data_7ABK # _entry.id 7ABK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.347 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7ABK pdb_00007abk 10.2210/pdb7abk/pdb WWPDB D_1292111119 ? ? EMDB EMD-11698 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Helical structure of PspA' _pdbx_database_related.db_id EMD-11698 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7ABK _pdbx_database_status.recvd_initial_deposition_date 2020-09-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Junglas, B.' 1 0000-0001-9348-3379 'Huber, S.T.' 2 0000-0003-3721-5104 'Mann, D.' 3 0000-0002-9106-9358 'Heidler, T.' 4 0000-0002-5997-3945 'Clarke, M.' 5 0000-0002-9658-4308 'Schneider, D.' 6 0000-0002-0163-6137 'Sachse, C.' 7 0000-0002-1168-5143 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 184 _citation.language ? _citation.page_first 3674 _citation.page_last 3688.e18 _citation.title 'PspA adopts an ESCRT-III-like fold and remodels bacterial membranes.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2021.05.042 _citation.pdbx_database_id_PubMed 34166616 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Junglas, B.' 1 ? primary 'Huber, S.T.' 2 ? primary 'Heidler, T.' 3 ? primary 'Schlosser, L.' 4 ? primary 'Mann, D.' 5 ? primary 'Hennig, R.' 6 ? primary 'Clarke, M.' 7 ? primary 'Hellmann, N.' 8 ? primary 'Schneider, D.' 9 ? primary 'Sachse, C.' 10 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7ABK _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ABK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Chloroplast membrane-associated 30 kD protein' _entity.formula_weight 28260.816 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGHHHHHHHHHSSGHIDDDDKHMELFNRVGRVLKSQLTHWQQQQEAPEDLLERLLGEMELELIELRRALAQTIATFKSTE RQRDAQQLIAQRWYEKAQAALDRGNEQLAREALGQRQSYQSHTEALGKSLGEQRALVEQVRGQLQKLERKYLELKSQKNL YLARLKSAIAAQKIEEIAGNLDNASASSLFERIETKILELEAERELLNPPPSPLDKKFEQWEEQQAVEATLAAMKARRSL PPPSS ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHHHHSSGHIDDDDKHMELFNRVGRVLKSQLTHWQQQQEAPEDLLERLLGEMELELIELRRALAQTIATFKSTE RQRDAQQLIAQRWYEKAQAALDRGNEQLAREALGQRQSYQSHTEALGKSLGEQRALVEQVRGQLQKLERKYLELKSQKNL YLARLKSAIAAQKIEEIAGNLDNASASSLFERIETKILELEAERELLNPPPSPLDKKFEQWEEQQAVEATLAAMKARRSL PPPSS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 SER n 1 13 SER n 1 14 GLY n 1 15 HIS n 1 16 ILE n 1 17 ASP n 1 18 ASP n 1 19 ASP n 1 20 ASP n 1 21 LYS n 1 22 HIS n 1 23 MET n 1 24 GLU n 1 25 LEU n 1 26 PHE n 1 27 ASN n 1 28 ARG n 1 29 VAL n 1 30 GLY n 1 31 ARG n 1 32 VAL n 1 33 LEU n 1 34 LYS n 1 35 SER n 1 36 GLN n 1 37 LEU n 1 38 THR n 1 39 HIS n 1 40 TRP n 1 41 GLN n 1 42 GLN n 1 43 GLN n 1 44 GLN n 1 45 GLU n 1 46 ALA n 1 47 PRO n 1 48 GLU n 1 49 ASP n 1 50 LEU n 1 51 LEU n 1 52 GLU n 1 53 ARG n 1 54 LEU n 1 55 LEU n 1 56 GLY n 1 57 GLU n 1 58 MET n 1 59 GLU n 1 60 LEU n 1 61 GLU n 1 62 LEU n 1 63 ILE n 1 64 GLU n 1 65 LEU n 1 66 ARG n 1 67 ARG n 1 68 ALA n 1 69 LEU n 1 70 ALA n 1 71 GLN n 1 72 THR n 1 73 ILE n 1 74 ALA n 1 75 THR n 1 76 PHE n 1 77 LYS n 1 78 SER n 1 79 THR n 1 80 GLU n 1 81 ARG n 1 82 GLN n 1 83 ARG n 1 84 ASP n 1 85 ALA n 1 86 GLN n 1 87 GLN n 1 88 LEU n 1 89 ILE n 1 90 ALA n 1 91 GLN n 1 92 ARG n 1 93 TRP n 1 94 TYR n 1 95 GLU n 1 96 LYS n 1 97 ALA n 1 98 GLN n 1 99 ALA n 1 100 ALA n 1 101 LEU n 1 102 ASP n 1 103 ARG n 1 104 GLY n 1 105 ASN n 1 106 GLU n 1 107 GLN n 1 108 LEU n 1 109 ALA n 1 110 ARG n 1 111 GLU n 1 112 ALA n 1 113 LEU n 1 114 GLY n 1 115 GLN n 1 116 ARG n 1 117 GLN n 1 118 SER n 1 119 TYR n 1 120 GLN n 1 121 SER n 1 122 HIS n 1 123 THR n 1 124 GLU n 1 125 ALA n 1 126 LEU n 1 127 GLY n 1 128 LYS n 1 129 SER n 1 130 LEU n 1 131 GLY n 1 132 GLU n 1 133 GLN n 1 134 ARG n 1 135 ALA n 1 136 LEU n 1 137 VAL n 1 138 GLU n 1 139 GLN n 1 140 VAL n 1 141 ARG n 1 142 GLY n 1 143 GLN n 1 144 LEU n 1 145 GLN n 1 146 LYS n 1 147 LEU n 1 148 GLU n 1 149 ARG n 1 150 LYS n 1 151 TYR n 1 152 LEU n 1 153 GLU n 1 154 LEU n 1 155 LYS n 1 156 SER n 1 157 GLN n 1 158 LYS n 1 159 ASN n 1 160 LEU n 1 161 TYR n 1 162 LEU n 1 163 ALA n 1 164 ARG n 1 165 LEU n 1 166 LYS n 1 167 SER n 1 168 ALA n 1 169 ILE n 1 170 ALA n 1 171 ALA n 1 172 GLN n 1 173 LYS n 1 174 ILE n 1 175 GLU n 1 176 GLU n 1 177 ILE n 1 178 ALA n 1 179 GLY n 1 180 ASN n 1 181 LEU n 1 182 ASP n 1 183 ASN n 1 184 ALA n 1 185 SER n 1 186 ALA n 1 187 SER n 1 188 SER n 1 189 LEU n 1 190 PHE n 1 191 GLU n 1 192 ARG n 1 193 ILE n 1 194 GLU n 1 195 THR n 1 196 LYS n 1 197 ILE n 1 198 LEU n 1 199 GLU n 1 200 LEU n 1 201 GLU n 1 202 ALA n 1 203 GLU n 1 204 ARG n 1 205 GLU n 1 206 LEU n 1 207 LEU n 1 208 ASN n 1 209 PRO n 1 210 PRO n 1 211 PRO n 1 212 SER n 1 213 PRO n 1 214 LEU n 1 215 ASP n 1 216 LYS n 1 217 LYS n 1 218 PHE n 1 219 GLU n 1 220 GLN n 1 221 TRP n 1 222 GLU n 1 223 GLU n 1 224 GLN n 1 225 GLN n 1 226 ALA n 1 227 VAL n 1 228 GLU n 1 229 ALA n 1 230 THR n 1 231 LEU n 1 232 ALA n 1 233 ALA n 1 234 MET n 1 235 LYS n 1 236 ALA n 1 237 ARG n 1 238 ARG n 1 239 SER n 1 240 LEU n 1 241 PRO n 1 242 PRO n 1 243 PRO n 1 244 SER n 1 245 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 245 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene im30 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'PCC 6803 / Kazusa' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Synechocystis sp. (strain PCC 6803 / Kazusa)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1111708 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pRSET6 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code P74717_SYNY3 _struct_ref.pdbx_db_accession P74717 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MELFNRVGRVLKSQLTHWQQQQEAPEDLLERLLGEMELELIELRRALAQTIATFKSTERQRDAQQLIAQRWYEKAQAALD RGNEQLAREALGQRQSYQSHTEALGKSLGEQRALVEQVRGQLQKLERKYLELKSQKNLYLARLKSAIAAQKIEEIAGNLD NASASSLFERIETKILELEAERELLNPPPSPLDKKFEQWEEQQAVEATLAAMKARRSLPPPSS ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7ABK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 23 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 245 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P74717 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 223 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 223 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7ABK MET A 1 ? UNP P74717 ? ? 'initiating methionine' -21 1 1 7ABK GLY A 2 ? UNP P74717 ? ? 'expression tag' -20 2 1 7ABK HIS A 3 ? UNP P74717 ? ? 'expression tag' -19 3 1 7ABK HIS A 4 ? UNP P74717 ? ? 'expression tag' -18 4 1 7ABK HIS A 5 ? UNP P74717 ? ? 'expression tag' -17 5 1 7ABK HIS A 6 ? UNP P74717 ? ? 'expression tag' -16 6 1 7ABK HIS A 7 ? UNP P74717 ? ? 'expression tag' -15 7 1 7ABK HIS A 8 ? UNP P74717 ? ? 'expression tag' -14 8 1 7ABK HIS A 9 ? UNP P74717 ? ? 'expression tag' -13 9 1 7ABK HIS A 10 ? UNP P74717 ? ? 'expression tag' -12 10 1 7ABK HIS A 11 ? UNP P74717 ? ? 'expression tag' -11 11 1 7ABK SER A 12 ? UNP P74717 ? ? 'expression tag' -10 12 1 7ABK SER A 13 ? UNP P74717 ? ? 'expression tag' -9 13 1 7ABK GLY A 14 ? UNP P74717 ? ? 'expression tag' -8 14 1 7ABK HIS A 15 ? UNP P74717 ? ? 'expression tag' -7 15 1 7ABK ILE A 16 ? UNP P74717 ? ? 'expression tag' -6 16 1 7ABK ASP A 17 ? UNP P74717 ? ? 'expression tag' -5 17 1 7ABK ASP A 18 ? UNP P74717 ? ? 'expression tag' -4 18 1 7ABK ASP A 19 ? UNP P74717 ? ? 'expression tag' -3 19 1 7ABK ASP A 20 ? UNP P74717 ? ? 'expression tag' -2 20 1 7ABK LYS A 21 ? UNP P74717 ? ? 'expression tag' -1 21 1 7ABK HIS A 22 ? UNP P74717 ? ? 'expression tag' 0 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7ABK _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7ABK _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 7950 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.528 ? 10670 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 8.364 ? 5065 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.031 ? 1180 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 1420 ? f_plane_restr ? ? # _struct.entry_id 7ABK _struct.title 'Helical structure of PspA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7ABK _struct_keywords.text 'PspA, IM30, Vipp1, ESCRT-III, helical reconstruction, Cryo-EM, membrane remodeling, LIPID BINDING PROTEIN' _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 46 ? ASP A 102 ? ALA A 24 ASP A 80 1 ? 57 HELX_P HELX_P2 AA2 ASN A 105 ? ILE A 177 ? ASN A 83 ILE A 155 1 ? 73 HELX_P HELX_P3 AA3 GLU A 191 ? ASN A 208 ? GLU A 169 ASN A 186 1 ? 18 HELX_P HELX_P4 AA4 SER A 212 ? ARG A 238 ? SER A 190 ARG A 216 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 7ABK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -21 ? ? ? A . n A 1 2 GLY 2 -20 ? ? ? A . n A 1 3 HIS 3 -19 ? ? ? A . n A 1 4 HIS 4 -18 ? ? ? A . n A 1 5 HIS 5 -17 ? ? ? A . n A 1 6 HIS 6 -16 ? ? ? A . n A 1 7 HIS 7 -15 ? ? ? A . n A 1 8 HIS 8 -14 ? ? ? A . n A 1 9 HIS 9 -13 ? ? ? A . n A 1 10 HIS 10 -12 ? ? ? A . n A 1 11 HIS 11 -11 ? ? ? A . n A 1 12 SER 12 -10 ? ? ? A . n A 1 13 SER 13 -9 ? ? ? A . n A 1 14 GLY 14 -8 ? ? ? A . n A 1 15 HIS 15 -7 ? ? ? A . n A 1 16 ILE 16 -6 ? ? ? A . n A 1 17 ASP 17 -5 ? ? ? A . n A 1 18 ASP 18 -4 ? ? ? A . n A 1 19 ASP 19 -3 ? ? ? A . n A 1 20 ASP 20 -2 ? ? ? A . n A 1 21 LYS 21 -1 ? ? ? A . n A 1 22 HIS 22 0 ? ? ? A . n A 1 23 MET 23 1 ? ? ? A . n A 1 24 GLU 24 2 ? ? ? A . n A 1 25 LEU 25 3 ? ? ? A . n A 1 26 PHE 26 4 ? ? ? A . n A 1 27 ASN 27 5 ? ? ? A . n A 1 28 ARG 28 6 ? ? ? A . n A 1 29 VAL 29 7 ? ? ? A . n A 1 30 GLY 30 8 ? ? ? A . n A 1 31 ARG 31 9 ? ? ? A . n A 1 32 VAL 32 10 ? ? ? A . n A 1 33 LEU 33 11 ? ? ? A . n A 1 34 LYS 34 12 ? ? ? A . n A 1 35 SER 35 13 ? ? ? A . n A 1 36 GLN 36 14 ? ? ? A . n A 1 37 LEU 37 15 ? ? ? A . n A 1 38 THR 38 16 ? ? ? A . n A 1 39 HIS 39 17 ? ? ? A . n A 1 40 TRP 40 18 ? ? ? A . n A 1 41 GLN 41 19 ? ? ? A . n A 1 42 GLN 42 20 ? ? ? A . n A 1 43 GLN 43 21 ? ? ? A . n A 1 44 GLN 44 22 22 GLN GLN A . n A 1 45 GLU 45 23 23 GLU GLU A . n A 1 46 ALA 46 24 24 ALA ALA A . n A 1 47 PRO 47 25 25 PRO PRO A . n A 1 48 GLU 48 26 26 GLU GLU A . n A 1 49 ASP 49 27 27 ASP ASP A . n A 1 50 LEU 50 28 28 LEU LEU A . n A 1 51 LEU 51 29 29 LEU LEU A . n A 1 52 GLU 52 30 30 GLU GLU A . n A 1 53 ARG 53 31 31 ARG ARG A . n A 1 54 LEU 54 32 32 LEU LEU A . n A 1 55 LEU 55 33 33 LEU LEU A . n A 1 56 GLY 56 34 34 GLY GLY A . n A 1 57 GLU 57 35 35 GLU GLU A . n A 1 58 MET 58 36 36 MET MET A . n A 1 59 GLU 59 37 37 GLU GLU A . n A 1 60 LEU 60 38 38 LEU LEU A . n A 1 61 GLU 61 39 39 GLU GLU A . n A 1 62 LEU 62 40 40 LEU LEU A . n A 1 63 ILE 63 41 41 ILE ILE A . n A 1 64 GLU 64 42 42 GLU GLU A . n A 1 65 LEU 65 43 43 LEU LEU A . n A 1 66 ARG 66 44 44 ARG ARG A . n A 1 67 ARG 67 45 45 ARG ARG A . n A 1 68 ALA 68 46 46 ALA ALA A . n A 1 69 LEU 69 47 47 LEU LEU A . n A 1 70 ALA 70 48 48 ALA ALA A . n A 1 71 GLN 71 49 49 GLN GLN A . n A 1 72 THR 72 50 50 THR THR A . n A 1 73 ILE 73 51 51 ILE ILE A . n A 1 74 ALA 74 52 52 ALA ALA A . n A 1 75 THR 75 53 53 THR THR A . n A 1 76 PHE 76 54 54 PHE PHE A . n A 1 77 LYS 77 55 55 LYS LYS A . n A 1 78 SER 78 56 56 SER SER A . n A 1 79 THR 79 57 57 THR THR A . n A 1 80 GLU 80 58 58 GLU GLU A . n A 1 81 ARG 81 59 59 ARG ARG A . n A 1 82 GLN 82 60 60 GLN GLN A . n A 1 83 ARG 83 61 61 ARG ARG A . n A 1 84 ASP 84 62 62 ASP ASP A . n A 1 85 ALA 85 63 63 ALA ALA A . n A 1 86 GLN 86 64 64 GLN GLN A . n A 1 87 GLN 87 65 65 GLN GLN A . n A 1 88 LEU 88 66 66 LEU LEU A . n A 1 89 ILE 89 67 67 ILE ILE A . n A 1 90 ALA 90 68 68 ALA ALA A . n A 1 91 GLN 91 69 69 GLN GLN A . n A 1 92 ARG 92 70 70 ARG ARG A . n A 1 93 TRP 93 71 71 TRP TRP A . n A 1 94 TYR 94 72 72 TYR TYR A . n A 1 95 GLU 95 73 73 GLU GLU A . n A 1 96 LYS 96 74 74 LYS LYS A . n A 1 97 ALA 97 75 75 ALA ALA A . n A 1 98 GLN 98 76 76 GLN GLN A . n A 1 99 ALA 99 77 77 ALA ALA A . n A 1 100 ALA 100 78 78 ALA ALA A . n A 1 101 LEU 101 79 79 LEU LEU A . n A 1 102 ASP 102 80 80 ASP ASP A . n A 1 103 ARG 103 81 81 ARG ARG A . n A 1 104 GLY 104 82 82 GLY GLY A . n A 1 105 ASN 105 83 83 ASN ASN A . n A 1 106 GLU 106 84 84 GLU GLU A . n A 1 107 GLN 107 85 85 GLN GLN A . n A 1 108 LEU 108 86 86 LEU LEU A . n A 1 109 ALA 109 87 87 ALA ALA A . n A 1 110 ARG 110 88 88 ARG ARG A . n A 1 111 GLU 111 89 89 GLU GLU A . n A 1 112 ALA 112 90 90 ALA ALA A . n A 1 113 LEU 113 91 91 LEU LEU A . n A 1 114 GLY 114 92 92 GLY GLY A . n A 1 115 GLN 115 93 93 GLN GLN A . n A 1 116 ARG 116 94 94 ARG ARG A . n A 1 117 GLN 117 95 95 GLN GLN A . n A 1 118 SER 118 96 96 SER SER A . n A 1 119 TYR 119 97 97 TYR TYR A . n A 1 120 GLN 120 98 98 GLN GLN A . n A 1 121 SER 121 99 99 SER SER A . n A 1 122 HIS 122 100 100 HIS HIS A . n A 1 123 THR 123 101 101 THR THR A . n A 1 124 GLU 124 102 102 GLU GLU A . n A 1 125 ALA 125 103 103 ALA ALA A . n A 1 126 LEU 126 104 104 LEU LEU A . n A 1 127 GLY 127 105 105 GLY GLY A . n A 1 128 LYS 128 106 106 LYS LYS A . n A 1 129 SER 129 107 107 SER SER A . n A 1 130 LEU 130 108 108 LEU LEU A . n A 1 131 GLY 131 109 109 GLY GLY A . n A 1 132 GLU 132 110 110 GLU GLU A . n A 1 133 GLN 133 111 111 GLN GLN A . n A 1 134 ARG 134 112 112 ARG ARG A . n A 1 135 ALA 135 113 113 ALA ALA A . n A 1 136 LEU 136 114 114 LEU LEU A . n A 1 137 VAL 137 115 115 VAL VAL A . n A 1 138 GLU 138 116 116 GLU GLU A . n A 1 139 GLN 139 117 117 GLN GLN A . n A 1 140 VAL 140 118 118 VAL VAL A . n A 1 141 ARG 141 119 119 ARG ARG A . n A 1 142 GLY 142 120 120 GLY GLY A . n A 1 143 GLN 143 121 121 GLN GLN A . n A 1 144 LEU 144 122 122 LEU LEU A . n A 1 145 GLN 145 123 123 GLN GLN A . n A 1 146 LYS 146 124 124 LYS LYS A . n A 1 147 LEU 147 125 125 LEU LEU A . n A 1 148 GLU 148 126 126 GLU GLU A . n A 1 149 ARG 149 127 127 ARG ARG A . n A 1 150 LYS 150 128 128 LYS LYS A . n A 1 151 TYR 151 129 129 TYR TYR A . n A 1 152 LEU 152 130 130 LEU LEU A . n A 1 153 GLU 153 131 131 GLU GLU A . n A 1 154 LEU 154 132 132 LEU LEU A . n A 1 155 LYS 155 133 133 LYS LYS A . n A 1 156 SER 156 134 134 SER SER A . n A 1 157 GLN 157 135 135 GLN GLN A . n A 1 158 LYS 158 136 136 LYS LYS A . n A 1 159 ASN 159 137 137 ASN ASN A . n A 1 160 LEU 160 138 138 LEU LEU A . n A 1 161 TYR 161 139 139 TYR TYR A . n A 1 162 LEU 162 140 140 LEU LEU A . n A 1 163 ALA 163 141 141 ALA ALA A . n A 1 164 ARG 164 142 142 ARG ARG A . n A 1 165 LEU 165 143 143 LEU LEU A . n A 1 166 LYS 166 144 144 LYS LYS A . n A 1 167 SER 167 145 145 SER SER A . n A 1 168 ALA 168 146 146 ALA ALA A . n A 1 169 ILE 169 147 147 ILE ILE A . n A 1 170 ALA 170 148 148 ALA ALA A . n A 1 171 ALA 171 149 149 ALA ALA A . n A 1 172 GLN 172 150 150 GLN GLN A . n A 1 173 LYS 173 151 151 LYS LYS A . n A 1 174 ILE 174 152 152 ILE ILE A . n A 1 175 GLU 175 153 153 GLU GLU A . n A 1 176 GLU 176 154 154 GLU GLU A . n A 1 177 ILE 177 155 155 ILE ILE A . n A 1 178 ALA 178 156 156 ALA ALA A . n A 1 179 GLY 179 157 157 GLY GLY A . n A 1 180 ASN 180 158 158 ASN ASN A . n A 1 181 LEU 181 159 159 LEU LEU A . n A 1 182 ASP 182 160 160 ASP ALA A . n A 1 183 ASN 183 161 161 ASN ASN A . n A 1 184 ALA 184 162 162 ALA ALA A . n A 1 185 SER 185 163 163 SER SER A . n A 1 186 ALA 186 164 164 ALA ALA A . n A 1 187 SER 187 165 165 SER SER A . n A 1 188 SER 188 166 166 SER SER A . n A 1 189 LEU 189 167 167 LEU LEU A . n A 1 190 PHE 190 168 168 PHE PHE A . n A 1 191 GLU 191 169 169 GLU GLU A . n A 1 192 ARG 192 170 170 ARG ARG A . n A 1 193 ILE 193 171 171 ILE ILE A . n A 1 194 GLU 194 172 172 GLU GLU A . n A 1 195 THR 195 173 173 THR THR A . n A 1 196 LYS 196 174 174 LYS LYS A . n A 1 197 ILE 197 175 175 ILE ILE A . n A 1 198 LEU 198 176 176 LEU LEU A . n A 1 199 GLU 199 177 177 GLU GLU A . n A 1 200 LEU 200 178 178 LEU LEU A . n A 1 201 GLU 201 179 179 GLU GLU A . n A 1 202 ALA 202 180 180 ALA ALA A . n A 1 203 GLU 203 181 181 GLU GLU A . n A 1 204 ARG 204 182 182 ARG ARG A . n A 1 205 GLU 205 183 183 GLU GLU A . n A 1 206 LEU 206 184 184 LEU LEU A . n A 1 207 LEU 207 185 185 LEU LEU A . n A 1 208 ASN 208 186 186 ASN ASN A . n A 1 209 PRO 209 187 187 PRO PRO A . n A 1 210 PRO 210 188 188 PRO PRO A . n A 1 211 PRO 211 189 189 PRO PRO A . n A 1 212 SER 212 190 190 SER SER A . n A 1 213 PRO 213 191 191 PRO PRO A . n A 1 214 LEU 214 192 192 LEU LEU A . n A 1 215 ASP 215 193 193 ASP ASP A . n A 1 216 LYS 216 194 194 LYS LYS A . n A 1 217 LYS 217 195 195 LYS LYS A . n A 1 218 PHE 218 196 196 PHE PHE A . n A 1 219 GLU 219 197 197 GLU GLU A . n A 1 220 GLN 220 198 198 GLN GLN A . n A 1 221 TRP 221 199 199 TRP TRP A . n A 1 222 GLU 222 200 200 GLU GLU A . n A 1 223 GLU 223 201 201 GLU GLU A . n A 1 224 GLN 224 202 202 GLN GLN A . n A 1 225 GLN 225 203 203 GLN GLN A . n A 1 226 ALA 226 204 204 ALA ALA A . n A 1 227 VAL 227 205 205 VAL VAL A . n A 1 228 GLU 228 206 206 GLU GLU A . n A 1 229 ALA 229 207 207 ALA ALA A . n A 1 230 THR 230 208 208 THR THR A . n A 1 231 LEU 231 209 209 LEU LEU A . n A 1 232 ALA 232 210 210 ALA ALA A . n A 1 233 ALA 233 211 211 ALA ALA A . n A 1 234 MET 234 212 212 MET MET A . n A 1 235 LYS 235 213 213 LYS LYS A . n A 1 236 ALA 236 214 214 ALA ALA A . n A 1 237 ARG 237 215 215 ARG ARG A . n A 1 238 ARG 238 216 216 ARG ARG A . n A 1 239 SER 239 217 217 SER SER A . n A 1 240 LEU 240 218 ? ? ? A . n A 1 241 PRO 241 219 ? ? ? A . n A 1 242 PRO 242 220 ? ? ? A . n A 1 243 PRO 243 221 ? ? ? A . n A 1 244 SER 244 222 ? ? ? A . n A 1 245 SER 245 223 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 16400 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-08-04 2 'Structure model' 1 1 2021-08-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.16_3549: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 7ABK _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7ABK _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 19900 _em_3d_reconstruction.resolution 3.6 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.6 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Helical filament assembly of PspA' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7ABK _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'TFS TALOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 2300 _em_imaging.nominal_defocus_min 200 _em_imaging.nominal_magnification 100000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'Pelco easiGlow' _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 283.15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'Quantifoil R1.2/1.3 Cu200 grids' _em_vitrification.humidity 90 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7ABK _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7ABK _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 167 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 68.70 _pdbx_validate_torsion.psi -8.07 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 160 ? CG ? A ASP 182 CG 2 1 Y 1 A ASP 160 ? OD1 ? A ASP 182 OD1 3 1 Y 1 A ASP 160 ? OD2 ? A ASP 182 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -21 ? A MET 1 2 1 Y 1 A GLY -20 ? A GLY 2 3 1 Y 1 A HIS -19 ? A HIS 3 4 1 Y 1 A HIS -18 ? A HIS 4 5 1 Y 1 A HIS -17 ? A HIS 5 6 1 Y 1 A HIS -16 ? A HIS 6 7 1 Y 1 A HIS -15 ? A HIS 7 8 1 Y 1 A HIS -14 ? A HIS 8 9 1 Y 1 A HIS -13 ? A HIS 9 10 1 Y 1 A HIS -12 ? A HIS 10 11 1 Y 1 A HIS -11 ? A HIS 11 12 1 Y 1 A SER -10 ? A SER 12 13 1 Y 1 A SER -9 ? A SER 13 14 1 Y 1 A GLY -8 ? A GLY 14 15 1 Y 1 A HIS -7 ? A HIS 15 16 1 Y 1 A ILE -6 ? A ILE 16 17 1 Y 1 A ASP -5 ? A ASP 17 18 1 Y 1 A ASP -4 ? A ASP 18 19 1 Y 1 A ASP -3 ? A ASP 19 20 1 Y 1 A ASP -2 ? A ASP 20 21 1 Y 1 A LYS -1 ? A LYS 21 22 1 Y 1 A HIS 0 ? A HIS 22 23 1 Y 1 A MET 1 ? A MET 23 24 1 Y 1 A GLU 2 ? A GLU 24 25 1 Y 1 A LEU 3 ? A LEU 25 26 1 Y 1 A PHE 4 ? A PHE 26 27 1 Y 1 A ASN 5 ? A ASN 27 28 1 Y 1 A ARG 6 ? A ARG 28 29 1 Y 1 A VAL 7 ? A VAL 29 30 1 Y 1 A GLY 8 ? A GLY 30 31 1 Y 1 A ARG 9 ? A ARG 31 32 1 Y 1 A VAL 10 ? A VAL 32 33 1 Y 1 A LEU 11 ? A LEU 33 34 1 Y 1 A LYS 12 ? A LYS 34 35 1 Y 1 A SER 13 ? A SER 35 36 1 Y 1 A GLN 14 ? A GLN 36 37 1 Y 1 A LEU 15 ? A LEU 37 38 1 Y 1 A THR 16 ? A THR 38 39 1 Y 1 A HIS 17 ? A HIS 39 40 1 Y 1 A TRP 18 ? A TRP 40 41 1 Y 1 A GLN 19 ? A GLN 41 42 1 Y 1 A GLN 20 ? A GLN 42 43 1 Y 1 A GLN 21 ? A GLN 43 44 1 Y 1 A LEU 218 ? A LEU 240 45 1 Y 1 A PRO 219 ? A PRO 241 46 1 Y 1 A PRO 220 ? A PRO 242 47 1 Y 1 A PRO 221 ? A PRO 243 48 1 Y 1 A SER 222 ? A SER 244 49 1 Y 1 A SER 223 ? A SER 245 # _em_buffer_component.buffer_id 1 _em_buffer_component.id 1 _em_buffer_component.concentration 10 _em_buffer_component.concentration_units mM _em_buffer_component.formula NaH2PO4 _em_buffer_component.name 'Sodium Phosphate' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.025 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 1111708 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Synechocystis sp. (strain PCC 6803 / Kazusa)' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid pRSET6 _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 35.32 _em_helical_entity.axial_rise_per_subunit 2.94 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 5604 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? SerialEM ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 11 CLASSIFICATION ? RELION 3.0 1 ? ? 12 RECONSTRUCTION ? RELION 3.0 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.16-3549 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 7.9 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'European Union (EU)' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 653706 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? #