data_6UC9 # _entry.id 6UC9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6UC9 pdb_00006uc9 10.2210/pdb6uc9/pdb WWPDB D_1000244355 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Same RNA bound to guanine' 6UBU unspecified PDB 'Same RNA bound to N2-acetylguanine' 6UC7 unspecified PDB 'Same RNA bound to 8-aminoguanine' 6UC8 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6UC9 _pdbx_database_status.recvd_initial_deposition_date 2019-09-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Matyjasik, M.M.' 1 0000-0002-5887-8428 'Batey, R.T.' 2 0000-0002-1384-6625 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Molecules _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1420-3049 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine Riboswitch. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/molecules25102295 _citation.pdbx_database_id_PubMed 32414072 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Matyjasik, M.M.' 1 ? primary 'Hall, S.D.' 2 ? primary 'Batey, R.T.' 3 0000-0002-1384-6625 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 91.55 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6UC9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 133.468 _cell.length_a_esd ? _cell.length_b 35.171 _cell.length_b_esd ? _cell.length_c 41.889 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Guanine riboswitch' 21506.783 1 ? ? ? ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 7 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn '6-O-CYCLOHEXYLMETHYL GUANINE' 247.296 1 ? ? ? ? 5 water nat water 18.015 197 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 U n 1 7 A n 1 8 U n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 G n 1 25 C n 1 26 A n 1 27 C n 1 28 G n 1 29 C n 1 30 A n 1 31 A n 1 32 G n 1 33 U n 1 34 U n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 C n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 G n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 U n 1 54 G n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 A n 1 60 C n 1 61 U n 1 62 A n 1 63 U n 1 64 G n 1 65 U n 1 66 C n 1 67 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 67 _pdbx_entity_src_syn.organism_scientific 'Bacillus subtilis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1423 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6UC9 _struct_ref.pdbx_db_accession 6UC9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6UC9 _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6UC9 _struct_ref_seq.db_align_beg 15 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 81 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 81 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CMG non-polymer . '6-O-CYCLOHEXYLMETHYL GUANINE' ? 'C12 H17 N5 O' 247.296 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6UC9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10 mM potassium HEPES pH 7.5, 22.6% v/v PEG 3000 MW, 35-45 mM cobalt hexamine, and 600-650 mM ammonium acetate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 200K' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-06-20 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator Cu _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5406 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5406 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 26.30 _reflns.entry_id 6UC9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.941 _reflns.d_resolution_low 19.86 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14355 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.91 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.6 _reflns.pdbx_Rmerge_I_obs 0.158 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.158 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.96 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.041 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.171 _reflns.pdbx_Rpim_I_all 0.064 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.941 _reflns_shell.d_res_low 2.011 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.085 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1226 _reflns_shell.percent_possible_all 85.26 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.445 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.pdbx_Rsym_value 0.445 _reflns_shell.pdbx_chi_squared 0.536 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.513 _reflns_shell.pdbx_Rpim_I_all 0.248 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.588 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6UC9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.941 _refine.ls_d_res_low 19.86 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14355 _refine.ls_number_reflns_R_free 2613 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.55 _refine.ls_percent_reflns_R_free 9.82 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1893 _refine.ls_R_factor_R_free 0.2111 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1869 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4FE5 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.39 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 6UC9 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1422 _refine_hist.pdbx_number_atoms_ligand 71 _refine_hist.number_atoms_solvent 197 _refine_hist.number_atoms_total 1690 _refine_hist.d_res_high 1.941 _refine_hist.d_res_low 19.86 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.941 _refine_ls_shell.d_res_low 1.976 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 97 _refine_ls_shell.number_reflns_R_work 837 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3070 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2626 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6UC9 _struct.title 'Guanine riboswitch bound to O6-cyclohexylmethyl guanine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6UC9 _struct_keywords.text 'riboswitch aptamer guanine purine nucleobase, RNA, O6-methylcyclohexyl guanine' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 4 ? K N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 67 N3 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 67 O2 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 67 N4 ? ? B G 15 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 66 N3 ? ? B G 16 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 66 O2 ? ? B G 16 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 66 N4 ? ? B G 16 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 65 N3 ? ? B A 17 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 65 O4 ? ? B A 17 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 64 N1 ? ? B C 18 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 64 O6 ? ? B C 18 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 64 N2 ? ? B C 18 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 63 N3 ? ? B A 19 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 63 O4 ? ? B A 19 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 62 N1 ? ? B U 20 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 62 N6 ? ? B U 20 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 61 N3 ? ? B A 21 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 61 O4 ? ? B A 21 B U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? B U 22 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? B U 22 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 32 N2 ? ? B A 23 B G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 32 N3 ? ? B A 23 B G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 31 N1 ? ? B U 25 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 31 N6 ? ? B U 25 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N4 ? ? ? 1_555 A A 30 N1 ? ? B C 26 B A 44 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog25 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 29 N3 ? ? B G 27 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 29 O2 ? ? B G 27 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 29 N4 ? ? B G 27 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? B G 29 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? B G 29 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? B G 29 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 26 N1 ? ? B U 30 B A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 26 N6 ? ? B U 30 B A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? B G 31 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? B G 31 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? B G 31 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 19 N1 ? ? ? 1_555 A A 52 N6 ? ? B A 33 B A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog40 hydrog ? ? A A 19 N6 ? ? ? 1_555 A A 52 N7 ? ? B A 33 B A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog41 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 23 N2 ? ? B U 34 B G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog42 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 51 N7 ? ? B U 34 B A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog43 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 51 N6 ? ? B U 34 B A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog44 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 50 N1 ? ? B A 35 B A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog45 hydrog ? ? A A 21 N7 ? ? ? 1_555 A A 50 N6 ? ? B A 35 B A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog46 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 47 N3 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 47 O2 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 47 N4 ? ? B G 37 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 46 N3 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 46 O2 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 46 N4 ? ? B G 38 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 52 N1 ? ? B G 38 B A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog53 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 52 N6 ? ? B G 38 B A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog54 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 39 N3 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 39 O2 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 39 N4 ? ? B G 46 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 33 N3 ? ? ? 1_555 A U 37 O4 ? ? B U 47 B U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog58 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 62 N3 ? ? B U 49 B A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog59 hydrog ? ? A C 36 N4 ? ? ? 1_555 A U 61 O2 ? ? B C 50 B U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog60 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 58 N1 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 58 O6 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 58 N2 ? ? B C 54 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? B G 55 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? B G 55 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? B G 55 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 56 N3 ? ? B G 56 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 56 O2 ? ? B G 56 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 56 N4 ? ? B G 56 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 55 O2 ? ? B G 57 B U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog70 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 55 N3 ? ? B G 57 B U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog71 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 54 N1 ? ? B C 58 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 54 O6 ? ? B C 58 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 54 N2 ? ? B C 58 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 53 N3 ? ? B A 59 B U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 53 O4 ? ? B A 59 B U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 47 O2 ? ? ? 1_555 A A 51 N6 ? ? B C 61 B A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NCO 101 ? 10 'binding site for residue NCO B 101' AC2 Software B NCO 102 ? 12 'binding site for residue NCO B 102' AC3 Software B NCO 103 ? 9 'binding site for residue NCO B 103' AC4 Software B NCO 104 ? 9 'binding site for residue NCO B 104' AC5 Software B NCO 105 ? 7 'binding site for residue NCO B 105' AC6 Software B NCO 106 ? 4 'binding site for residue NCO B 106' AC7 Software B NCO 107 ? 3 'binding site for residue NCO B 107' AC8 Software B ACT 108 ? 7 'binding site for residue ACT B 108' AC9 Software B CMG 109 ? 12 'binding site for residue CMG B 109' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 C A 25 ? C B 39 . ? 1_555 ? 2 AC1 10 G A 41 ? G B 55 . ? 1_555 ? 3 AC1 10 G A 42 ? G B 56 . ? 1_555 ? 4 AC1 10 G A 43 ? G B 57 . ? 1_555 ? 5 AC1 10 G A 54 ? G B 68 . ? 1_555 ? 6 AC1 10 U A 55 ? U B 69 . ? 1_555 ? 7 AC1 10 HOH K . ? HOH B 215 . ? 1_555 ? 8 AC1 10 HOH K . ? HOH B 217 . ? 1_555 ? 9 AC1 10 HOH K . ? HOH B 242 . ? 1_555 ? 10 AC1 10 HOH K . ? HOH B 361 . ? 1_555 ? 11 AC2 12 G A 15 ? G B 29 . ? 4_545 ? 12 AC2 12 U A 16 ? U B 30 . ? 4_545 ? 13 AC2 12 A A 52 ? A B 66 . ? 1_555 ? 14 AC2 12 U A 53 ? U B 67 . ? 1_555 ? 15 AC2 12 HOH K . ? HOH B 214 . ? 1_555 ? 16 AC2 12 HOH K . ? HOH B 279 . ? 1_555 ? 17 AC2 12 HOH K . ? HOH B 312 . ? 4_555 ? 18 AC2 12 HOH K . ? HOH B 317 . ? 1_555 ? 19 AC2 12 HOH K . ? HOH B 336 . ? 1_555 ? 20 AC2 12 HOH K . ? HOH B 337 . ? 4_555 ? 21 AC2 12 HOH K . ? HOH B 342 . ? 1_555 ? 22 AC2 12 HOH K . ? HOH B 350 . ? 1_555 ? 23 AC3 9 G A 24 ? G B 38 . ? 1_555 ? 24 AC3 9 C A 25 ? C B 39 . ? 1_555 ? 25 AC3 9 G A 42 ? G B 56 . ? 1_555 ? 26 AC3 9 G A 43 ? G B 57 . ? 4_556 ? 27 AC3 9 C A 44 ? C B 58 . ? 4_556 ? 28 AC3 9 HOH K . ? HOH B 220 . ? 1_555 ? 29 AC3 9 HOH K . ? HOH B 276 . ? 1_555 ? 30 AC3 9 HOH K . ? HOH B 311 . ? 1_555 ? 31 AC3 9 HOH K . ? HOH B 315 . ? 1_555 ? 32 AC4 9 U A 16 ? U B 30 . ? 1_555 ? 33 AC4 9 G A 17 ? G B 31 . ? 1_555 ? 34 AC4 9 G A 18 ? G B 32 . ? 1_555 ? 35 AC4 9 A A 51 ? A B 65 . ? 1_555 ? 36 AC4 9 A A 52 ? A B 66 . ? 1_555 ? 37 AC4 9 HOH K . ? HOH B 250 . ? 1_555 ? 38 AC4 9 HOH K . ? HOH B 255 . ? 1_555 ? 39 AC4 9 HOH K . ? HOH B 297 . ? 1_555 ? 40 AC4 9 HOH K . ? HOH B 299 . ? 1_555 ? 41 AC5 7 C A 27 ? C B 41 . ? 1_555 ? 42 AC5 7 G A 28 ? G B 42 . ? 1_555 ? 43 AC5 7 C A 39 ? C B 53 . ? 1_555 ? 44 AC5 7 C A 40 ? C B 54 . ? 1_555 ? 45 AC5 7 HOH K . ? HOH B 222 . ? 1_555 ? 46 AC5 7 HOH K . ? HOH B 322 . ? 1_555 ? 47 AC5 7 HOH K . ? HOH B 352 . ? 1_555 ? 48 AC6 4 G A 32 ? G B 46 . ? 1_555 ? 49 AC6 4 U A 33 ? U B 47 . ? 1_555 ? 50 AC6 4 HOH K . ? HOH B 233 . ? 1_555 ? 51 AC6 4 HOH K . ? HOH B 335 . ? 1_555 ? 52 AC7 3 A A 10 ? A B 24 . ? 1_555 ? 53 AC7 3 C A 57 ? C B 71 . ? 1_555 ? 54 AC7 3 HOH K . ? HOH B 288 . ? 1_555 ? 55 AC8 7 G A 18 ? G B 32 . ? 1_555 ? 56 AC8 7 A A 19 ? A B 33 . ? 1_555 ? 57 AC8 7 G A 24 ? G B 38 . ? 1_555 ? 58 AC8 7 C A 25 ? C B 39 . ? 1_555 ? 59 AC8 7 A A 52 ? A B 66 . ? 1_555 ? 60 AC8 7 U A 53 ? U B 67 . ? 1_555 ? 61 AC8 7 HOH K . ? HOH B 299 . ? 1_555 ? 62 AC9 12 A A 7 ? A B 21 . ? 1_555 ? 63 AC9 12 U A 8 ? U B 22 . ? 1_555 ? 64 AC9 12 A A 9 ? A B 23 . ? 1_555 ? 65 AC9 12 A A 10 ? A B 24 . ? 1_555 ? 66 AC9 12 U A 33 ? U B 47 . ? 1_555 ? 67 AC9 12 U A 37 ? U B 51 . ? 1_555 ? 68 AC9 12 A A 38 ? A B 52 . ? 1_555 ? 69 AC9 12 A A 59 ? A B 73 . ? 1_555 ? 70 AC9 12 C A 60 ? C B 74 . ? 1_555 ? 71 AC9 12 U A 61 ? U B 75 . ? 1_555 ? 72 AC9 12 HOH K . ? HOH B 232 . ? 1_555 ? 73 AC9 12 HOH K . ? HOH B 323 . ? 1_555 ? # _database_PDB_matrix.entry_id 6UC9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 6UC9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.007492 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000203 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028433 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023881 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 15 15 G G B . n A 1 2 G 2 16 16 G G B . n A 1 3 A 3 17 17 A A B . n A 1 4 C 4 18 18 C C B . n A 1 5 A 5 19 19 A A B . n A 1 6 U 6 20 20 U U B . n A 1 7 A 7 21 21 A A B . n A 1 8 U 8 22 22 U U B . n A 1 9 A 9 23 23 A A B . n A 1 10 A 10 24 24 A A B . n A 1 11 U 11 25 25 U U B . n A 1 12 C 12 26 26 C C B . n A 1 13 G 13 27 27 G G B . n A 1 14 C 14 28 28 C C B . n A 1 15 G 15 29 29 G G B . n A 1 16 U 16 30 30 U U B . n A 1 17 G 17 31 31 G G B . n A 1 18 G 18 32 32 G G B . n A 1 19 A 19 33 33 A A B . n A 1 20 U 20 34 34 U U B . n A 1 21 A 21 35 35 A A B . n A 1 22 U 22 36 36 U U B . n A 1 23 G 23 37 37 G G B . n A 1 24 G 24 38 38 G G B . n A 1 25 C 25 39 39 C C B . n A 1 26 A 26 40 40 A A B . n A 1 27 C 27 41 41 C C B . n A 1 28 G 28 42 42 G G B . n A 1 29 C 29 43 43 C C B . n A 1 30 A 30 44 44 A A B . n A 1 31 A 31 45 45 A A B . n A 1 32 G 32 46 46 G G B . n A 1 33 U 33 47 47 U U B . n A 1 34 U 34 48 48 U U B . n A 1 35 U 35 49 49 U U B . n A 1 36 C 36 50 50 C C B . n A 1 37 U 37 51 51 U U B . n A 1 38 A 38 52 52 A A B . n A 1 39 C 39 53 53 C C B . n A 1 40 C 40 54 54 C C B . n A 1 41 G 41 55 55 G G B . n A 1 42 G 42 56 56 G G B . n A 1 43 G 43 57 57 G G B . n A 1 44 C 44 58 58 C C B . n A 1 45 A 45 59 59 A A B . n A 1 46 C 46 60 60 C C B . n A 1 47 C 47 61 61 C C B . n A 1 48 G 48 62 62 G G B . n A 1 49 U 49 63 63 U U B . n A 1 50 A 50 64 64 A A B . n A 1 51 A 51 65 65 A A B . n A 1 52 A 52 66 66 A A B . n A 1 53 U 53 67 67 U U B . n A 1 54 G 54 68 68 G G B . n A 1 55 U 55 69 69 U U B . n A 1 56 C 56 70 70 C C B . n A 1 57 C 57 71 71 C C B . n A 1 58 G 58 72 72 G G B . n A 1 59 A 59 73 73 A A B . n A 1 60 C 60 74 74 C C B . n A 1 61 U 61 75 75 U U B . n A 1 62 A 62 76 76 A A B . n A 1 63 U 63 77 77 U U B . n A 1 64 G 64 78 78 G G B . n A 1 65 U 65 79 79 U U B . n A 1 66 C 66 80 80 C C B . n A 1 67 C 67 81 81 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NCO 1 101 1 NCO NCO B . C 2 NCO 1 102 2 NCO NCO B . D 2 NCO 1 103 3 NCO NCO B . E 2 NCO 1 104 5 NCO NCO B . F 2 NCO 1 105 6 NCO NCO B . G 2 NCO 1 106 7 NCO NCO B . H 2 NCO 1 107 8 NCO NCO B . I 3 ACT 1 108 1 ACT ACT B . J 4 CMG 1 109 1 CMG LIG B . K 5 HOH 1 201 130 HOH HOH B . K 5 HOH 2 202 147 HOH HOH B . K 5 HOH 3 203 186 HOH HOH B . K 5 HOH 4 204 87 HOH HOH B . K 5 HOH 5 205 188 HOH HOH B . K 5 HOH 6 206 181 HOH HOH B . K 5 HOH 7 207 56 HOH HOH B . K 5 HOH 8 208 57 HOH HOH B . K 5 HOH 9 209 22 HOH HOH B . K 5 HOH 10 210 138 HOH HOH B . K 5 HOH 11 211 106 HOH HOH B . K 5 HOH 12 212 110 HOH HOH B . K 5 HOH 13 213 196 HOH HOH B . K 5 HOH 14 214 121 HOH HOH B . K 5 HOH 15 215 111 HOH HOH B . K 5 HOH 16 216 77 HOH HOH B . K 5 HOH 17 217 31 HOH HOH B . K 5 HOH 18 218 61 HOH HOH B . K 5 HOH 19 219 170 HOH HOH B . K 5 HOH 20 220 85 HOH HOH B . K 5 HOH 21 221 101 HOH HOH B . K 5 HOH 22 222 166 HOH HOH B . K 5 HOH 23 223 23 HOH HOH B . K 5 HOH 24 224 71 HOH HOH B . K 5 HOH 25 225 109 HOH HOH B . K 5 HOH 26 226 107 HOH HOH B . K 5 HOH 27 227 62 HOH HOH B . K 5 HOH 28 228 36 HOH HOH B . K 5 HOH 29 229 47 HOH HOH B . K 5 HOH 30 230 84 HOH HOH B . K 5 HOH 31 231 78 HOH HOH B . K 5 HOH 32 232 14 HOH HOH B . K 5 HOH 33 233 178 HOH HOH B . K 5 HOH 34 234 10 HOH HOH B . K 5 HOH 35 235 115 HOH HOH B . K 5 HOH 36 236 29 HOH HOH B . K 5 HOH 37 237 102 HOH HOH B . K 5 HOH 38 238 182 HOH HOH B . K 5 HOH 39 239 83 HOH HOH B . K 5 HOH 40 240 73 HOH HOH B . K 5 HOH 41 241 48 HOH HOH B . K 5 HOH 42 242 100 HOH HOH B . K 5 HOH 43 243 137 HOH HOH B . K 5 HOH 44 244 75 HOH HOH B . K 5 HOH 45 245 59 HOH HOH B . K 5 HOH 46 246 64 HOH HOH B . K 5 HOH 47 247 50 HOH HOH B . K 5 HOH 48 248 89 HOH HOH B . K 5 HOH 49 249 12 HOH HOH B . K 5 HOH 50 250 27 HOH HOH B . K 5 HOH 51 251 185 HOH HOH B . K 5 HOH 52 252 49 HOH HOH B . K 5 HOH 53 253 8 HOH HOH B . K 5 HOH 54 254 30 HOH HOH B . K 5 HOH 55 255 1 HOH HOH B . K 5 HOH 56 256 21 HOH HOH B . K 5 HOH 57 257 52 HOH HOH B . K 5 HOH 58 258 183 HOH HOH B . K 5 HOH 59 259 32 HOH HOH B . K 5 HOH 60 260 98 HOH HOH B . K 5 HOH 61 261 53 HOH HOH B . K 5 HOH 62 262 33 HOH HOH B . K 5 HOH 63 263 43 HOH HOH B . K 5 HOH 64 264 114 HOH HOH B . K 5 HOH 65 265 155 HOH HOH B . K 5 HOH 66 266 11 HOH HOH B . K 5 HOH 67 267 44 HOH HOH B . K 5 HOH 68 268 80 HOH HOH B . K 5 HOH 69 269 66 HOH HOH B . K 5 HOH 70 270 133 HOH HOH B . K 5 HOH 71 271 25 HOH HOH B . K 5 HOH 72 272 6 HOH HOH B . K 5 HOH 73 273 142 HOH HOH B . K 5 HOH 74 274 81 HOH HOH B . K 5 HOH 75 275 179 HOH HOH B . K 5 HOH 76 276 54 HOH HOH B . K 5 HOH 77 277 141 HOH HOH B . K 5 HOH 78 278 37 HOH HOH B . K 5 HOH 79 279 19 HOH HOH B . K 5 HOH 80 280 68 HOH HOH B . K 5 HOH 81 281 65 HOH HOH B . K 5 HOH 82 282 134 HOH HOH B . K 5 HOH 83 283 2 HOH HOH B . K 5 HOH 84 284 91 HOH HOH B . K 5 HOH 85 285 5 HOH HOH B . K 5 HOH 86 286 86 HOH HOH B . K 5 HOH 87 287 139 HOH HOH B . K 5 HOH 88 288 174 HOH HOH B . K 5 HOH 89 289 112 HOH HOH B . K 5 HOH 90 290 4 HOH HOH B . K 5 HOH 91 291 108 HOH HOH B . K 5 HOH 92 292 93 HOH HOH B . K 5 HOH 93 293 149 HOH HOH B . K 5 HOH 94 294 70 HOH HOH B . K 5 HOH 95 295 119 HOH HOH B . K 5 HOH 96 296 145 HOH HOH B . K 5 HOH 97 297 18 HOH HOH B . K 5 HOH 98 298 72 HOH HOH B . K 5 HOH 99 299 40 HOH HOH B . K 5 HOH 100 300 96 HOH HOH B . K 5 HOH 101 301 163 HOH HOH B . K 5 HOH 102 302 41 HOH HOH B . K 5 HOH 103 303 143 HOH HOH B . K 5 HOH 104 304 74 HOH HOH B . K 5 HOH 105 305 156 HOH HOH B . K 5 HOH 106 306 42 HOH HOH B . K 5 HOH 107 307 28 HOH HOH B . K 5 HOH 108 308 92 HOH HOH B . K 5 HOH 109 309 113 HOH HOH B . K 5 HOH 110 310 16 HOH HOH B . K 5 HOH 111 311 7 HOH HOH B . K 5 HOH 112 312 60 HOH HOH B . K 5 HOH 113 313 123 HOH HOH B . K 5 HOH 114 314 67 HOH HOH B . K 5 HOH 115 315 51 HOH HOH B . K 5 HOH 116 316 3 HOH HOH B . K 5 HOH 117 317 146 HOH HOH B . K 5 HOH 118 318 26 HOH HOH B . K 5 HOH 119 319 159 HOH HOH B . K 5 HOH 120 320 122 HOH HOH B . K 5 HOH 121 321 34 HOH HOH B . K 5 HOH 122 322 187 HOH HOH B . K 5 HOH 123 323 131 HOH HOH B . K 5 HOH 124 324 105 HOH HOH B . K 5 HOH 125 325 151 HOH HOH B . K 5 HOH 126 326 82 HOH HOH B . K 5 HOH 127 327 136 HOH HOH B . K 5 HOH 128 328 118 HOH HOH B . K 5 HOH 129 329 171 HOH HOH B . K 5 HOH 130 330 189 HOH HOH B . K 5 HOH 131 331 45 HOH HOH B . K 5 HOH 132 332 126 HOH HOH B . K 5 HOH 133 333 176 HOH HOH B . K 5 HOH 134 334 63 HOH HOH B . K 5 HOH 135 335 195 HOH HOH B . K 5 HOH 136 336 15 HOH HOH B . K 5 HOH 137 337 46 HOH HOH B . K 5 HOH 138 338 38 HOH HOH B . K 5 HOH 139 339 158 HOH HOH B . K 5 HOH 140 340 150 HOH HOH B . K 5 HOH 141 341 173 HOH HOH B . K 5 HOH 142 342 58 HOH HOH B . K 5 HOH 143 343 90 HOH HOH B . K 5 HOH 144 344 13 HOH HOH B . K 5 HOH 145 345 24 HOH HOH B . K 5 HOH 146 346 104 HOH HOH B . K 5 HOH 147 347 35 HOH HOH B . K 5 HOH 148 348 148 HOH HOH B . K 5 HOH 149 349 55 HOH HOH B . K 5 HOH 150 350 169 HOH HOH B . K 5 HOH 151 351 120 HOH HOH B . K 5 HOH 152 352 161 HOH HOH B . K 5 HOH 153 353 154 HOH HOH B . K 5 HOH 154 354 20 HOH HOH B . K 5 HOH 155 355 128 HOH HOH B . K 5 HOH 156 356 103 HOH HOH B . K 5 HOH 157 357 160 HOH HOH B . K 5 HOH 158 358 116 HOH HOH B . K 5 HOH 159 359 180 HOH HOH B . K 5 HOH 160 360 97 HOH HOH B . K 5 HOH 161 361 194 HOH HOH B . K 5 HOH 162 362 39 HOH HOH B . K 5 HOH 163 363 76 HOH HOH B . K 5 HOH 164 364 165 HOH HOH B . K 5 HOH 165 365 140 HOH HOH B . K 5 HOH 166 366 168 HOH HOH B . K 5 HOH 167 367 152 HOH HOH B . K 5 HOH 168 368 88 HOH HOH B . K 5 HOH 169 369 162 HOH HOH B . K 5 HOH 170 370 99 HOH HOH B . K 5 HOH 171 371 95 HOH HOH B . K 5 HOH 172 372 192 HOH HOH B . K 5 HOH 173 373 125 HOH HOH B . K 5 HOH 174 374 9 HOH HOH B . K 5 HOH 175 375 124 HOH HOH B . K 5 HOH 176 376 144 HOH HOH B . K 5 HOH 177 377 190 HOH HOH B . K 5 HOH 178 378 127 HOH HOH B . K 5 HOH 179 379 197 HOH HOH B . K 5 HOH 180 380 175 HOH HOH B . K 5 HOH 181 381 135 HOH HOH B . K 5 HOH 182 382 132 HOH HOH B . K 5 HOH 183 383 167 HOH HOH B . K 5 HOH 184 384 153 HOH HOH B . K 5 HOH 185 385 157 HOH HOH B . K 5 HOH 186 386 94 HOH HOH B . K 5 HOH 187 387 193 HOH HOH B . K 5 HOH 188 388 79 HOH HOH B . K 5 HOH 189 389 177 HOH HOH B . K 5 HOH 190 390 129 HOH HOH B . K 5 HOH 191 391 184 HOH HOH B . K 5 HOH 192 392 69 HOH HOH B . K 5 HOH 193 393 117 HOH HOH B . K 5 HOH 194 394 164 HOH HOH B . K 5 HOH 195 395 17 HOH HOH B . K 5 HOH 196 396 172 HOH HOH B . K 5 HOH 197 397 191 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-22 2 'Structure model' 1 1 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14-3260 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 6UC9 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 351 ? ? O B HOH 356 ? ? 1.93 2 1 OP2 B G 27 ? ? O B HOH 201 ? ? 2.07 3 1 "O3'" B C 81 ? ? O B HOH 202 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 274 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 301 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_556 _pdbx_validate_symm_contact.dist 1.93 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ACT C C N N 38 ACT O O N N 39 ACT OXT O N N 40 ACT CH3 C N N 41 ACT H1 H N N 42 ACT H2 H N N 43 ACT H3 H N N 44 C OP3 O N N 45 C P P N N 46 C OP1 O N N 47 C OP2 O N N 48 C "O5'" O N N 49 C "C5'" C N N 50 C "C4'" C N R 51 C "O4'" O N N 52 C "C3'" C N S 53 C "O3'" O N N 54 C "C2'" C N R 55 C "O2'" O N N 56 C "C1'" C N R 57 C N1 N N N 58 C C2 C N N 59 C O2 O N N 60 C N3 N N N 61 C C4 C N N 62 C N4 N N N 63 C C5 C N N 64 C C6 C N N 65 C HOP3 H N N 66 C HOP2 H N N 67 C "H5'" H N N 68 C "H5''" H N N 69 C "H4'" H N N 70 C "H3'" H N N 71 C "HO3'" H N N 72 C "H2'" H N N 73 C "HO2'" H N N 74 C "H1'" H N N 75 C H41 H N N 76 C H42 H N N 77 C H5 H N N 78 C H6 H N N 79 CMG N1 N Y N 80 CMG C2 C Y N 81 CMG N3 N Y N 82 CMG C4 C Y N 83 CMG C5 C Y N 84 CMG C6 C Y N 85 CMG O6 O N N 86 CMG C9 C N N 87 CMG N7 N Y N 88 CMG C8 C Y N 89 CMG N9 N Y N 90 CMG N2 N N N 91 CMG C10 C N N 92 CMG C11 C N N 93 CMG C12 C N N 94 CMG C13 C N N 95 CMG C14 C N N 96 CMG C15 C N N 97 CMG H92 H N N 98 CMG H91 H N N 99 CMG H8 H N N 100 CMG H9 H N N 101 CMG H22 H N N 102 CMG H21 H N N 103 CMG H10 H N N 104 CMG H112 H N N 105 CMG H111 H N N 106 CMG H122 H N N 107 CMG H121 H N N 108 CMG H132 H N N 109 CMG H131 H N N 110 CMG H142 H N N 111 CMG H141 H N N 112 CMG H152 H N N 113 CMG H151 H N N 114 G OP3 O N N 115 G P P N N 116 G OP1 O N N 117 G OP2 O N N 118 G "O5'" O N N 119 G "C5'" C N N 120 G "C4'" C N R 121 G "O4'" O N N 122 G "C3'" C N S 123 G "O3'" O N N 124 G "C2'" C N R 125 G "O2'" O N N 126 G "C1'" C N R 127 G N9 N Y N 128 G C8 C Y N 129 G N7 N Y N 130 G C5 C Y N 131 G C6 C N N 132 G O6 O N N 133 G N1 N N N 134 G C2 C N N 135 G N2 N N N 136 G N3 N N N 137 G C4 C Y N 138 G HOP3 H N N 139 G HOP2 H N N 140 G "H5'" H N N 141 G "H5''" H N N 142 G "H4'" H N N 143 G "H3'" H N N 144 G "HO3'" H N N 145 G "H2'" H N N 146 G "HO2'" H N N 147 G "H1'" H N N 148 G H8 H N N 149 G H1 H N N 150 G H21 H N N 151 G H22 H N N 152 HOH O O N N 153 HOH H1 H N N 154 HOH H2 H N N 155 NCO CO CO N N 156 NCO N1 N N N 157 NCO N2 N N N 158 NCO N3 N N N 159 NCO N4 N N N 160 NCO N5 N N N 161 NCO N6 N N N 162 NCO HN11 H N N 163 NCO HN12 H N N 164 NCO HN13 H N N 165 NCO HN21 H N N 166 NCO HN22 H N N 167 NCO HN23 H N N 168 NCO HN31 H N N 169 NCO HN32 H N N 170 NCO HN33 H N N 171 NCO HN41 H N N 172 NCO HN42 H N N 173 NCO HN43 H N N 174 NCO HN51 H N N 175 NCO HN52 H N N 176 NCO HN53 H N N 177 NCO HN61 H N N 178 NCO HN62 H N N 179 NCO HN63 H N N 180 U OP3 O N N 181 U P P N N 182 U OP1 O N N 183 U OP2 O N N 184 U "O5'" O N N 185 U "C5'" C N N 186 U "C4'" C N R 187 U "O4'" O N N 188 U "C3'" C N S 189 U "O3'" O N N 190 U "C2'" C N R 191 U "O2'" O N N 192 U "C1'" C N R 193 U N1 N N N 194 U C2 C N N 195 U O2 O N N 196 U N3 N N N 197 U C4 C N N 198 U O4 O N N 199 U C5 C N N 200 U C6 C N N 201 U HOP3 H N N 202 U HOP2 H N N 203 U "H5'" H N N 204 U "H5''" H N N 205 U "H4'" H N N 206 U "H3'" H N N 207 U "HO3'" H N N 208 U "H2'" H N N 209 U "HO2'" H N N 210 U "H1'" H N N 211 U H3 H N N 212 U H5 H N N 213 U H6 H N N 214 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ACT C O doub N N 40 ACT C OXT sing N N 41 ACT C CH3 sing N N 42 ACT CH3 H1 sing N N 43 ACT CH3 H2 sing N N 44 ACT CH3 H3 sing N N 45 C OP3 P sing N N 46 C OP3 HOP3 sing N N 47 C P OP1 doub N N 48 C P OP2 sing N N 49 C P "O5'" sing N N 50 C OP2 HOP2 sing N N 51 C "O5'" "C5'" sing N N 52 C "C5'" "C4'" sing N N 53 C "C5'" "H5'" sing N N 54 C "C5'" "H5''" sing N N 55 C "C4'" "O4'" sing N N 56 C "C4'" "C3'" sing N N 57 C "C4'" "H4'" sing N N 58 C "O4'" "C1'" sing N N 59 C "C3'" "O3'" sing N N 60 C "C3'" "C2'" sing N N 61 C "C3'" "H3'" sing N N 62 C "O3'" "HO3'" sing N N 63 C "C2'" "O2'" sing N N 64 C "C2'" "C1'" sing N N 65 C "C2'" "H2'" sing N N 66 C "O2'" "HO2'" sing N N 67 C "C1'" N1 sing N N 68 C "C1'" "H1'" sing N N 69 C N1 C2 sing N N 70 C N1 C6 sing N N 71 C C2 O2 doub N N 72 C C2 N3 sing N N 73 C N3 C4 doub N N 74 C C4 N4 sing N N 75 C C4 C5 sing N N 76 C N4 H41 sing N N 77 C N4 H42 sing N N 78 C C5 C6 doub N N 79 C C5 H5 sing N N 80 C C6 H6 sing N N 81 CMG N1 C2 doub Y N 82 CMG N1 C6 sing Y N 83 CMG C2 N3 sing Y N 84 CMG C2 N2 sing N N 85 CMG N3 C4 doub Y N 86 CMG C4 C5 sing Y N 87 CMG C4 N9 sing Y N 88 CMG C5 C6 doub Y N 89 CMG C5 N7 sing Y N 90 CMG C6 O6 sing N N 91 CMG O6 C9 sing N N 92 CMG C9 C10 sing N N 93 CMG C9 H92 sing N N 94 CMG C9 H91 sing N N 95 CMG N7 C8 doub Y N 96 CMG C8 N9 sing Y N 97 CMG C8 H8 sing N N 98 CMG N9 H9 sing N N 99 CMG N2 H22 sing N N 100 CMG N2 H21 sing N N 101 CMG C10 C11 sing N N 102 CMG C10 C15 sing N N 103 CMG C10 H10 sing N N 104 CMG C11 C12 sing N N 105 CMG C11 H112 sing N N 106 CMG C11 H111 sing N N 107 CMG C12 C13 sing N N 108 CMG C12 H122 sing N N 109 CMG C12 H121 sing N N 110 CMG C13 C14 sing N N 111 CMG C13 H132 sing N N 112 CMG C13 H131 sing N N 113 CMG C14 C15 sing N N 114 CMG C14 H142 sing N N 115 CMG C14 H141 sing N N 116 CMG C15 H152 sing N N 117 CMG C15 H151 sing N N 118 G OP3 P sing N N 119 G OP3 HOP3 sing N N 120 G P OP1 doub N N 121 G P OP2 sing N N 122 G P "O5'" sing N N 123 G OP2 HOP2 sing N N 124 G "O5'" "C5'" sing N N 125 G "C5'" "C4'" sing N N 126 G "C5'" "H5'" sing N N 127 G "C5'" "H5''" sing N N 128 G "C4'" "O4'" sing N N 129 G "C4'" "C3'" sing N N 130 G "C4'" "H4'" sing N N 131 G "O4'" "C1'" sing N N 132 G "C3'" "O3'" sing N N 133 G "C3'" "C2'" sing N N 134 G "C3'" "H3'" sing N N 135 G "O3'" "HO3'" sing N N 136 G "C2'" "O2'" sing N N 137 G "C2'" "C1'" sing N N 138 G "C2'" "H2'" sing N N 139 G "O2'" "HO2'" sing N N 140 G "C1'" N9 sing N N 141 G "C1'" "H1'" sing N N 142 G N9 C8 sing Y N 143 G N9 C4 sing Y N 144 G C8 N7 doub Y N 145 G C8 H8 sing N N 146 G N7 C5 sing Y N 147 G C5 C6 sing N N 148 G C5 C4 doub Y N 149 G C6 O6 doub N N 150 G C6 N1 sing N N 151 G N1 C2 sing N N 152 G N1 H1 sing N N 153 G C2 N2 sing N N 154 G C2 N3 doub N N 155 G N2 H21 sing N N 156 G N2 H22 sing N N 157 G N3 C4 sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 NCO CO N1 sing N N 161 NCO CO N2 sing N N 162 NCO CO N3 sing N N 163 NCO CO N4 sing N N 164 NCO CO N5 sing N N 165 NCO CO N6 sing N N 166 NCO N1 HN11 sing N N 167 NCO N1 HN12 sing N N 168 NCO N1 HN13 sing N N 169 NCO N2 HN21 sing N N 170 NCO N2 HN22 sing N N 171 NCO N2 HN23 sing N N 172 NCO N3 HN31 sing N N 173 NCO N3 HN32 sing N N 174 NCO N3 HN33 sing N N 175 NCO N4 HN41 sing N N 176 NCO N4 HN42 sing N N 177 NCO N4 HN43 sing N N 178 NCO N5 HN51 sing N N 179 NCO N5 HN52 sing N N 180 NCO N5 HN53 sing N N 181 NCO N6 HN61 sing N N 182 NCO N6 HN62 sing N N 183 NCO N6 HN63 sing N N 184 U OP3 P sing N N 185 U OP3 HOP3 sing N N 186 U P OP1 doub N N 187 U P OP2 sing N N 188 U P "O5'" sing N N 189 U OP2 HOP2 sing N N 190 U "O5'" "C5'" sing N N 191 U "C5'" "C4'" sing N N 192 U "C5'" "H5'" sing N N 193 U "C5'" "H5''" sing N N 194 U "C4'" "O4'" sing N N 195 U "C4'" "C3'" sing N N 196 U "C4'" "H4'" sing N N 197 U "O4'" "C1'" sing N N 198 U "C3'" "O3'" sing N N 199 U "C3'" "C2'" sing N N 200 U "C3'" "H3'" sing N N 201 U "O3'" "HO3'" sing N N 202 U "C2'" "O2'" sing N N 203 U "C2'" "C1'" sing N N 204 U "C2'" "H2'" sing N N 205 U "O2'" "HO2'" sing N N 206 U "C1'" N1 sing N N 207 U "C1'" "H1'" sing N N 208 U N1 C2 sing N N 209 U N1 C6 sing N N 210 U C2 O2 doub N N 211 U C2 N3 sing N N 212 U N3 C4 sing N N 213 U N3 H3 sing N N 214 U C4 O4 doub N N 215 U C4 C5 sing N N 216 U C5 C6 doub N N 217 U C5 H5 sing N N 218 U C6 H6 sing N N 219 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6UC9 'double helix' 6UC9 'a-form double helix' 6UC9 'mismatched base pair' 6UC9 'internal loop' 6UC9 'triple helix' 6UC9 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 67 1_555 -0.019 -0.264 -0.299 -10.805 -7.657 -8.140 1 B_G15:C81_B B 15 ? B 81 ? 19 1 1 A G 2 1_555 A C 66 1_555 -0.086 -0.168 -0.272 -4.334 -15.261 -0.586 2 B_G16:C80_B B 16 ? B 80 ? 19 1 1 A A 3 1_555 A U 65 1_555 0.197 -0.195 0.012 -0.948 -18.798 1.559 3 B_A17:U79_B B 17 ? B 79 ? 20 1 1 A C 4 1_555 A G 64 1_555 -0.340 -0.187 0.020 3.451 -16.163 3.750 4 B_C18:G78_B B 18 ? B 78 ? 19 1 1 A A 5 1_555 A U 63 1_555 0.054 -0.085 0.013 -7.410 -9.828 6.105 5 B_A19:U77_B B 19 ? B 77 ? 20 1 1 A U 6 1_555 A A 62 1_555 0.221 -0.141 0.035 -9.184 -17.729 6.093 6 B_U20:A76_B B 20 ? B 76 ? 20 1 1 A A 7 1_555 A U 61 1_555 0.008 -0.050 -0.003 1.664 -9.156 -0.735 7 B_A21:U75_B B 21 ? B 75 ? 20 1 1 A U 33 1_555 A U 37 1_555 3.513 -0.624 0.672 30.229 41.437 -69.852 8 B_U47:U51_B B 47 ? B 51 ? ? ? 1 A U 8 1_555 A A 38 1_555 0.075 -0.165 -0.338 14.917 -3.912 2.513 9 B_U22:A52_B B 22 ? B 52 ? 20 1 1 A G 32 1_555 A C 39 1_555 -0.053 -0.120 -0.306 -16.235 1.252 -1.947 10 B_G46:C53_B B 46 ? B 53 ? 19 1 1 A A 31 1_555 A U 11 1_555 0.150 -0.043 0.190 -7.880 -9.973 4.790 11 B_A45:U25_B B 45 ? B 25 ? 20 1 1 A A 30 1_555 A C 12 1_555 1.264 0.107 -0.129 -6.143 -10.459 8.923 12 B_A44:C26_B B 44 ? B 26 ? ? 1 1 A C 29 1_555 A G 13 1_555 0.356 -0.057 0.173 7.466 -4.410 1.194 13 B_C43:G27_B B 43 ? B 27 ? 19 1 1 A G 28 1_555 A C 14 1_555 -0.209 -0.127 -0.055 -4.663 -6.099 -0.256 14 B_G42:C28_B B 42 ? B 28 ? 19 1 1 A C 27 1_555 A G 15 1_555 0.289 -0.172 0.085 -2.721 -13.077 -0.429 15 B_C41:G29_B B 41 ? B 29 ? 19 1 1 A A 26 1_555 A U 16 1_555 -0.040 -0.208 -0.041 -3.560 -5.389 3.475 16 B_A40:U30_B B 40 ? B 30 ? 20 1 1 A C 25 1_555 A G 17 1_555 0.328 -0.182 0.122 -5.470 -6.586 1.518 17 B_C39:G31_B B 39 ? B 31 ? 19 1 1 A A 19 1_555 A A 52 1_555 4.013 1.578 -0.160 -10.698 -5.004 -110.509 18 B_A33:A66_B B 33 ? B 66 ? 5 4 1 A U 20 1_555 A A 51 1_555 4.202 -2.018 -0.677 -1.932 -7.995 -100.009 19 B_U34:A65_B B 34 ? B 65 ? 24 4 1 A A 21 1_555 A A 50 1_555 -4.238 1.391 0.277 -0.696 2.679 -111.009 20 B_A35:A64_B B 35 ? B 64 ? 5 4 1 A C 47 1_555 A G 23 1_555 0.138 -0.229 0.708 -4.800 -8.167 -3.349 21 B_C61:G37_B B 61 ? B 37 ? 19 1 1 A G 24 1_555 A C 46 1_555 -0.059 -0.085 0.438 20.326 -10.513 -0.517 22 B_G38:C60_B B 38 ? B 60 ? 19 1 1 A U 53 1_555 A A 45 1_555 -0.080 -0.141 0.060 3.582 -10.534 1.342 23 B_U67:A59_B B 67 ? B 59 ? 20 1 1 A G 54 1_555 A C 44 1_555 -0.107 -0.284 0.009 -5.550 -14.823 -2.483 24 B_G68:C58_B B 68 ? B 58 ? 19 1 1 A U 55 1_555 A G 43 1_555 2.366 -0.642 0.014 -0.659 -13.661 -2.561 25 B_U69:G57_B B 69 ? B 57 ? 28 1 1 A C 56 1_555 A G 42 1_555 0.402 -0.169 0.170 -1.423 -10.209 -0.543 26 B_C70:G56_B B 70 ? B 56 ? 19 1 1 A C 57 1_555 A G 41 1_555 -0.056 -0.227 0.282 5.411 -8.638 -2.490 27 B_C71:G55_B B 71 ? B 55 ? 19 1 1 A G 58 1_555 A C 40 1_555 -0.128 -0.221 0.271 2.753 -17.228 1.714 28 B_G72:C54_B B 72 ? B 54 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 67 1_555 A G 2 1_555 A C 66 1_555 -0.231 -1.054 3.210 -5.926 6.098 31.799 -2.862 -0.563 2.956 10.889 10.581 32.888 1 BB_G15G16:C80C81_BB B 15 ? B 81 ? B 16 ? B 80 ? 1 A G 2 1_555 A C 66 1_555 A A 3 1_555 A U 65 1_555 0.108 -1.218 3.134 -1.469 9.242 34.820 -3.167 -0.364 2.726 15.109 2.401 36.018 2 BB_G16A17:U79C80_BB B 16 ? B 80 ? B 17 ? B 79 ? 1 A A 3 1_555 A U 65 1_555 A C 4 1_555 A G 64 1_555 0.913 -1.656 3.018 2.068 8.351 26.908 -5.066 -1.459 2.464 17.391 -4.306 28.225 3 BB_A17C18:G78U79_BB B 17 ? B 79 ? B 18 ? B 78 ? 1 A C 4 1_555 A G 64 1_555 A A 5 1_555 A U 63 1_555 -0.033 -1.320 3.416 0.280 10.753 34.208 -3.672 0.093 2.883 17.743 -0.462 35.811 4 BB_C18A19:U77G78_BB B 18 ? B 78 ? B 19 ? B 77 ? 1 A A 5 1_555 A U 63 1_555 A U 6 1_555 A A 62 1_555 0.075 -1.219 3.318 1.411 14.644 31.427 -4.166 0.078 2.520 25.368 -2.445 34.621 5 BB_A19U20:A76U77_BB B 19 ? B 77 ? B 20 ? B 76 ? 1 A U 6 1_555 A A 62 1_555 A A 7 1_555 A U 61 1_555 0.349 -1.513 2.905 3.138 18.967 26.987 -5.095 -0.212 1.564 35.490 -5.872 33.031 6 BB_U20A21:U75A76_BB B 20 ? B 76 ? B 21 ? B 75 ? 1 A A 7 1_555 A U 61 1_555 A U 33 1_555 A U 37 1_555 2.171 0.453 6.159 -25.605 -160.620 39.187 2.859 -1.516 1.344 -85.985 13.707 163.660 7 BB_A21U47:U51U75_BB B 21 ? B 75 ? B 47 ? B 51 ? 1 A U 33 1_555 A U 37 1_555 A U 8 1_555 A A 38 1_555 -0.035 0.936 -3.421 -0.771 -26.734 -2.111 -7.511 0.082 0.660 85.533 -2.465 -26.827 8 BB_U47U22:A52U51_BB B 47 ? B 51 ? B 22 ? B 52 ? 1 A U 8 1_555 A A 38 1_555 A G 32 1_555 A C 39 1_555 1.989 0.025 -2.601 -1.363 -10.858 -43.538 -0.809 2.705 -2.466 14.369 -1.803 -44.827 9 BB_U22G46:C53A52_BB B 22 ? B 52 ? B 46 ? B 53 ? 1 A G 32 1_555 A C 39 1_555 A A 31 1_555 A U 11 1_555 -2.127 0.471 -3.388 -14.540 -0.049 -51.361 -0.529 -1.333 -3.817 0.055 -16.404 -53.244 10 BB_G46A45:U25C53_BB B 46 ? B 53 ? B 45 ? B 25 ? 1 A A 31 1_555 A U 11 1_555 A A 30 1_555 A C 12 1_555 -0.268 2.234 -3.120 0.081 -4.306 -27.413 -5.596 -0.577 -2.742 9.015 0.169 -27.743 11 BB_A45A44:C26U25_BB B 45 ? B 25 ? B 44 ? B 26 ? 1 A A 30 1_555 A C 12 1_555 A C 29 1_555 A G 13 1_555 -0.469 1.969 -3.492 -3.670 -13.042 -33.648 -4.948 -0.254 -2.610 21.479 -6.045 -36.200 12 BB_A44C43:G27C26_BB B 44 ? B 26 ? B 43 ? B 27 ? 1 A C 29 1_555 A G 13 1_555 A G 28 1_555 A C 14 1_555 0.728 2.462 -3.004 4.013 -3.720 -27.800 -5.794 0.666 -2.733 7.648 8.250 -28.323 13 BB_C43G42:C28G27_BB B 43 ? B 27 ? B 42 ? B 28 ? 1 A G 28 1_555 A C 14 1_555 A C 27 1_555 A G 15 1_555 -0.689 1.930 -3.167 -1.046 -7.705 -27.425 -5.497 -1.186 -2.564 15.851 -2.152 -28.485 14 BB_G42C41:G29C28_BB B 42 ? B 28 ? B 41 ? B 29 ? 1 A C 27 1_555 A G 15 1_555 A A 26 1_555 A U 16 1_555 0.068 1.327 -3.319 -0.718 -10.837 -31.836 -3.983 0.230 -2.732 19.076 -1.263 -33.592 15 BB_C41A40:U30G29_BB B 41 ? B 29 ? B 40 ? B 30 ? 1 A A 26 1_555 A U 16 1_555 A C 25 1_555 A G 17 1_555 0.802 1.784 -3.145 -1.215 -3.417 -30.200 -4.035 1.754 -2.897 6.528 -2.322 -30.412 16 BB_A40C39:G31U30_BB B 40 ? B 30 ? B 39 ? B 31 ? 1 A A 19 1_555 A A 52 1_555 A U 20 1_555 A A 51 1_555 0.198 -1.843 3.291 10.902 3.856 39.482 -3.042 0.892 3.053 5.564 -15.732 41.075 17 BB_A33U34:A65A66_BB B 33 ? B 66 ? B 34 ? B 65 ? 1 A U 20 1_555 A A 51 1_555 A A 21 1_555 A A 50 1_555 -3.974 4.149 3.602 -23.151 18.922 -20.235 -7.234 -7.066 -2.640 -35.856 -43.871 -35.974 18 BB_U34A35:A64A65_BB B 34 ? B 65 ? B 35 ? B 64 ? 1 A A 21 1_555 A A 50 1_555 A C 47 1_555 A G 23 1_555 4.465 -0.066 -3.574 -2.014 -7.743 133.292 -0.093 -2.416 -3.604 -4.216 1.096 133.413 19 BB_A35C61:G37A64_BB B 35 ? B 64 ? B 61 ? B 37 ? 1 A G 24 1_555 A C 46 1_555 A U 53 1_555 A A 45 1_555 -2.074 -0.559 3.385 -5.052 8.561 54.499 -1.130 1.922 3.433 9.262 5.466 55.330 20 BB_G38U67:A59C60_BB B 38 ? B 60 ? B 67 ? B 59 ? 1 A U 53 1_555 A A 45 1_555 A G 54 1_555 A C 44 1_555 -0.526 -1.649 3.466 -0.204 4.190 34.146 -3.462 0.856 3.250 7.102 0.346 34.396 21 BB_U67G68:C58A59_BB B 67 ? B 59 ? B 68 ? B 58 ? 1 A G 54 1_555 A C 44 1_555 A U 55 1_555 A G 43 1_555 -0.249 -1.201 3.174 0.826 2.415 43.257 -1.852 0.415 3.101 3.273 -1.119 43.328 22 BB_G68U69:G57C58_BB B 68 ? B 58 ? B 69 ? B 57 ? 1 A U 55 1_555 A G 43 1_555 A C 56 1_555 A G 42 1_555 0.068 -1.346 3.064 3.280 8.689 26.571 -4.556 0.533 2.498 18.211 -6.875 28.120 23 BB_U69C70:G56G57_BB B 69 ? B 57 ? B 70 ? B 56 ? 1 A C 56 1_555 A G 42 1_555 A C 57 1_555 A G 41 1_555 0.102 -0.836 3.129 0.310 6.715 31.154 -2.663 -0.133 2.891 12.324 -0.569 31.853 24 BB_C70C71:G55G56_BB B 70 ? B 56 ? B 71 ? B 55 ? 1 A C 57 1_555 A G 41 1_555 A G 58 1_555 A C 40 1_555 0.791 -1.728 3.100 -0.076 9.476 33.353 -4.182 -1.339 2.528 16.110 0.130 34.637 25 BB_C71G72:C54G55_BB B 71 ? B 55 ? B 72 ? B 54 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01-GM073850 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id CMG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id CMG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT HEXAMMINE(III)' NCO 3 'ACETATE ION' ACT 4 '6-O-CYCLOHEXYLMETHYL GUANINE' CMG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4FE5 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #