HEADER MEMBRANE PROTEIN 30-DEC-18 6J20 TITLE CRYSTAL STRUCTURE OF THE HUMAN NK1 SUBSTANCE P RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBSTANCE-P RECEPTOR,ENDOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SPR,NK-1 RECEPTOR,NK-1R,TACHYKININ RECEPTOR 1,LYSIS PROTEIN, COMPND 5 LYSOZYME,MURAMIDASE; COMPND 6 EC: 3.2.1.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: THE FUSION PROTEIN OF SUBSTANCE-P RECEPTOR NK1R COMPND 10 (RESIDUES 2-226), MINI-T4L (RESIDUES 1001-1010, 1017-1117), LINKER COMPND 11 GGGSGG (RESIDUES 1011-1016), AND NK1R (RESIDUES 237-335) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: HUMAN, BACTERIOPHAGE T4; SOURCE 4 ORGANISM_TAXID: 9606, 10665; SOURCE 5 GENE: TACR1, NK1R, TAC1R, E, T4TP126; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS GPCR, COMPLEX, ANTAGONIST, SIGNALLING PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.CHEN,M.LU,H.ZHANG,B.WU,Q.ZHAO REVDAT 2 22-NOV-23 6J20 1 REMARK REVDAT 1 06-MAR-19 6J20 0 JRNL AUTH S.CHEN,M.LU,D.LIU,L.YANG,C.YI,L.MA,H.ZHANG,Q.LIU, JRNL AUTH 2 T.M.FRIMURER,M.W.WANG,T.W.SCHWARTZ,R.C.STEVENS,B.WU, JRNL AUTH 3 K.WUTHRICH,Q.ZHAO JRNL TITL HUMAN SUBSTANCE P RECEPTOR BINDING MODE OF THE ANTAGONIST JRNL TITL 2 DRUG APREPITANT BY NMR AND CRYSTALLOGRAPHY. JRNL REF NAT COMMUN V. 10 638 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30733446 JRNL DOI 10.1038/S41467-019-08568-5 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1201 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2774 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2100 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2648 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.54 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 126 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3147 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 101.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.12860 REMARK 3 B22 (A**2) : -9.12860 REMARK 3 B33 (A**2) : 18.25720 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.440 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.334 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.253 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.339 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.257 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3277 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4490 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1041 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 51 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 481 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3277 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 442 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3746 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.46 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.62 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -86.8273 55.3825 343.9060 REMARK 3 T TENSOR REMARK 3 T11: -0.4676 T22: -0.2220 REMARK 3 T33: -0.4724 T12: 0.0604 REMARK 3 T13: -0.0147 T23: 0.1099 REMARK 3 L TENSOR REMARK 3 L11: 0.0307 L22: 1.4075 REMARK 3 L33: 4.8976 L12: 0.4222 REMARK 3 L13: 0.5839 L23: 1.7571 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: 0.0534 S13: 0.0278 REMARK 3 S21: -0.0904 S22: -0.1728 S23: -0.1261 REMARK 3 S31: -0.5015 S32: 0.7599 S33: 0.1368 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010327. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GRV, 4U15 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, PH 6.0-6.6, 25-35% PEG 400, REMARK 280 200-350MM AMMONIUM TARTRATE DIBASIC, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.25600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.25600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.48100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.25600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.25600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.48100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.25600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.25600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.48100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.25600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.25600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.48100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 ASP A 10 REMARK 465 LEU A 11 REMARK 465 SER A 12 REMARK 465 PRO A 13 REMARK 465 ASN A 14 REMARK 465 ILE A 15 REMARK 465 SER A 16 REMARK 465 THR A 17 REMARK 465 ASN A 18 REMARK 465 THR A 19 REMARK 465 SER A 20 REMARK 465 GLU A 21 REMARK 465 PRO A 22 REMARK 465 ASN A 23 REMARK 465 GLN A 24 REMARK 465 GLY A 1011 REMARK 465 GLY A 1012 REMARK 465 GLY A 1013 REMARK 465 SER A 1014 REMARK 465 GLY A 1015 REMARK 465 GLY A 1016 REMARK 465 CYS A 322 REMARK 465 CYS A 323 REMARK 465 PRO A 324 REMARK 465 PHE A 325 REMARK 465 ILE A 326 REMARK 465 SER A 327 REMARK 465 ALA A 328 REMARK 465 GLY A 329 REMARK 465 ASP A 330 REMARK 465 TYR A 331 REMARK 465 GLU A 332 REMARK 465 GLY A 333 REMARK 465 LEU A 334 REMARK 465 GLU A 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 25 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP A 30 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 30 CZ3 CH2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 142 CG CD1 CD2 REMARK 470 SER A 176 OG REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 ASP A1017 CG OD1 OD2 REMARK 470 GLU A1018 CG CD OE1 OE2 REMARK 470 GLU A1020 CG CD OE1 OE2 REMARK 470 GLN A1025 CG CD OE1 NE2 REMARK 470 LYS A1103 CG CD CE NZ REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LEU A 277 CG CD1 CD2 REMARK 470 TYR A 278 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 279 CG CD1 CD2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 PHE A 282 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 318 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 320 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 61 -19.46 65.17 REMARK 500 ARG A 64 84.76 -66.64 REMARK 500 VAL A 66 -58.54 68.76 REMARK 500 HIS A 136 66.49 -119.80 REMARK 500 ASN A 189 12.97 -146.89 REMARK 500 TYR A 205 -82.53 -137.40 REMARK 500 ARG A1081 72.78 -102.69 REMARK 500 PRO A 271 -7.58 -53.18 REMARK 500 LYS A 281 -175.54 -67.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GBQ A 1201 DBREF 6J20 A 2 226 UNP P25103 NK1R_HUMAN 2 226 DBREF 6J20 A 1001 1010 UNP D9IEF7 D9IEF7_BPT4 2 11 DBREF 6J20 A 1017 1117 UNP D9IEF7 D9IEF7_BPT4 61 161 DBREF 6J20 A 237 335 UNP P25103 NK1R_HUMAN 237 335 SEQADV 6J20 ASN A 78 UNP P25103 GLU 78 ENGINEERED MUTATION SEQADV 6J20 TRP A 121 UNP P25103 TYR 121 ENGINEERED MUTATION SEQADV 6J20 ARG A 222 UNP P25103 THR 222 ENGINEERED MUTATION SEQADV 6J20 GLY A 1011 UNP D9IEF7 LINKER SEQADV 6J20 GLY A 1012 UNP D9IEF7 LINKER SEQADV 6J20 GLY A 1013 UNP D9IEF7 LINKER SEQADV 6J20 SER A 1014 UNP D9IEF7 LINKER SEQADV 6J20 GLY A 1015 UNP D9IEF7 LINKER SEQADV 6J20 GLY A 1016 UNP D9IEF7 LINKER SEQADV 6J20 ALA A 1053 UNP D9IEF7 CYS 97 ENGINEERED MUTATION SEQRES 1 A 441 ASP ASN VAL LEU PRO VAL ASP SER ASP LEU SER PRO ASN SEQRES 2 A 441 ILE SER THR ASN THR SER GLU PRO ASN GLN PHE VAL GLN SEQRES 3 A 441 PRO ALA TRP GLN ILE VAL LEU TRP ALA ALA ALA TYR THR SEQRES 4 A 441 VAL ILE VAL VAL THR SER VAL VAL GLY ASN VAL VAL VAL SEQRES 5 A 441 MET TRP ILE ILE LEU ALA HIS LYS ARG MET ARG THR VAL SEQRES 6 A 441 THR ASN TYR PHE LEU VAL ASN LEU ALA PHE ALA ASN ALA SEQRES 7 A 441 SER MET ALA ALA PHE ASN THR VAL VAL ASN PHE THR TYR SEQRES 8 A 441 ALA VAL HIS ASN GLU TRP TYR TYR GLY LEU PHE TYR CYS SEQRES 9 A 441 LYS PHE HIS ASN PHE PHE PRO ILE ALA ALA VAL PHE ALA SEQRES 10 A 441 SER ILE TRP SER MET THR ALA VAL ALA PHE ASP ARG TYR SEQRES 11 A 441 MET ALA ILE ILE HIS PRO LEU GLN PRO ARG LEU SER ALA SEQRES 12 A 441 THR ALA THR LYS VAL VAL ILE CYS VAL ILE TRP VAL LEU SEQRES 13 A 441 ALA LEU LEU LEU ALA PHE PRO GLN GLY TYR TYR SER THR SEQRES 14 A 441 THR GLU THR MET PRO SER ARG VAL VAL CYS MET ILE GLU SEQRES 15 A 441 TRP PRO GLU HIS PRO ASN LYS ILE TYR GLU LYS VAL TYR SEQRES 16 A 441 HIS ILE CYS VAL THR VAL LEU ILE TYR PHE LEU PRO LEU SEQRES 17 A 441 LEU VAL ILE GLY TYR ALA TYR THR VAL VAL GLY ILE ARG SEQRES 18 A 441 LEU TRP ALA SER ASN ILE PHE GLU MET LEU ARG ILE ASP SEQRES 19 A 441 GLU GLY GLY GLY SER GLY GLY ASP GLU ALA GLU LYS LEU SEQRES 20 A 441 PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE LEU SEQRES 21 A 441 ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU ASP SEQRES 22 A 441 ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE GLN SEQRES 23 A 441 MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER LEU SEQRES 24 A 441 ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA VAL SEQRES 25 A 441 ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO ASN SEQRES 26 A 441 ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY THR SEQRES 27 A 441 TRP ASP ALA TYR HIS GLU GLN VAL SER ALA LYS ARG LYS SEQRES 28 A 441 VAL VAL LYS MET MET ILE VAL VAL VAL CYS THR PHE ALA SEQRES 29 A 441 ILE CYS TRP LEU PRO PHE HIS ILE PHE PHE LEU LEU PRO SEQRES 30 A 441 TYR ILE ASN PRO ASP LEU TYR LEU LYS LYS PHE ILE GLN SEQRES 31 A 441 GLN VAL TYR LEU ALA ILE MET TRP LEU ALA MET SER SER SEQRES 32 A 441 THR MET TYR ASN PRO ILE ILE TYR CYS CYS LEU ASN ASP SEQRES 33 A 441 ARG PHE ARG LEU GLY PHE LYS HIS ALA PHE ARG CYS CYS SEQRES 34 A 441 PRO PHE ILE SER ALA GLY ASP TYR GLU GLY LEU GLU HET GBQ A1201 37 HETNAM GBQ 5-[[(2~{R},3~{S})-2-[(1~{R})-1-[3,5- HETNAM 2 GBQ BIS(TRIFLUOROMETHYL)PHENYL]ETHOXY]-3-(4-FLUOROPHENYL) HETNAM 3 GBQ MORPHOLIN-4-YL]METHYL]-1,2-DIHYDRO-1,2,4-TRIAZOL-3-ONE FORMUL 2 GBQ C23 H21 F7 N4 O3 HELIX 1 AA1 PRO A 28 LYS A 61 1 34 HELIX 2 AA2 VAL A 66 ASN A 96 1 31 HELIX 3 AA3 TYR A 100 HIS A 136 1 37 HELIX 4 AA4 SER A 143 TYR A 168 1 26 HELIX 5 AA5 LYS A 190 TYR A 205 1 16 HELIX 6 AA6 TYR A 205 ALA A 225 1 21 HELIX 7 AA7 ASN A 1001 GLU A 1010 1 10 HELIX 8 AA8 LEU A 1022 LEU A 1035 1 14 HELIX 9 AA9 LEU A 1040 LEU A 1047 1 8 HELIX 10 AB1 ASP A 1048 ALA A 1068 1 21 HELIX 11 AB2 PHE A 1070 GLN A 1079 1 10 HELIX 12 AB3 ARG A 1081 ALA A 1090 1 10 HELIX 13 AB4 SER A 1092 THR A 1098 1 7 HELIX 14 AB5 THR A 1098 GLY A 1112 1 15 HELIX 15 AB6 TRP A 1114 HIS A 237 5 5 HELIX 16 AB7 SER A 241 ASN A 274 1 34 HELIX 17 AB8 ASN A 274 LYS A 281 1 8 HELIX 18 AB9 PHE A 282 ASN A 309 1 28 HELIX 19 AC1 ASN A 309 ALA A 319 1 11 SHEET 1 AA1 2 SER A 169 THR A 173 0 SHEET 2 AA1 2 VAL A 178 ILE A 182 -1 O MET A 181 N THR A 170 SSBOND 1 CYS A 105 CYS A 180 1555 1555 2.04 SITE 1 AC1 16 ASN A 89 ASN A 109 PRO A 112 ILE A 113 SITE 2 AC1 16 VAL A 116 GLN A 165 ILE A 182 TRP A 184 SITE 3 AC1 16 GLU A 193 HIS A 197 VAL A 200 THR A 201 SITE 4 AC1 16 ILE A 204 TRP A 261 PHE A 264 HIS A 265 CRYST1 102.512 102.512 156.962 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006371 0.00000