HEADER HYDROLASE 07-APR-20 7BUK TITLE T1 LIPASE MUTANT - 5M (D43E/T118N/E226D/E250L/N304E) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS ZALIHAE; SOURCE 3 ORGANISM_TAXID: 213419; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PLYSS KEYWDS LIPASE, MUTATION, TRIGLYCERIDES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.N.H.ISHAK,R.N.Z.R.A.RAHMAN,M.S.M.ALI,A.T.C.LEOW,N.H.A.KAMARUDIN REVDAT 3 29-NOV-23 7BUK 1 REMARK REVDAT 2 16-JUN-21 7BUK 1 JRNL REVDAT 1 07-APR-21 7BUK 0 JRNL AUTH S.N.H.ISHAK,N.H.A.KAMARUDIN,M.S.M.ALI,A.T.C.LEOW, JRNL AUTH 2 F.M.SHARIFF,R.N.Z.R.A.RAHMAN JRNL TITL STRUCTURE ELUCIDATION AND DOCKING ANALYSIS OF 5M MUTANT OF JRNL TITL 2 T1 LIPASE GEOBACILLUS ZALIHAE. JRNL REF PLOS ONE V. 16 51751 2021 JRNL REFN ESSN 1932-6203 JRNL PMID 34061877 JRNL DOI 10.1371/JOURNAL.PONE.0251751 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 23631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1188 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1505 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : -1.83000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.90000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.376 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.524 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.856 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6280 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5564 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8540 ; 1.587 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12848 ; 1.247 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 772 ; 7.324 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 366 ;30.584 ;21.148 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 954 ;16.499 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;18.431 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 768 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7230 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1478 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7BUK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300015947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : CU REMARK 200 OPTICS : DEXTRIS 200K REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24822 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.12900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2DSN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M SODIUM CACODYLATE TRIHYDRATE, REMARK 280 0.4 M SODIUM CITRATE TRIBASIC PH 6.5, 0.2 M NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.79600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.63450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.79600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.63450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 578 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 SER A -16 REMARK 465 PRO A -15 REMARK 465 ILE A -14 REMARK 465 SER A -13 REMARK 465 ARG A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ALA A 1 REMARK 465 MET B -17 REMARK 465 SER B -16 REMARK 465 PRO B -15 REMARK 465 ILE B -14 REMARK 465 SER B -13 REMARK 465 ARG B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ALA B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 92 OD2 ASP A 205 2.05 REMARK 500 NH2 ARG B 92 OD2 ASP B 205 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 113 -144.51 64.76 REMARK 500 PHE A 154 8.29 -150.43 REMARK 500 VAL A 203 -59.24 70.38 REMARK 500 LEU A 208 33.24 -99.87 REMARK 500 ARG A 214 136.50 -170.92 REMARK 500 PRO A 217 125.84 -34.28 REMARK 500 ARG A 271 43.02 -145.69 REMARK 500 ASN A 288 131.64 -38.65 REMARK 500 ASP A 310 -148.15 -116.01 REMARK 500 ILE A 319 -40.20 -137.19 REMARK 500 LYS A 329 -56.91 -137.17 REMARK 500 ASN A 367 94.69 -160.29 REMARK 500 LEU B 98 58.97 -147.19 REMARK 500 SER B 113 -137.44 60.61 REMARK 500 ASP B 175 51.67 -108.04 REMARK 500 ALA B 192 -12.20 81.66 REMARK 500 VAL B 203 -70.60 68.60 REMARK 500 ARG B 271 42.63 -148.23 REMARK 500 LEU B 277 -80.21 -70.95 REMARK 500 LEU B 285 128.40 -39.55 REMARK 500 ASP B 310 -156.10 -139.74 REMARK 500 LYS B 329 -53.71 -122.66 REMARK 500 ASN B 367 93.96 -172.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD1 REMARK 620 2 ASP A 61 OD2 54.5 REMARK 620 3 HIS A 81 NE2 95.9 150.3 REMARK 620 4 HIS A 87 NE2 115.9 89.3 107.1 REMARK 620 5 ASP A 238 OD2 128.7 102.0 96.6 107.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 286 O REMARK 620 2 GLU A 360 OE2 84.0 REMARK 620 3 ASP A 365 OD2 99.8 113.0 REMARK 620 4 PRO A 366 O 166.2 95.5 93.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 61 OD1 REMARK 620 2 HIS B 81 NE2 102.9 REMARK 620 3 HIS B 87 NE2 115.1 103.3 REMARK 620 4 ASP B 238 OD2 132.5 95.4 102.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 286 O REMARK 620 2 GLU B 360 OE2 81.4 REMARK 620 3 ASP B 365 OD2 110.5 120.0 REMARK 620 4 PRO B 366 O 165.1 96.2 83.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 402 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS IS D43E/T118N/E226D/E250L/N304E MUTANT. REMARK 999 AND 18 N-TERMINAL RESIDUES (MSPISRHHHHHHLVPRGS) ARE EXPRESSION TAGS. DBREF 7BUK A -17 388 PDB 7BUK 7BUK -17 388 DBREF 7BUK B -17 388 PDB 7BUK 7BUK -17 388 SEQRES 1 A 406 MET SER PRO ILE SER ARG HIS HIS HIS HIS HIS HIS LEU SEQRES 2 A 406 VAL PRO ARG GLY SER ALA SER LEU ARG ALA ASN ASP ALA SEQRES 3 A 406 PRO ILE VAL LEU LEU HIS GLY PHE THR GLY TRP GLY ARG SEQRES 4 A 406 GLU GLU MET PHE GLY PHE LYS TYR TRP GLY GLY VAL ARG SEQRES 5 A 406 GLY ASP ILE GLU GLN TRP LEU ASN GLU ASN GLY TYR ARG SEQRES 6 A 406 THR TYR THR LEU ALA VAL GLY PRO LEU SER SER ASN TRP SEQRES 7 A 406 ASP ARG ALA CYS GLU ALA TYR ALA GLN LEU VAL GLY GLY SEQRES 8 A 406 THR VAL ASP TYR GLY ALA ALA HIS ALA ALA LYS HIS GLY SEQRES 9 A 406 HIS ALA ARG PHE GLY ARG THR TYR PRO GLY LEU LEU PRO SEQRES 10 A 406 GLU LEU LYS ARG GLY GLY ARG ILE HIS ILE ILE ALA HIS SEQRES 11 A 406 SER GLN GLY GLY GLN ASN ALA ARG MET LEU VAL SER LEU SEQRES 12 A 406 LEU GLU ASN GLY SER GLN GLU GLU ARG GLU TYR ALA LYS SEQRES 13 A 406 ALA HIS ASN VAL SER LEU SER PRO LEU PHE GLU GLY GLY SEQRES 14 A 406 HIS HIS PHE VAL LEU SER VAL THR THR ILE ALA THR PRO SEQRES 15 A 406 HIS ASP GLY THR THR LEU VAL ASN MET VAL ASP PHE THR SEQRES 16 A 406 ASP ARG PHE PHE ASP LEU GLN LYS ALA VAL LEU GLU ALA SEQRES 17 A 406 ALA ALA VAL ALA SER ASN VAL PRO TYR THR SER GLN VAL SEQRES 18 A 406 TYR ASP PHE LYS LEU ASP GLN TRP GLY LEU ARG ARG GLN SEQRES 19 A 406 PRO GLY GLU SER PHE ASP HIS TYR PHE ASP ARG LEU LYS SEQRES 20 A 406 ARG SER PRO VAL TRP THR SER THR ASP THR ALA ARG TYR SEQRES 21 A 406 ASP LEU SER VAL SER GLY ALA LEU LYS LEU ASN GLN TRP SEQRES 22 A 406 VAL GLN ALA SER PRO ASN THR TYR TYR LEU SER PHE SER SEQRES 23 A 406 THR GLU ARG THR TYR ARG GLY ALA LEU THR GLY ASN HIS SEQRES 24 A 406 TYR PRO GLU LEU GLY MET ASN ALA PHE SER ALA VAL VAL SEQRES 25 A 406 CYS ALA PRO PHE LEU GLY SER TYR ARG GLU PRO THR LEU SEQRES 26 A 406 GLY ILE ASP ASP ARG TRP LEU GLU ASN ASP GLY ILE VAL SEQRES 27 A 406 ASN THR VAL SER MET ASN GLY PRO LYS ARG GLY SER SER SEQRES 28 A 406 ASP ARG ILE VAL PRO TYR ASP GLY THR LEU LYS LYS GLY SEQRES 29 A 406 VAL TRP ASN ASP MET GLY THR TYR ASN VAL ASP HIS LEU SEQRES 30 A 406 GLU ILE ILE GLY VAL ASP PRO ASN PRO SER PHE ASP ILE SEQRES 31 A 406 ARG ALA PHE TYR LEU ARG LEU ALA GLU GLN LEU ALA SER SEQRES 32 A 406 LEU ARG PRO SEQRES 1 B 406 MET SER PRO ILE SER ARG HIS HIS HIS HIS HIS HIS LEU SEQRES 2 B 406 VAL PRO ARG GLY SER ALA SER LEU ARG ALA ASN ASP ALA SEQRES 3 B 406 PRO ILE VAL LEU LEU HIS GLY PHE THR GLY TRP GLY ARG SEQRES 4 B 406 GLU GLU MET PHE GLY PHE LYS TYR TRP GLY GLY VAL ARG SEQRES 5 B 406 GLY ASP ILE GLU GLN TRP LEU ASN GLU ASN GLY TYR ARG SEQRES 6 B 406 THR TYR THR LEU ALA VAL GLY PRO LEU SER SER ASN TRP SEQRES 7 B 406 ASP ARG ALA CYS GLU ALA TYR ALA GLN LEU VAL GLY GLY SEQRES 8 B 406 THR VAL ASP TYR GLY ALA ALA HIS ALA ALA LYS HIS GLY SEQRES 9 B 406 HIS ALA ARG PHE GLY ARG THR TYR PRO GLY LEU LEU PRO SEQRES 10 B 406 GLU LEU LYS ARG GLY GLY ARG ILE HIS ILE ILE ALA HIS SEQRES 11 B 406 SER GLN GLY GLY GLN ASN ALA ARG MET LEU VAL SER LEU SEQRES 12 B 406 LEU GLU ASN GLY SER GLN GLU GLU ARG GLU TYR ALA LYS SEQRES 13 B 406 ALA HIS ASN VAL SER LEU SER PRO LEU PHE GLU GLY GLY SEQRES 14 B 406 HIS HIS PHE VAL LEU SER VAL THR THR ILE ALA THR PRO SEQRES 15 B 406 HIS ASP GLY THR THR LEU VAL ASN MET VAL ASP PHE THR SEQRES 16 B 406 ASP ARG PHE PHE ASP LEU GLN LYS ALA VAL LEU GLU ALA SEQRES 17 B 406 ALA ALA VAL ALA SER ASN VAL PRO TYR THR SER GLN VAL SEQRES 18 B 406 TYR ASP PHE LYS LEU ASP GLN TRP GLY LEU ARG ARG GLN SEQRES 19 B 406 PRO GLY GLU SER PHE ASP HIS TYR PHE ASP ARG LEU LYS SEQRES 20 B 406 ARG SER PRO VAL TRP THR SER THR ASP THR ALA ARG TYR SEQRES 21 B 406 ASP LEU SER VAL SER GLY ALA LEU LYS LEU ASN GLN TRP SEQRES 22 B 406 VAL GLN ALA SER PRO ASN THR TYR TYR LEU SER PHE SER SEQRES 23 B 406 THR GLU ARG THR TYR ARG GLY ALA LEU THR GLY ASN HIS SEQRES 24 B 406 TYR PRO GLU LEU GLY MET ASN ALA PHE SER ALA VAL VAL SEQRES 25 B 406 CYS ALA PRO PHE LEU GLY SER TYR ARG GLU PRO THR LEU SEQRES 26 B 406 GLY ILE ASP ASP ARG TRP LEU GLU ASN ASP GLY ILE VAL SEQRES 27 B 406 ASN THR VAL SER MET ASN GLY PRO LYS ARG GLY SER SER SEQRES 28 B 406 ASP ARG ILE VAL PRO TYR ASP GLY THR LEU LYS LYS GLY SEQRES 29 B 406 VAL TRP ASN ASP MET GLY THR TYR ASN VAL ASP HIS LEU SEQRES 30 B 406 GLU ILE ILE GLY VAL ASP PRO ASN PRO SER PHE ASP ILE SEQRES 31 B 406 ARG ALA PHE TYR LEU ARG LEU ALA GLU GLN LEU ALA SER SEQRES 32 B 406 LEU ARG PRO HET ZN A 401 1 HET CA A 402 1 HET ZN B 401 1 HET CA B 402 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *183(H2 O) HELIX 1 AA1 GLU A 23 PHE A 27 5 5 HELIX 2 AA2 GLY A 31 GLY A 35 5 5 HELIX 3 AA3 ASP A 36 ASN A 44 1 9 HELIX 4 AA4 SER A 58 GLY A 72 1 15 HELIX 5 AA5 GLY A 78 GLY A 86 1 9 HELIX 6 AA6 LEU A 98 GLY A 104 5 7 HELIX 7 AA7 GLN A 114 GLY A 129 1 16 HELIX 8 AA8 SER A 130 HIS A 140 1 11 HELIX 9 AA9 SER A 145 GLU A 149 5 5 HELIX 10 AB1 THR A 168 MET A 173 5 6 HELIX 11 AB2 ASP A 175 ALA A 191 1 17 HELIX 12 AB3 LEU A 208 GLY A 212 5 5 HELIX 13 AB4 SER A 220 ARG A 230 1 11 HELIX 14 AB5 SER A 231 SER A 236 1 6 HELIX 15 AB6 THR A 239 SER A 245 1 7 HELIX 16 AB7 SER A 245 GLN A 254 1 10 HELIX 17 AB8 ASN A 288 CYS A 295 1 8 HELIX 18 AB9 CYS A 295 GLY A 300 1 6 HELIX 19 AC1 GLU A 304 GLY A 308 5 5 HELIX 20 AC2 ASP A 310 LEU A 314 5 5 HELIX 21 AC3 ASN A 321 ASN A 326 5 6 HELIX 22 AC4 ASP A 371 SER A 385 1 15 HELIX 23 AC5 GLU B 23 PHE B 27 5 5 HELIX 24 AC6 GLY B 31 GLY B 35 5 5 HELIX 25 AC7 ASP B 36 ASN B 44 1 9 HELIX 26 AC8 SER B 58 GLY B 72 1 15 HELIX 27 AC9 GLY B 78 GLY B 86 1 9 HELIX 28 AD1 LEU B 98 LYS B 102 5 5 HELIX 29 AD2 GLN B 114 GLY B 129 1 16 HELIX 30 AD3 SER B 130 ASN B 141 1 12 HELIX 31 AD4 SER B 145 GLU B 149 5 5 HELIX 32 AD5 THR B 168 MET B 173 5 6 HELIX 33 AD6 ASP B 175 ALA B 190 1 16 HELIX 34 AD7 LEU B 208 GLY B 212 5 5 HELIX 35 AD8 SER B 220 LYS B 229 1 10 HELIX 36 AD9 SER B 231 SER B 236 1 6 HELIX 37 AE1 THR B 239 SER B 245 1 7 HELIX 38 AE2 SER B 245 GLN B 254 1 10 HELIX 39 AE3 ASN B 288 CYS B 295 1 8 HELIX 40 AE4 CYS B 295 GLY B 300 1 6 HELIX 41 AE5 GLU B 304 GLY B 308 5 5 HELIX 42 AE6 ASP B 310 LEU B 314 5 5 HELIX 43 AE7 ASN B 321 ASN B 326 5 6 HELIX 44 AE8 ASP B 371 SER B 385 1 15 SHEET 1 AA1 7 THR A 48 LEU A 51 0 SHEET 2 AA1 7 ILE A 10 LEU A 13 1 N LEU A 12 O LEU A 51 SHEET 3 AA1 7 ILE A 107 HIS A 112 1 O HIS A 108 N VAL A 11 SHEET 4 AA1 7 VAL A 155 ILE A 161 1 O THR A 159 N ALA A 111 SHEET 5 AA1 7 TYR A 263 GLU A 270 1 O TYR A 263 N VAL A 158 SHEET 6 AA1 7 TRP A 348 ASN A 355 1 O MET A 351 N SER A 266 SHEET 7 AA1 7 ILE A 336 PRO A 338 1 N VAL A 337 O TRP A 348 SHEET 1 AA2 2 GLY A 73 ASP A 76 0 SHEET 2 AA2 2 PHE A 90 TYR A 94 -1 O ARG A 92 N VAL A 75 SHEET 1 AA3 2 THR A 272 ARG A 274 0 SHEET 2 AA3 2 HIS A 281 PRO A 283 -1 O TYR A 282 N TYR A 273 SHEET 1 AA4 7 THR B 48 LEU B 51 0 SHEET 2 AA4 7 ILE B 10 LEU B 13 1 N LEU B 12 O LEU B 51 SHEET 3 AA4 7 ILE B 107 HIS B 112 1 O HIS B 108 N VAL B 11 SHEET 4 AA4 7 VAL B 155 ILE B 161 1 O SER B 157 N ILE B 109 SHEET 5 AA4 7 TYR B 263 THR B 269 1 O PHE B 267 N THR B 160 SHEET 6 AA4 7 TRP B 348 TYR B 354 1 O TYR B 354 N SER B 268 SHEET 7 AA4 7 ILE B 336 PRO B 338 1 N VAL B 337 O TRP B 348 SHEET 1 AA5 2 GLY B 73 ASP B 76 0 SHEET 2 AA5 2 PHE B 90 TYR B 94 -1 O ARG B 92 N VAL B 75 SHEET 1 AA6 2 THR B 272 ARG B 274 0 SHEET 2 AA6 2 HIS B 281 PRO B 283 -1 O TYR B 282 N TYR B 273 LINK OD1 ASP A 61 ZN ZN A 401 1555 1555 2.08 LINK OD2 ASP A 61 ZN ZN A 401 1555 1555 2.65 LINK NE2 HIS A 81 ZN ZN A 401 1555 1555 2.43 LINK NE2 HIS A 87 ZN ZN A 401 1555 1555 2.15 LINK OD2 ASP A 238 ZN ZN A 401 1555 1555 1.98 LINK O GLY A 286 CA CA A 402 1555 1555 2.18 LINK OE2 GLU A 360 CA CA A 402 1555 1555 2.37 LINK OD2 ASP A 365 CA CA A 402 1555 1555 2.58 LINK O PRO A 366 CA CA A 402 1555 1555 2.46 LINK OD1 ASP B 61 ZN ZN B 401 1555 1555 2.06 LINK NE2 HIS B 81 ZN ZN B 401 1555 1555 2.07 LINK NE2 HIS B 87 ZN ZN B 401 1555 1555 2.17 LINK OD2 ASP B 238 ZN ZN B 401 1555 1555 1.94 LINK O GLY B 286 CA CA B 402 1555 1555 2.35 LINK OE2 GLU B 360 CA CA B 402 1555 1555 2.30 LINK OD2 ASP B 365 CA CA B 402 1555 1555 2.42 LINK O PRO B 366 CA CA B 402 1555 1555 2.36 SITE 1 AC1 4 ASP A 61 HIS A 81 HIS A 87 ASP A 238 SITE 1 AC2 4 GLY A 286 GLU A 360 ASP A 365 PRO A 366 SITE 1 AC3 5 SER B 58 ASP B 61 HIS B 81 HIS B 87 SITE 2 AC3 5 ASP B 238 SITE 1 AC4 4 GLY B 286 GLU B 360 ASP B 365 PRO B 366 CRYST1 117.592 81.269 99.522 90.00 97.32 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008504 0.000000 0.001092 0.00000 SCALE2 0.000000 0.012305 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010131 0.00000