REMARK 500 PHE A 202 71.69 60.10 REMARK 500 ASN A 211 73.77 57.06 REMARK 500 THR A 228 -167.86 -79.85 REMARK 500 VAL A 249 77.62 40.47 REMARK 500 VAL B 58 103.51 -59.31 REMARK 500 ALA B 59 -5.06 -143.82 REMARK 500 CYS B 61 79.45 -100.55 REMARK 500 ASN B 138 35.79 -98.58 REMARK 500 GLU B 150 -159.35 -77.98 REMARK 500 VAL B 151 129.79 -38.09 REMARK 500 ASN B 196 -30.93 -132.46 REMARK 500 TYR B 231 -169.25 -160.90 REMARK 500 ALA B 232 -163.71 -79.67 REMARK 500 TYR B 238 113.56 -165.90 REMARK 500 SER C 16 57.30 -95.59 REMARK 500 ASP C 18 15.45 -140.98 REMARK 500 ASN C 57 38.25 -97.46 REMARK 500 GLU C 60 -8.12 74.52 REMARK 500 ASN C 63 49.12 -83.65 REMARK 500 SER C 64 -169.34 -162.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 57 VAL B 58 -130.17 REMARK 500 PHE B 82 PRO B 83 -52.75 REMARK 500 GLU B 150 VAL B 151 -148.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9689 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF EMPTY ECHOVIRUS 6 PARTICLE AT PH 7.4 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT REMARK 999 KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. REMARK 999 AUTHORS STATE THAT THE GENEBANK ACCESSION NUMBER IS MH830353.1 FOR REMARK 999 THE PROTEIN. DBREF 6ILO A 57 283 PDB 6ILO 6ILO 57 283 DBREF 6ILO B 10 258 PDB 6ILO 6ILO 10 258 DBREF 6ILO C 1 234 PDB 6ILO 6ILO 1 234 SEQRES 1 A 227 HIS VAL ARG SER GLU SER SER VAL GLU ASN PHE LEU SER SEQRES 2 A 227 ARG SER ALA CYS VAL TYR ILE VAL GLU TYR LYS THR ARG SEQRES 3 A 227 ASP ASP THR PRO ASP LYS MET TYR ASP SER TRP VAL ILE SEQRES 4 A 227 ASN THR ARG GLN VAL ALA GLN LEU ARG ARG LYS LEU GLU SEQRES 5 A 227 PHE PHE THR TYR VAL ARG PHE ASP VAL GLU VAL THR PHE SEQRES 6 A 227 VAL ILE THR SER VAL GLN ASP ASP SER THR ARG GLN ASN SEQRES 7 A 227 THR ASP THR PRO ALA LEU THR HIS GLN ILE MET TYR VAL SEQRES 8 A 227 PRO PRO GLY GLY PRO ILE PRO GLN ALA VAL ASP ASP TYR SEQRES 9 A 227 ASN TRP GLN THR SER THR ASN PRO SER VAL PHE TRP THR SEQRES 10 A 227 GLU GLY ASN ALA PRO PRO ARG MET SER ILE PRO PHE MET SEQRES 11 A 227 SER VAL GLY ASN ALA TYR SER ASN PHE TYR ASP GLY TRP SEQRES 12 A 227 SER HIS PHE SER GLN THR GLY VAL TYR GLY PHE ASN THR SEQRES 13 A 227 LEU ASN ASN MET GLY LYS LEU TYR PHE ARG HIS VAL ASN SEQRES 14 A 227 ASP LYS THR ILE SER PRO ILE THR SER LYS VAL ARG ILE SEQRES 15 A 227 TYR PHE LYS PRO LYS HIS VAL LYS ALA TRP VAL PRO ARG SEQRES 16 A 227 PRO PRO ARG LEU CYS GLU TYR THR HIS LYS ASP ASN VAL SEQRES 17 A 227 ASP PHE GLU PRO LYS GLY VAL THR THR SER ARG THR GLN SEQRES 18 A 227 LEU THR ILE SER ASN SER SEQRES 1 B 249 SER ASP ARG VAL ARG SER ILE THR LEU GLY ASN SER THR SEQRES 2 B 249 ILE THR THR GLN GLU SER ALA ASN VAL VAL VAL GLY TYR SEQRES 3 B 249 GLY VAL TRP PRO ASP TYR LEU SER ASP GLU GLU ALA THR SEQRES 4 B 249 ALA GLU ASP GLN PRO THR GLN PRO ASP VAL ALA THR CYS SEQRES 5 B 249 ARG PHE TYR THR LEU ASP SER VAL SER TRP MET LYS GLU SEQRES 6 B 249 SER GLN GLY TRP TRP TRP LYS PHE PRO ASP ALA LEU ARG SEQRES 7 B 249 ASP MET GLY LEU PHE GLY GLN ASN MET GLN TYR HIS TYR SEQRES 8 B 249 LEU GLY ARG SER GLY TYR THR ILE HIS VAL GLN CYS ASN SEQRES 9 B 249 ALA SER LYS PHE HIS GLN GLY CYS LEU LEU VAL VAL CYS SEQRES 10 B 249 VAL PRO GLU ALA GLU MET GLY ALA ALA ASN ILE ASN GLU SEQRES 11 B 249 LYS ILE ASN ARG GLU HIS LEU SER ASN GLY GLU VAL ALA SEQRES 12 B 249 ASN THR PHE SER GLY THR LYS SER SER ASN THR ASN ASP SEQRES 13 B 249 VAL GLN GLN ALA VAL PHE ASN ALA GLY MET GLY VAL ALA SEQRES 14 B 249 VAL GLY ASN LEU THR ILE PHE PRO HIS GLN TRP ILE ASN SEQRES 15 B 249 LEU ARG THR ASN ASN CYS ALA THR ILE VAL MET PRO TYR SEQRES 16 B 249 ILE ASN SER VAL PRO MET ASP ASN MET PHE ARG HIS TYR SEQRES 17 B 249 ASN PHE THR LEU MET ILE ILE PRO PHE ALA LYS LEU ASP SEQRES 18 B 249 TYR ALA ALA GLY SER SER THR TYR ILE PRO ILE THR VAL SEQRES 19 B 249 THR VAL ALA PRO MET CYS ALA GLU TYR ASN GLY LEU ARG SEQRES 20 B 249 LEU GLY SEQRES 1 C 234 GLY LEU PRO VAL MET ASN THR PRO GLY SER ASN GLN PHE SEQRES 2 C 234 LEU THR SER ASP ASP TYR GLN SER PRO THR ALA MET PRO SEQRES 3 C 234 GLN PHE ASP VAL THR PRO GLU MET ASN ILE PRO GLY GLU SEQRES 4 C 234 VAL LYS ASN LEU MET GLU ILE ALA GLU VAL ASP SER VAL SEQRES 5 C 234 VAL PRO VAL ASN ASN VAL ASN GLU ASN VAL ASN SER LEU SEQRES 6 C 234 GLU ALA TYR ARG ILE PRO VAL HIS SER VAL THR GLU THR SEQRES 7 C 234 GLY ALA GLN VAL PHE GLY PHE THR LEU GLN PRO GLY ALA SEQRES 8 C 234 ASP THR VAL MET GLU ARG THR LEU LEU GLY GLU ILE LEU SEQRES 9 C 234 ASN TYR TYR ALA ASN TRP SER GLY SER ILE LYS LEU THR SEQRES 10 C 234 PHE MET TYR CYS GLY SER ALA MET ALA THR GLY LYS PHE SEQRES 11 C 234 LEU LEU ALA TYR SER PRO PRO GLY ALA GLY VAL PRO LYS SEQRES 12 C 234 ASN ARG ARG GLU ALA MET LEU GLY THR HIS ILE ILE TRP SEQRES 13 C 234 ASP ILE GLY LEU GLN SER SER CYS VAL LEU CYS VAL PRO SEQRES 14 C 234 TRP ILE SER GLN THR HIS TYR ARG PHE VAL SER LYS ASP SEQRES 15 C 234 SER TYR THR ASP ALA GLY PHE ILE THR CYS TRP TYR GLN SEQRES 16 C 234 THR SER ILE VAL VAL PRO ALA GLU VAL GLN ASN GLN SER SEQRES 17 C 234 VAL ILE LEU CYS PHE VAL SER ALA CYS ASN ASP PHE SER SEQRES 18 C 234 VAL ARG LEU LEU ARG ASP SER PRO PHE VAL ARG GLN THR HELIX 1 AA1 VAL A 64 SER A 69 1 6 HELIX 2 AA2 VAL A 100 GLU A 108 1 9 HELIX 3 AA3 ASP A 159 GLN A 163 5 5 HELIX 4 AA4 ASN A 211 ASN A 215 5 5 HELIX 5 AA5 GLY B 90 HIS B 99 1 10 HELIX 6 AA6 ASN B 142 SER B 147 1 6 HELIX 7 AA7 ALA B 178 PHE B 185 5 8 HELIX 8 AA8 ASN C 42 VAL C 49 5 8 HELIX 9 AA9 THR C 98 ASN C 105 1 8 HELIX 10 AB1 ASN C 144 LEU C 150 1 7 HELIX 11 AB2 GLY C 159 GLN C 161 5 3 SHEET 1 AA1 4 CYS A 73 TYR A 79 0 SHEET 2 AA1 4 ILE A 232 PRO A 250 -1 O SER A 234 N TYR A 79 SHEET 3 AA1 4 PHE A 110 GLN A 127 -1 N ASP A 116 O LYS A 243 SHEET 4 AA1 4 TYR A 192 SER A 193 -1 O TYR A 192 N VAL A 113 SHEET 1 AA2 4 ARG A 180 ILE A 183 0 SHEET 2 AA2 4 PHE A 110 GLN A 127 -1 N VAL A 117 O ILE A 183 SHEET 3 AA2 4 ILE A 232 PRO A 250 -1 O LYS A 243 N ASP A 116 SHEET 4 AA2 4 GLU C 39 VAL C 40 -1 O VAL C 40 N ALA A 247 SHEET 1 AA3 4 TYR A 90 VAL A 94 0 SHEET 2 AA3 4 LYS A 218 HIS A 223 -1 O LEU A 219 N TRP A 93 SHEET 3 AA3 4 THR A 141 VAL A 147 -1 N VAL A 147 O LYS A 218 SHEET 4 AA3 4 SER A 169 THR A 173 -1 O TRP A 172 N HIS A 142 SHEET 1 AA4 2 ARG B 14 LEU B 18 0 SHEET 2 AA4 2 SER B 21 THR B 25 -1 O THR B 25 N ARG B 14 SHEET 1 AA5 5 VAL B 31 VAL B 33 0 SHEET 2 AA5 5 CYS B 197 MET B 202 1 O VAL B 201 N VAL B 32 SHEET 3 AA5 5 GLY B 102 GLN B 111 -1 N VAL B 110 O ALA B 198 SHEET 4 AA5 5 ILE B 239 TYR B 252 -1 O MET B 248 N GLY B 105 SHEET 5 AA5 5 TYR B 64 THR B 65 -1 N TYR B 64 O VAL B 245 SHEET 1 AA6 5 VAL B 31 VAL B 33 0 SHEET 2 AA6 5 CYS B 197 MET B 202 1 O VAL B 201 N VAL B 32 SHEET 3 AA6 5 GLY B 102 GLN B 111 -1 N VAL B 110 O ALA B 198 SHEET 4 AA6 5 ILE B 239 TYR B 252 -1 O MET B 248 N GLY B 105 SHEET 5 AA6 5 VAL B 69 TRP B 71 -1 N TRP B 71 O ILE B 239 SHEET 1 AA7 5 ASN B 153 THR B 154 0 SHEET 2 AA7 5 TRP B 78 LYS B 81 -1 N TRP B 79 O ASN B 153 SHEET 3 AA7 5 PHE B 219 ILE B 224 -1 O LEU B 221 N TRP B 80 SHEET 4 AA7 5 CYS B 121 PRO B 128 -1 N LEU B 123 O ILE B 224 SHEET 5 AA7 5 GLN B 188 ASN B 191 -1 O ILE B 190 N LEU B 122 SHEET 1 AA8 4 SER C 51 VAL C 52 0 SHEET 2 AA8 4 SER C 208 SER C 215 -1 O VAL C 214 N SER C 51 SHEET 3 AA8 4 TRP C 110 TYR C 120 -1 N LYS C 115 O SER C 215 SHEET 4 AA8 4 SER C 163 GLN C 173 -1 O LEU C 166 N LEU C 116 SHEET 1 AA9 4 ILE C 70 VAL C 72 0 SHEET 2 AA9 4 SER C 208 SER C 215 -1 O SER C 208 N VAL C 72 SHEET 3 AA9 4 TRP C 110 TYR C 120 -1 N LYS C 115 O SER C 215 SHEET 4 AA9 4 SER C 221 VAL C 222 -1 O SER C 221 N SER C 111 SHEET 1 AB1 4 GLN C 81 THR C 86 0 SHEET 2 AB1 4 PHE C 189 TYR C 194 -1 O CYS C 192 N VAL C 82 SHEET 3 AB1 4 LYS C 129 SER C 135 -1 N LEU C 131 O TRP C 193 SHEET 4 AB1 4 ILE C 155 ASP C 157 -1 O TRP C 156 N PHE C 130 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.002058 0.000000 0.000000 0.00000 SCALE2 0.000000 0.002058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002058 0.00000