data_7ATB # _entry.id 7ATB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7ATB pdb_00007atb 10.2210/pdb7atb/pdb WWPDB D_1292112068 ? ? BMRB 34569 ? 10.13018/BMR34569 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-12-09 2 'Structure model' 1 1 2020-12-23 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.page_last' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation_author.identifier_ORCID' 6 3 'Structure model' '_database_2.pdbx_DOI' 7 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7ATB _pdbx_database_status.recvd_initial_deposition_date 2020-10-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '7ASY contains the wildtype structure' 7ASY unspecified PDB '7ASY contains mutant S34P structure' 7AT7 unspecified BMRB 'Transmembrane helix of tumor necrosis factor alpha in trifluorethanol, AGALLL mutant' 34569 unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Guschtschin-Schmidt, N.' 1 ? 'Muhle-Goll, C.' 2 0000-0002-9474-9041 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Iscience _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2589-0042 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 23 _citation.language ? _citation.page_first 101775 _citation.page_last 101775 _citation.title 'Non-canonical Shedding of TNF alpha by SPPL2a Is Determined by the Conformational Flexibility of Its Transmembrane Helix.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.isci.2020.101775 _citation.pdbx_database_id_PubMed 33294784 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Spitz, C.' 1 ? primary 'Schlosser, C.' 2 ? primary 'Guschtschin-Schmidt, N.' 3 ? primary 'Stelzer, W.' 4 ? primary 'Menig, S.' 5 ? primary 'Gotz, A.' 6 ? primary 'Haug-Kroper, M.' 7 ? primary 'Scharnagl, C.' 8 ? primary 'Langosch, D.' 9 ? primary 'Muhle-Goll, C.' 10 ? primary 'Fluhrer, R.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Tumor necrosis factor' _entity.formula_weight 3841.764 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cachectin,TNF-alpha,Tumor necrosis factor ligand superfamily member 2,TNF-a' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code RRCLFLSLFSFLIVLLLTTLFCLLHFGVIGPQR _entity_poly.pdbx_seq_one_letter_code_can RRCLFLSLFSFLIVLLLTTLFCLLHFGVIGPQR _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 ARG n 1 3 CYS n 1 4 LEU n 1 5 PHE n 1 6 LEU n 1 7 SER n 1 8 LEU n 1 9 PHE n 1 10 SER n 1 11 PHE n 1 12 LEU n 1 13 ILE n 1 14 VAL n 1 15 LEU n 1 16 LEU n 1 17 LEU n 1 18 THR n 1 19 THR n 1 20 LEU n 1 21 PHE n 1 22 CYS n 1 23 LEU n 1 24 LEU n 1 25 HIS n 1 26 PHE n 1 27 GLY n 1 28 VAL n 1 29 ILE n 1 30 GLY n 1 31 PRO n 1 32 GLN n 1 33 ARG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 33 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 28 28 ARG ARG A . n A 1 2 ARG 2 29 29 ARG ARG A . n A 1 3 CYS 3 30 30 CYS CYS A . n A 1 4 LEU 4 31 31 LEU LEU A . n A 1 5 PHE 5 32 32 PHE PHE A . n A 1 6 LEU 6 33 33 LEU LEU A . n A 1 7 SER 7 34 34 SER SER A . n A 1 8 LEU 8 35 35 LEU LEU A . n A 1 9 PHE 9 36 36 PHE PHE A . n A 1 10 SER 10 37 37 SER SER A . n A 1 11 PHE 11 38 38 PHE PHE A . n A 1 12 LEU 12 39 39 LEU LEU A . n A 1 13 ILE 13 40 40 ILE ILE A . n A 1 14 VAL 14 41 41 VAL VAL A . n A 1 15 LEU 15 42 42 LEU LEU A . n A 1 16 LEU 16 43 43 LEU LEU A . n A 1 17 LEU 17 44 44 LEU LEU A . n A 1 18 THR 18 45 45 THR THR A . n A 1 19 THR 19 46 46 THR THR A . n A 1 20 LEU 20 47 47 LEU LEU A . n A 1 21 PHE 21 48 48 PHE PHE A . n A 1 22 CYS 22 49 49 CYS CYS A . n A 1 23 LEU 23 50 50 LEU LEU A . n A 1 24 LEU 24 51 51 LEU LEU A . n A 1 25 HIS 25 52 52 HIS HIS A . n A 1 26 PHE 26 53 53 PHE PHE A . n A 1 27 GLY 27 54 54 GLY GLY A . n A 1 28 VAL 28 55 55 VAL VAL A . n A 1 29 ILE 29 56 56 ILE ILE A . n A 1 30 GLY 30 57 57 GLY GLY A . n A 1 31 PRO 31 58 58 PRO PRO A . n A 1 32 GLN 32 59 59 GLN GLN A . n A 1 33 ARG 33 60 60 ARG ARG A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7ATB _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7ATB _struct.title 'Transmembrane helix of tumor necrosis factor alpha in trifluorethanol, AGALLL mutant' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7ATB _struct_keywords.text 'Transmembrane domain, helix, Trifluorethanol, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TNFA_HUMAN _struct_ref.pdbx_db_accession P01375 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code RRCLFLSLFSFLIVAGATTLFCLLHFGVIGPQR _struct_ref.pdbx_align_begin 28 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7ATB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 33 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01375 _struct_ref_seq.db_align_beg 28 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 60 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 28 _struct_ref_seq.pdbx_auth_seq_align_end 60 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7ATB LEU A 15 ? UNP P01375 ALA 42 'engineered mutation' 42 1 1 7ATB LEU A 16 ? UNP P01375 GLY 43 'engineered mutation' 43 2 1 7ATB LEU A 17 ? UNP P01375 ALA 44 'engineered mutation' 44 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 3670 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id CYS _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 3 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 27 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id CYS _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 30 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 54 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 55 ? ? -40.13 -72.51 2 1 GLN A 59 ? ? -89.52 47.03 3 2 VAL A 55 ? ? -145.62 -84.60 4 3 VAL A 55 ? ? -179.82 -48.23 5 3 ILE A 56 ? ? -165.08 107.64 6 4 ILE A 56 ? ? -158.08 83.68 7 4 PRO A 58 ? ? -69.75 -171.59 8 6 VAL A 55 ? ? -100.44 76.08 9 6 PRO A 58 ? ? -58.52 92.31 10 7 VAL A 55 ? ? -153.54 -42.59 11 8 ILE A 56 ? ? -163.15 88.91 12 8 GLN A 59 ? ? 58.92 19.60 13 9 PRO A 58 ? ? -62.81 96.73 14 10 ILE A 56 ? ? -149.17 -119.16 15 10 PRO A 58 ? ? -64.46 -72.78 16 10 GLN A 59 ? ? -165.73 31.27 17 11 ILE A 56 ? ? -161.92 90.02 18 11 PRO A 58 ? ? -61.96 -176.63 19 12 ILE A 56 ? ? -162.35 92.94 20 12 PRO A 58 ? ? -68.86 -158.20 21 12 GLN A 59 ? ? -152.80 29.69 22 13 CYS A 30 ? ? -63.89 97.86 23 13 GLN A 59 ? ? 54.35 85.48 24 15 PRO A 58 ? ? -61.82 91.40 25 16 VAL A 55 ? ? -178.41 -53.01 26 16 ILE A 56 ? ? -160.39 4.72 27 18 VAL A 55 ? ? -62.13 -78.24 28 18 GLN A 59 ? ? 54.11 81.84 29 19 ILE A 56 ? ? -162.91 101.26 30 19 PRO A 58 ? ? -63.89 -178.51 31 20 VAL A 55 ? ? -51.21 -71.54 32 20 ILE A 56 ? ? -139.59 -123.20 33 20 PRO A 58 ? ? -79.20 -151.07 # _pdbx_nmr_ensemble.entry_id 7ATB _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7ATB _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.5 mM TNFA_TM_AGALLL, trifluoroethanol/water' _pdbx_nmr_sample_details.solvent_system trifluoroethanol/water _pdbx_nmr_sample_details.label 1H_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component TNFA_TM_AGALLL _pdbx_nmr_exptl_sample.concentration 0.5 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details '80% TFE-d2/20% dH2O with 5 mM TCEP' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err 0.1 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units M _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.3 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err 0.1 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-13C HSQC' 1 isotropic # _pdbx_nmr_refine.entry_id 7ATB _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing TopSpin ? 'Bruker Biospin' 2 'chemical shift assignment' 'CcpNmr Analysis' ? CCPN 3 'peak picking' 'CcpNmr Analysis' ? CCPN 4 'structure calculation' ARIA ? ;Linge, O'Donoghue and Nilges ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 CYS N N N N 41 CYS CA C N R 42 CYS C C N N 43 CYS O O N N 44 CYS CB C N N 45 CYS SG S N N 46 CYS OXT O N N 47 CYS H H N N 48 CYS H2 H N N 49 CYS HA H N N 50 CYS HB2 H N N 51 CYS HB3 H N N 52 CYS HG H N N 53 CYS HXT H N N 54 GLN N N N N 55 GLN CA C N S 56 GLN C C N N 57 GLN O O N N 58 GLN CB C N N 59 GLN CG C N N 60 GLN CD C N N 61 GLN OE1 O N N 62 GLN NE2 N N N 63 GLN OXT O N N 64 GLN H H N N 65 GLN H2 H N N 66 GLN HA H N N 67 GLN HB2 H N N 68 GLN HB3 H N N 69 GLN HG2 H N N 70 GLN HG3 H N N 71 GLN HE21 H N N 72 GLN HE22 H N N 73 GLN HXT H N N 74 GLY N N N N 75 GLY CA C N N 76 GLY C C N N 77 GLY O O N N 78 GLY OXT O N N 79 GLY H H N N 80 GLY H2 H N N 81 GLY HA2 H N N 82 GLY HA3 H N N 83 GLY HXT H N N 84 HIS N N N N 85 HIS CA C N S 86 HIS C C N N 87 HIS O O N N 88 HIS CB C N N 89 HIS CG C Y N 90 HIS ND1 N Y N 91 HIS CD2 C Y N 92 HIS CE1 C Y N 93 HIS NE2 N Y N 94 HIS OXT O N N 95 HIS H H N N 96 HIS H2 H N N 97 HIS HA H N N 98 HIS HB2 H N N 99 HIS HB3 H N N 100 HIS HD1 H N N 101 HIS HD2 H N N 102 HIS HE1 H N N 103 HIS HE2 H N N 104 HIS HXT H N N 105 ILE N N N N 106 ILE CA C N S 107 ILE C C N N 108 ILE O O N N 109 ILE CB C N S 110 ILE CG1 C N N 111 ILE CG2 C N N 112 ILE CD1 C N N 113 ILE OXT O N N 114 ILE H H N N 115 ILE H2 H N N 116 ILE HA H N N 117 ILE HB H N N 118 ILE HG12 H N N 119 ILE HG13 H N N 120 ILE HG21 H N N 121 ILE HG22 H N N 122 ILE HG23 H N N 123 ILE HD11 H N N 124 ILE HD12 H N N 125 ILE HD13 H N N 126 ILE HXT H N N 127 LEU N N N N 128 LEU CA C N S 129 LEU C C N N 130 LEU O O N N 131 LEU CB C N N 132 LEU CG C N N 133 LEU CD1 C N N 134 LEU CD2 C N N 135 LEU OXT O N N 136 LEU H H N N 137 LEU H2 H N N 138 LEU HA H N N 139 LEU HB2 H N N 140 LEU HB3 H N N 141 LEU HG H N N 142 LEU HD11 H N N 143 LEU HD12 H N N 144 LEU HD13 H N N 145 LEU HD21 H N N 146 LEU HD22 H N N 147 LEU HD23 H N N 148 LEU HXT H N N 149 PHE N N N N 150 PHE CA C N S 151 PHE C C N N 152 PHE O O N N 153 PHE CB C N N 154 PHE CG C Y N 155 PHE CD1 C Y N 156 PHE CD2 C Y N 157 PHE CE1 C Y N 158 PHE CE2 C Y N 159 PHE CZ C Y N 160 PHE OXT O N N 161 PHE H H N N 162 PHE H2 H N N 163 PHE HA H N N 164 PHE HB2 H N N 165 PHE HB3 H N N 166 PHE HD1 H N N 167 PHE HD2 H N N 168 PHE HE1 H N N 169 PHE HE2 H N N 170 PHE HZ H N N 171 PHE HXT H N N 172 PRO N N N N 173 PRO CA C N S 174 PRO C C N N 175 PRO O O N N 176 PRO CB C N N 177 PRO CG C N N 178 PRO CD C N N 179 PRO OXT O N N 180 PRO H H N N 181 PRO HA H N N 182 PRO HB2 H N N 183 PRO HB3 H N N 184 PRO HG2 H N N 185 PRO HG3 H N N 186 PRO HD2 H N N 187 PRO HD3 H N N 188 PRO HXT H N N 189 SER N N N N 190 SER CA C N S 191 SER C C N N 192 SER O O N N 193 SER CB C N N 194 SER OG O N N 195 SER OXT O N N 196 SER H H N N 197 SER H2 H N N 198 SER HA H N N 199 SER HB2 H N N 200 SER HB3 H N N 201 SER HG H N N 202 SER HXT H N N 203 THR N N N N 204 THR CA C N S 205 THR C C N N 206 THR O O N N 207 THR CB C N R 208 THR OG1 O N N 209 THR CG2 C N N 210 THR OXT O N N 211 THR H H N N 212 THR H2 H N N 213 THR HA H N N 214 THR HB H N N 215 THR HG1 H N N 216 THR HG21 H N N 217 THR HG22 H N N 218 THR HG23 H N N 219 THR HXT H N N 220 VAL N N N N 221 VAL CA C N S 222 VAL C C N N 223 VAL O O N N 224 VAL CB C N N 225 VAL CG1 C N N 226 VAL CG2 C N N 227 VAL OXT O N N 228 VAL H H N N 229 VAL H2 H N N 230 VAL HA H N N 231 VAL HB H N N 232 VAL HG11 H N N 233 VAL HG12 H N N 234 VAL HG13 H N N 235 VAL HG21 H N N 236 VAL HG22 H N N 237 VAL HG23 H N N 238 VAL HXT H N N 239 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 CYS N CA sing N N 39 CYS N H sing N N 40 CYS N H2 sing N N 41 CYS CA C sing N N 42 CYS CA CB sing N N 43 CYS CA HA sing N N 44 CYS C O doub N N 45 CYS C OXT sing N N 46 CYS CB SG sing N N 47 CYS CB HB2 sing N N 48 CYS CB HB3 sing N N 49 CYS SG HG sing N N 50 CYS OXT HXT sing N N 51 GLN N CA sing N N 52 GLN N H sing N N 53 GLN N H2 sing N N 54 GLN CA C sing N N 55 GLN CA CB sing N N 56 GLN CA HA sing N N 57 GLN C O doub N N 58 GLN C OXT sing N N 59 GLN CB CG sing N N 60 GLN CB HB2 sing N N 61 GLN CB HB3 sing N N 62 GLN CG CD sing N N 63 GLN CG HG2 sing N N 64 GLN CG HG3 sing N N 65 GLN CD OE1 doub N N 66 GLN CD NE2 sing N N 67 GLN NE2 HE21 sing N N 68 GLN NE2 HE22 sing N N 69 GLN OXT HXT sing N N 70 GLY N CA sing N N 71 GLY N H sing N N 72 GLY N H2 sing N N 73 GLY CA C sing N N 74 GLY CA HA2 sing N N 75 GLY CA HA3 sing N N 76 GLY C O doub N N 77 GLY C OXT sing N N 78 GLY OXT HXT sing N N 79 HIS N CA sing N N 80 HIS N H sing N N 81 HIS N H2 sing N N 82 HIS CA C sing N N 83 HIS CA CB sing N N 84 HIS CA HA sing N N 85 HIS C O doub N N 86 HIS C OXT sing N N 87 HIS CB CG sing N N 88 HIS CB HB2 sing N N 89 HIS CB HB3 sing N N 90 HIS CG ND1 sing Y N 91 HIS CG CD2 doub Y N 92 HIS ND1 CE1 doub Y N 93 HIS ND1 HD1 sing N N 94 HIS CD2 NE2 sing Y N 95 HIS CD2 HD2 sing N N 96 HIS CE1 NE2 sing Y N 97 HIS CE1 HE1 sing N N 98 HIS NE2 HE2 sing N N 99 HIS OXT HXT sing N N 100 ILE N CA sing N N 101 ILE N H sing N N 102 ILE N H2 sing N N 103 ILE CA C sing N N 104 ILE CA CB sing N N 105 ILE CA HA sing N N 106 ILE C O doub N N 107 ILE C OXT sing N N 108 ILE CB CG1 sing N N 109 ILE CB CG2 sing N N 110 ILE CB HB sing N N 111 ILE CG1 CD1 sing N N 112 ILE CG1 HG12 sing N N 113 ILE CG1 HG13 sing N N 114 ILE CG2 HG21 sing N N 115 ILE CG2 HG22 sing N N 116 ILE CG2 HG23 sing N N 117 ILE CD1 HD11 sing N N 118 ILE CD1 HD12 sing N N 119 ILE CD1 HD13 sing N N 120 ILE OXT HXT sing N N 121 LEU N CA sing N N 122 LEU N H sing N N 123 LEU N H2 sing N N 124 LEU CA C sing N N 125 LEU CA CB sing N N 126 LEU CA HA sing N N 127 LEU C O doub N N 128 LEU C OXT sing N N 129 LEU CB CG sing N N 130 LEU CB HB2 sing N N 131 LEU CB HB3 sing N N 132 LEU CG CD1 sing N N 133 LEU CG CD2 sing N N 134 LEU CG HG sing N N 135 LEU CD1 HD11 sing N N 136 LEU CD1 HD12 sing N N 137 LEU CD1 HD13 sing N N 138 LEU CD2 HD21 sing N N 139 LEU CD2 HD22 sing N N 140 LEU CD2 HD23 sing N N 141 LEU OXT HXT sing N N 142 PHE N CA sing N N 143 PHE N H sing N N 144 PHE N H2 sing N N 145 PHE CA C sing N N 146 PHE CA CB sing N N 147 PHE CA HA sing N N 148 PHE C O doub N N 149 PHE C OXT sing N N 150 PHE CB CG sing N N 151 PHE CB HB2 sing N N 152 PHE CB HB3 sing N N 153 PHE CG CD1 doub Y N 154 PHE CG CD2 sing Y N 155 PHE CD1 CE1 sing Y N 156 PHE CD1 HD1 sing N N 157 PHE CD2 CE2 doub Y N 158 PHE CD2 HD2 sing N N 159 PHE CE1 CZ doub Y N 160 PHE CE1 HE1 sing N N 161 PHE CE2 CZ sing Y N 162 PHE CE2 HE2 sing N N 163 PHE CZ HZ sing N N 164 PHE OXT HXT sing N N 165 PRO N CA sing N N 166 PRO N CD sing N N 167 PRO N H sing N N 168 PRO CA C sing N N 169 PRO CA CB sing N N 170 PRO CA HA sing N N 171 PRO C O doub N N 172 PRO C OXT sing N N 173 PRO CB CG sing N N 174 PRO CB HB2 sing N N 175 PRO CB HB3 sing N N 176 PRO CG CD sing N N 177 PRO CG HG2 sing N N 178 PRO CG HG3 sing N N 179 PRO CD HD2 sing N N 180 PRO CD HD3 sing N N 181 PRO OXT HXT sing N N 182 SER N CA sing N N 183 SER N H sing N N 184 SER N H2 sing N N 185 SER CA C sing N N 186 SER CA CB sing N N 187 SER CA HA sing N N 188 SER C O doub N N 189 SER C OXT sing N N 190 SER CB OG sing N N 191 SER CB HB2 sing N N 192 SER CB HB3 sing N N 193 SER OG HG sing N N 194 SER OXT HXT sing N N 195 THR N CA sing N N 196 THR N H sing N N 197 THR N H2 sing N N 198 THR CA C sing N N 199 THR CA CB sing N N 200 THR CA HA sing N N 201 THR C O doub N N 202 THR C OXT sing N N 203 THR CB OG1 sing N N 204 THR CB CG2 sing N N 205 THR CB HB sing N N 206 THR OG1 HG1 sing N N 207 THR CG2 HG21 sing N N 208 THR CG2 HG22 sing N N 209 THR CG2 HG23 sing N N 210 THR OXT HXT sing N N 211 VAL N CA sing N N 212 VAL N H sing N N 213 VAL N H2 sing N N 214 VAL CA C sing N N 215 VAL CA CB sing N N 216 VAL CA HA sing N N 217 VAL C O doub N N 218 VAL C OXT sing N N 219 VAL CB CG1 sing N N 220 VAL CB CG2 sing N N 221 VAL CB HB sing N N 222 VAL CG1 HG11 sing N N 223 VAL CG1 HG12 sing N N 224 VAL CG1 HG13 sing N N 225 VAL CG2 HG21 sing N N 226 VAL CG2 HG22 sing N N 227 VAL CG2 HG23 sing N N 228 VAL OXT HXT sing N N 229 # _pdbx_audit_support.funding_organization 'German Research Foundation (DFG)' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number MU1606/6-2 _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details 'TXI cryoprobe' # _atom_sites.entry_id 7ATB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_