data_7BW5 # _entry.id 7BW5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7BW5 pdb_00007bw5 10.2210/pdb7bw5/pdb WWPDB D_1300016455 ? ? BMRB 36343 ? 10.13018/BMR36343 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-09-09 2 'Structure model' 1 1 2020-12-23 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' Other 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_database_status 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_database_2.pdbx_DOI' 11 3 'Structure model' '_database_2.pdbx_database_accession' 12 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 13 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7BW5 _pdbx_database_status.recvd_initial_deposition_date 2020-04-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'a new lasso peptide koreensin' _pdbx_database_related.db_id 36343 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hemmi, H.' 1 ? 'Kodani, S.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J Antibiot (Tokyo)' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1881-1469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 74 _citation.language ? _citation.page_first 42 _citation.page_last 50 _citation.title 'Heterologous production of new lasso peptide koreensin based on genome mining.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41429-020-00363-5 _citation.pdbx_database_id_PubMed 32855516 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fuwa, H.' 1 ? primary 'Hemmi, H.' 2 ? primary 'Kaweewan, I.' 3 ? primary 'Kozaki, I.' 4 ? primary 'Honda, H.' 5 ? primary 'Kodani, S.' 6 0000-0002-6792-1184 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'lasso peptide koreensin' _entity.formula_weight 1672.839 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GPKGDFPDVGDGRILAG _entity_poly.pdbx_seq_one_letter_code_can GPKGDFPDVGDGRILAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LYS n 1 4 GLY n 1 5 ASP n 1 6 PHE n 1 7 PRO n 1 8 ASP n 1 9 VAL n 1 10 GLY n 1 11 ASP n 1 12 GLY n 1 13 ARG n 1 14 ILE n 1 15 LEU n 1 16 ALA n 1 17 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sphingomonas koreensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 93064 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Novosphingobium subterraneum' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 48936 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLY 10 10 1 GLY GLY A . n A 1 11 ASP 11 11 1 ASP ASP A . n A 1 12 GLY 12 12 1 GLY GLY A . n A 1 13 ARG 13 13 1 ARG ARG A . n A 1 14 ILE 14 14 1 ILE ILE A . n A 1 15 LEU 15 15 1 LEU LEU A . n A 1 16 ALA 16 16 1 ALA ALA A . n A 1 17 GLY 17 17 1 GLY GLY A . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 2 2 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 3 3 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 4 4 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 5 5 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 6 6 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 7 7 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 8 8 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 9 9 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 10 10 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 11 11 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 12 12 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 13 13 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 14 14 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 15 15 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7BW5 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7BW5 _struct.title 'a new lasso peptide koreensin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7BW5 _struct_keywords.text 'lasso peptide, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7BW5 _struct_ref.pdbx_db_accession 7BW5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7BW5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7BW5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 17 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 1630 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 2 2 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 3 3 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 4 4 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 5 5 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 6 6 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 7 7 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 8 8 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 9 9 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 10 10 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 11 11 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 12 12 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 13 13 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 14 14 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 15 15 N A GLY 1 ? ? CG A ASP 8 ? ? 1.33 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 2 ? ? -85.07 -84.50 2 1 ASP A 8 ? ? -138.68 -57.42 3 1 VAL A 9 ? ? -144.75 32.31 4 1 ALA A 16 ? ? -140.28 51.26 5 2 PRO A 2 ? ? -72.74 -90.20 6 2 ASP A 8 ? ? -132.55 -46.48 7 2 VAL A 9 ? ? -148.58 54.01 8 2 ALA A 16 ? ? -94.77 46.08 9 3 PRO A 2 ? ? -73.48 -90.92 10 3 ASP A 8 ? ? -157.75 -44.01 11 3 VAL A 9 ? ? -149.46 41.41 12 3 ILE A 14 ? ? -138.82 -42.94 13 4 PRO A 2 ? ? -74.75 -88.04 14 4 PRO A 7 ? ? -43.81 106.46 15 4 VAL A 9 ? ? -155.50 59.35 16 4 ILE A 14 ? ? -143.43 28.72 17 4 ALA A 16 ? ? -139.30 -67.39 18 5 PRO A 2 ? ? -72.71 -90.38 19 5 ASP A 8 ? ? -134.33 -44.84 20 5 VAL A 9 ? ? -145.15 54.82 21 6 PRO A 2 ? ? -88.34 -77.72 22 6 ASP A 8 ? ? -143.17 -45.81 23 6 VAL A 9 ? ? -156.13 38.57 24 6 ILE A 14 ? ? -155.51 25.72 25 6 LEU A 15 ? ? -141.59 57.24 26 7 PRO A 2 ? ? -74.73 -93.03 27 7 VAL A 9 ? ? -155.46 54.53 28 7 LEU A 15 ? ? -150.06 89.62 29 7 ALA A 16 ? ? -127.32 -76.13 30 8 PRO A 2 ? ? -72.75 -94.35 31 8 ASP A 8 ? ? -135.83 -47.27 32 8 ALA A 16 ? ? -114.35 74.22 33 9 PRO A 2 ? ? -74.16 -92.98 34 9 ASP A 8 ? ? -134.50 -43.99 35 9 VAL A 9 ? ? -155.55 56.80 36 9 ILE A 14 ? ? -145.08 32.78 37 10 PRO A 2 ? ? -75.21 -92.27 38 10 VAL A 9 ? ? -157.81 50.88 39 10 ALA A 16 ? ? -112.11 70.88 40 11 PRO A 2 ? ? -80.07 -92.60 41 11 PRO A 7 ? ? -44.47 96.28 42 11 VAL A 9 ? ? -146.41 41.25 43 11 ALA A 16 ? ? -90.53 52.17 44 12 PRO A 2 ? ? -79.59 -91.08 45 12 VAL A 9 ? ? -157.84 34.77 46 13 PRO A 2 ? ? -78.42 -93.63 47 13 ASP A 8 ? ? -139.81 -46.05 48 13 VAL A 9 ? ? -147.55 38.78 49 13 ILE A 14 ? ? -143.89 27.34 50 14 PRO A 2 ? ? -75.58 -90.66 51 14 ASP A 8 ? ? -131.95 -45.58 52 14 VAL A 9 ? ? -154.65 46.21 53 14 ILE A 14 ? ? -146.43 -45.33 54 15 PRO A 2 ? ? -75.67 -91.07 55 15 ASP A 5 ? ? -171.32 -37.77 56 15 VAL A 9 ? ? -155.61 41.90 # _pdbx_nmr_ensemble.entry_id 7BW5 _pdbx_nmr_ensemble.conformers_calculated_total_number 300 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7BW5 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '3.0 mg/mL non labeled koreensin, DMSO' _pdbx_nmr_sample_details.solvent_system DMSO _pdbx_nmr_sample_details.label 'non labeled' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component koreensin _pdbx_nmr_exptl_sample.concentration 3.0 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mg/mL _pdbx_nmr_exptl_sample.isotopic_labeling 'non labeled' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '1D 1H' 2 isotropic 2 1 1 '1D 13C' 2 isotropic 3 1 1 DEPT-135 2 isotropic 4 1 1 '2D 1H-1H NOESY' 2 isotropic 5 1 1 '2D 1H-1H NOESY' 1 isotropic 6 1 1 '2D DQF-COSY' 2 isotropic 8 1 1 '2D 1H-1H TOCSY' 2 isotropic 7 1 1 '2D 1H-13C HSQC' 2 isotropic 9 1 1 '2D 1H-13C HMBC' 2 isotropic 10 1 1 '2D 1H-15N HSQC' 2 isotropic # _pdbx_nmr_refine.entry_id 7BW5 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CNS 1.1 'Brunger, Adams, Clore, Gros, Nilges and Read' 2 'structure calculation' CNS 1.1 'Brunger, Adams, Clore, Gros, Nilges and Read' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' Sparky ? Goddard 5 collection TopSpin ? 'Bruker Biospin' 7 processing TopSpin ? 'Bruker Biospin' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLY N N N N 57 GLY CA C N N 58 GLY C C N N 59 GLY O O N N 60 GLY OXT O N N 61 GLY H H N N 62 GLY H2 H N N 63 GLY HA2 H N N 64 GLY HA3 H N N 65 GLY HXT H N N 66 ILE N N N N 67 ILE CA C N S 68 ILE C C N N 69 ILE O O N N 70 ILE CB C N S 71 ILE CG1 C N N 72 ILE CG2 C N N 73 ILE CD1 C N N 74 ILE OXT O N N 75 ILE H H N N 76 ILE H2 H N N 77 ILE HA H N N 78 ILE HB H N N 79 ILE HG12 H N N 80 ILE HG13 H N N 81 ILE HG21 H N N 82 ILE HG22 H N N 83 ILE HG23 H N N 84 ILE HD11 H N N 85 ILE HD12 H N N 86 ILE HD13 H N N 87 ILE HXT H N N 88 LEU N N N N 89 LEU CA C N S 90 LEU C C N N 91 LEU O O N N 92 LEU CB C N N 93 LEU CG C N N 94 LEU CD1 C N N 95 LEU CD2 C N N 96 LEU OXT O N N 97 LEU H H N N 98 LEU H2 H N N 99 LEU HA H N N 100 LEU HB2 H N N 101 LEU HB3 H N N 102 LEU HG H N N 103 LEU HD11 H N N 104 LEU HD12 H N N 105 LEU HD13 H N N 106 LEU HD21 H N N 107 LEU HD22 H N N 108 LEU HD23 H N N 109 LEU HXT H N N 110 LYS N N N N 111 LYS CA C N S 112 LYS C C N N 113 LYS O O N N 114 LYS CB C N N 115 LYS CG C N N 116 LYS CD C N N 117 LYS CE C N N 118 LYS NZ N N N 119 LYS OXT O N N 120 LYS H H N N 121 LYS H2 H N N 122 LYS HA H N N 123 LYS HB2 H N N 124 LYS HB3 H N N 125 LYS HG2 H N N 126 LYS HG3 H N N 127 LYS HD2 H N N 128 LYS HD3 H N N 129 LYS HE2 H N N 130 LYS HE3 H N N 131 LYS HZ1 H N N 132 LYS HZ2 H N N 133 LYS HZ3 H N N 134 LYS HXT H N N 135 PHE N N N N 136 PHE CA C N S 137 PHE C C N N 138 PHE O O N N 139 PHE CB C N N 140 PHE CG C Y N 141 PHE CD1 C Y N 142 PHE CD2 C Y N 143 PHE CE1 C Y N 144 PHE CE2 C Y N 145 PHE CZ C Y N 146 PHE OXT O N N 147 PHE H H N N 148 PHE H2 H N N 149 PHE HA H N N 150 PHE HB2 H N N 151 PHE HB3 H N N 152 PHE HD1 H N N 153 PHE HD2 H N N 154 PHE HE1 H N N 155 PHE HE2 H N N 156 PHE HZ H N N 157 PHE HXT H N N 158 PRO N N N N 159 PRO CA C N S 160 PRO C C N N 161 PRO O O N N 162 PRO CB C N N 163 PRO CG C N N 164 PRO CD C N N 165 PRO OXT O N N 166 PRO H H N N 167 PRO HA H N N 168 PRO HB2 H N N 169 PRO HB3 H N N 170 PRO HG2 H N N 171 PRO HG3 H N N 172 PRO HD2 H N N 173 PRO HD3 H N N 174 PRO HXT H N N 175 VAL N N N N 176 VAL CA C N S 177 VAL C C N N 178 VAL O O N N 179 VAL CB C N N 180 VAL CG1 C N N 181 VAL CG2 C N N 182 VAL OXT O N N 183 VAL H H N N 184 VAL H2 H N N 185 VAL HA H N N 186 VAL HB H N N 187 VAL HG11 H N N 188 VAL HG12 H N N 189 VAL HG13 H N N 190 VAL HG21 H N N 191 VAL HG22 H N N 192 VAL HG23 H N N 193 VAL HXT H N N 194 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLY N CA sing N N 54 GLY N H sing N N 55 GLY N H2 sing N N 56 GLY CA C sing N N 57 GLY CA HA2 sing N N 58 GLY CA HA3 sing N N 59 GLY C O doub N N 60 GLY C OXT sing N N 61 GLY OXT HXT sing N N 62 ILE N CA sing N N 63 ILE N H sing N N 64 ILE N H2 sing N N 65 ILE CA C sing N N 66 ILE CA CB sing N N 67 ILE CA HA sing N N 68 ILE C O doub N N 69 ILE C OXT sing N N 70 ILE CB CG1 sing N N 71 ILE CB CG2 sing N N 72 ILE CB HB sing N N 73 ILE CG1 CD1 sing N N 74 ILE CG1 HG12 sing N N 75 ILE CG1 HG13 sing N N 76 ILE CG2 HG21 sing N N 77 ILE CG2 HG22 sing N N 78 ILE CG2 HG23 sing N N 79 ILE CD1 HD11 sing N N 80 ILE CD1 HD12 sing N N 81 ILE CD1 HD13 sing N N 82 ILE OXT HXT sing N N 83 LEU N CA sing N N 84 LEU N H sing N N 85 LEU N H2 sing N N 86 LEU CA C sing N N 87 LEU CA CB sing N N 88 LEU CA HA sing N N 89 LEU C O doub N N 90 LEU C OXT sing N N 91 LEU CB CG sing N N 92 LEU CB HB2 sing N N 93 LEU CB HB3 sing N N 94 LEU CG CD1 sing N N 95 LEU CG CD2 sing N N 96 LEU CG HG sing N N 97 LEU CD1 HD11 sing N N 98 LEU CD1 HD12 sing N N 99 LEU CD1 HD13 sing N N 100 LEU CD2 HD21 sing N N 101 LEU CD2 HD22 sing N N 102 LEU CD2 HD23 sing N N 103 LEU OXT HXT sing N N 104 LYS N CA sing N N 105 LYS N H sing N N 106 LYS N H2 sing N N 107 LYS CA C sing N N 108 LYS CA CB sing N N 109 LYS CA HA sing N N 110 LYS C O doub N N 111 LYS C OXT sing N N 112 LYS CB CG sing N N 113 LYS CB HB2 sing N N 114 LYS CB HB3 sing N N 115 LYS CG CD sing N N 116 LYS CG HG2 sing N N 117 LYS CG HG3 sing N N 118 LYS CD CE sing N N 119 LYS CD HD2 sing N N 120 LYS CD HD3 sing N N 121 LYS CE NZ sing N N 122 LYS CE HE2 sing N N 123 LYS CE HE3 sing N N 124 LYS NZ HZ1 sing N N 125 LYS NZ HZ2 sing N N 126 LYS NZ HZ3 sing N N 127 LYS OXT HXT sing N N 128 PHE N CA sing N N 129 PHE N H sing N N 130 PHE N H2 sing N N 131 PHE CA C sing N N 132 PHE CA CB sing N N 133 PHE CA HA sing N N 134 PHE C O doub N N 135 PHE C OXT sing N N 136 PHE CB CG sing N N 137 PHE CB HB2 sing N N 138 PHE CB HB3 sing N N 139 PHE CG CD1 doub Y N 140 PHE CG CD2 sing Y N 141 PHE CD1 CE1 sing Y N 142 PHE CD1 HD1 sing N N 143 PHE CD2 CE2 doub Y N 144 PHE CD2 HD2 sing N N 145 PHE CE1 CZ doub Y N 146 PHE CE1 HE1 sing N N 147 PHE CE2 CZ sing Y N 148 PHE CE2 HE2 sing N N 149 PHE CZ HZ sing N N 150 PHE OXT HXT sing N N 151 PRO N CA sing N N 152 PRO N CD sing N N 153 PRO N H sing N N 154 PRO CA C sing N N 155 PRO CA CB sing N N 156 PRO CA HA sing N N 157 PRO C O doub N N 158 PRO C OXT sing N N 159 PRO CB CG sing N N 160 PRO CB HB2 sing N N 161 PRO CB HB3 sing N N 162 PRO CG CD sing N N 163 PRO CG HG2 sing N N 164 PRO CG HG3 sing N N 165 PRO CD HD2 sing N N 166 PRO CD HD3 sing N N 167 PRO OXT HXT sing N N 168 VAL N CA sing N N 169 VAL N H sing N N 170 VAL N H2 sing N N 171 VAL CA C sing N N 172 VAL CA CB sing N N 173 VAL CA HA sing N N 174 VAL C O doub N N 175 VAL C OXT sing N N 176 VAL CB CG1 sing N N 177 VAL CB CG2 sing N N 178 VAL CB HB sing N N 179 VAL CG1 HG11 sing N N 180 VAL CG1 HG12 sing N N 181 VAL CG1 HG13 sing N N 182 VAL CG2 HG21 sing N N 183 VAL CG2 HG22 sing N N 184 VAL CG2 HG23 sing N N 185 VAL OXT HXT sing N N 186 # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 16K01913 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 600 ? 2 'AVANCE III' ? Bruker 800 ? # _atom_sites.entry_id 7BW5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_