data_7CYH # _entry.id 7CYH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.342 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 7CYH WWPDB D_1300018421 EMDB EMD-30500 # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Binding interface of SARS-CoV-2 RBD and its neutralizing antibody HB27' _pdbx_database_related.db_id EMD-30500 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7CYH _pdbx_database_status.recvd_initial_deposition_date 2020-09-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, X.' 1 0000-0003-0635-278X 'Zhu, L.' 2 0000-0002-6174-296X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Binding interface of SARS-CoV-2 RBD and its neutralizing antibody HB27' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, X.' 1 0000-0003-0635-278X primary 'Zhu, L.' 2 0000-0002-6174-296X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike glycoprotein' 21772.391 1 ? ? ? ? 2 polymer man 'Light chain of HB27' 11921.329 1 ? ? ? ? 3 polymer man 'Heavy chain of HB27' 12917.422 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'S glycoprotein,E2,Peplomer protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; A ? 2 'polypeptide(L)' no no ;IVLTQSPTLSLSPGERATLSCRASESVDNYGISFMNWFQQKPGQAPRLLIYAASNQGSGIPSRFSGSGSGTDFSLTISSL EPEDFAVYFCQQSKEVPRIFGQGTKVEILK ; ;IVLTQSPTLSLSPGERATLSCRASESVDNYGISFMNWFQQKPGQAPRLLIYAASNQGSGIPSRFSGSGSGTDFSLTISSL EPEDFAVYFCQQSKEVPRIFGQGTKVEILK ; D ? 3 'polypeptide(L)' no no ;VKLVESGGGLVKPGGSLRLSCAASGFTFTNYGMSWVRQAPGKRLEWVAEISSGGSYTYYPDTVTGRFTISRDNAKNTLYL QMNSLRAEDTAVYYCARFRYGGGGTVDYWGQGTLVTVSS ; ;VKLVESGGGLVKPGGSLRLSCAASGFTFTNYGMSWVRQAPGKRLEWVAEISSGGSYTYYPDTVTGRFTISRDNAKNTLYL QMNSLRAEDTAVYYCARFRYGGGGTVDYWGQGTLVTVSS ; E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 LEU n 1 3 CYS n 1 4 PRO n 1 5 PHE n 1 6 GLY n 1 7 GLU n 1 8 VAL n 1 9 PHE n 1 10 ASN n 1 11 ALA n 1 12 THR n 1 13 ARG n 1 14 PHE n 1 15 ALA n 1 16 SER n 1 17 VAL n 1 18 TYR n 1 19 ALA n 1 20 TRP n 1 21 ASN n 1 22 ARG n 1 23 LYS n 1 24 ARG n 1 25 ILE n 1 26 SER n 1 27 ASN n 1 28 CYS n 1 29 VAL n 1 30 ALA n 1 31 ASP n 1 32 TYR n 1 33 SER n 1 34 VAL n 1 35 LEU n 1 36 TYR n 1 37 ASN n 1 38 SER n 1 39 ALA n 1 40 SER n 1 41 PHE n 1 42 SER n 1 43 THR n 1 44 PHE n 1 45 LYS n 1 46 CYS n 1 47 TYR n 1 48 GLY n 1 49 VAL n 1 50 SER n 1 51 PRO n 1 52 THR n 1 53 LYS n 1 54 LEU n 1 55 ASN n 1 56 ASP n 1 57 LEU n 1 58 CYS n 1 59 PHE n 1 60 THR n 1 61 ASN n 1 62 VAL n 1 63 TYR n 1 64 ALA n 1 65 ASP n 1 66 SER n 1 67 PHE n 1 68 VAL n 1 69 ILE n 1 70 ARG n 1 71 GLY n 1 72 ASP n 1 73 GLU n 1 74 VAL n 1 75 ARG n 1 76 GLN n 1 77 ILE n 1 78 ALA n 1 79 PRO n 1 80 GLY n 1 81 GLN n 1 82 THR n 1 83 GLY n 1 84 LYS n 1 85 ILE n 1 86 ALA n 1 87 ASP n 1 88 TYR n 1 89 ASN n 1 90 TYR n 1 91 LYS n 1 92 LEU n 1 93 PRO n 1 94 ASP n 1 95 ASP n 1 96 PHE n 1 97 THR n 1 98 GLY n 1 99 CYS n 1 100 VAL n 1 101 ILE n 1 102 ALA n 1 103 TRP n 1 104 ASN n 1 105 SER n 1 106 ASN n 1 107 ASN n 1 108 LEU n 1 109 ASP n 1 110 SER n 1 111 LYS n 1 112 VAL n 1 113 GLY n 1 114 GLY n 1 115 ASN n 1 116 TYR n 1 117 ASN n 1 118 TYR n 1 119 LEU n 1 120 TYR n 1 121 ARG n 1 122 LEU n 1 123 PHE n 1 124 ARG n 1 125 LYS n 1 126 SER n 1 127 ASN n 1 128 LEU n 1 129 LYS n 1 130 PRO n 1 131 PHE n 1 132 GLU n 1 133 ARG n 1 134 ASP n 1 135 ILE n 1 136 SER n 1 137 THR n 1 138 GLU n 1 139 ILE n 1 140 TYR n 1 141 GLN n 1 142 ALA n 1 143 GLY n 1 144 SER n 1 145 THR n 1 146 PRO n 1 147 CYS n 1 148 ASN n 1 149 GLY n 1 150 VAL n 1 151 GLU n 1 152 GLY n 1 153 PHE n 1 154 ASN n 1 155 CYS n 1 156 TYR n 1 157 PHE n 1 158 PRO n 1 159 LEU n 1 160 GLN n 1 161 SER n 1 162 TYR n 1 163 GLY n 1 164 PHE n 1 165 GLN n 1 166 PRO n 1 167 THR n 1 168 ASN n 1 169 GLY n 1 170 VAL n 1 171 GLY n 1 172 TYR n 1 173 GLN n 1 174 PRO n 1 175 TYR n 1 176 ARG n 1 177 VAL n 1 178 VAL n 1 179 VAL n 1 180 LEU n 1 181 SER n 1 182 PHE n 1 183 GLU n 1 184 LEU n 1 185 LEU n 1 186 HIS n 1 187 ALA n 1 188 PRO n 1 189 ALA n 1 190 THR n 1 191 VAL n 1 192 CYS n 1 193 GLY n 1 194 PRO n 2 1 ILE n 2 2 VAL n 2 3 LEU n 2 4 THR n 2 5 GLN n 2 6 SER n 2 7 PRO n 2 8 THR n 2 9 LEU n 2 10 SER n 2 11 LEU n 2 12 SER n 2 13 PRO n 2 14 GLY n 2 15 GLU n 2 16 ARG n 2 17 ALA n 2 18 THR n 2 19 LEU n 2 20 SER n 2 21 CYS n 2 22 ARG n 2 23 ALA n 2 24 SER n 2 25 GLU n 2 26 SER n 2 27 VAL n 2 28 ASP n 2 29 ASN n 2 30 TYR n 2 31 GLY n 2 32 ILE n 2 33 SER n 2 34 PHE n 2 35 MET n 2 36 ASN n 2 37 TRP n 2 38 PHE n 2 39 GLN n 2 40 GLN n 2 41 LYS n 2 42 PRO n 2 43 GLY n 2 44 GLN n 2 45 ALA n 2 46 PRO n 2 47 ARG n 2 48 LEU n 2 49 LEU n 2 50 ILE n 2 51 TYR n 2 52 ALA n 2 53 ALA n 2 54 SER n 2 55 ASN n 2 56 GLN n 2 57 GLY n 2 58 SER n 2 59 GLY n 2 60 ILE n 2 61 PRO n 2 62 SER n 2 63 ARG n 2 64 PHE n 2 65 SER n 2 66 GLY n 2 67 SER n 2 68 GLY n 2 69 SER n 2 70 GLY n 2 71 THR n 2 72 ASP n 2 73 PHE n 2 74 SER n 2 75 LEU n 2 76 THR n 2 77 ILE n 2 78 SER n 2 79 SER n 2 80 LEU n 2 81 GLU n 2 82 PRO n 2 83 GLU n 2 84 ASP n 2 85 PHE n 2 86 ALA n 2 87 VAL n 2 88 TYR n 2 89 PHE n 2 90 CYS n 2 91 GLN n 2 92 GLN n 2 93 SER n 2 94 LYS n 2 95 GLU n 2 96 VAL n 2 97 PRO n 2 98 ARG n 2 99 ILE n 2 100 PHE n 2 101 GLY n 2 102 GLN n 2 103 GLY n 2 104 THR n 2 105 LYS n 2 106 VAL n 2 107 GLU n 2 108 ILE n 2 109 LEU n 2 110 LYS n 3 1 VAL n 3 2 LYS n 3 3 LEU n 3 4 VAL n 3 5 GLU n 3 6 SER n 3 7 GLY n 3 8 GLY n 3 9 GLY n 3 10 LEU n 3 11 VAL n 3 12 LYS n 3 13 PRO n 3 14 GLY n 3 15 GLY n 3 16 SER n 3 17 LEU n 3 18 ARG n 3 19 LEU n 3 20 SER n 3 21 CYS n 3 22 ALA n 3 23 ALA n 3 24 SER n 3 25 GLY n 3 26 PHE n 3 27 THR n 3 28 PHE n 3 29 THR n 3 30 ASN n 3 31 TYR n 3 32 GLY n 3 33 MET n 3 34 SER n 3 35 TRP n 3 36 VAL n 3 37 ARG n 3 38 GLN n 3 39 ALA n 3 40 PRO n 3 41 GLY n 3 42 LYS n 3 43 ARG n 3 44 LEU n 3 45 GLU n 3 46 TRP n 3 47 VAL n 3 48 ALA n 3 49 GLU n 3 50 ILE n 3 51 SER n 3 52 SER n 3 53 GLY n 3 54 GLY n 3 55 SER n 3 56 TYR n 3 57 THR n 3 58 TYR n 3 59 TYR n 3 60 PRO n 3 61 ASP n 3 62 THR n 3 63 VAL n 3 64 THR n 3 65 GLY n 3 66 ARG n 3 67 PHE n 3 68 THR n 3 69 ILE n 3 70 SER n 3 71 ARG n 3 72 ASP n 3 73 ASN n 3 74 ALA n 3 75 LYS n 3 76 ASN n 3 77 THR n 3 78 LEU n 3 79 TYR n 3 80 LEU n 3 81 GLN n 3 82 MET n 3 83 ASN n 3 84 SER n 3 85 LEU n 3 86 ARG n 3 87 ALA n 3 88 GLU n 3 89 ASP n 3 90 THR n 3 91 ALA n 3 92 VAL n 3 93 TYR n 3 94 TYR n 3 95 CYS n 3 96 ALA n 3 97 ARG n 3 98 PHE n 3 99 ARG n 3 100 TYR n 3 101 GLY n 3 102 GLY n 3 103 GLY n 3 104 GLY n 3 105 THR n 3 106 VAL n 3 107 ASP n 3 108 TYR n 3 109 TRP n 3 110 GLY n 3 111 GLN n 3 112 GLY n 3 113 THR n 3 114 LEU n 3 115 VAL n 3 116 THR n 3 117 VAL n 3 118 SER n 3 119 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 194 2019-nCoV ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293T ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 110 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293T ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 119 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293T ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; 334 2 PDB 7CYH 7CYH ? 2 ? 1 3 PDB 7CYH 7CYH ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7CYH A 1 ? 194 ? P0DTC2 334 ? 527 ? 334 527 2 2 7CYH D 1 ? 110 ? 7CYH 2 ? 111 ? 2 111 3 3 7CYH E 1 ? 119 ? 7CYH 2 ? 120 ? 2 120 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7CYH _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7CYH _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.011 ? 3327 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.147 ? 4525 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 10.874 ? 2606 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.062 ? 484 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.008 ? 589 ? f_plane_restr ? ? # _struct.entry_id 7CYH _struct.title 'Binding interface of SARS-CoV-2 RBD and its neutralizing antibody HB27' _struct.pdbx_descriptor 'Spike glycoprotein, Light chain of HB27, Heavy chain of HB27' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7CYH _struct_keywords.text 'SARS-CoV-2, Spike trimer, Neutralizing antibody, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 4 ? PHE A 9 ? PRO A 337 PHE A 342 1 ? 6 HELX_P HELX_P2 AA2 TYR A 32 ? ASN A 37 ? TYR A 365 ASN A 370 1 ? 6 HELX_P HELX_P3 AA3 THR A 52 ? LEU A 57 ? THR A 385 LEU A 390 5 ? 6 HELX_P HELX_P4 AA4 ASP A 72 ? ILE A 77 ? ASP A 405 ILE A 410 5 ? 6 HELX_P HELX_P5 AA5 GLY A 83 ? TYR A 88 ? GLY A 416 TYR A 421 1 ? 6 HELX_P HELX_P6 AA6 ILE B 50 ? SER B 54 ? ILE D 51 SER D 55 5 ? 5 HELX_P HELX_P7 AA7 ARG C 86 ? THR C 90 ? ARG E 87 THR E 91 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 28 SG ? ? A CYS 336 A CYS 361 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf2 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 99 SG ? ? A CYS 379 A CYS 432 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf3 disulf ? ? A CYS 147 SG ? ? ? 1_555 A CYS 155 SG ? ? A CYS 480 A CYS 488 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf4 disulf ? ? B CYS 21 SG ? ? ? 1_555 B CYS 90 SG ? ? D CYS 22 D CYS 91 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf5 disulf ? ? C CYS 21 SG ? ? ? 1_555 C CYS 95 SG ? ? E CYS 22 E CYS 96 1_555 ? ? ? ? ? ? ? 2.038 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 56 B . ? GLN 57 D GLY 57 B ? GLY 58 D 1 -28.27 2 GLY 104 C . ? GLY 105 E THR 105 C ? THR 106 E 1 10.62 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? AA3 ? 3 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 4 ? AA7 ? 2 ? AA8 ? 4 ? AA9 ? 2 ? AB1 ? 4 ? AB2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA9 1 2 ? parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB1 3 4 ? anti-parallel AB2 1 2 ? anti-parallel AB2 2 3 ? anti-parallel AB2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 23 ? ARG A 24 ? LYS A 356 ARG A 357 AA1 2 TYR A 63 ? ALA A 64 ? TYR A 396 ALA A 397 AA2 1 CYS A 28 ? VAL A 29 ? CYS A 361 VAL A 362 AA2 2 VAL A 191 ? CYS A 192 ? VAL A 524 CYS A 525 AA3 1 PHE A 67 ? ARG A 70 ? PHE A 400 ARG A 403 AA3 2 PRO A 174 ? VAL A 179 ? PRO A 507 VAL A 512 AA3 3 VAL A 100 ? ASN A 104 ? VAL A 433 ASN A 437 AA4 1 LEU A 119 ? ARG A 121 ? LEU A 452 ARG A 454 AA4 2 LEU A 159 ? SER A 161 ? LEU A 492 SER A 494 AA5 1 TYR A 140 ? GLN A 141 ? TYR A 473 GLN A 474 AA5 2 CYS A 155 ? TYR A 156 ? CYS A 488 TYR A 489 AA6 1 LEU B 3 ? GLN B 5 ? LEU D 4 GLN D 6 AA6 2 SER B 20 ? ALA B 23 ? SER D 21 ALA D 24 AA6 3 ASP B 72 ? THR B 76 ? ASP D 73 THR D 77 AA6 4 SER B 65 ? SER B 69 ? SER D 66 SER D 70 AA7 1 PHE B 38 ? GLN B 40 ? PHE D 39 GLN D 41 AA7 2 VAL B 87 ? PHE B 89 ? VAL D 88 PHE D 90 AA8 1 LYS C 2 ? GLU C 5 ? LYS E 3 GLU E 6 AA8 2 LEU C 17 ? SER C 24 ? LEU E 18 SER E 25 AA8 3 THR C 77 ? MET C 82 ? THR E 78 MET E 83 AA8 4 ILE C 69 ? ASP C 72 ? ILE E 70 ASP E 73 AA9 1 LEU C 10 ? VAL C 11 ? LEU E 11 VAL E 12 AA9 2 THR C 116 ? VAL C 117 ? THR E 117 VAL E 118 AB1 1 LEU C 44 ? GLU C 49 ? LEU E 45 GLU E 50 AB1 2 MET C 33 ? GLN C 38 ? MET E 34 GLN E 39 AB1 3 VAL C 92 ? PHE C 98 ? VAL E 93 PHE E 99 AB1 4 VAL C 106 ? TRP C 109 ? VAL E 107 TRP E 110 AB2 1 LEU C 44 ? GLU C 49 ? LEU E 45 GLU E 50 AB2 2 MET C 33 ? GLN C 38 ? MET E 34 GLN E 39 AB2 3 VAL C 92 ? PHE C 98 ? VAL E 93 PHE E 99 AB2 4 THR C 113 ? LEU C 114 ? THR E 114 LEU E 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 23 ? N LYS A 356 O ALA A 64 ? O ALA A 397 AA2 1 2 N CYS A 28 ? N CYS A 361 O CYS A 192 ? O CYS A 525 AA3 1 2 N ILE A 69 ? N ILE A 402 O TYR A 175 ? O TYR A 508 AA3 2 3 O VAL A 178 ? O VAL A 511 N ILE A 101 ? N ILE A 434 AA4 1 2 N TYR A 120 ? N TYR A 453 O GLN A 160 ? O GLN A 493 AA5 1 2 N TYR A 140 ? N TYR A 473 O TYR A 156 ? O TYR A 489 AA6 1 2 N THR B 4 ? N THR D 5 O ARG B 22 ? O ARG D 23 AA6 2 3 N CYS B 21 ? N CYS D 22 O PHE B 73 ? O PHE D 74 AA6 3 4 O SER B 74 ? O SER D 75 N SER B 67 ? N SER D 68 AA7 1 2 N PHE B 38 ? N PHE D 39 O PHE B 89 ? O PHE D 90 AA8 1 2 N VAL C 4 ? N VAL E 5 O ALA C 22 ? O ALA E 23 AA8 2 3 N LEU C 19 ? N LEU E 20 O LEU C 80 ? O LEU E 81 AA8 3 4 O THR C 77 ? O THR E 78 N ASP C 72 ? N ASP E 73 AA9 1 2 N VAL C 11 ? N VAL E 12 O THR C 116 ? O THR E 117 AB1 1 2 O GLU C 45 ? O GLU E 46 N ARG C 37 ? N ARG E 38 AB1 2 3 N VAL C 36 ? N VAL E 37 O TYR C 94 ? O TYR E 95 AB1 3 4 N ARG C 97 ? N ARG E 98 O ASP C 107 ? O ASP E 108 AB2 1 2 O GLU C 45 ? O GLU E 46 N ARG C 37 ? N ARG E 38 AB2 2 3 N VAL C 36 ? N VAL E 37 O TYR C 94 ? O TYR E 95 AB2 3 4 N TYR C 93 ? N TYR E 94 O THR C 113 ? O THR E 114 # _atom_sites.entry_id 7CYH _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 334 334 ASN ASN A . n A 1 2 LEU 2 335 335 LEU LEU A . n A 1 3 CYS 3 336 336 CYS CYS A . n A 1 4 PRO 4 337 337 PRO PRO A . n A 1 5 PHE 5 338 338 PHE PHE A . n A 1 6 GLY 6 339 339 GLY GLY A . n A 1 7 GLU 7 340 340 GLU GLU A . n A 1 8 VAL 8 341 341 VAL VAL A . n A 1 9 PHE 9 342 342 PHE PHE A . n A 1 10 ASN 10 343 343 ASN ASN A . n A 1 11 ALA 11 344 344 ALA ALA A . n A 1 12 THR 12 345 345 THR THR A . n A 1 13 ARG 13 346 346 ARG ARG A . n A 1 14 PHE 14 347 347 PHE PHE A . n A 1 15 ALA 15 348 348 ALA ALA A . n A 1 16 SER 16 349 349 SER SER A . n A 1 17 VAL 17 350 350 VAL VAL A . n A 1 18 TYR 18 351 351 TYR TYR A . n A 1 19 ALA 19 352 352 ALA ALA A . n A 1 20 TRP 20 353 353 TRP TRP A . n A 1 21 ASN 21 354 354 ASN ASN A . n A 1 22 ARG 22 355 355 ARG ARG A . n A 1 23 LYS 23 356 356 LYS LYS A . n A 1 24 ARG 24 357 357 ARG ARG A . n A 1 25 ILE 25 358 358 ILE ILE A . n A 1 26 SER 26 359 359 SER SER A . n A 1 27 ASN 27 360 360 ASN ASN A . n A 1 28 CYS 28 361 361 CYS CYS A . n A 1 29 VAL 29 362 362 VAL VAL A . n A 1 30 ALA 30 363 363 ALA ALA A . n A 1 31 ASP 31 364 364 ASP ASP A . n A 1 32 TYR 32 365 365 TYR TYR A . n A 1 33 SER 33 366 366 SER SER A . n A 1 34 VAL 34 367 367 VAL VAL A . n A 1 35 LEU 35 368 368 LEU LEU A . n A 1 36 TYR 36 369 369 TYR TYR A . n A 1 37 ASN 37 370 370 ASN ASN A . n A 1 38 SER 38 371 371 SER SER A . n A 1 39 ALA 39 372 372 ALA ALA A . n A 1 40 SER 40 373 373 SER SER A . n A 1 41 PHE 41 374 374 PHE PHE A . n A 1 42 SER 42 375 375 SER SER A . n A 1 43 THR 43 376 376 THR THR A . n A 1 44 PHE 44 377 377 PHE PHE A . n A 1 45 LYS 45 378 378 LYS LYS A . n A 1 46 CYS 46 379 379 CYS CYS A . n A 1 47 TYR 47 380 380 TYR TYR A . n A 1 48 GLY 48 381 381 GLY GLY A . n A 1 49 VAL 49 382 382 VAL VAL A . n A 1 50 SER 50 383 383 SER SER A . n A 1 51 PRO 51 384 384 PRO PRO A . n A 1 52 THR 52 385 385 THR THR A . n A 1 53 LYS 53 386 386 LYS LYS A . n A 1 54 LEU 54 387 387 LEU LEU A . n A 1 55 ASN 55 388 388 ASN ASN A . n A 1 56 ASP 56 389 389 ASP ASP A . n A 1 57 LEU 57 390 390 LEU LEU A . n A 1 58 CYS 58 391 391 CYS CYS A . n A 1 59 PHE 59 392 392 PHE PHE A . n A 1 60 THR 60 393 393 THR THR A . n A 1 61 ASN 61 394 394 ASN ASN A . n A 1 62 VAL 62 395 395 VAL VAL A . n A 1 63 TYR 63 396 396 TYR TYR A . n A 1 64 ALA 64 397 397 ALA ALA A . n A 1 65 ASP 65 398 398 ASP ASP A . n A 1 66 SER 66 399 399 SER SER A . n A 1 67 PHE 67 400 400 PHE PHE A . n A 1 68 VAL 68 401 401 VAL VAL A . n A 1 69 ILE 69 402 402 ILE ILE A . n A 1 70 ARG 70 403 403 ARG ARG A . n A 1 71 GLY 71 404 404 GLY GLY A . n A 1 72 ASP 72 405 405 ASP ASP A . n A 1 73 GLU 73 406 406 GLU GLU A . n A 1 74 VAL 74 407 407 VAL VAL A . n A 1 75 ARG 75 408 408 ARG ARG A . n A 1 76 GLN 76 409 409 GLN GLN A . n A 1 77 ILE 77 410 410 ILE ILE A . n A 1 78 ALA 78 411 411 ALA ALA A . n A 1 79 PRO 79 412 412 PRO PRO A . n A 1 80 GLY 80 413 413 GLY GLY A . n A 1 81 GLN 81 414 414 GLN GLN A . n A 1 82 THR 82 415 415 THR THR A . n A 1 83 GLY 83 416 416 GLY GLY A . n A 1 84 LYS 84 417 417 LYS LYS A . n A 1 85 ILE 85 418 418 ILE ILE A . n A 1 86 ALA 86 419 419 ALA ALA A . n A 1 87 ASP 87 420 420 ASP ASP A . n A 1 88 TYR 88 421 421 TYR TYR A . n A 1 89 ASN 89 422 422 ASN ASN A . n A 1 90 TYR 90 423 423 TYR TYR A . n A 1 91 LYS 91 424 424 LYS LYS A . n A 1 92 LEU 92 425 425 LEU LEU A . n A 1 93 PRO 93 426 426 PRO PRO A . n A 1 94 ASP 94 427 427 ASP ASP A . n A 1 95 ASP 95 428 428 ASP ASP A . n A 1 96 PHE 96 429 429 PHE PHE A . n A 1 97 THR 97 430 430 THR THR A . n A 1 98 GLY 98 431 431 GLY GLY A . n A 1 99 CYS 99 432 432 CYS CYS A . n A 1 100 VAL 100 433 433 VAL VAL A . n A 1 101 ILE 101 434 434 ILE ILE A . n A 1 102 ALA 102 435 435 ALA ALA A . n A 1 103 TRP 103 436 436 TRP TRP A . n A 1 104 ASN 104 437 437 ASN ASN A . n A 1 105 SER 105 438 438 SER SER A . n A 1 106 ASN 106 439 439 ASN ASN A . n A 1 107 ASN 107 440 440 ASN ASN A . n A 1 108 LEU 108 441 441 LEU LEU A . n A 1 109 ASP 109 442 442 ASP ASP A . n A 1 110 SER 110 443 443 SER SER A . n A 1 111 LYS 111 444 444 LYS LYS A . n A 1 112 VAL 112 445 445 VAL VAL A . n A 1 113 GLY 113 446 446 GLY GLY A . n A 1 114 GLY 114 447 447 GLY GLY A . n A 1 115 ASN 115 448 448 ASN ASN A . n A 1 116 TYR 116 449 449 TYR TYR A . n A 1 117 ASN 117 450 450 ASN ASN A . n A 1 118 TYR 118 451 451 TYR TYR A . n A 1 119 LEU 119 452 452 LEU LEU A . n A 1 120 TYR 120 453 453 TYR TYR A . n A 1 121 ARG 121 454 454 ARG ARG A . n A 1 122 LEU 122 455 455 LEU LEU A . n A 1 123 PHE 123 456 456 PHE PHE A . n A 1 124 ARG 124 457 457 ARG ARG A . n A 1 125 LYS 125 458 458 LYS LYS A . n A 1 126 SER 126 459 459 SER SER A . n A 1 127 ASN 127 460 460 ASN ASN A . n A 1 128 LEU 128 461 461 LEU LEU A . n A 1 129 LYS 129 462 462 LYS LYS A . n A 1 130 PRO 130 463 463 PRO PRO A . n A 1 131 PHE 131 464 464 PHE PHE A . n A 1 132 GLU 132 465 465 GLU GLU A . n A 1 133 ARG 133 466 466 ARG ARG A . n A 1 134 ASP 134 467 467 ASP ASP A . n A 1 135 ILE 135 468 468 ILE ILE A . n A 1 136 SER 136 469 469 SER SER A . n A 1 137 THR 137 470 470 THR THR A . n A 1 138 GLU 138 471 471 GLU GLU A . n A 1 139 ILE 139 472 472 ILE ILE A . n A 1 140 TYR 140 473 473 TYR TYR A . n A 1 141 GLN 141 474 474 GLN GLN A . n A 1 142 ALA 142 475 475 ALA ALA A . n A 1 143 GLY 143 476 476 GLY GLY A . n A 1 144 SER 144 477 477 SER SER A . n A 1 145 THR 145 478 478 THR THR A . n A 1 146 PRO 146 479 479 PRO PRO A . n A 1 147 CYS 147 480 480 CYS CYS A . n A 1 148 ASN 148 481 481 ASN ASN A . n A 1 149 GLY 149 482 482 GLY GLY A . n A 1 150 VAL 150 483 483 VAL VAL A . n A 1 151 GLU 151 484 484 GLU GLU A . n A 1 152 GLY 152 485 485 GLY GLY A . n A 1 153 PHE 153 486 486 PHE PHE A . n A 1 154 ASN 154 487 487 ASN ASN A . n A 1 155 CYS 155 488 488 CYS CYS A . n A 1 156 TYR 156 489 489 TYR TYR A . n A 1 157 PHE 157 490 490 PHE PHE A . n A 1 158 PRO 158 491 491 PRO PRO A . n A 1 159 LEU 159 492 492 LEU LEU A . n A 1 160 GLN 160 493 493 GLN GLN A . n A 1 161 SER 161 494 494 SER SER A . n A 1 162 TYR 162 495 495 TYR TYR A . n A 1 163 GLY 163 496 496 GLY GLY A . n A 1 164 PHE 164 497 497 PHE PHE A . n A 1 165 GLN 165 498 498 GLN GLN A . n A 1 166 PRO 166 499 499 PRO PRO A . n A 1 167 THR 167 500 500 THR THR A . n A 1 168 ASN 168 501 501 ASN ASN A . n A 1 169 GLY 169 502 502 GLY GLY A . n A 1 170 VAL 170 503 503 VAL VAL A . n A 1 171 GLY 171 504 504 GLY GLY A . n A 1 172 TYR 172 505 505 TYR TYR A . n A 1 173 GLN 173 506 506 GLN GLN A . n A 1 174 PRO 174 507 507 PRO PRO A . n A 1 175 TYR 175 508 508 TYR TYR A . n A 1 176 ARG 176 509 509 ARG ARG A . n A 1 177 VAL 177 510 510 VAL VAL A . n A 1 178 VAL 178 511 511 VAL VAL A . n A 1 179 VAL 179 512 512 VAL VAL A . n A 1 180 LEU 180 513 513 LEU LEU A . n A 1 181 SER 181 514 514 SER SER A . n A 1 182 PHE 182 515 515 PHE PHE A . n A 1 183 GLU 183 516 516 GLU GLU A . n A 1 184 LEU 184 517 517 LEU LEU A . n A 1 185 LEU 185 518 518 LEU LEU A . n A 1 186 HIS 186 519 519 HIS HIS A . n A 1 187 ALA 187 520 520 ALA ALA A . n A 1 188 PRO 188 521 521 PRO PRO A . n A 1 189 ALA 189 522 522 ALA ALA A . n A 1 190 THR 190 523 523 THR THR A . n A 1 191 VAL 191 524 524 VAL VAL A . n A 1 192 CYS 192 525 525 CYS CYS A . n A 1 193 GLY 193 526 526 GLY GLY A . n A 1 194 PRO 194 527 527 PRO PRO A . n B 2 1 ILE 1 2 2 ILE ILE D . n B 2 2 VAL 2 3 3 VAL VAL D . n B 2 3 LEU 3 4 4 LEU LEU D . n B 2 4 THR 4 5 5 THR THR D . n B 2 5 GLN 5 6 6 GLN GLN D . n B 2 6 SER 6 7 7 SER SER D . n B 2 7 PRO 7 8 8 PRO PRO D . n B 2 8 THR 8 9 9 THR THR D . n B 2 9 LEU 9 10 10 LEU LEU D . n B 2 10 SER 10 11 11 SER SER D . n B 2 11 LEU 11 12 12 LEU LEU D . n B 2 12 SER 12 13 13 SER SER D . n B 2 13 PRO 13 14 14 PRO PRO D . n B 2 14 GLY 14 15 15 GLY GLY D . n B 2 15 GLU 15 16 16 GLU GLU D . n B 2 16 ARG 16 17 17 ARG ARG D . n B 2 17 ALA 17 18 18 ALA ALA D . n B 2 18 THR 18 19 19 THR THR D . n B 2 19 LEU 19 20 20 LEU LEU D . n B 2 20 SER 20 21 21 SER SER D . n B 2 21 CYS 21 22 22 CYS CYS D . n B 2 22 ARG 22 23 23 ARG ARG D . n B 2 23 ALA 23 24 24 ALA ALA D . n B 2 24 SER 24 25 25 SER SER D . n B 2 25 GLU 25 26 26 GLU GLU D . n B 2 26 SER 26 27 27 SER SER D . n B 2 27 VAL 27 28 28 VAL VAL D . n B 2 28 ASP 28 29 29 ASP ASP D . n B 2 29 ASN 29 30 30 ASN ASN D . n B 2 30 TYR 30 31 31 TYR TYR D . n B 2 31 GLY 31 32 32 GLY GLY D . n B 2 32 ILE 32 33 33 ILE ILE D . n B 2 33 SER 33 34 34 SER SER D . n B 2 34 PHE 34 35 35 PHE PHE D . n B 2 35 MET 35 36 36 MET MET D . n B 2 36 ASN 36 37 37 ASN ASN D . n B 2 37 TRP 37 38 38 TRP TRP D . n B 2 38 PHE 38 39 39 PHE PHE D . n B 2 39 GLN 39 40 40 GLN GLN D . n B 2 40 GLN 40 41 41 GLN GLN D . n B 2 41 LYS 41 42 42 LYS LYS D . n B 2 42 PRO 42 43 43 PRO PRO D . n B 2 43 GLY 43 44 44 GLY GLY D . n B 2 44 GLN 44 45 45 GLN GLN D . n B 2 45 ALA 45 46 46 ALA ALA D . n B 2 46 PRO 46 47 47 PRO PRO D . n B 2 47 ARG 47 48 48 ARG ARG D . n B 2 48 LEU 48 49 49 LEU LEU D . n B 2 49 LEU 49 50 50 LEU LEU D . n B 2 50 ILE 50 51 51 ILE ILE D . n B 2 51 TYR 51 52 52 TYR TYR D . n B 2 52 ALA 52 53 53 ALA ALA D . n B 2 53 ALA 53 54 54 ALA ALA D . n B 2 54 SER 54 55 55 SER SER D . n B 2 55 ASN 55 56 56 ASN ASN D . n B 2 56 GLN 56 57 57 GLN GLN D . n B 2 57 GLY 57 58 58 GLY GLY D . n B 2 58 SER 58 59 59 SER SER D . n B 2 59 GLY 59 60 60 GLY GLY D . n B 2 60 ILE 60 61 61 ILE ILE D . n B 2 61 PRO 61 62 62 PRO PRO D . n B 2 62 SER 62 63 63 SER SER D . n B 2 63 ARG 63 64 64 ARG ARG D . n B 2 64 PHE 64 65 65 PHE PHE D . n B 2 65 SER 65 66 66 SER SER D . n B 2 66 GLY 66 67 67 GLY GLY D . n B 2 67 SER 67 68 68 SER SER D . n B 2 68 GLY 68 69 69 GLY GLY D . n B 2 69 SER 69 70 70 SER SER D . n B 2 70 GLY 70 71 71 GLY GLY D . n B 2 71 THR 71 72 72 THR THR D . n B 2 72 ASP 72 73 73 ASP ASP D . n B 2 73 PHE 73 74 74 PHE PHE D . n B 2 74 SER 74 75 75 SER SER D . n B 2 75 LEU 75 76 76 LEU LEU D . n B 2 76 THR 76 77 77 THR THR D . n B 2 77 ILE 77 78 78 ILE ILE D . n B 2 78 SER 78 79 79 SER SER D . n B 2 79 SER 79 80 80 SER SER D . n B 2 80 LEU 80 81 81 LEU LEU D . n B 2 81 GLU 81 82 82 GLU GLU D . n B 2 82 PRO 82 83 83 PRO PRO D . n B 2 83 GLU 83 84 84 GLU GLU D . n B 2 84 ASP 84 85 85 ASP ASP D . n B 2 85 PHE 85 86 86 PHE PHE D . n B 2 86 ALA 86 87 87 ALA ALA D . n B 2 87 VAL 87 88 88 VAL VAL D . n B 2 88 TYR 88 89 89 TYR TYR D . n B 2 89 PHE 89 90 90 PHE PHE D . n B 2 90 CYS 90 91 91 CYS CYS D . n B 2 91 GLN 91 92 92 GLN GLN D . n B 2 92 GLN 92 93 93 GLN GLN D . n B 2 93 SER 93 94 94 SER SER D . n B 2 94 LYS 94 95 95 LYS LYS D . n B 2 95 GLU 95 96 96 GLU GLU D . n B 2 96 VAL 96 97 97 VAL VAL D . n B 2 97 PRO 97 98 98 PRO PRO D . n B 2 98 ARG 98 99 99 ARG ARG D . n B 2 99 ILE 99 100 100 ILE ILE D . n B 2 100 PHE 100 101 101 PHE PHE D . n B 2 101 GLY 101 102 102 GLY GLY D . n B 2 102 GLN 102 103 103 GLN GLN D . n B 2 103 GLY 103 104 104 GLY GLY D . n B 2 104 THR 104 105 105 THR THR D . n B 2 105 LYS 105 106 106 LYS LYS D . n B 2 106 VAL 106 107 107 VAL VAL D . n B 2 107 GLU 107 108 108 GLU GLU D . n B 2 108 ILE 108 109 109 ILE ILE D . n B 2 109 LEU 109 110 110 LEU LEU D . n B 2 110 LYS 110 111 111 LYS LYS D . n C 3 1 VAL 1 2 2 VAL VAL E . n C 3 2 LYS 2 3 3 LYS LYS E . n C 3 3 LEU 3 4 4 LEU LEU E . n C 3 4 VAL 4 5 5 VAL VAL E . n C 3 5 GLU 5 6 6 GLU GLU E . n C 3 6 SER 6 7 7 SER SER E . n C 3 7 GLY 7 8 8 GLY GLY E . n C 3 8 GLY 8 9 9 GLY GLY E . n C 3 9 GLY 9 10 10 GLY GLY E . n C 3 10 LEU 10 11 11 LEU LEU E . n C 3 11 VAL 11 12 12 VAL VAL E . n C 3 12 LYS 12 13 13 LYS LYS E . n C 3 13 PRO 13 14 14 PRO PRO E . n C 3 14 GLY 14 15 15 GLY GLY E . n C 3 15 GLY 15 16 16 GLY GLY E . n C 3 16 SER 16 17 17 SER SER E . n C 3 17 LEU 17 18 18 LEU LEU E . n C 3 18 ARG 18 19 19 ARG ARG E . n C 3 19 LEU 19 20 20 LEU LEU E . n C 3 20 SER 20 21 21 SER SER E . n C 3 21 CYS 21 22 22 CYS CYS E . n C 3 22 ALA 22 23 23 ALA ALA E . n C 3 23 ALA 23 24 24 ALA ALA E . n C 3 24 SER 24 25 25 SER SER E . n C 3 25 GLY 25 26 26 GLY GLY E . n C 3 26 PHE 26 27 27 PHE PHE E . n C 3 27 THR 27 28 28 THR THR E . n C 3 28 PHE 28 29 29 PHE PHE E . n C 3 29 THR 29 30 30 THR THR E . n C 3 30 ASN 30 31 31 ASN ASN E . n C 3 31 TYR 31 32 32 TYR TYR E . n C 3 32 GLY 32 33 33 GLY GLY E . n C 3 33 MET 33 34 34 MET MET E . n C 3 34 SER 34 35 35 SER SER E . n C 3 35 TRP 35 36 36 TRP TRP E . n C 3 36 VAL 36 37 37 VAL VAL E . n C 3 37 ARG 37 38 38 ARG ARG E . n C 3 38 GLN 38 39 39 GLN GLN E . n C 3 39 ALA 39 40 40 ALA ALA E . n C 3 40 PRO 40 41 41 PRO PRO E . n C 3 41 GLY 41 42 42 GLY GLY E . n C 3 42 LYS 42 43 43 LYS LYS E . n C 3 43 ARG 43 44 44 ARG ARG E . n C 3 44 LEU 44 45 45 LEU LEU E . n C 3 45 GLU 45 46 46 GLU GLU E . n C 3 46 TRP 46 47 47 TRP TRP E . n C 3 47 VAL 47 48 48 VAL VAL E . n C 3 48 ALA 48 49 49 ALA ALA E . n C 3 49 GLU 49 50 50 GLU GLU E . n C 3 50 ILE 50 51 51 ILE ILE E . n C 3 51 SER 51 52 52 SER SER E . n C 3 52 SER 52 53 53 SER SER E . n C 3 53 GLY 53 54 54 GLY GLY E . n C 3 54 GLY 54 55 55 GLY GLY E . n C 3 55 SER 55 56 56 SER SER E . n C 3 56 TYR 56 57 57 TYR TYR E . n C 3 57 THR 57 58 58 THR THR E . n C 3 58 TYR 58 59 59 TYR TYR E . n C 3 59 TYR 59 60 60 TYR TYR E . n C 3 60 PRO 60 61 61 PRO PRO E . n C 3 61 ASP 61 62 62 ASP ASP E . n C 3 62 THR 62 63 63 THR THR E . n C 3 63 VAL 63 64 64 VAL VAL E . n C 3 64 THR 64 65 65 THR THR E . n C 3 65 GLY 65 66 66 GLY GLY E . n C 3 66 ARG 66 67 67 ARG ARG E . n C 3 67 PHE 67 68 68 PHE PHE E . n C 3 68 THR 68 69 69 THR THR E . n C 3 69 ILE 69 70 70 ILE ILE E . n C 3 70 SER 70 71 71 SER SER E . n C 3 71 ARG 71 72 72 ARG ARG E . n C 3 72 ASP 72 73 73 ASP ASP E . n C 3 73 ASN 73 74 74 ASN ASN E . n C 3 74 ALA 74 75 75 ALA ALA E . n C 3 75 LYS 75 76 76 LYS LYS E . n C 3 76 ASN 76 77 77 ASN ASN E . n C 3 77 THR 77 78 78 THR THR E . n C 3 78 LEU 78 79 79 LEU LEU E . n C 3 79 TYR 79 80 80 TYR TYR E . n C 3 80 LEU 80 81 81 LEU LEU E . n C 3 81 GLN 81 82 82 GLN GLN E . n C 3 82 MET 82 83 83 MET MET E . n C 3 83 ASN 83 84 84 ASN ASN E . n C 3 84 SER 84 85 85 SER SER E . n C 3 85 LEU 85 86 86 LEU LEU E . n C 3 86 ARG 86 87 87 ARG ARG E . n C 3 87 ALA 87 88 88 ALA ALA E . n C 3 88 GLU 88 89 89 GLU GLU E . n C 3 89 ASP 89 90 90 ASP ASP E . n C 3 90 THR 90 91 91 THR THR E . n C 3 91 ALA 91 92 92 ALA ALA E . n C 3 92 VAL 92 93 93 VAL VAL E . n C 3 93 TYR 93 94 94 TYR TYR E . n C 3 94 TYR 94 95 95 TYR TYR E . n C 3 95 CYS 95 96 96 CYS CYS E . n C 3 96 ALA 96 97 97 ALA ALA E . n C 3 97 ARG 97 98 98 ARG ARG E . n C 3 98 PHE 98 99 99 PHE PHE E . n C 3 99 ARG 99 100 100 ARG ARG E . n C 3 100 TYR 100 101 101 TYR TYR E . n C 3 101 GLY 101 102 102 GLY GLY E . n C 3 102 GLY 102 103 103 GLY GLY E . n C 3 103 GLY 103 104 104 GLY GLY E . n C 3 104 GLY 104 105 105 GLY GLY E . n C 3 105 THR 105 106 106 THR THR E . n C 3 106 VAL 106 107 107 VAL VAL E . n C 3 107 ASP 107 108 108 ASP ASP E . n C 3 108 TYR 108 109 109 TYR TYR E . n C 3 109 TRP 109 110 110 TRP TRP E . n C 3 110 GLY 110 111 111 GLY GLY E . n C 3 111 GLN 111 112 112 GLN GLN E . n C 3 112 GLY 112 113 113 GLY GLY E . n C 3 113 THR 113 114 114 THR THR E . n C 3 114 LEU 114 115 115 LEU LEU E . n C 3 115 VAL 115 116 116 VAL VAL E . n C 3 116 THR 116 117 117 THR THR E . n C 3 117 VAL 117 118 118 VAL VAL E . n C 3 118 SER 118 119 119 SER SER E . n C 3 119 SER 119 120 120 SER SER E . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2900 ? 1 MORE -17 ? 1 'SSA (A^2)' 20680 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2021-06-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.10.1_2155: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 7CYH _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7CYH _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 393321 _em_3d_reconstruction.resolution 3.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8 _em_buffer.specimen_id 1 _em_buffer.name ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 ? 'Complex of SARS-CoV-2 RBD and its neutralizing antibody HB27' RECOMBINANT COMPLEX '1, 2, 3' ? ? 2 1 ? 'SARS-CoV-2 RBD' RECOMBINANT COMPLEX 1 ? ? 3 1 ? 'HB27 antibody' RECOMBINANT COMPLEX 2,3 ? ? # _em_imaging.id 1 _em_imaging.entry_id 7CYH _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7CYH _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7CYH _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG1 A THR 393 ? ? OE1 A GLU 516 ? ? 2.09 2 1 O E THR 30 ? ? OG E SER 53 ? ? 2.09 3 1 O E SER 52 ? ? NH1 E ARG 72 ? ? 2.14 4 1 NH1 A ARG 457 ? ? OG A SER 459 ? ? 2.17 5 1 O D THR 5 ? ? N D ARG 23 ? ? 2.18 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 PHE _pdbx_validate_rmsd_angle.auth_seq_id_1 497 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLN _pdbx_validate_rmsd_angle.auth_seq_id_2 498 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLN _pdbx_validate_rmsd_angle.auth_seq_id_3 498 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 105.12 _pdbx_validate_rmsd_angle.angle_target_value 121.70 _pdbx_validate_rmsd_angle.angle_deviation -16.58 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 337 ? ? -86.78 48.75 2 1 THR A 345 ? ? -80.34 -74.12 3 1 LEU A 368 ? ? -86.80 -74.35 4 1 ALA A 372 ? ? 57.24 19.83 5 1 PHE A 377 ? ? 173.71 164.50 6 1 TYR A 380 ? ? -121.48 -75.89 7 1 THR A 393 ? ? -131.07 -71.47 8 1 ALA A 411 ? ? 174.50 177.08 9 1 ILE A 418 ? ? -82.61 -72.67 10 1 TYR A 421 ? ? -98.91 -72.71 11 1 LEU A 441 ? ? -96.37 -64.55 12 1 LEU A 455 ? ? -101.11 -64.41 13 1 LEU A 517 ? ? 62.40 -117.39 14 1 GLU D 26 ? ? 51.57 -137.23 15 1 ASP D 29 ? ? 56.30 -112.99 16 1 ILE D 33 ? ? 74.82 -20.58 17 1 MET D 36 ? ? 60.77 -153.21 18 1 ASN D 37 ? ? 174.66 175.08 19 1 LEU D 50 ? ? -119.44 -77.23 20 1 ALA D 53 ? ? 56.79 19.63 21 1 ALA D 54 ? ? 62.08 -11.87 22 1 GLN D 57 ? ? 59.40 -160.28 23 1 SER D 80 ? ? 50.85 72.12 24 1 SER D 94 ? ? 179.42 175.27 25 1 LYS D 95 ? ? 66.77 -15.97 26 1 VAL D 97 ? ? 69.84 167.76 27 1 ILE D 100 ? ? 47.81 -150.93 28 1 SER E 52 ? ? -75.32 -167.78 29 1 SER E 53 ? ? -96.26 -64.72 30 1 ASP E 62 ? ? -81.45 -73.89 31 1 THR E 63 ? ? 46.61 -119.51 32 1 ALA E 92 ? ? 179.90 179.91 33 1 ASP E 108 ? ? -102.04 -78.52 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 SER A 383 ? ? PRO A 384 ? ? -149.34 2 1 GLN D 92 ? ? GLN D 93 ? ? 149.00 3 1 GLY E 55 ? ? SER E 56 ? ? -149.77 4 1 THR E 63 ? ? VAL E 64 ? ? 146.98 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 D ILE 2 ? CG1 ? B ILE 1 CG1 2 1 Y 1 D ILE 2 ? CG2 ? B ILE 1 CG2 3 1 Y 1 D ILE 2 ? CD1 ? B ILE 1 CD1 4 1 Y 1 D VAL 28 ? CG1 ? B VAL 27 CG1 5 1 Y 1 D VAL 28 ? CG2 ? B VAL 27 CG2 6 1 Y 1 D MET 36 ? CG ? B MET 35 CG 7 1 Y 1 D MET 36 ? SD ? B MET 35 SD 8 1 Y 1 D MET 36 ? CE ? B MET 35 CE 9 1 Y 1 D ASP 73 ? CG ? B ASP 72 CG 10 1 Y 1 D ASP 73 ? OD1 ? B ASP 72 OD1 11 1 Y 1 D ASP 73 ? OD2 ? B ASP 72 OD2 12 1 Y 1 D PHE 74 ? CG ? B PHE 73 CG 13 1 Y 1 D PHE 74 ? CD1 ? B PHE 73 CD1 14 1 Y 1 D PHE 74 ? CD2 ? B PHE 73 CD2 15 1 Y 1 D PHE 74 ? CE1 ? B PHE 73 CE1 16 1 Y 1 D PHE 74 ? CE2 ? B PHE 73 CE2 17 1 Y 1 D PHE 74 ? CZ ? B PHE 73 CZ 18 1 Y 1 D ASP 85 ? CG ? B ASP 84 CG 19 1 Y 1 D ASP 85 ? OD1 ? B ASP 84 OD1 20 1 Y 1 D ASP 85 ? OD2 ? B ASP 84 OD2 21 1 Y 1 D LYS 95 ? CG ? B LYS 94 CG 22 1 Y 1 D LYS 95 ? CD ? B LYS 94 CD 23 1 Y 1 D LYS 95 ? CE ? B LYS 94 CE 24 1 Y 1 D LYS 95 ? NZ ? B LYS 94 NZ 25 1 Y 1 D GLN 103 ? CG ? B GLN 102 CG 26 1 Y 1 D GLN 103 ? CD ? B GLN 102 CD 27 1 Y 1 D GLN 103 ? OE1 ? B GLN 102 OE1 28 1 Y 1 D GLN 103 ? NE2 ? B GLN 102 NE2 29 1 Y 1 D LYS 106 ? CG ? B LYS 105 CG 30 1 Y 1 D LYS 106 ? CD ? B LYS 105 CD 31 1 Y 1 D LYS 106 ? CE ? B LYS 105 CE 32 1 Y 1 D LYS 106 ? NZ ? B LYS 105 NZ 33 1 Y 1 E GLU 50 ? CG ? C GLU 49 CG 34 1 Y 1 E GLU 50 ? CD ? C GLU 49 CD 35 1 Y 1 E GLU 50 ? OE1 ? C GLU 49 OE1 36 1 Y 1 E GLU 50 ? OE2 ? C GLU 49 OE2 37 1 Y 1 E PHE 68 ? CG ? C PHE 67 CG 38 1 Y 1 E PHE 68 ? CD1 ? C PHE 67 CD1 39 1 Y 1 E PHE 68 ? CD2 ? C PHE 67 CD2 40 1 Y 1 E PHE 68 ? CE1 ? C PHE 67 CE1 41 1 Y 1 E PHE 68 ? CE2 ? C PHE 67 CE2 42 1 Y 1 E PHE 68 ? CZ ? C PHE 67 CZ # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 2 2 ? ? 2697049 ? ? 'Severe acute respiratory syndrome coronavirus 2' ? ? 3 3 ? ? 2697049 ? ? 'Severe acute respiratory syndrome coronavirus 2' ? ? # loop_ _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain 2 2 HEK293T 9606 'Homo sapiens' ? ? 3 3 HEK293T 9606 'Homo sapiens' ? ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #