data_7D0X # _entry.id 7D0X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7D0X pdb_00007d0x 10.2210/pdb7d0x/pdb WWPDB D_1300018151 ? ? BMRB 36378 ? 10.13018/BMR36378 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-02-03 2 'Structure model' 1 1 2021-02-10 3 'Structure model' 1 2 2021-04-28 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.identifier_ORCID' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 3 'Structure model' '_citation.title' 8 3 'Structure model' '_citation_author.identifier_ORCID' 9 4 'Structure model' '_database_2.pdbx_DOI' 10 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7D0X _pdbx_database_status.recvd_initial_deposition_date 2020-09-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;NMR solution structures of the DNA minidumbbell formed by 5'-mCTTGXmCTTG-3 ; _pdbx_database_related.db_id 36378 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wan, L.' 1 0000-0003-3663-2678 'Guo, P.' 2 0000-0001-7760-5786 'Lam, S.L.' 3 0000-0001-5368-706X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chemistry _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0947-6539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 6740 _citation.page_last 6747 _citation.title '5-Methylcytosine Substantially Enhances the Thermal Stability of DNA Minidumbbells.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/chem.202005410 _citation.pdbx_database_id_PubMed 33501691 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wan, L.' 1 0000-0003-3663-2678 primary 'Yi, J.' 2 ? primary 'Lam, S.L.' 3 0000-0001-5368-706X primary 'Lee, H.K.' 4 0000-0002-2052-4069 primary 'Guo, P.' 5 0000-0001-7760-5786 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*(MCY)P*TP*TP*GP*(3DR)P*(5CM)P*TP*TP*G)-3') ; 2536.759 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(MCY)(DT)(DT)(DG)(3DR)(5CM)(DT)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CTTGNCTTG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SODIUM ION' _pdbx_entity_nonpoly.comp_id NA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MCY n 1 2 DT n 1 3 DT n 1 4 DG n 1 5 3DR n 1 6 5CM n 1 7 DT n 1 8 DT n 1 9 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3DR 'DNA linking' . "1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE" 'ABASIC DIDEOXYRIBOSE' 'C5 H11 O6 P' 198.111 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 MCY 'DNA linking' n "5-METHYL-2'-DEOXYCYTIDINE" ? 'C10 H15 N3 O4' 241.244 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MCY 1 1 1 MCY MC1 A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 3DR 5 5 5 3DR DX A . n A 1 6 5CM 6 6 6 5CM DMC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DG 9 9 9 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 101 10 NA NA A . C 2 NA 1 102 11 NA NA A . D 2 NA 1 103 12 NA NA A . E 2 NA 1 104 13 NA NA A . F 2 NA 1 105 14 NA NA A . G 2 NA 1 106 15 NA NA A . H 2 NA 1 107 16 NA NA A . I 2 NA 1 108 17 NA NA A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7D0X _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7D0X _struct.title ;NMR solution structures of the DNA minidumbbell formed by 5'-mCTTGXmCTTG-3' ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7D0X _struct_keywords.text 'minidumbbell, 5-methylcytosine, abasic site, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7D0X _struct_ref.pdbx_db_accession 7D0X _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7D0X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 9 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7D0X _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 9 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1980 ? 1 MORE -85 ? 1 'SSA (A^2)' 1380 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MCY 1 "O3'" ? ? ? 1_555 A DT 2 P ? ? A MCY 1 A DT 2 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale2 covale both ? A DG 4 "O3'" ? ? ? 1_555 A 3DR 5 P ? ? A DG 4 A 3DR 5 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale3 covale both ? A 3DR 5 "O3'" ? ? ? 1_555 A 5CM 6 P ? ? A 3DR 5 A 5CM 6 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale4 covale both ? A 5CM 6 "O3'" ? ? ? 1_555 A DT 7 P ? ? A 5CM 6 A DT 7 1_555 ? ? ? ? ? ? ? 1.612 ? ? metalc1 metalc ? ? A DT 2 OP1 ? ? ? 1_555 D NA . NA ? ? A DT 2 A NA 103 1_555 ? ? ? ? ? ? ? 2.136 ? ? metalc2 metalc ? ? A DT 2 OP2 ? ? ? 1_555 E NA . NA ? ? A DT 2 A NA 104 1_555 ? ? ? ? ? ? ? 2.175 ? ? metalc3 metalc ? ? A DT 3 OP2 ? ? ? 1_555 E NA . NA ? ? A DT 3 A NA 104 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc4 metalc ? ? A DT 3 OP1 ? ? ? 1_555 H NA . NA ? ? A DT 3 A NA 107 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc5 metalc ? ? A DG 4 "O3'" ? ? ? 1_555 B NA . NA ? ? A DG 4 A NA 101 1_555 ? ? ? ? ? ? ? 2.819 ? ? metalc6 metalc ? ? A DG 4 OP1 ? ? ? 1_555 H NA . NA ? ? A DG 4 A NA 107 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc7 metalc ? ? A DG 4 OP2 ? ? ? 1_555 I NA . NA ? ? A DG 4 A NA 108 1_555 ? ? ? ? ? ? ? 2.186 ? ? metalc8 metalc ? ? A 3DR 5 OP1 ? ? ? 1_555 B NA . NA ? ? A 3DR 5 A NA 101 1_555 ? ? ? ? ? ? ? 2.170 ? ? metalc9 metalc ? ? A 3DR 5 OP2 ? ? ? 1_555 I NA . NA ? ? A 3DR 5 A NA 108 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc10 metalc ? ? A 5CM 6 OP1 ? ? ? 1_555 B NA . NA ? ? A 5CM 6 A NA 101 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc11 metalc ? ? A 5CM 6 OP2 ? ? ? 1_555 G NA . NA ? ? A 5CM 6 A NA 106 1_555 ? ? ? ? ? ? ? 2.175 ? ? metalc12 metalc ? ? A DT 7 O2 ? ? ? 1_555 F NA . NA ? ? A DT 7 A NA 105 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc13 metalc ? ? A DT 7 OP2 ? ? ? 1_555 G NA . NA ? ? A DT 7 A NA 106 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc14 metalc ? ? A DT 8 OP1 ? ? ? 1_555 C NA . NA ? ? A DT 8 A NA 102 1_555 ? ? ? ? ? ? ? 2.397 ? ? metalc15 metalc ? ? A DT 8 OP2 ? ? ? 1_555 C NA . NA ? ? A DT 8 A NA 102 1_555 ? ? ? ? ? ? ? 2.346 ? ? metalc16 metalc ? ? A DG 9 OP2 ? ? ? 1_555 C NA . NA ? ? A DG 9 A NA 102 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc17 metalc ? ? A DG 9 OP1 ? ? ? 1_555 F NA . NA ? ? A DG 9 A NA 105 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc18 metalc ? ? A DG 9 "O4'" ? ? ? 1_555 F NA . NA ? ? A DG 9 A NA 105 1_555 ? ? ? ? ? ? ? 2.895 ? ? hydrog1 hydrog ? ? A MCY 1 N3 ? ? ? 1_555 A DG 4 N1 ? ? A MCY 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A MCY 1 N4 ? ? ? 1_555 A DG 4 O6 ? ? A MCY 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A MCY 1 O2 ? ? ? 1_555 A DG 4 N2 ? ? A MCY 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DT 7 O4 ? ? A DT 2 A DT 7 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DT 7 N3 ? ? A DT 2 A DT 7 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog6 hydrog ? ? A 5CM 6 N3 ? ? ? 1_555 A DG 9 N1 ? ? A 5CM 6 A DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A 5CM 6 N4 ? ? ? 1_555 A DG 9 O6 ? ? A 5CM 6 A DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A 5CM 6 O2 ? ? ? 1_555 A DG 9 N2 ? ? A 5CM 6 A DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A DT 2 ? A DT 2 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP2 ? A DT 3 ? A DT 3 ? 1_555 139.0 ? 2 OP1 ? A DT 3 ? A DT 3 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 OP1 ? A DG 4 ? A DG 4 ? 1_555 127.0 ? 3 "O3'" ? A DG 4 ? A DG 4 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP1 ? A 3DR 5 ? A 3DR 5 ? 1_555 56.9 ? 4 "O3'" ? A DG 4 ? A DG 4 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP1 ? A 5CM 6 ? A 5CM 6 ? 1_555 110.4 ? 5 OP1 ? A 3DR 5 ? A 3DR 5 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP1 ? A 5CM 6 ? A 5CM 6 ? 1_555 136.9 ? 6 OP2 ? A DG 4 ? A DG 4 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 OP2 ? A 3DR 5 ? A 3DR 5 ? 1_555 135.4 ? 7 OP2 ? A 5CM 6 ? A 5CM 6 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 OP2 ? A DT 7 ? A DT 7 ? 1_555 137.3 ? 8 O2 ? A DT 7 ? A DT 7 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP1 ? A DG 9 ? A DG 9 ? 1_555 115.8 ? 9 O2 ? A DT 7 ? A DT 7 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 "O4'" ? A DG 9 ? A DG 9 ? 1_555 175.3 ? 10 OP1 ? A DG 9 ? A DG 9 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 "O4'" ? A DG 9 ? A DG 9 ? 1_555 67.0 ? 11 OP1 ? A DT 8 ? A DT 8 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A DT 8 ? A DT 8 ? 1_555 62.9 ? 12 OP1 ? A DT 8 ? A DT 8 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A DG 9 ? A DG 9 ? 1_555 128.0 ? 13 OP2 ? A DT 8 ? A DT 8 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A DG 9 ? A DG 9 ? 1_555 132.2 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.22 122.90 -3.68 0.60 N 2 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.89 108.30 3.59 0.30 N 3 1 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.23 122.90 -3.67 0.60 N 4 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.67 108.30 2.37 0.30 N 5 1 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.55 122.30 -3.75 0.60 N 6 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 110.00 106.00 4.00 0.60 N 7 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.25 122.90 -3.65 0.60 N 8 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.63 108.30 3.33 0.30 N 9 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.65 108.30 3.35 0.30 N 10 2 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.72 108.30 3.42 0.30 N 11 2 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.10 122.90 -3.80 0.60 N 12 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.41 108.30 2.11 0.30 N 13 2 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.50 122.30 -3.80 0.60 N 14 2 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 110.08 106.00 4.08 0.60 N 15 2 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.10 122.90 -3.80 0.60 N 16 2 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.38 108.30 3.08 0.30 N 17 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.15 108.30 1.85 0.30 N 18 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.19 108.30 2.89 0.30 N 19 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.34 108.30 4.04 0.30 N 20 3 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.68 122.30 -3.62 0.60 N 21 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.43 108.30 2.13 0.30 N 22 4 N3 A DT 2 ? ? C2 A DT 2 ? ? O2 A DT 2 ? ? 118.58 122.30 -3.72 0.60 N 23 4 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.25 108.30 1.95 0.30 N 24 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.23 108.30 2.93 0.30 N 25 4 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.41 108.30 3.11 0.30 N 26 4 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.24 108.30 1.94 0.30 N 27 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.84 108.30 3.54 0.30 N 28 5 N3 A DT 2 ? ? C2 A DT 2 ? ? O2 A DT 2 ? ? 118.69 122.30 -3.61 0.60 N 29 5 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.26 122.90 -3.64 0.60 N 30 5 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.16 122.90 -3.74 0.60 N 31 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.55 108.30 3.25 0.30 N 32 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.50 108.30 2.20 0.30 N 33 5 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 117.92 122.30 -4.38 0.60 N 34 5 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 110.02 106.00 4.02 0.60 N 35 5 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.64 108.30 3.34 0.30 N 36 6 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.22 108.30 3.92 0.30 N 37 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.48 108.30 2.18 0.30 N 38 6 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.77 108.30 3.47 0.30 N 39 6 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.27 122.90 -3.63 0.60 N 40 6 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DG 9 ? ? 128.03 119.70 8.33 1.20 Y 41 7 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.05 108.30 2.75 0.30 N 42 7 N3 A DT 2 ? ? C2 A DT 2 ? ? O2 A DT 2 ? ? 118.65 122.30 -3.65 0.60 N 43 7 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.26 122.90 -3.64 0.60 N 44 7 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.27 122.90 -3.63 0.60 N 45 7 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.40 108.30 2.10 0.30 N 46 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.27 108.30 1.97 0.30 N 47 7 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 117.93 122.30 -4.37 0.60 N 48 7 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 110.02 106.00 4.02 0.60 N 49 7 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.17 122.90 -3.73 0.60 N 50 7 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.31 108.30 3.01 0.30 N 51 8 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.90 108.30 2.60 0.30 N 52 8 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.06 108.30 3.76 0.30 N 53 8 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.17 122.90 -3.73 0.60 N 54 8 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.62 108.30 2.32 0.30 N 55 8 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.66 122.30 -3.64 0.60 N 56 8 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 109.96 106.00 3.96 0.60 N 57 8 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.41 108.30 2.11 0.30 N 58 9 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.07 108.30 2.77 0.30 N 59 9 N3 A DT 2 ? ? C2 A DT 2 ? ? O2 A DT 2 ? ? 118.62 122.30 -3.68 0.60 N 60 9 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.23 122.90 -3.67 0.60 N 61 9 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.24 122.90 -3.66 0.60 N 62 9 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.29 108.30 2.99 0.30 N 63 9 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.55 122.30 -3.75 0.60 N 64 9 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 110.00 106.00 4.00 0.60 N 65 9 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.88 108.30 2.58 0.30 N 66 10 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.79 108.30 2.49 0.30 N 67 10 N3 A DT 2 ? ? C2 A DT 2 ? ? O2 A DT 2 ? ? 118.57 122.30 -3.73 0.60 N 68 10 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.26 122.90 -3.64 0.60 N 69 10 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.15 108.30 2.85 0.30 N 70 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.40 108.30 3.10 0.30 N 71 10 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 127.78 119.70 8.08 1.20 Y 72 10 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 109.68 106.00 3.68 0.60 N 73 10 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.28 122.90 -3.62 0.60 N 74 11 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.86 108.30 2.56 0.30 N 75 11 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.27 122.90 -3.63 0.60 N 76 11 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.46 108.30 3.16 0.30 N 77 11 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.03 122.90 -3.87 0.60 N 78 11 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.77 108.30 2.47 0.30 N 79 11 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.53 122.30 -3.77 0.60 N 80 12 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.47 108.30 3.17 0.30 N 81 12 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 127.82 119.70 8.12 1.20 Y 82 12 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.17 122.90 -3.73 0.60 N 83 12 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.30 108.30 4.00 0.30 N 84 12 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 128.55 119.70 8.85 1.20 Y 85 12 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.29 122.90 -3.61 0.60 N 86 12 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.33 108.30 3.03 0.30 N 87 13 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.41 108.30 2.11 0.30 N 88 13 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.27 122.30 -4.03 0.60 N 89 13 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 110.13 106.00 4.13 0.60 N 90 13 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.09 108.30 2.79 0.30 N 91 14 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.54 108.30 4.24 0.30 N 92 14 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.48 108.30 3.18 0.30 N 93 14 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 115.21 119.90 -4.69 0.70 N 94 14 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.79 108.30 2.49 0.30 N 95 14 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 117.74 122.30 -4.56 0.60 N 96 14 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 110.07 106.00 4.07 0.60 N 97 14 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.25 122.90 -3.65 0.60 N 98 14 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.17 108.30 2.87 0.30 N 99 15 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 128.64 119.70 8.94 1.20 Y 100 15 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 113.97 108.30 5.67 0.30 N 101 16 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.94 108.30 4.64 0.30 N 102 16 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 127.35 119.70 7.65 1.20 Y 103 16 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.00 108.30 3.70 0.30 N 104 17 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.59 108.30 3.29 0.30 N 105 17 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.23 108.30 1.93 0.30 N 106 17 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.42 122.30 -3.88 0.60 N 107 17 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 109.63 106.00 3.63 0.60 N 108 17 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.28 122.90 -3.62 0.60 N 109 17 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.23 108.30 1.93 0.30 N 110 18 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.66 108.30 2.36 0.30 N 111 18 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.20 122.90 -3.70 0.60 N 112 18 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.02 108.30 4.72 0.30 N 113 18 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 127.38 119.70 7.68 1.20 Y 114 18 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.81 108.30 3.51 0.30 N 115 19 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.24 122.90 -3.66 0.60 N 116 19 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.13 108.30 2.83 0.30 N 117 19 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 114.60 108.30 6.30 0.30 N 118 19 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 127.95 119.70 8.25 1.20 Y 119 19 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.55 108.30 3.25 0.30 N 120 20 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.06 108.30 3.76 0.30 N 121 20 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.30 122.90 -3.60 0.60 N 122 20 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.18 108.30 2.88 0.30 N 123 20 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.46 108.30 2.16 0.30 N 124 20 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 117.87 122.30 -4.43 0.60 N 125 20 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 109.94 106.00 3.94 0.60 N 126 20 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.12 108.30 2.82 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 2 ? ? 0.074 'SIDE CHAIN' 2 1 DT A 3 ? ? 0.075 'SIDE CHAIN' 3 1 DT A 7 ? ? 0.087 'SIDE CHAIN' 4 2 DT A 2 ? ? 0.082 'SIDE CHAIN' 5 2 DT A 3 ? ? 0.079 'SIDE CHAIN' 6 2 DT A 7 ? ? 0.066 'SIDE CHAIN' 7 3 DT A 2 ? ? 0.105 'SIDE CHAIN' 8 3 DG A 9 ? ? 0.072 'SIDE CHAIN' 9 4 DT A 2 ? ? 0.101 'SIDE CHAIN' 10 4 DT A 7 ? ? 0.115 'SIDE CHAIN' 11 4 DG A 9 ? ? 0.056 'SIDE CHAIN' 12 5 DT A 2 ? ? 0.125 'SIDE CHAIN' 13 5 DT A 3 ? ? 0.087 'SIDE CHAIN' 14 5 DG A 9 ? ? 0.063 'SIDE CHAIN' 15 6 DT A 2 ? ? 0.067 'SIDE CHAIN' 16 6 DT A 3 ? ? 0.105 'SIDE CHAIN' 17 6 DT A 7 ? ? 0.082 'SIDE CHAIN' 18 7 DT A 2 ? ? 0.131 'SIDE CHAIN' 19 7 DT A 3 ? ? 0.091 'SIDE CHAIN' 20 8 DT A 2 ? ? 0.088 'SIDE CHAIN' 21 8 DT A 3 ? ? 0.085 'SIDE CHAIN' 22 8 DT A 7 ? ? 0.084 'SIDE CHAIN' 23 9 DT A 2 ? ? 0.107 'SIDE CHAIN' 24 9 DT A 3 ? ? 0.100 'SIDE CHAIN' 25 10 DT A 2 ? ? 0.109 'SIDE CHAIN' 26 10 DT A 3 ? ? 0.086 'SIDE CHAIN' 27 11 DT A 2 ? ? 0.072 'SIDE CHAIN' 28 11 DT A 3 ? ? 0.062 'SIDE CHAIN' 29 11 DT A 7 ? ? 0.088 'SIDE CHAIN' 30 12 DG A 9 ? ? 0.066 'SIDE CHAIN' 31 13 DT A 2 ? ? 0.077 'SIDE CHAIN' 32 14 DT A 2 ? ? 0.117 'SIDE CHAIN' 33 14 DG A 9 ? ? 0.056 'SIDE CHAIN' 34 15 DT A 2 ? ? 0.066 'SIDE CHAIN' 35 15 DT A 7 ? ? 0.115 'SIDE CHAIN' 36 15 DT A 8 ? ? 0.070 'SIDE CHAIN' 37 16 DT A 2 ? ? 0.069 'SIDE CHAIN' 38 16 DT A 8 ? ? 0.068 'SIDE CHAIN' 39 17 DT A 2 ? ? 0.074 'SIDE CHAIN' 40 17 DG A 9 ? ? 0.078 'SIDE CHAIN' 41 18 DT A 8 ? ? 0.059 'SIDE CHAIN' 42 19 DT A 2 ? ? 0.090 'SIDE CHAIN' 43 19 DT A 8 ? ? 0.061 'SIDE CHAIN' 44 20 DT A 2 ? ? 0.127 'SIDE CHAIN' 45 20 DT A 3 ? ? 0.082 'SIDE CHAIN' 46 20 DG A 9 ? ? 0.054 'SIDE CHAIN' # _pdbx_entry_details.entry_id 7D0X _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 7D0X _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7D0X _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.5 mM DNA (5'-D(*(MC1)P*TP*TP*GP*(DX)P*(DMC)P*TP*TP*G)-3'), 10 mM sodium phosphate, 0.02 mM DSS, 99.96% D2O ; _pdbx_nmr_sample_details.solvent_system '99.96% D2O' _pdbx_nmr_sample_details.label mCTTGX _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*(MC1)P*TP*TP*GP*(DX)P*(DMC)P*TP*TP*G)-3') ; 0.5 ? mM 'natural abundance' 1 'sodium phosphate' 10 ? mM 'natural abundance' 1 DSS 0.02 ? mM 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 273 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 25 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.1 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err 0.1 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 2 isotropic 2 1 1 '2D 1H-1H COSY' 2 isotropic 3 1 1 '2D 1H-1H TOCSY' 2 isotropic # _pdbx_nmr_refine.entry_id 7D0X _pdbx_nmr_refine.method 'restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' TopSpin ? 'Bruker Biospin' 2 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3DR "O5'" O N N 1 3DR P P N N 2 3DR OP1 O N N 3 3DR OP2 O N N 4 3DR OP3 O N N 5 3DR "C2'" C N N 6 3DR "C5'" C N N 7 3DR "C4'" C N R 8 3DR "O4'" O N N 9 3DR "C1'" C N N 10 3DR "C3'" C N S 11 3DR "O3'" O N N 12 3DR HOP2 H N N 13 3DR HOP3 H N N 14 3DR "H2'" H N N 15 3DR "H2''" H N N 16 3DR "H5'" H N N 17 3DR "H5''" H N N 18 3DR "H4'1" H N N 19 3DR "H1'1" H N N 20 3DR "H1'2" H N N 21 3DR "H3'" H N N 22 3DR "HO3'" H N N 23 5CM N1 N N N 24 5CM C2 C N N 25 5CM N3 N N N 26 5CM C4 C N N 27 5CM C5 C N N 28 5CM C5A C N N 29 5CM C6 C N N 30 5CM O2 O N N 31 5CM N4 N N N 32 5CM "C1'" C N R 33 5CM "C2'" C N N 34 5CM "C3'" C N S 35 5CM "C4'" C N R 36 5CM "O4'" O N N 37 5CM "O3'" O N N 38 5CM "C5'" C N N 39 5CM "O5'" O N N 40 5CM P P N N 41 5CM OP1 O N N 42 5CM OP2 O N N 43 5CM OP3 O N N 44 5CM H5A1 H N N 45 5CM H5A2 H N N 46 5CM H5A3 H N N 47 5CM H6 H N N 48 5CM HN41 H N N 49 5CM HN42 H N N 50 5CM "H1'" H N N 51 5CM "H2'" H N N 52 5CM "H2''" H N N 53 5CM "H3'" H N N 54 5CM "H4'" H N N 55 5CM "HO3'" H N N 56 5CM "H5'" H N N 57 5CM "H5''" H N N 58 5CM HOP2 H N N 59 5CM HOP3 H N N 60 DG OP3 O N N 61 DG P P N N 62 DG OP1 O N N 63 DG OP2 O N N 64 DG "O5'" O N N 65 DG "C5'" C N N 66 DG "C4'" C N R 67 DG "O4'" O N N 68 DG "C3'" C N S 69 DG "O3'" O N N 70 DG "C2'" C N N 71 DG "C1'" C N R 72 DG N9 N Y N 73 DG C8 C Y N 74 DG N7 N Y N 75 DG C5 C Y N 76 DG C6 C N N 77 DG O6 O N N 78 DG N1 N N N 79 DG C2 C N N 80 DG N2 N N N 81 DG N3 N N N 82 DG C4 C Y N 83 DG HOP3 H N N 84 DG HOP2 H N N 85 DG "H5'" H N N 86 DG "H5''" H N N 87 DG "H4'" H N N 88 DG "H3'" H N N 89 DG "HO3'" H N N 90 DG "H2'" H N N 91 DG "H2''" H N N 92 DG "H1'" H N N 93 DG H8 H N N 94 DG H1 H N N 95 DG H21 H N N 96 DG H22 H N N 97 DT OP3 O N N 98 DT P P N N 99 DT OP1 O N N 100 DT OP2 O N N 101 DT "O5'" O N N 102 DT "C5'" C N N 103 DT "C4'" C N R 104 DT "O4'" O N N 105 DT "C3'" C N S 106 DT "O3'" O N N 107 DT "C2'" C N N 108 DT "C1'" C N R 109 DT N1 N N N 110 DT C2 C N N 111 DT O2 O N N 112 DT N3 N N N 113 DT C4 C N N 114 DT O4 O N N 115 DT C5 C N N 116 DT C7 C N N 117 DT C6 C N N 118 DT HOP3 H N N 119 DT HOP2 H N N 120 DT "H5'" H N N 121 DT "H5''" H N N 122 DT "H4'" H N N 123 DT "H3'" H N N 124 DT "HO3'" H N N 125 DT "H2'" H N N 126 DT "H2''" H N N 127 DT "H1'" H N N 128 DT H3 H N N 129 DT H71 H N N 130 DT H72 H N N 131 DT H73 H N N 132 DT H6 H N N 133 MCY N1 N N N 134 MCY C2 C N N 135 MCY N3 N N N 136 MCY C4 C N N 137 MCY C5 C N N 138 MCY C6 C N N 139 MCY O2 O N N 140 MCY N4 N N N 141 MCY "C1'" C N R 142 MCY "C2'" C N N 143 MCY "C3'" C N S 144 MCY "C4'" C N R 145 MCY "O4'" O N N 146 MCY "O3'" O N N 147 MCY "C5'" C N N 148 MCY "O5'" O N N 149 MCY C5A C N N 150 MCY H6 H N N 151 MCY HN41 H N N 152 MCY HN42 H N N 153 MCY "H1'" H N N 154 MCY "H2'" H N N 155 MCY "H2''" H N N 156 MCY "H3'" H N N 157 MCY "H4'" H N N 158 MCY "HO3'" H N N 159 MCY "H5'" H N N 160 MCY "H5''" H N N 161 MCY "HO5'" H N N 162 MCY H5A1 H N N 163 MCY H5A2 H N N 164 MCY H5A3 H N N 165 NA NA NA N N 166 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3DR "O5'" P sing N N 1 3DR "O5'" "C5'" sing N N 2 3DR P OP1 doub N N 3 3DR P OP2 sing N N 4 3DR P OP3 sing N N 5 3DR OP2 HOP2 sing N N 6 3DR OP3 HOP3 sing N N 7 3DR "C2'" "C1'" sing N N 8 3DR "C2'" "C3'" sing N N 9 3DR "C2'" "H2'" sing N N 10 3DR "C2'" "H2''" sing N N 11 3DR "C5'" "C4'" sing N N 12 3DR "C5'" "H5'" sing N N 13 3DR "C5'" "H5''" sing N N 14 3DR "C4'" "O4'" sing N N 15 3DR "C4'" "C3'" sing N N 16 3DR "C4'" "H4'1" sing N N 17 3DR "O4'" "C1'" sing N N 18 3DR "C1'" "H1'1" sing N N 19 3DR "C1'" "H1'2" sing N N 20 3DR "C3'" "O3'" sing N N 21 3DR "C3'" "H3'" sing N N 22 3DR "O3'" "HO3'" sing N N 23 5CM N1 C2 sing N N 24 5CM N1 C6 sing N N 25 5CM N1 "C1'" sing N N 26 5CM C2 N3 sing N N 27 5CM C2 O2 doub N N 28 5CM N3 C4 doub N N 29 5CM C4 C5 sing N N 30 5CM C4 N4 sing N N 31 5CM C5 C5A sing N N 32 5CM C5 C6 doub N N 33 5CM C5A H5A1 sing N N 34 5CM C5A H5A2 sing N N 35 5CM C5A H5A3 sing N N 36 5CM C6 H6 sing N N 37 5CM N4 HN41 sing N N 38 5CM N4 HN42 sing N N 39 5CM "C1'" "C2'" sing N N 40 5CM "C1'" "O4'" sing N N 41 5CM "C1'" "H1'" sing N N 42 5CM "C2'" "C3'" sing N N 43 5CM "C2'" "H2'" sing N N 44 5CM "C2'" "H2''" sing N N 45 5CM "C3'" "C4'" sing N N 46 5CM "C3'" "O3'" sing N N 47 5CM "C3'" "H3'" sing N N 48 5CM "C4'" "O4'" sing N N 49 5CM "C4'" "C5'" sing N N 50 5CM "C4'" "H4'" sing N N 51 5CM "O3'" "HO3'" sing N N 52 5CM "C5'" "O5'" sing N N 53 5CM "C5'" "H5'" sing N N 54 5CM "C5'" "H5''" sing N N 55 5CM "O5'" P sing N N 56 5CM P OP1 doub N N 57 5CM P OP2 sing N N 58 5CM P OP3 sing N N 59 5CM OP2 HOP2 sing N N 60 5CM OP3 HOP3 sing N N 61 DG OP3 P sing N N 62 DG OP3 HOP3 sing N N 63 DG P OP1 doub N N 64 DG P OP2 sing N N 65 DG P "O5'" sing N N 66 DG OP2 HOP2 sing N N 67 DG "O5'" "C5'" sing N N 68 DG "C5'" "C4'" sing N N 69 DG "C5'" "H5'" sing N N 70 DG "C5'" "H5''" sing N N 71 DG "C4'" "O4'" sing N N 72 DG "C4'" "C3'" sing N N 73 DG "C4'" "H4'" sing N N 74 DG "O4'" "C1'" sing N N 75 DG "C3'" "O3'" sing N N 76 DG "C3'" "C2'" sing N N 77 DG "C3'" "H3'" sing N N 78 DG "O3'" "HO3'" sing N N 79 DG "C2'" "C1'" sing N N 80 DG "C2'" "H2'" sing N N 81 DG "C2'" "H2''" sing N N 82 DG "C1'" N9 sing N N 83 DG "C1'" "H1'" sing N N 84 DG N9 C8 sing Y N 85 DG N9 C4 sing Y N 86 DG C8 N7 doub Y N 87 DG C8 H8 sing N N 88 DG N7 C5 sing Y N 89 DG C5 C6 sing N N 90 DG C5 C4 doub Y N 91 DG C6 O6 doub N N 92 DG C6 N1 sing N N 93 DG N1 C2 sing N N 94 DG N1 H1 sing N N 95 DG C2 N2 sing N N 96 DG C2 N3 doub N N 97 DG N2 H21 sing N N 98 DG N2 H22 sing N N 99 DG N3 C4 sing N N 100 DT OP3 P sing N N 101 DT OP3 HOP3 sing N N 102 DT P OP1 doub N N 103 DT P OP2 sing N N 104 DT P "O5'" sing N N 105 DT OP2 HOP2 sing N N 106 DT "O5'" "C5'" sing N N 107 DT "C5'" "C4'" sing N N 108 DT "C5'" "H5'" sing N N 109 DT "C5'" "H5''" sing N N 110 DT "C4'" "O4'" sing N N 111 DT "C4'" "C3'" sing N N 112 DT "C4'" "H4'" sing N N 113 DT "O4'" "C1'" sing N N 114 DT "C3'" "O3'" sing N N 115 DT "C3'" "C2'" sing N N 116 DT "C3'" "H3'" sing N N 117 DT "O3'" "HO3'" sing N N 118 DT "C2'" "C1'" sing N N 119 DT "C2'" "H2'" sing N N 120 DT "C2'" "H2''" sing N N 121 DT "C1'" N1 sing N N 122 DT "C1'" "H1'" sing N N 123 DT N1 C2 sing N N 124 DT N1 C6 sing N N 125 DT C2 O2 doub N N 126 DT C2 N3 sing N N 127 DT N3 C4 sing N N 128 DT N3 H3 sing N N 129 DT C4 O4 doub N N 130 DT C4 C5 sing N N 131 DT C5 C7 sing N N 132 DT C5 C6 doub N N 133 DT C7 H71 sing N N 134 DT C7 H72 sing N N 135 DT C7 H73 sing N N 136 DT C6 H6 sing N N 137 MCY N1 C2 sing N N 138 MCY N1 C6 sing N N 139 MCY N1 "C1'" sing N N 140 MCY C2 N3 sing N N 141 MCY C2 O2 doub N N 142 MCY N3 C4 doub N N 143 MCY C4 C5 sing N N 144 MCY C4 N4 sing N N 145 MCY C5 C6 doub N N 146 MCY C5 C5A sing N N 147 MCY C6 H6 sing N N 148 MCY N4 HN41 sing N N 149 MCY N4 HN42 sing N N 150 MCY "C1'" "C2'" sing N N 151 MCY "C1'" "O4'" sing N N 152 MCY "C1'" "H1'" sing N N 153 MCY "C2'" "C3'" sing N N 154 MCY "C2'" "H2'" sing N N 155 MCY "C2'" "H2''" sing N N 156 MCY "C3'" "C4'" sing N N 157 MCY "C3'" "O3'" sing N N 158 MCY "C3'" "H3'" sing N N 159 MCY "C4'" "O4'" sing N N 160 MCY "C4'" "C5'" sing N N 161 MCY "C4'" "H4'" sing N N 162 MCY "O3'" "HO3'" sing N N 163 MCY "C5'" "O5'" sing N N 164 MCY "C5'" "H5'" sing N N 165 MCY "C5'" "H5''" sing N N 166 MCY "O5'" "HO5'" sing N N 167 MCY C5A H5A1 sing N N 168 MCY C5A H5A2 sing N N 169 MCY C5A H5A3 sing N N 170 # _ndb_struct_conf_na.entry_id 7D0X _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A MCY 1 1_555 A DG 4 1_555 0.484 -0.172 -0.340 13.191 -2.918 1.813 1 A_MCY1:DG4_A A 1 ? A 4 ? 19 1 1 A DG 9 1_555 A 5CM 6 1_555 -0.547 -0.221 0.176 -9.586 2.739 0.888 2 A_DG9:5CM6_A A 9 ? A 6 ? 19 1 1 A DT 2 1_555 A DT 7 1_555 -1.757 1.426 0.513 32.849 -29.421 -164.476 3 A_DT2:DT7_A A 2 ? A 7 ? 12 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A MCY 1 1_555 A DG 4 1_555 A DG 9 1_555 A 5CM 6 1_555 0.046 0.146 -2.671 -4.950 -9.741 -9.237 -7.691 3.793 -1.613 44.491 -22.609 -14.299 1 AA_MCY1DG9:5CM6DG4_AA A 1 ? A 4 ? A 9 ? A 6 ? 1 A DG 9 1_555 A 5CM 6 1_555 A DT 2 1_555 A DT 7 1_555 -2.345 5.200 -3.859 73.613 35.348 136.729 2.925 0.768 -3.701 18.574 -38.681 147.602 2 AA_DG9DT2:DT75CM6_AA A 9 ? A 6 ? A 2 ? A 7 ? # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 3DR ? ? 3DR ? ? 'SUBJECT OF INVESTIGATION' ? 2 5CM ? ? 5CM ? ? 'SUBJECT OF INVESTIGATION' ? 3 MCY ? ? MCY ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_nmr_spectrometer.spectrometer_id 2 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 7D0X _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N NA O P # loop_