data_7A4M # _entry.id 7A4M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7A4M pdb_00007a4m 10.2210/pdb7a4m/pdb WWPDB D_1292110794 ? ? EMDB EMD-11638 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of mouse heavy-chain apoferritin at 1.22 A' _pdbx_database_related.db_id EMD-11638 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7A4M _pdbx_database_status.recvd_initial_deposition_date 2020-08-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nakane, T.' 1 0000-0003-2697-2767 'Kotecha, A.' 2 0000-0002-4480-5439 'Sente, A.' 3 0000-0001-5407-9138 'Yamashita, K.' 4 ? 'McMullan, G.' 5 ? 'Masiulis, S.' 6 ? 'Brown, P.M.G.E.' 7 ? 'Grigoras, I.T.' 8 ? 'Malinauskaite, L.' 9 ? 'Malinauskas, T.' 10 ? 'Miehling, J.' 11 ? 'Yu, L.' 12 ? 'Karia, D.' 13 ? 'Pechnikova, E.V.' 14 ? 'de Jong, E.' 15 ? 'Keizer, J.' 16 ? 'Bischoff, M.' 17 ? 'McCormack, J.' 18 ? 'Tiemeijer, P.' 19 ? 'Hardwick, S.W.' 20 ? 'Chirgadze, D.Y.' 21 ? 'Murshudov, G.' 22 0000-0001-6483-3587 'Aricescu, A.R.' 23 0000-0003-3783-1388 'Scheres, S.H.W.' 24 0000-0002-0462-6540 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 587 _citation.language ? _citation.page_first 152 _citation.page_last 156 _citation.title 'Single-particle cryo-EM at atomic resolution.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-020-2829-0 _citation.pdbx_database_id_PubMed 33087931 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nakane, T.' 1 ? primary 'Kotecha, A.' 2 ? primary 'Sente, A.' 3 ? primary 'McMullan, G.' 4 ? primary 'Masiulis, S.' 5 ? primary 'Brown, P.M.G.E.' 6 ? primary 'Grigoras, I.T.' 7 ? primary 'Malinauskaite, L.' 8 ? primary 'Malinauskas, T.' 9 ? primary 'Miehling, J.' 10 ? primary 'Uchanski, T.' 11 ? primary 'Yu, L.' 12 ? primary 'Karia, D.' 13 ? primary 'Pechnikova, E.V.' 14 ? primary 'de Jong, E.' 15 ? primary 'Keizer, J.' 16 ? primary 'Bischoff, M.' 17 ? primary 'McCormack, J.' 18 ? primary 'Tiemeijer, P.' 19 ? primary 'Hardwick, S.W.' 20 ? primary 'Chirgadze, D.Y.' 21 ? primary 'Murshudov, G.' 22 ? primary 'Aricescu, A.R.' 23 ? primary 'Scheres, S.H.W.' 24 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7A4M _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7A4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ferritin heavy chain' 20079.594 1 1.16.3.1 ? ? ? 2 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 4 water nat water 18.015 110 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ferritin H subunit' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PSQVRQNYHQDAEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQD IKKPDRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETYYLSEQVKSIKELGDHVTNLRKMGAPEAG MAEYLFDKHTLG ; _entity_poly.pdbx_seq_one_letter_code_can ;PSQVRQNYHQDAEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQD IKKPDRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETYYLSEQVKSIKELGDHVTNLRKMGAPEAG MAEYLFDKHTLG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 SER n 1 3 GLN n 1 4 VAL n 1 5 ARG n 1 6 GLN n 1 7 ASN n 1 8 TYR n 1 9 HIS n 1 10 GLN n 1 11 ASP n 1 12 ALA n 1 13 GLU n 1 14 ALA n 1 15 ALA n 1 16 ILE n 1 17 ASN n 1 18 ARG n 1 19 GLN n 1 20 ILE n 1 21 ASN n 1 22 LEU n 1 23 GLU n 1 24 LEU n 1 25 TYR n 1 26 ALA n 1 27 SER n 1 28 TYR n 1 29 VAL n 1 30 TYR n 1 31 LEU n 1 32 SER n 1 33 MET n 1 34 SER n 1 35 CYS n 1 36 TYR n 1 37 PHE n 1 38 ASP n 1 39 ARG n 1 40 ASP n 1 41 ASP n 1 42 VAL n 1 43 ALA n 1 44 LEU n 1 45 LYS n 1 46 ASN n 1 47 PHE n 1 48 ALA n 1 49 LYS n 1 50 TYR n 1 51 PHE n 1 52 LEU n 1 53 HIS n 1 54 GLN n 1 55 SER n 1 56 HIS n 1 57 GLU n 1 58 GLU n 1 59 ARG n 1 60 GLU n 1 61 HIS n 1 62 ALA n 1 63 GLU n 1 64 LYS n 1 65 LEU n 1 66 MET n 1 67 LYS n 1 68 LEU n 1 69 GLN n 1 70 ASN n 1 71 GLN n 1 72 ARG n 1 73 GLY n 1 74 GLY n 1 75 ARG n 1 76 ILE n 1 77 PHE n 1 78 LEU n 1 79 GLN n 1 80 ASP n 1 81 ILE n 1 82 LYS n 1 83 LYS n 1 84 PRO n 1 85 ASP n 1 86 ARG n 1 87 ASP n 1 88 ASP n 1 89 TRP n 1 90 GLU n 1 91 SER n 1 92 GLY n 1 93 LEU n 1 94 ASN n 1 95 ALA n 1 96 MET n 1 97 GLU n 1 98 CYS n 1 99 ALA n 1 100 LEU n 1 101 HIS n 1 102 LEU n 1 103 GLU n 1 104 LYS n 1 105 SER n 1 106 VAL n 1 107 ASN n 1 108 GLN n 1 109 SER n 1 110 LEU n 1 111 LEU n 1 112 GLU n 1 113 LEU n 1 114 HIS n 1 115 LYS n 1 116 LEU n 1 117 ALA n 1 118 THR n 1 119 ASP n 1 120 LYS n 1 121 ASN n 1 122 ASP n 1 123 PRO n 1 124 HIS n 1 125 LEU n 1 126 CYS n 1 127 ASP n 1 128 PHE n 1 129 ILE n 1 130 GLU n 1 131 THR n 1 132 TYR n 1 133 TYR n 1 134 LEU n 1 135 SER n 1 136 GLU n 1 137 GLN n 1 138 VAL n 1 139 LYS n 1 140 SER n 1 141 ILE n 1 142 LYS n 1 143 GLU n 1 144 LEU n 1 145 GLY n 1 146 ASP n 1 147 HIS n 1 148 VAL n 1 149 THR n 1 150 ASN n 1 151 LEU n 1 152 ARG n 1 153 LYS n 1 154 MET n 1 155 GLY n 1 156 ALA n 1 157 PRO n 1 158 GLU n 1 159 ALA n 1 160 GLY n 1 161 MET n 1 162 ALA n 1 163 GLU n 1 164 TYR n 1 165 LEU n 1 166 PHE n 1 167 ASP n 1 168 LYS n 1 169 HIS n 1 170 THR n 1 171 LEU n 1 172 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 172 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Fth1, Fth' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FRIH_MOUSE _struct_ref.pdbx_db_accession P09528 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PSQVRQNYHQDAEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQD IKKPDRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETYYLSEQVKSIKELGDHVTNLRKMGAPEAG MAEYLFDKHTLG ; _struct_ref.pdbx_align_begin 6 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7A4M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 172 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P09528 _struct_ref_seq.db_align_beg 6 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 177 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 176 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7A4M _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.00 _refine.B_iso_max ? _refine.B_iso_mean 23.691 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.845 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7A4M _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.22 _refine.ls_d_res_low 136.50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2933695 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.00 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.19618 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.19618 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'PARAMETERS FOR MASK CACLULATION' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.006 _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B 1.487 _refine.overall_SU_ML 0.024 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high . _refine_hist.d_res_low . _refine_hist.number_atoms_solvent ? _refine_hist.number_atoms_total 1668 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein ? _refine_hist.pdbx_number_atoms_nucleic_acid ? _refine_hist.pdbx_number_atoms_ligand ? _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.009 0.012 1601 ? r_bond_refined_d ? ? 'ELECTRON MICROSCOPY' ? 0.000 0.017 1471 ? r_bond_other_d ? ? 'ELECTRON MICROSCOPY' ? 1.549 1.633 2170 ? r_angle_refined_deg ? ? 'ELECTRON MICROSCOPY' ? 0.578 1.578 3386 ? r_angle_other_deg ? ? 'ELECTRON MICROSCOPY' ? 4.960 5.000 200 ? r_dihedral_angle_1_deg ? ? 'ELECTRON MICROSCOPY' ? 35.682 22.700 100 ? r_dihedral_angle_2_deg ? ? 'ELECTRON MICROSCOPY' ? 12.155 15.000 294 ? r_dihedral_angle_3_deg ? ? 'ELECTRON MICROSCOPY' ? 24.547 15.000 11 ? r_dihedral_angle_4_deg ? ? 'ELECTRON MICROSCOPY' ? 0.083 0.200 193 ? r_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.009 0.020 1908 ? r_gen_planes_refined ? ? 'ELECTRON MICROSCOPY' ? 0.002 0.020 393 ? r_gen_planes_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? 2.234 1.761 767 ? r_mcbond_it ? ? 'ELECTRON MICROSCOPY' ? 2.138 1.755 765 ? r_mcbond_other ? ? 'ELECTRON MICROSCOPY' ? 2.970 2.649 978 ? r_mcangle_it ? ? 'ELECTRON MICROSCOPY' ? 2.876 2.648 978 ? r_mcangle_other ? ? 'ELECTRON MICROSCOPY' ? 7.697 2.581 834 ? r_scbond_it ? ? 'ELECTRON MICROSCOPY' ? 7.693 2.581 835 ? r_scbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_scangle_it ? ? 'ELECTRON MICROSCOPY' ? 7.852 3.574 1193 ? r_scangle_other ? ? 'ELECTRON MICROSCOPY' ? 5.495 29.304 1884 ? r_long_range_B_refined ? ? 'ELECTRON MICROSCOPY' ? 5.424 27.117 1860 ? r_long_range_B_other ? ? 'ELECTRON MICROSCOPY' ? 4.697 3.000 3072 ? r_rigid_bond_restr ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_free ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_ls_shell.d_res_high 1.220 _refine_ls_shell.d_res_low 1.226 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 0 _refine_ls_shell.number_reflns_R_work 43710 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.740 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 100 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2 generate ? 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.00000 0.00000 0.00000 3 generate ? 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.00000 0.00000 0.00000 4 generate ? 0.000000 1.000000 0.000000 -1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.00000 136.49921 0.00000 5 generate ? -1.000000 0.000000 0.000000 0.000000 -1.000000 0.000000 0.000000 0.000000 1.000000 136.49921 136.49921 0.00000 6 generate ? 0.000000 -1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 136.49921 0.00000 0.00000 7 generate ? -1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 136.49921 0.00000 0.00000 8 generate ? 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 -1.000000 0.000000 0.000000 0.00000 0.00000 136.49921 9 generate ? 1.000000 0.000000 0.000000 0.000000 0.000000 -1.000000 0.000000 1.000000 0.000000 0.00000 136.49921 0.00000 10 generate ? 0.000000 0.000000 1.000000 0.000000 -1.000000 0.000000 1.000000 0.000000 0.000000 0.00000 136.49921 0.00000 11 generate ? 0.000000 -1.000000 0.000000 0.000000 0.000000 1.000000 -1.000000 0.000000 0.000000 136.49921 0.00000 136.49921 12 generate ? 0.000000 0.000000 1.000000 -1.000000 0.000000 0.000000 0.000000 -1.000000 0.000000 0.00000 136.49921 136.49921 13 generate ? 0.000000 0.000000 -1.000000 -1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 136.49921 136.49921 0.00000 14 generate ? 0.000000 -1.000000 0.000000 0.000000 0.000000 -1.000000 1.000000 0.000000 0.000000 136.49921 136.49921 0.00000 15 generate ? 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -1.000000 0.000000 0.00000 0.00000 136.49921 16 generate ? 0.000000 0.000000 -1.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 136.49921 0.00000 0.00000 17 generate ? 0.000000 1.000000 0.000000 0.000000 0.000000 -1.000000 -1.000000 0.000000 0.000000 0.00000 136.49921 136.49921 18 generate ? 0.000000 0.000000 -1.000000 0.000000 -1.000000 0.000000 -1.000000 0.000000 0.000000 136.49921 136.49921 136.49921 19 generate ? -1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -1.000000 136.49921 0.00000 136.49921 20 generate ? 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 -1.000000 0.00000 0.00000 136.49921 21 generate ? 1.000000 0.000000 0.000000 0.000000 -1.000000 0.000000 0.000000 0.000000 -1.000000 0.00000 136.49921 136.49921 22 generate ? -1.000000 0.000000 0.000000 0.000000 0.000000 -1.000000 0.000000 -1.000000 0.000000 136.49921 136.49921 136.49921 23 generate ? 0.000000 0.000000 -1.000000 1.000000 0.000000 0.000000 0.000000 -1.000000 0.000000 136.49921 0.00000 136.49921 24 generate ? 0.000000 -1.000000 0.000000 -1.000000 0.000000 0.000000 0.000000 0.000000 -1.000000 136.49921 136.49921 136.49921 # _struct.entry_id 7A4M _struct.title 'Cryo-EM structure of mouse heavy-chain apoferritin at 1.22 A' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7A4M _struct_keywords.text 'Iron storage, metal binding protein' _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 9 ? ASP A 38 ? HIS A 13 ASP A 42 1 ? 30 HELX_P HELX_P2 AA2 LEU A 44 ? ARG A 72 ? LEU A 48 ARG A 76 1 ? 29 HELX_P HELX_P3 AA3 SER A 91 ? LYS A 120 ? SER A 95 LYS A 124 1 ? 30 HELX_P HELX_P4 AA4 ASP A 122 ? TYR A 133 ? ASP A 126 TYR A 137 1 ? 12 HELX_P HELX_P5 AA5 TYR A 133 ? GLY A 155 ? TYR A 137 GLY A 159 1 ? 23 HELX_P HELX_P6 AA6 GLY A 160 ? THR A 170 ? GLY A 164 THR A 174 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 23 OE2 ? ? ? 1_555 C ZN . ZN ? ? A GLU 27 A ZN 202 1_555 ? ? ? ? ? ? ? 1.913 ? ? metalc2 metalc ? ? A GLU 58 OE1 ? ? ? 1_555 C ZN . ZN ? ? A GLU 62 A ZN 202 1_555 ? ? ? ? ? ? ? 2.137 ? ? metalc3 metalc ? ? A HIS 61 ND1 A ? ? 1_555 C ZN . ZN ? ? A HIS 65 A ZN 202 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc4 metalc ? ? C ZN . ZN ? ? ? 1_555 D HOH . O ? ? A ZN 202 A HOH 308 1_555 ? ? ? ? ? ? ? 2.366 ? ? metalc5 metalc ? ? C ZN . ZN ? ? ? 1_555 D HOH . O ? ? A ZN 202 A HOH 312 1_555 ? ? ? ? ? ? ? 2.112 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 156 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 160 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 157 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 161 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -7.83 # _atom_sites.entry_id 7A4M _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C FE H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 5 5 PRO PRO A . n A 1 2 SER 2 6 6 SER SER A . n A 1 3 GLN 3 7 7 GLN GLN A . n A 1 4 VAL 4 8 8 VAL VAL A . n A 1 5 ARG 5 9 9 ARG ARG A . n A 1 6 GLN 6 10 10 GLN GLN A . n A 1 7 ASN 7 11 11 ASN ASN A . n A 1 8 TYR 8 12 12 TYR TYR A . n A 1 9 HIS 9 13 13 HIS HIS A . n A 1 10 GLN 10 14 14 GLN GLN A . n A 1 11 ASP 11 15 15 ASP ASP A . n A 1 12 ALA 12 16 16 ALA ALA A . n A 1 13 GLU 13 17 17 GLU GLU A . n A 1 14 ALA 14 18 18 ALA ALA A . n A 1 15 ALA 15 19 19 ALA ALA A . n A 1 16 ILE 16 20 20 ILE ILE A . n A 1 17 ASN 17 21 21 ASN ASN A . n A 1 18 ARG 18 22 22 ARG ARG A . n A 1 19 GLN 19 23 23 GLN GLN A . n A 1 20 ILE 20 24 24 ILE ILE A . n A 1 21 ASN 21 25 25 ASN ASN A . n A 1 22 LEU 22 26 26 LEU LEU A . n A 1 23 GLU 23 27 27 GLU GLU A . n A 1 24 LEU 24 28 28 LEU LEU A . n A 1 25 TYR 25 29 29 TYR TYR A . n A 1 26 ALA 26 30 30 ALA ALA A . n A 1 27 SER 27 31 31 SER SER A . n A 1 28 TYR 28 32 32 TYR TYR A . n A 1 29 VAL 29 33 33 VAL VAL A . n A 1 30 TYR 30 34 34 TYR TYR A . n A 1 31 LEU 31 35 35 LEU LEU A . n A 1 32 SER 32 36 36 SER SER A . n A 1 33 MET 33 37 37 MET MET A . n A 1 34 SER 34 38 38 SER SER A . n A 1 35 CYS 35 39 39 CYS CYS A . n A 1 36 TYR 36 40 40 TYR TYR A . n A 1 37 PHE 37 41 41 PHE PHE A . n A 1 38 ASP 38 42 42 ASP ASP A . n A 1 39 ARG 39 43 43 ARG ARG A . n A 1 40 ASP 40 44 44 ASP ASP A . n A 1 41 ASP 41 45 45 ASP ASP A . n A 1 42 VAL 42 46 46 VAL VAL A . n A 1 43 ALA 43 47 47 ALA ALA A . n A 1 44 LEU 44 48 48 LEU LEU A . n A 1 45 LYS 45 49 49 LYS LYS A . n A 1 46 ASN 46 50 50 ASN ASN A . n A 1 47 PHE 47 51 51 PHE PHE A . n A 1 48 ALA 48 52 52 ALA ALA A . n A 1 49 LYS 49 53 53 LYS LYS A . n A 1 50 TYR 50 54 54 TYR TYR A . n A 1 51 PHE 51 55 55 PHE PHE A . n A 1 52 LEU 52 56 56 LEU LEU A . n A 1 53 HIS 53 57 57 HIS HIS A . n A 1 54 GLN 54 58 58 GLN GLN A . n A 1 55 SER 55 59 59 SER SER A . n A 1 56 HIS 56 60 60 HIS HIS A . n A 1 57 GLU 57 61 61 GLU GLU A . n A 1 58 GLU 58 62 62 GLU GLU A . n A 1 59 ARG 59 63 63 ARG ARG A . n A 1 60 GLU 60 64 64 GLU GLU A . n A 1 61 HIS 61 65 65 HIS HIS A . n A 1 62 ALA 62 66 66 ALA ALA A . n A 1 63 GLU 63 67 67 GLU GLU A . n A 1 64 LYS 64 68 68 LYS LYS A . n A 1 65 LEU 65 69 69 LEU LEU A . n A 1 66 MET 66 70 70 MET MET A . n A 1 67 LYS 67 71 71 LYS LYS A . n A 1 68 LEU 68 72 72 LEU LEU A . n A 1 69 GLN 69 73 73 GLN GLN A . n A 1 70 ASN 70 74 74 ASN ASN A . n A 1 71 GLN 71 75 75 GLN GLN A . n A 1 72 ARG 72 76 76 ARG ARG A . n A 1 73 GLY 73 77 77 GLY GLY A . n A 1 74 GLY 74 78 78 GLY GLY A . n A 1 75 ARG 75 79 79 ARG ARG A . n A 1 76 ILE 76 80 80 ILE ILE A . n A 1 77 PHE 77 81 81 PHE PHE A . n A 1 78 LEU 78 82 82 LEU LEU A . n A 1 79 GLN 79 83 83 GLN GLN A . n A 1 80 ASP 80 84 84 ASP ASP A . n A 1 81 ILE 81 85 85 ILE ILE A . n A 1 82 LYS 82 86 86 LYS LYS A . n A 1 83 LYS 83 87 87 LYS LYS A . n A 1 84 PRO 84 88 88 PRO PRO A . n A 1 85 ASP 85 89 89 ASP ASP A . n A 1 86 ARG 86 90 90 ARG ARG A . n A 1 87 ASP 87 91 91 ASP ASP A . n A 1 88 ASP 88 92 92 ASP ASP A . n A 1 89 TRP 89 93 93 TRP TRP A . n A 1 90 GLU 90 94 94 GLU GLU A . n A 1 91 SER 91 95 95 SER SER A . n A 1 92 GLY 92 96 96 GLY GLY A . n A 1 93 LEU 93 97 97 LEU LEU A . n A 1 94 ASN 94 98 98 ASN ASN A . n A 1 95 ALA 95 99 99 ALA ALA A . n A 1 96 MET 96 100 100 MET MET A . n A 1 97 GLU 97 101 101 GLU GLU A . n A 1 98 CYS 98 102 102 CYS CYS A . n A 1 99 ALA 99 103 103 ALA ALA A . n A 1 100 LEU 100 104 104 LEU LEU A . n A 1 101 HIS 101 105 105 HIS HIS A . n A 1 102 LEU 102 106 106 LEU LEU A . n A 1 103 GLU 103 107 107 GLU GLU A . n A 1 104 LYS 104 108 108 LYS LYS A . n A 1 105 SER 105 109 109 SER SER A . n A 1 106 VAL 106 110 110 VAL VAL A . n A 1 107 ASN 107 111 111 ASN ASN A . n A 1 108 GLN 108 112 112 GLN GLN A . n A 1 109 SER 109 113 113 SER SER A . n A 1 110 LEU 110 114 114 LEU LEU A . n A 1 111 LEU 111 115 115 LEU LEU A . n A 1 112 GLU 112 116 116 GLU GLU A . n A 1 113 LEU 113 117 117 LEU LEU A . n A 1 114 HIS 114 118 118 HIS HIS A . n A 1 115 LYS 115 119 119 LYS LYS A . n A 1 116 LEU 116 120 120 LEU LEU A . n A 1 117 ALA 117 121 121 ALA ALA A . n A 1 118 THR 118 122 122 THR THR A . n A 1 119 ASP 119 123 123 ASP ASP A . n A 1 120 LYS 120 124 124 LYS LYS A . n A 1 121 ASN 121 125 125 ASN ASN A . n A 1 122 ASP 122 126 126 ASP ASP A . n A 1 123 PRO 123 127 127 PRO PRO A . n A 1 124 HIS 124 128 128 HIS HIS A . n A 1 125 LEU 125 129 129 LEU LEU A . n A 1 126 CYS 126 130 130 CYS CYS A . n A 1 127 ASP 127 131 131 ASP ASP A . n A 1 128 PHE 128 132 132 PHE PHE A . n A 1 129 ILE 129 133 133 ILE ILE A . n A 1 130 GLU 130 134 134 GLU GLU A . n A 1 131 THR 131 135 135 THR THR A . n A 1 132 TYR 132 136 136 TYR TYR A . n A 1 133 TYR 133 137 137 TYR TYR A . n A 1 134 LEU 134 138 138 LEU LEU A . n A 1 135 SER 135 139 139 SER SER A . n A 1 136 GLU 136 140 140 GLU GLU A . n A 1 137 GLN 137 141 141 GLN GLN A . n A 1 138 VAL 138 142 142 VAL VAL A . n A 1 139 LYS 139 143 143 LYS LYS A . n A 1 140 SER 140 144 144 SER SER A . n A 1 141 ILE 141 145 145 ILE ILE A . n A 1 142 LYS 142 146 146 LYS LYS A . n A 1 143 GLU 143 147 147 GLU GLU A . n A 1 144 LEU 144 148 148 LEU LEU A . n A 1 145 GLY 145 149 149 GLY GLY A . n A 1 146 ASP 146 150 150 ASP ASP A . n A 1 147 HIS 147 151 151 HIS HIS A . n A 1 148 VAL 148 152 152 VAL VAL A . n A 1 149 THR 149 153 153 THR THR A . n A 1 150 ASN 150 154 154 ASN ASN A . n A 1 151 LEU 151 155 155 LEU LEU A . n A 1 152 ARG 152 156 156 ARG ARG A . n A 1 153 LYS 153 157 157 LYS LYS A . n A 1 154 MET 154 158 158 MET MET A . n A 1 155 GLY 155 159 159 GLY GLY A . n A 1 156 ALA 156 160 160 ALA ALA A . n A 1 157 PRO 157 161 161 PRO PRO A . n A 1 158 GLU 158 162 162 GLU GLU A . n A 1 159 ALA 159 163 163 ALA ALA A . n A 1 160 GLY 160 164 164 GLY GLY A . n A 1 161 MET 161 165 165 MET MET A . n A 1 162 ALA 162 166 166 ALA ALA A . n A 1 163 GLU 163 167 167 GLU GLU A . n A 1 164 TYR 164 168 168 TYR TYR A . n A 1 165 LEU 165 169 169 LEU LEU A . n A 1 166 PHE 166 170 170 PHE PHE A . n A 1 167 ASP 167 171 171 ASP ASP A . n A 1 168 LYS 168 172 172 LYS LYS A . n A 1 169 HIS 169 173 173 HIS HIS A . n A 1 170 THR 170 174 174 THR THR A . n A 1 171 LEU 171 175 175 LEU LEU A . n A 1 172 GLY 172 176 176 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE 1 201 201 FE FE A . C 3 ZN 1 202 202 ZN ZN A . D 4 HOH 1 301 431 HOH HOH A . D 4 HOH 2 302 418 HOH HOH A . D 4 HOH 3 303 337 HOH HOH A . D 4 HOH 4 304 379 HOH HOH A . D 4 HOH 5 305 433 HOH HOH A . D 4 HOH 6 306 372 HOH HOH A . D 4 HOH 7 307 392 HOH HOH A . D 4 HOH 8 308 422 HOH HOH A . D 4 HOH 9 309 364 HOH HOH A . D 4 HOH 10 310 346 HOH HOH A . D 4 HOH 11 311 319 HOH HOH A . D 4 HOH 12 312 374 HOH HOH A . D 4 HOH 13 313 365 HOH HOH A . D 4 HOH 14 314 369 HOH HOH A . D 4 HOH 15 315 347 HOH HOH A . D 4 HOH 16 316 348 HOH HOH A . D 4 HOH 17 317 401 HOH HOH A . D 4 HOH 18 318 350 HOH HOH A . D 4 HOH 19 319 409 HOH HOH A . D 4 HOH 20 320 411 HOH HOH A . D 4 HOH 21 321 330 HOH HOH A . D 4 HOH 22 322 367 HOH HOH A . D 4 HOH 23 323 402 HOH HOH A . D 4 HOH 24 324 400 HOH HOH A . D 4 HOH 25 325 321 HOH HOH A . D 4 HOH 26 326 434 HOH HOH A . D 4 HOH 27 327 363 HOH HOH A . D 4 HOH 28 328 393 HOH HOH A . D 4 HOH 29 329 381 HOH HOH A . D 4 HOH 30 330 341 HOH HOH A . D 4 HOH 31 331 334 HOH HOH A . D 4 HOH 32 332 339 HOH HOH A . D 4 HOH 33 333 403 HOH HOH A . D 4 HOH 34 334 331 HOH HOH A . D 4 HOH 35 335 320 HOH HOH A . D 4 HOH 36 336 352 HOH HOH A . D 4 HOH 37 337 301 HOH HOH A . D 4 HOH 38 338 373 HOH HOH A . D 4 HOH 39 339 377 HOH HOH A . D 4 HOH 40 340 309 HOH HOH A . D 4 HOH 41 341 328 HOH HOH A . D 4 HOH 42 342 384 HOH HOH A . D 4 HOH 43 343 371 HOH HOH A . D 4 HOH 44 344 353 HOH HOH A . D 4 HOH 45 345 385 HOH HOH A . D 4 HOH 46 346 340 HOH HOH A . D 4 HOH 47 347 332 HOH HOH A . D 4 HOH 48 348 344 HOH HOH A . D 4 HOH 49 349 342 HOH HOH A . D 4 HOH 50 350 345 HOH HOH A . D 4 HOH 51 351 306 HOH HOH A . D 4 HOH 52 352 383 HOH HOH A . D 4 HOH 53 353 399 HOH HOH A . D 4 HOH 54 354 329 HOH HOH A . D 4 HOH 55 355 324 HOH HOH A . D 4 HOH 56 356 304 HOH HOH A . D 4 HOH 57 357 327 HOH HOH A . D 4 HOH 58 358 336 HOH HOH A . D 4 HOH 59 359 427 HOH HOH A . D 4 HOH 60 360 333 HOH HOH A . D 4 HOH 61 361 302 HOH HOH A . D 4 HOH 62 362 314 HOH HOH A . D 4 HOH 63 363 358 HOH HOH A . D 4 HOH 64 364 308 HOH HOH A . D 4 HOH 65 365 313 HOH HOH A . D 4 HOH 66 366 395 HOH HOH A . D 4 HOH 67 367 361 HOH HOH A . D 4 HOH 68 368 389 HOH HOH A . D 4 HOH 69 369 362 HOH HOH A . D 4 HOH 70 370 359 HOH HOH A . D 4 HOH 71 371 360 HOH HOH A . D 4 HOH 72 372 355 HOH HOH A . D 4 HOH 73 373 343 HOH HOH A . D 4 HOH 74 374 398 HOH HOH A . D 4 HOH 75 375 351 HOH HOH A . D 4 HOH 76 376 311 HOH HOH A . D 4 HOH 77 377 382 HOH HOH A . D 4 HOH 78 378 394 HOH HOH A . D 4 HOH 79 379 354 HOH HOH A . D 4 HOH 80 380 325 HOH HOH A . D 4 HOH 81 381 335 HOH HOH A . D 4 HOH 82 382 338 HOH HOH A . D 4 HOH 83 383 391 HOH HOH A . D 4 HOH 84 384 357 HOH HOH A . D 4 HOH 85 385 366 HOH HOH A . D 4 HOH 86 386 349 HOH HOH A . D 4 HOH 87 387 396 HOH HOH A . D 4 HOH 88 388 375 HOH HOH A . D 4 HOH 89 389 397 HOH HOH A . D 4 HOH 90 390 380 HOH HOH A . D 4 HOH 91 391 310 HOH HOH A . D 4 HOH 92 392 408 HOH HOH A . D 4 HOH 93 393 317 HOH HOH A . D 4 HOH 94 394 425 HOH HOH A . D 4 HOH 95 395 376 HOH HOH A . D 4 HOH 96 396 356 HOH HOH A . D 4 HOH 97 397 388 HOH HOH A . D 4 HOH 98 398 426 HOH HOH A . D 4 HOH 99 399 405 HOH HOH A . D 4 HOH 100 400 432 HOH HOH A . D 4 HOH 101 401 428 HOH HOH A . D 4 HOH 102 402 429 HOH HOH A . D 4 HOH 103 403 386 HOH HOH A . D 4 HOH 104 404 323 HOH HOH A . D 4 HOH 105 405 378 HOH HOH A . D 4 HOH 106 406 420 HOH HOH A . D 4 HOH 107 407 414 HOH HOH A . D 4 HOH 108 408 407 HOH HOH A . D 4 HOH 109 409 423 HOH HOH A . D 4 HOH 110 410 312 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'point symmetry operation' ? ? 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 1.000000 0.000000 0.000000 0.00000 3 'point symmetry operation' ? ? 0.000000 0.000000 1.000000 0.00000 1.000000 0.000000 0.000000 0.00000 0.000000 1.000000 0.000000 0.00000 4 'point symmetry operation' ? ? 0.000000 1.000000 0.000000 0.00000 -1.000000 0.000000 0.000000 136.49921 0.000000 0.000000 1.000000 0.00000 5 'point symmetry operation' ? ? -1.000000 0.000000 0.000000 136.49921 0.000000 -1.000000 0.000000 136.49921 0.000000 0.000000 1.000000 0.00000 6 'point symmetry operation' ? ? 0.000000 -1.000000 0.000000 136.49921 1.000000 0.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 7 'point symmetry operation' ? ? -1.000000 0.000000 0.000000 136.49921 0.000000 0.000000 1.000000 0.00000 0.000000 1.000000 0.000000 0.00000 8 'point symmetry operation' ? ? 0.000000 0.000000 1.000000 0.00000 0.000000 1.000000 0.000000 0.00000 -1.000000 0.000000 0.000000 136.49921 9 'point symmetry operation' ? ? 1.000000 0.000000 0.000000 0.00000 0.000000 0.000000 -1.000000 136.49921 0.000000 1.000000 0.000000 0.00000 10 'point symmetry operation' ? ? 0.000000 0.000000 1.000000 0.00000 0.000000 -1.000000 0.000000 136.49921 1.000000 0.000000 0.000000 0.00000 11 'point symmetry operation' ? ? 0.000000 -1.000000 0.000000 136.49921 0.000000 0.000000 1.000000 0.00000 -1.000000 0.000000 0.000000 136.49921 12 'point symmetry operation' ? ? 0.000000 0.000000 1.000000 0.00000 -1.000000 0.000000 0.000000 136.49921 0.000000 -1.000000 0.000000 136.49921 13 'point symmetry operation' ? ? 0.000000 0.000000 -1.000000 136.49921 -1.000000 0.000000 0.000000 136.49921 0.000000 1.000000 0.000000 0.00000 14 'point symmetry operation' ? ? 0.000000 -1.000000 0.000000 136.49921 0.000000 0.000000 -1.000000 136.49921 1.000000 0.000000 0.000000 0.00000 15 'point symmetry operation' ? ? 1.000000 0.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 0.000000 -1.000000 0.000000 136.49921 16 'point symmetry operation' ? ? 0.000000 0.000000 -1.000000 136.49921 0.000000 1.000000 0.000000 0.00000 1.000000 0.000000 0.000000 0.00000 17 'point symmetry operation' ? ? 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 -1.000000 136.49921 -1.000000 0.000000 0.000000 136.49921 18 'point symmetry operation' ? ? 0.000000 0.000000 -1.000000 136.49921 0.000000 -1.000000 0.000000 136.49921 -1.000000 0.000000 0.000000 136.49921 19 'point symmetry operation' ? ? -1.000000 0.000000 0.000000 136.49921 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 -1.000000 136.49921 20 'point symmetry operation' ? ? 0.000000 1.000000 0.000000 0.00000 1.000000 0.000000 0.000000 0.00000 0.000000 0.000000 -1.000000 136.49921 21 'point symmetry operation' ? ? 1.000000 0.000000 0.000000 0.00000 0.000000 -1.000000 0.000000 136.49921 0.000000 0.000000 -1.000000 136.49921 22 'point symmetry operation' ? ? -1.000000 0.000000 0.000000 136.49921 0.000000 0.000000 -1.000000 136.49921 0.000000 -1.000000 0.000000 136.49921 23 'point symmetry operation' ? ? 0.000000 0.000000 -1.000000 136.49921 1.000000 0.000000 0.000000 0.00000 0.000000 -1.000000 0.000000 136.49921 24 'point symmetry operation' ? ? 0.000000 -1.000000 0.000000 136.49921 -1.000000 0.000000 0.000000 136.49921 0.000000 0.000000 -1.000000 136.49921 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 23 ? A GLU 27 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 OE1 ? A GLU 58 ? A GLU 62 ? 1_555 74.6 ? 2 OE2 ? A GLU 23 ? A GLU 27 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 ND1 A A HIS 61 ? A HIS 65 ? 1_555 117.2 ? 3 OE1 ? A GLU 58 ? A GLU 62 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 ND1 A A HIS 61 ? A HIS 65 ? 1_555 103.6 ? 4 OE2 ? A GLU 23 ? A GLU 27 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 O ? D HOH . ? A HOH 308 ? 1_555 119.9 ? 5 OE1 ? A GLU 58 ? A GLU 62 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 O ? D HOH . ? A HOH 308 ? 1_555 76.9 ? 6 ND1 A A HIS 61 ? A HIS 65 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 O ? D HOH . ? A HOH 308 ? 1_555 120.4 ? 7 OE2 ? A GLU 23 ? A GLU 27 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 O ? D HOH . ? A HOH 312 ? 1_555 94.7 ? 8 OE1 ? A GLU 58 ? A GLU 62 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 O ? D HOH . ? A HOH 312 ? 1_555 150.7 ? 9 ND1 A A HIS 61 ? A HIS 65 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 O ? D HOH . ? A HOH 312 ? 1_555 105.5 ? 10 O ? D HOH . ? A HOH 308 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 O ? D HOH . ? A HOH 312 ? 1_555 85.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-10-28 2 'Structure model' 1 1 2020-11-04 3 'Structure model' 1 2 2020-11-18 4 'Structure model' 1 3 2023-06-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 3 'Structure model' '_citation_author.identifier_ORCID' 14 4 'Structure model' '_database_2.pdbx_DOI' 15 4 'Structure model' '_database_2.pdbx_database_accession' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0272 _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7A4M _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7A4M _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7A4M _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 363126 _em_3d_reconstruction.resolution 1.22 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details '20mM HEPES pH 7.5 150mM NaCl' _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Mouse heavy-chain apoferritin' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 7A4M _em_image_scans.id 1 _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 7A4M _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 900 _em_imaging.nominal_defocus_min 300 _em_imaging.nominal_magnification 270000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7A4M _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7A4M _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7A4M _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry O # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 HD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HIS _pdbx_validate_close_contact.auth_seq_id_1 13 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 H _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASP _pdbx_validate_close_contact.auth_seq_id_2 15 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.07 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 46 ? ? -124.43 -61.84 2 1 GLU A 94 ? A 76.31 -52.26 3 1 GLU A 94 ? B 79.59 -48.38 4 1 TYR A 137 ? ? -120.36 -52.21 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.5 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 10090 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Mus musculus' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain 'BL21(DE3)' # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.1.13 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? REFMAC 5.8.0272 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 11 CLASSIFICATION ? RELION 3.1 1 ? ? 12 RECONSTRUCTION ? RELION 3.1 1 ? ? 13 'MODEL REFINEMENT' ? REFMAC 5.8.0272 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_UP_A025_1012 1 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MR/L009609/1 2 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_UP_1201/15 3 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_UP_A025_1013 4 'Wellcome Trust' 'United Kingdom' 206171/Z/17/Z 5 'Wellcome Trust' 'United Kingdom' '202905/Z/16/Z)' 6 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 'ZINC ION' ZN 4 water HOH #