HEADER VIRAL PROTEIN 28-FEB-20 6W02 TITLE CRYSTAL STRUCTURE OF ADP RIBOSE PHOSPHATASE OF NSP3 FROM SARS COV-2 IN TITLE 2 THE COMPLEX WITH ADP RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NSP3,ADP RIBOSE PHOSPHATASE,PL2-PRO,PAPAIN-LIKE PROTEASE, COMPND 5 PAPAIN-LIKE PROTEINASE,PL-PRO; COMPND 6 EC: 3.4.19.121, 3.4.22.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS SARS CORONA VIRUS, MACRO DOMAIN, ADP-RIBOSE, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, VIRAL KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.MICHALSKA,Y.KIM,R.JEDRZEJCZAK,N.MALTSEVA,M.ENDRES,A.MESECAR, AUTHOR 2 A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 8 11-OCT-23 6W02 1 REMARK REVDAT 7 18-AUG-21 6W02 1 AUTHOR REVDAT 6 27-JAN-21 6W02 1 COMPND REVDAT 5 14-OCT-20 6W02 1 COMPND SOURCE REVDAT 4 30-SEP-20 6W02 1 JRNL DBREF REVDAT 3 06-MAY-20 6W02 1 COMPND SOURCE DBREF SEQADV REVDAT 2 22-APR-20 6W02 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQRES HELIX SHEET SITE REVDAT 2 3 1 ATOM REVDAT 1 11-MAR-20 6W02 0 JRNL AUTH K.MICHALSKA,Y.KIM,R.JEDRZEJCZAK,N.I.MALTSEVA,L.STOLS, JRNL AUTH 2 M.ENDRES,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURES OF SARS-COV-2 ADP-RIBOSE PHOSPHATASE: JRNL TITL 2 FROM THE APO FORM TO LIGAND COMPLEXES. JRNL REF IUCRJ V. 7 814 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 32939273 JRNL DOI 10.1107/S2052252520009653 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.8 REMARK 3 NUMBER OF REFLECTIONS : 41796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4800 - 3.7000 0.89 2978 138 0.1291 0.1315 REMARK 3 2 3.7000 - 2.9400 0.91 3031 148 0.1462 0.1766 REMARK 3 3 2.9400 - 2.5600 0.91 2998 164 0.1593 0.1926 REMARK 3 4 2.5600 - 2.3300 0.93 3122 153 0.1630 0.1902 REMARK 3 5 2.3300 - 2.1600 0.87 2882 157 0.1530 0.1847 REMARK 3 6 2.1600 - 2.0400 0.93 3055 182 0.1558 0.1638 REMARK 3 7 2.0400 - 1.9300 0.93 3068 147 0.1664 0.2130 REMARK 3 8 1.9300 - 1.8500 0.87 2855 165 0.1640 0.1895 REMARK 3 9 1.8500 - 1.7800 0.90 2979 175 0.1579 0.1733 REMARK 3 10 1.7800 - 1.7200 0.91 3033 160 0.1504 0.1851 REMARK 3 11 1.7200 - 1.6600 0.91 2970 170 0.1418 0.1619 REMARK 3 12 1.6600 - 1.6200 0.70 2346 130 0.1473 0.1574 REMARK 3 13 1.6200 - 1.5700 0.54 1752 82 0.1494 0.1891 REMARK 3 14 1.5700 - 1.5300 0.44 1451 88 0.1569 0.1825 REMARK 3 15 1.5300 - 1.5000 0.35 1160 57 0.1718 0.2266 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.101 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.395 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2698 REMARK 3 ANGLE : 0.803 3683 REMARK 3 CHIRALITY : 0.051 436 REMARK 3 PLANARITY : 0.005 468 REMARK 3 DIHEDRAL : 15.708 1626 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8024 12.9954 23.6988 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.1623 REMARK 3 T33: 0.1497 T12: 0.0174 REMARK 3 T13: -0.0054 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.0699 L22: 1.8800 REMARK 3 L33: 1.3822 L12: -0.5916 REMARK 3 L13: -0.0611 L23: 0.6417 REMARK 3 S TENSOR REMARK 3 S11: 0.0689 S12: 0.0483 S13: 0.0449 REMARK 3 S21: -0.0284 S22: -0.0523 S23: 0.1178 REMARK 3 S31: -0.0422 S32: -0.1280 S33: -0.0777 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2640 3.6508 26.6933 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.1299 REMARK 3 T33: 0.1443 T12: -0.0178 REMARK 3 T13: -0.0300 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.2118 L22: 3.7447 REMARK 3 L33: 2.3692 L12: -0.6638 REMARK 3 L13: -0.3037 L23: -0.9380 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: 0.0094 S13: 0.0077 REMARK 3 S21: 0.2182 S22: -0.1592 S23: -0.1573 REMARK 3 S31: 0.0670 S32: 0.1564 S33: 0.0622 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8130 -1.1965 21.9842 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.1576 REMARK 3 T33: 0.1867 T12: -0.0217 REMARK 3 T13: -0.0119 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.5188 L22: 2.6273 REMARK 3 L33: 3.7611 L12: -0.8196 REMARK 3 L13: 1.0619 L23: -1.8744 REMARK 3 S TENSOR REMARK 3 S11: -0.0348 S12: -0.0835 S13: -0.0869 REMARK 3 S21: -0.0683 S22: 0.0061 S23: 0.3195 REMARK 3 S31: 0.1948 S32: -0.3140 S33: 0.0380 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2206 3.1879 18.0471 REMARK 3 T TENSOR REMARK 3 T11: 0.2055 T22: 0.1435 REMARK 3 T33: 0.1390 T12: 0.0074 REMARK 3 T13: -0.0148 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.6469 L22: 1.4718 REMARK 3 L33: 1.9654 L12: 0.2226 REMARK 3 L13: 0.6013 L23: -0.0504 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: 0.0833 S13: -0.1100 REMARK 3 S21: -0.2343 S22: -0.0345 S23: -0.0073 REMARK 3 S31: 0.2005 S32: -0.0298 S33: -0.0308 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7170 -1.8411 13.3081 REMARK 3 T TENSOR REMARK 3 T11: 0.2506 T22: 0.1535 REMARK 3 T33: 0.1463 T12: -0.0009 REMARK 3 T13: -0.0348 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.2344 L22: 1.8493 REMARK 3 L33: 1.5654 L12: -0.0556 REMARK 3 L13: -0.3031 L23: -0.5419 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: 0.1087 S13: -0.1132 REMARK 3 S21: -0.1851 S22: 0.0680 S23: -0.0097 REMARK 3 S31: 0.2384 S32: -0.1115 S33: 0.0189 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 158 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0878 -4.8495 8.3030 REMARK 3 T TENSOR REMARK 3 T11: 0.2786 T22: 0.1710 REMARK 3 T33: 0.3229 T12: 0.0293 REMARK 3 T13: -0.0173 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 4.6883 L22: 3.6520 REMARK 3 L33: 2.0299 L12: 2.0926 REMARK 3 L13: 0.1114 L23: 0.1322 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: 0.1352 S13: -1.0172 REMARK 3 S21: 0.1152 S22: -0.0281 S23: -0.2022 REMARK 3 S31: 0.3368 S32: 0.0377 S33: -0.0332 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0405 -2.0829 -3.1823 REMARK 3 T TENSOR REMARK 3 T11: 0.2008 T22: 0.2147 REMARK 3 T33: 0.1281 T12: 0.0115 REMARK 3 T13: 0.0188 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 3.1689 L22: 3.6078 REMARK 3 L33: 2.7173 L12: -0.2500 REMARK 3 L13: 0.7473 L23: -0.2791 REMARK 3 S TENSOR REMARK 3 S11: -0.0812 S12: -0.3262 S13: -0.0374 REMARK 3 S21: 0.6463 S22: 0.0973 S23: 0.0236 REMARK 3 S31: -0.0724 S32: -0.1984 S33: 0.0099 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7561 -9.4718 -8.9062 REMARK 3 T TENSOR REMARK 3 T11: 0.1570 T22: 0.1621 REMARK 3 T33: 0.1594 T12: 0.0257 REMARK 3 T13: -0.0287 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.6088 L22: 3.5313 REMARK 3 L33: 2.0988 L12: 0.3704 REMARK 3 L13: 0.2184 L23: 0.5508 REMARK 3 S TENSOR REMARK 3 S11: 0.0555 S12: -0.1520 S13: -0.1907 REMARK 3 S21: 0.3360 S22: 0.1564 S23: -0.2534 REMARK 3 S31: 0.3515 S32: 0.0602 S33: -0.1296 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6324 -11.9470 -22.0989 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.1201 REMARK 3 T33: 0.1633 T12: -0.0119 REMARK 3 T13: 0.0069 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.8675 L22: 1.4255 REMARK 3 L33: 2.4957 L12: -0.1048 REMARK 3 L13: 0.0888 L23: 0.0447 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.0551 S13: -0.1955 REMARK 3 S21: -0.1023 S22: 0.0118 S23: 0.0753 REMARK 3 S31: 0.1328 S32: -0.0403 S33: -0.1164 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5676 -19.1266 -21.1414 REMARK 3 T TENSOR REMARK 3 T11: 0.2006 T22: 0.1173 REMARK 3 T33: 0.2094 T12: 0.0082 REMARK 3 T13: -0.0212 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.6281 L22: 4.7222 REMARK 3 L33: 2.1035 L12: 0.6050 REMARK 3 L13: 0.4496 L23: -0.1118 REMARK 3 S TENSOR REMARK 3 S11: 0.2095 S12: 0.0762 S13: -0.4790 REMARK 3 S21: -0.0013 S22: 0.0262 S23: -0.2441 REMARK 3 S31: 0.5622 S32: 0.0523 S33: -0.1658 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1047 -18.9964 -28.0383 REMARK 3 T TENSOR REMARK 3 T11: 0.2254 T22: 0.2008 REMARK 3 T33: 0.2244 T12: -0.0430 REMARK 3 T13: -0.0137 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 3.1667 L22: 0.7017 REMARK 3 L33: 2.0431 L12: -0.7776 REMARK 3 L13: 1.7306 L23: -0.4354 REMARK 3 S TENSOR REMARK 3 S11: -0.1272 S12: 0.0397 S13: 0.1108 REMARK 3 S21: 0.0002 S22: -0.0474 S23: 0.1242 REMARK 3 S31: 0.1508 S32: -0.3440 S33: 0.1500 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0061 -8.6001 -23.8045 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.1521 REMARK 3 T33: 0.1386 T12: -0.0064 REMARK 3 T13: 0.0012 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.7398 L22: 2.6337 REMARK 3 L33: 1.9353 L12: -0.1321 REMARK 3 L13: 0.8735 L23: 0.7088 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: 0.0142 S13: -0.0863 REMARK 3 S21: -0.2683 S22: 0.0214 S23: 0.1859 REMARK 3 S31: 0.1200 S32: -0.1549 S33: -0.0119 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0730 1.3086 -19.9069 REMARK 3 T TENSOR REMARK 3 T11: 0.1408 T22: 0.1718 REMARK 3 T33: 0.2173 T12: 0.0192 REMARK 3 T13: -0.0461 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.0090 L22: 1.9028 REMARK 3 L33: 3.2995 L12: 0.6333 REMARK 3 L13: -0.9053 L23: -0.8026 REMARK 3 S TENSOR REMARK 3 S11: -0.0902 S12: -0.0536 S13: 0.2303 REMARK 3 S21: -0.1489 S22: 0.1024 S23: 0.3951 REMARK 3 S31: -0.2159 S32: -0.3149 S33: -0.0186 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1990 1.3664 -17.0227 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.1308 REMARK 3 T33: 0.1288 T12: 0.0110 REMARK 3 T13: -0.0004 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.7575 L22: 2.1358 REMARK 3 L33: 1.4769 L12: -0.1307 REMARK 3 L13: 0.4392 L23: 0.4524 REMARK 3 S TENSOR REMARK 3 S11: -0.1302 S12: -0.0978 S13: 0.1118 REMARK 3 S21: -0.0665 S22: 0.0956 S23: 0.0196 REMARK 3 S31: -0.1485 S32: -0.0606 S33: 0.0425 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9991 0.9731 -11.2158 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.1406 REMARK 3 T33: 0.1827 T12: 0.0186 REMARK 3 T13: -0.0003 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 2.7838 L22: 1.7027 REMARK 3 L33: 1.6085 L12: 0.3979 REMARK 3 L13: 0.0230 L23: -0.1514 REMARK 3 S TENSOR REMARK 3 S11: -0.0734 S12: -0.0559 S13: 0.2545 REMARK 3 S21: 0.2279 S22: 0.0643 S23: -0.1971 REMARK 3 S31: -0.1314 S32: 0.0453 S33: 0.0295 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5691 3.5924 3.5986 REMARK 3 T TENSOR REMARK 3 T11: 0.3027 T22: 0.2232 REMARK 3 T33: 0.1476 T12: 0.0198 REMARK 3 T13: -0.0474 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.3654 L22: 2.2004 REMARK 3 L33: 2.3265 L12: -0.3670 REMARK 3 L13: -1.0135 L23: 0.3091 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: 0.2071 S13: 0.1938 REMARK 3 S21: -0.2772 S22: -0.0060 S23: 0.0809 REMARK 3 S31: -0.3190 S32: -0.2774 S33: 0.0046 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0346 9.6885 7.4725 REMARK 3 T TENSOR REMARK 3 T11: 0.2604 T22: 0.1798 REMARK 3 T33: 0.1430 T12: -0.0033 REMARK 3 T13: -0.0035 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 1.4197 L22: 2.5193 REMARK 3 L33: 1.3205 L12: 0.2044 REMARK 3 L13: -0.3591 L23: 0.6768 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.1079 S13: 0.1735 REMARK 3 S21: -0.3040 S22: 0.1141 S23: 0.1220 REMARK 3 S31: -0.3183 S32: 0.0223 S33: -0.0930 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7648 12.1851 22.4437 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.1234 REMARK 3 T33: 0.1378 T12: 0.0189 REMARK 3 T13: -0.0049 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.4646 L22: 1.4176 REMARK 3 L33: 1.5682 L12: 0.2078 REMARK 3 L13: -0.1480 L23: 0.7687 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: 0.0859 S13: 0.1182 REMARK 3 S21: -0.1098 S22: -0.0237 S23: 0.0220 REMARK 3 S31: 0.0173 S32: 0.0814 S33: -0.0397 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6364 18.6523 19.6821 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.1532 REMARK 3 T33: 0.1713 T12: -0.0128 REMARK 3 T13: 0.0386 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.9715 L22: 4.1986 REMARK 3 L33: 1.6641 L12: -0.8109 REMARK 3 L13: 0.1840 L23: 1.5081 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.0671 S13: 0.0954 REMARK 3 S21: -0.3442 S22: 0.0737 S23: -0.2781 REMARK 3 S31: -0.2129 S32: 0.0706 S33: -0.0679 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6254 19.4215 29.4617 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.1749 REMARK 3 T33: 0.1741 T12: 0.0033 REMARK 3 T13: 0.0226 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.9959 L22: 0.7252 REMARK 3 L33: 3.2187 L12: 0.5472 REMARK 3 L13: -2.0684 L23: -1.1534 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: 0.0846 S13: 0.0298 REMARK 3 S21: 0.0200 S22: 0.0648 S23: 0.1583 REMARK 3 S31: 0.0037 S32: -0.2861 S33: 0.0477 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6W02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1000247369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42236 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 37.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 36.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.22400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDBID 6VXS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M SODIUM CITRATE, 33 %(W/V) REMARK 280 PEG6000, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 169 REMARK 465 GLU A 170 REMARK 465 GLY B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 86 -128.39 52.95 REMARK 500 SER A 128 -0.28 66.73 REMARK 500 LYS B 31 70.85 34.32 REMARK 500 HIS B 86 -129.69 53.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VXS RELATED DB: PDB REMARK 900 THE SAME PROTEIN APP-FORM DBREF 6W02 A 2 170 UNP P0DTD1 R1AB_SARS2 1024 1192 DBREF 6W02 B 2 170 UNP P0DTD1 R1AB_SARS2 1024 1192 SEQADV 6W02 GLY A 1 UNP P0DTD1 EXPRESSION TAG SEQADV 6W02 GLY B 1 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 170 GLY GLU VAL ASN SER PHE SER GLY TYR LEU LYS LEU THR SEQRES 2 A 170 ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU GLU SEQRES 3 A 170 ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA ALA SEQRES 4 A 170 ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY ALA SEQRES 5 A 170 LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SER SEQRES 6 A 170 ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL GLY SEQRES 7 A 170 GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS HIS SEQRES 8 A 170 CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY GLU SEQRES 9 A 170 ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE ASN SEQRES 10 A 170 GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA GLY SEQRES 11 A 170 ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL CYS SEQRES 12 A 170 VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL PHE SEQRES 13 A 170 ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE LEU SEQRES 14 A 170 GLU SEQRES 1 B 170 GLY GLU VAL ASN SER PHE SER GLY TYR LEU LYS LEU THR SEQRES 2 B 170 ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU GLU SEQRES 3 B 170 ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA ALA SEQRES 4 B 170 ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY ALA SEQRES 5 B 170 LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SER SEQRES 6 B 170 ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL GLY SEQRES 7 B 170 GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS HIS SEQRES 8 B 170 CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY GLU SEQRES 9 B 170 ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE ASN SEQRES 10 B 170 GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA GLY SEQRES 11 B 170 ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL CYS SEQRES 12 B 170 VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL PHE SEQRES 13 B 170 ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE LEU SEQRES 14 B 170 GLU HET APR A 201 36 HET EDO A 202 4 HET APR B 201 36 HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 APR 2(C15 H23 N5 O14 P2) FORMUL 4 EDO C2 H6 O2 FORMUL 6 HOH *373(H2 O) HELIX 1 AA1 ASP A 22 LYS A 31 1 10 HELIX 2 AA2 GLY A 48 THR A 57 1 10 HELIX 3 AA3 ASN A 59 GLY A 73 1 15 HELIX 4 AA4 ASN A 99 GLY A 103 5 5 HELIX 5 AA5 GLN A 107 ASN A 115 1 9 HELIX 6 AA6 PHE A 116 HIS A 119 5 4 HELIX 7 AA7 ASP A 135 VAL A 147 1 13 HELIX 8 AA8 ASP A 157 PHE A 168 1 12 HELIX 9 AA9 ASP B 22 LYS B 31 1 10 HELIX 10 AB1 GLY B 48 THR B 57 1 10 HELIX 11 AB2 ASN B 59 GLY B 73 1 15 HELIX 12 AB3 ASN B 99 GLY B 103 5 5 HELIX 13 AB4 GLN B 107 ASN B 115 1 9 HELIX 14 AB5 PHE B 116 HIS B 119 5 4 HELIX 15 AB6 ASP B 135 VAL B 147 1 13 HELIX 16 AB7 ASP B 157 PHE B 168 1 12 SHEET 1 AA1 4 LEU A 10 LYS A 11 0 SHEET 2 AA1 4 VAL A 16 ASN A 20 -1 O ILE A 18 N LEU A 10 SHEET 3 AA1 4 ASN A 150 VAL A 155 1 O LEU A 153 N TYR A 17 SHEET 4 AA1 4 VAL A 121 ALA A 124 1 N LEU A 122 O TYR A 152 SHEET 1 AA2 3 VAL A 34 ALA A 38 0 SHEET 2 AA2 3 HIS A 91 VAL A 95 1 O VAL A 95 N ASN A 37 SHEET 3 AA2 3 SER A 80 SER A 84 -1 N LEU A 83 O CYS A 92 SHEET 1 AA3 4 LEU B 10 LYS B 11 0 SHEET 2 AA3 4 VAL B 16 ASN B 20 -1 O ILE B 18 N LEU B 10 SHEET 3 AA3 4 ASN B 150 VAL B 155 1 O LEU B 153 N TYR B 17 SHEET 4 AA3 4 VAL B 121 ALA B 124 1 N LEU B 122 O TYR B 152 SHEET 1 AA4 3 VAL B 34 ALA B 38 0 SHEET 2 AA4 3 HIS B 91 VAL B 95 1 O VAL B 95 N ASN B 37 SHEET 3 AA4 3 SER B 80 SER B 84 -1 N LEU B 83 O CYS B 92 SITE 1 AC1 27 ASP A 22 ILE A 23 ALA A 38 ASN A 40 SITE 2 AC1 27 LYS A 44 GLY A 46 GLY A 47 GLY A 48 SITE 3 AC1 27 VAL A 49 LEU A 126 SER A 128 ALA A 129 SITE 4 AC1 27 GLY A 130 ILE A 131 PHE A 132 ALA A 154 SITE 5 AC1 27 PHE A 156 LEU A 160 HOH A 316 HOH A 324 SITE 6 AC1 27 HOH A 344 HOH A 357 HOH A 364 HOH A 371 SITE 7 AC1 27 HOH A 384 HOH A 406 THR B 71 SITE 1 AC2 3 HOH A 338 ALA B 70 HOH B 425 SITE 1 AC3 30 ALA B 21 ASP B 22 ILE B 23 ALA B 38 SITE 2 AC3 30 ASN B 40 LYS B 44 HIS B 45 GLY B 46 SITE 3 AC3 30 GLY B 47 GLY B 48 VAL B 49 ALA B 50 SITE 4 AC3 30 LEU B 126 SER B 128 ALA B 129 GLY B 130 SITE 5 AC3 30 ILE B 131 PHE B 132 ALA B 154 PHE B 156 SITE 6 AC3 30 HOH B 314 HOH B 315 HOH B 332 HOH B 337 SITE 7 AC3 30 HOH B 360 HOH B 371 HOH B 379 HOH B 384 SITE 8 AC3 30 HOH B 407 HOH B 417 CRYST1 33.264 37.842 68.296 97.86 97.38 89.94 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030063 -0.000031 0.003925 0.00000 SCALE2 0.000000 0.026426 0.003675 0.00000 SCALE3 0.000000 0.000000 0.014906 0.00000