data_7D4G # _entry.id 7D4G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.354 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7D4G pdb_00007d4g 10.2210/pdb7d4g/pdb WWPDB D_1300018725 ? ? EMDB EMD-30573 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'A proof of concept for neutralizing antibody-guided vaccine design against SARS-CoV-2' _pdbx_database_related.db_id EMD-30573 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7D4G _pdbx_database_status.recvd_initial_deposition_date 2020-09-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Cao, L.' 1 ? 'Wang, X.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CN _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Natl Sci Rev' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2053-714X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first nwab053 _citation.page_last nwab053 _citation.title 'A proof of concept for neutralizing antibody-guided vaccine design against SARS-CoV-2.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nsr/nwab053 _citation.pdbx_database_id_PubMed 34676098 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, L.' 1 ? primary 'Cao, L.' 2 ? primary 'Gao, X.S.' 3 ? primary 'Zheng, B.Y.' 4 ? primary 'Deng, Y.Q.' 5 ? primary 'Li, J.X.' 6 ? primary 'Feng, R.' 7 ? primary 'Bian, Q.' 8 ? primary 'Guo, X.L.' 9 ? primary 'Wang, N.' 10 ? primary 'Qiu, H.Y.' 11 ? primary 'Wang, L.' 12 ? primary 'Cui, Z.' 13 ? primary 'Ye, Q.' 14 ? primary 'Chen, G.' 15 ? primary 'Lu, K.K.' 16 ? primary 'Chen, Y.' 17 ? primary 'Chen, Y.T.' 18 ? primary 'Pan, H.X.' 19 ? primary 'Yu, J.' 20 ? primary 'Yao, W.' 21 ? primary 'Zhu, B.L.' 22 ? primary 'Chen, J.' 23 ? primary 'Liu, Y.' 24 ? primary 'Qin, C.F.' 25 ? primary 'Wang, X.' 26 ? primary 'Zhu, F.C.' 27 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike glycoprotein S1' 31663.637 1 ? ? ? ? 2 polymer man 'Light chain of FC05 Fab' 11345.480 1 ? ? ? ? 3 polymer man 'Heavy chain of FC05 Fab' 13463.899 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYF ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVS QPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPG DSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVD ; ;SQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYF ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVS QPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPG DSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVD ; B ? 2 'polypeptide(L)' no no ;QSVLTQAPSVSGAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQ TGDEADYYCGTWDSSLSAVVFGGGTKLTVL ; ;QSVLTQAPSVSGAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQ TGDEADYYCGTWDSSLSAVVFGGGTKLTVL ; G ? 3 'polypeptide(L)' no no ;EVQLLEQSGAEVKKPGASVRVSCKVSGYTLPEVAMHWVRQAPGKGLEWMGGFDPEDGETMYAQKFQGRVTMTEDTSTDTA YMELSSLRSEDTAVYYCATTTPFSSSYWFDPWGQGTLVTVSS ; ;EVQLLEQSGAEVKKPGASVRVSCKVSGYTLPEVAMHWVRQAPGKGLEWMGGFDPEDGETMYAQKFQGRVTMTEDTSTDTA YMELSSLRSEDTAVYYCATTTPFSSSYWFDPWGQGTLVTVSS ; N ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLN n 1 3 CYS n 1 4 VAL n 1 5 ASN n 1 6 LEU n 1 7 THR n 1 8 THR n 1 9 ARG n 1 10 THR n 1 11 GLN n 1 12 LEU n 1 13 PRO n 1 14 PRO n 1 15 ALA n 1 16 TYR n 1 17 THR n 1 18 ASN n 1 19 SER n 1 20 PHE n 1 21 THR n 1 22 ARG n 1 23 GLY n 1 24 VAL n 1 25 TYR n 1 26 TYR n 1 27 PRO n 1 28 ASP n 1 29 LYS n 1 30 VAL n 1 31 PHE n 1 32 ARG n 1 33 SER n 1 34 SER n 1 35 VAL n 1 36 LEU n 1 37 HIS n 1 38 SER n 1 39 THR n 1 40 GLN n 1 41 ASP n 1 42 LEU n 1 43 PHE n 1 44 LEU n 1 45 PRO n 1 46 PHE n 1 47 PHE n 1 48 SER n 1 49 ASN n 1 50 VAL n 1 51 THR n 1 52 TRP n 1 53 PHE n 1 54 HIS n 1 55 ALA n 1 56 ILE n 1 57 HIS n 1 58 VAL n 1 59 SER n 1 60 GLY n 1 61 THR n 1 62 ASN n 1 63 GLY n 1 64 THR n 1 65 LYS n 1 66 ARG n 1 67 PHE n 1 68 ASP n 1 69 ASN n 1 70 PRO n 1 71 VAL n 1 72 LEU n 1 73 PRO n 1 74 PHE n 1 75 ASN n 1 76 ASP n 1 77 GLY n 1 78 VAL n 1 79 TYR n 1 80 PHE n 1 81 ALA n 1 82 SER n 1 83 THR n 1 84 GLU n 1 85 LYS n 1 86 SER n 1 87 ASN n 1 88 ILE n 1 89 ILE n 1 90 ARG n 1 91 GLY n 1 92 TRP n 1 93 ILE n 1 94 PHE n 1 95 GLY n 1 96 THR n 1 97 THR n 1 98 LEU n 1 99 ASP n 1 100 SER n 1 101 LYS n 1 102 THR n 1 103 GLN n 1 104 SER n 1 105 LEU n 1 106 LEU n 1 107 ILE n 1 108 VAL n 1 109 ASN n 1 110 ASN n 1 111 ALA n 1 112 THR n 1 113 ASN n 1 114 VAL n 1 115 VAL n 1 116 ILE n 1 117 LYS n 1 118 VAL n 1 119 CYS n 1 120 GLU n 1 121 PHE n 1 122 GLN n 1 123 PHE n 1 124 CYS n 1 125 ASN n 1 126 ASP n 1 127 PRO n 1 128 PHE n 1 129 LEU n 1 130 GLY n 1 131 VAL n 1 132 TYR n 1 133 TYR n 1 134 HIS n 1 135 LYS n 1 136 ASN n 1 137 ASN n 1 138 LYS n 1 139 SER n 1 140 TRP n 1 141 MET n 1 142 GLU n 1 143 SER n 1 144 GLU n 1 145 PHE n 1 146 ARG n 1 147 VAL n 1 148 TYR n 1 149 SER n 1 150 SER n 1 151 ALA n 1 152 ASN n 1 153 ASN n 1 154 CYS n 1 155 THR n 1 156 PHE n 1 157 GLU n 1 158 TYR n 1 159 VAL n 1 160 SER n 1 161 GLN n 1 162 PRO n 1 163 PHE n 1 164 LEU n 1 165 MET n 1 166 ASP n 1 167 LEU n 1 168 GLU n 1 169 GLY n 1 170 LYS n 1 171 GLN n 1 172 GLY n 1 173 ASN n 1 174 PHE n 1 175 LYS n 1 176 ASN n 1 177 LEU n 1 178 ARG n 1 179 GLU n 1 180 PHE n 1 181 VAL n 1 182 PHE n 1 183 LYS n 1 184 ASN n 1 185 ILE n 1 186 ASP n 1 187 GLY n 1 188 TYR n 1 189 PHE n 1 190 LYS n 1 191 ILE n 1 192 TYR n 1 193 SER n 1 194 LYS n 1 195 HIS n 1 196 THR n 1 197 PRO n 1 198 ILE n 1 199 ASN n 1 200 LEU n 1 201 VAL n 1 202 ARG n 1 203 ASP n 1 204 LEU n 1 205 PRO n 1 206 GLN n 1 207 GLY n 1 208 PHE n 1 209 SER n 1 210 ALA n 1 211 LEU n 1 212 GLU n 1 213 PRO n 1 214 LEU n 1 215 VAL n 1 216 ASP n 1 217 LEU n 1 218 PRO n 1 219 ILE n 1 220 GLY n 1 221 ILE n 1 222 ASN n 1 223 ILE n 1 224 THR n 1 225 ARG n 1 226 PHE n 1 227 GLN n 1 228 THR n 1 229 LEU n 1 230 LEU n 1 231 ALA n 1 232 LEU n 1 233 HIS n 1 234 ARG n 1 235 SER n 1 236 TYR n 1 237 LEU n 1 238 THR n 1 239 PRO n 1 240 GLY n 1 241 ASP n 1 242 SER n 1 243 SER n 1 244 SER n 1 245 GLY n 1 246 TRP n 1 247 THR n 1 248 ALA n 1 249 GLY n 1 250 ALA n 1 251 ALA n 1 252 ALA n 1 253 TYR n 1 254 TYR n 1 255 VAL n 1 256 GLY n 1 257 TYR n 1 258 LEU n 1 259 GLN n 1 260 PRO n 1 261 ARG n 1 262 THR n 1 263 PHE n 1 264 LEU n 1 265 LEU n 1 266 LYS n 1 267 TYR n 1 268 ASN n 1 269 GLU n 1 270 ASN n 1 271 GLY n 1 272 THR n 1 273 ILE n 1 274 THR n 1 275 ASP n 1 276 ALA n 1 277 VAL n 1 278 ASP n 2 1 GLN n 2 2 SER n 2 3 VAL n 2 4 LEU n 2 5 THR n 2 6 GLN n 2 7 ALA n 2 8 PRO n 2 9 SER n 2 10 VAL n 2 11 SER n 2 12 GLY n 2 13 ALA n 2 14 PRO n 2 15 GLY n 2 16 GLN n 2 17 LYS n 2 18 VAL n 2 19 THR n 2 20 ILE n 2 21 SER n 2 22 CYS n 2 23 SER n 2 24 GLY n 2 25 SER n 2 26 SER n 2 27 SER n 2 28 ASN n 2 29 ILE n 2 30 GLY n 2 31 ASN n 2 32 ASN n 2 33 TYR n 2 34 VAL n 2 35 SER n 2 36 TRP n 2 37 TYR n 2 38 GLN n 2 39 GLN n 2 40 LEU n 2 41 PRO n 2 42 GLY n 2 43 THR n 2 44 ALA n 2 45 PRO n 2 46 LYS n 2 47 LEU n 2 48 LEU n 2 49 ILE n 2 50 TYR n 2 51 ASP n 2 52 ASN n 2 53 ASN n 2 54 LYS n 2 55 ARG n 2 56 PRO n 2 57 SER n 2 58 GLY n 2 59 ILE n 2 60 PRO n 2 61 ASP n 2 62 ARG n 2 63 PHE n 2 64 SER n 2 65 GLY n 2 66 SER n 2 67 LYS n 2 68 SER n 2 69 GLY n 2 70 THR n 2 71 SER n 2 72 ALA n 2 73 THR n 2 74 LEU n 2 75 GLY n 2 76 ILE n 2 77 THR n 2 78 GLY n 2 79 LEU n 2 80 GLN n 2 81 THR n 2 82 GLY n 2 83 ASP n 2 84 GLU n 2 85 ALA n 2 86 ASP n 2 87 TYR n 2 88 TYR n 2 89 CYS n 2 90 GLY n 2 91 THR n 2 92 TRP n 2 93 ASP n 2 94 SER n 2 95 SER n 2 96 LEU n 2 97 SER n 2 98 ALA n 2 99 VAL n 2 100 VAL n 2 101 PHE n 2 102 GLY n 2 103 GLY n 2 104 GLY n 2 105 THR n 2 106 LYS n 2 107 LEU n 2 108 THR n 2 109 VAL n 2 110 LEU n 3 1 GLU n 3 2 VAL n 3 3 GLN n 3 4 LEU n 3 5 LEU n 3 6 GLU n 3 7 GLN n 3 8 SER n 3 9 GLY n 3 10 ALA n 3 11 GLU n 3 12 VAL n 3 13 LYS n 3 14 LYS n 3 15 PRO n 3 16 GLY n 3 17 ALA n 3 18 SER n 3 19 VAL n 3 20 ARG n 3 21 VAL n 3 22 SER n 3 23 CYS n 3 24 LYS n 3 25 VAL n 3 26 SER n 3 27 GLY n 3 28 TYR n 3 29 THR n 3 30 LEU n 3 31 PRO n 3 32 GLU n 3 33 VAL n 3 34 ALA n 3 35 MET n 3 36 HIS n 3 37 TRP n 3 38 VAL n 3 39 ARG n 3 40 GLN n 3 41 ALA n 3 42 PRO n 3 43 GLY n 3 44 LYS n 3 45 GLY n 3 46 LEU n 3 47 GLU n 3 48 TRP n 3 49 MET n 3 50 GLY n 3 51 GLY n 3 52 PHE n 3 53 ASP n 3 54 PRO n 3 55 GLU n 3 56 ASP n 3 57 GLY n 3 58 GLU n 3 59 THR n 3 60 MET n 3 61 TYR n 3 62 ALA n 3 63 GLN n 3 64 LYS n 3 65 PHE n 3 66 GLN n 3 67 GLY n 3 68 ARG n 3 69 VAL n 3 70 THR n 3 71 MET n 3 72 THR n 3 73 GLU n 3 74 ASP n 3 75 THR n 3 76 SER n 3 77 THR n 3 78 ASP n 3 79 THR n 3 80 ALA n 3 81 TYR n 3 82 MET n 3 83 GLU n 3 84 LEU n 3 85 SER n 3 86 SER n 3 87 LEU n 3 88 ARG n 3 89 SER n 3 90 GLU n 3 91 ASP n 3 92 THR n 3 93 ALA n 3 94 VAL n 3 95 TYR n 3 96 TYR n 3 97 CYS n 3 98 ALA n 3 99 THR n 3 100 THR n 3 101 THR n 3 102 PRO n 3 103 PHE n 3 104 SER n 3 105 SER n 3 106 SER n 3 107 TYR n 3 108 TRP n 3 109 PHE n 3 110 ASP n 3 111 PRO n 3 112 TRP n 3 113 GLY n 3 114 GLN n 3 115 GLY n 3 116 THR n 3 117 LEU n 3 118 VAL n 3 119 THR n 3 120 VAL n 3 121 SER n 3 122 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 278 2019-nCoV ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 110 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293T ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 122 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293T ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;SQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYF ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVS QPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPG DSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVD ; 13 2 PDB 7D4G 7D4G ? 2 ? 1 3 PDB 7D4G 7D4G ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7D4G B 1 ? 278 ? P0DTC2 13 ? 290 ? 13 290 2 2 7D4G G 1 ? 110 ? 7D4G 1 ? 110 ? 1 110 3 3 7D4G N 1 ? 122 ? 7D4G 1 ? 122 ? 1 122 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7D4G _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7D4G _struct.title 'A proof of concept for neutralizing antibody-guided vaccine design against SARS-CoV-2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7D4G _struct_keywords.text 'SARS-CoV-2, Spike, antibody, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 144 ? ARG A 146 ? GLU B 156 ARG B 158 5 ? 3 HELX_P HELX_P2 AA2 GLN B 80 ? GLU B 84 ? GLN G 80 GLU G 84 5 ? 5 HELX_P HELX_P3 AA3 THR C 29 ? VAL C 33 ? THR N 29 VAL N 33 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 124 SG ? ? B CYS 15 B CYS 136 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 119 SG ? ? ? 1_555 A CYS 154 SG ? ? B CYS 131 B CYS 166 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 89 SG ? ? G CYS 22 G CYS 89 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf4 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 97 SG ? ? N CYS 23 N CYS 97 1_555 ? ? ? ? ? ? ? 2.035 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 3 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 3 ? AA6 ? 5 ? AA7 ? 4 ? AA8 ? 3 ? AA9 ? 2 ? AB1 ? 3 ? AB2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA7 1 2 ? parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA9 1 2 ? anti-parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB2 1 2 ? anti-parallel AB2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 16 ? SER A 19 ? TYR B 28 SER B 31 AA1 2 SER A 48 ? HIS A 54 ? SER B 60 HIS B 66 AA1 3 ALA A 252 ? TYR A 257 ? ALA B 264 TYR B 269 AA1 4 VAL A 78 ? SER A 82 ? VAL B 90 SER B 94 AA1 5 LEU A 177 ? ILE A 185 ? LEU B 189 ILE B 197 AA1 6 TYR A 188 ? THR A 196 ? TYR B 200 THR B 208 AA1 7 GLU A 212 ? PRO A 218 ? GLU B 224 PRO B 230 AA2 1 LEU A 36 ? PHE A 43 ? LEU B 48 PHE B 55 AA2 2 GLN A 259 ? LYS A 266 ? GLN B 271 LYS B 278 AA2 3 ASP A 275 ? VAL A 277 ? ASP B 287 VAL B 289 AA3 1 LEU A 72 ? PRO A 73 ? LEU B 84 PRO B 85 AA3 2 ARG A 225 ? PHE A 226 ? ARG B 237 PHE B 238 AA4 1 ILE A 89 ? TRP A 92 ? ILE B 101 TRP B 104 AA4 2 THR A 228 ? LEU A 232 ? THR B 240 LEU B 244 AA4 3 LEU A 129 ? TYR A 133 ? LEU B 141 TYR B 145 AA4 4 TRP A 140 ? SER A 143 ? TRP B 152 SER B 155 AA5 1 SER A 104 ? VAL A 108 ? SER B 116 VAL B 120 AA5 2 VAL A 114 ? PHE A 123 ? VAL B 126 PHE B 135 AA5 3 TYR A 148 ? SER A 160 ? TYR B 160 SER B 172 AA6 1 SER B 9 ? GLY B 12 ? SER G 9 GLY G 12 AA6 2 THR B 105 ? VAL B 109 ? THR G 105 VAL G 109 AA6 3 ASP B 86 ? ASP B 93 ? ASP G 86 ASP G 93 AA6 4 VAL B 34 ? GLN B 39 ? VAL G 34 GLN G 39 AA6 5 LYS B 46 ? TYR B 50 ? LYS G 46 TYR G 50 AA7 1 SER B 9 ? GLY B 12 ? SER G 9 GLY G 12 AA7 2 THR B 105 ? VAL B 109 ? THR G 105 VAL G 109 AA7 3 ASP B 86 ? ASP B 93 ? ASP G 86 ASP G 93 AA7 4 ALA B 98 ? PHE B 101 ? ALA G 98 PHE G 101 AA8 1 ILE B 20 ? SER B 23 ? ILE G 20 SER G 23 AA8 2 SER B 71 ? GLY B 75 ? SER G 71 GLY G 75 AA8 3 SER B 64 ? SER B 68 ? SER G 64 SER G 68 AA9 1 GLN C 3 ? LEU C 4 ? GLN N 3 LEU N 4 AA9 2 VAL C 25 ? SER C 26 ? VAL N 25 SER N 26 AB1 1 SER C 22 ? CYS C 23 ? SER N 22 CYS N 23 AB1 2 THR C 79 ? LEU C 84 ? THR N 79 LEU N 84 AB1 3 VAL C 69 ? ASP C 74 ? VAL N 69 ASP N 74 AB2 1 LEU C 46 ? MET C 49 ? LEU N 46 MET N 49 AB2 2 ALA C 34 ? GLN C 40 ? ALA N 34 GLN N 40 AB2 3 VAL C 94 ? THR C 100 ? VAL N 94 THR N 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 17 ? N THR B 29 O VAL A 50 ? O VAL B 62 AA1 2 3 N PHE A 53 ? N PHE B 65 O TYR A 253 ? O TYR B 265 AA1 3 4 O TYR A 254 ? O TYR B 266 N ALA A 81 ? N ALA B 93 AA1 4 5 N SER A 82 ? N SER B 94 O ARG A 178 ? O ARG B 190 AA1 5 6 N ILE A 185 ? N ILE B 197 O TYR A 188 ? O TYR B 200 AA1 6 7 N ILE A 191 ? N ILE B 203 O LEU A 214 ? O LEU B 226 AA2 1 2 N HIS A 37 ? N HIS B 49 O LEU A 265 ? O LEU B 277 AA2 2 3 N LYS A 266 ? N LYS B 278 O ASP A 275 ? O ASP B 287 AA3 1 2 N LEU A 72 ? N LEU B 84 O PHE A 226 ? O PHE B 238 AA4 1 2 N GLY A 91 ? N GLY B 103 O LEU A 229 ? O LEU B 241 AA4 2 3 O LEU A 230 ? O LEU B 242 N LEU A 129 ? N LEU B 141 AA4 3 4 N GLY A 130 ? N GLY B 142 O SER A 143 ? O SER B 155 AA5 1 2 N LEU A 106 ? N LEU B 118 O LYS A 117 ? O LYS B 129 AA5 2 3 N VAL A 118 ? N VAL B 130 O PHE A 156 ? O PHE B 168 AA6 1 2 N GLY B 12 ? N GLY G 12 O THR B 108 ? O THR G 108 AA6 2 3 O THR B 105 ? O THR G 105 N TYR B 87 ? N TYR G 87 AA6 3 4 O GLY B 90 ? O GLY G 90 N SER B 35 ? N SER G 35 AA6 4 5 N GLN B 38 ? N GLN G 38 O LYS B 46 ? O LYS G 46 AA7 1 2 N GLY B 12 ? N GLY G 12 O THR B 108 ? O THR G 108 AA7 2 3 O THR B 105 ? O THR G 105 N TYR B 87 ? N TYR G 87 AA7 3 4 N ASP B 93 ? N ASP G 93 O ALA B 98 ? O ALA G 98 AA8 1 2 N ILE B 20 ? N ILE G 20 O LEU B 74 ? O LEU G 74 AA8 2 3 O SER B 71 ? O SER G 71 N SER B 68 ? N SER G 68 AA9 1 2 N GLN C 3 ? N GLN N 3 O SER C 26 ? O SER N 26 AB1 1 2 N CYS C 23 ? N CYS N 23 O ALA C 80 ? O ALA N 80 AB1 2 3 O GLU C 83 ? O GLU N 83 N THR C 70 ? N THR N 70 AB2 1 2 O GLU C 47 ? O GLU N 47 N ARG C 39 ? N ARG N 39 AB2 2 3 N GLN C 40 ? N GLN N 40 O VAL C 94 ? O VAL N 94 # _atom_sites.entry_id 7D4G _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 13 ? ? ? B . n A 1 2 GLN 2 14 14 GLN GLN B . n A 1 3 CYS 3 15 15 CYS CYS B . n A 1 4 VAL 4 16 16 VAL VAL B . n A 1 5 ASN 5 17 17 ASN ASN B . n A 1 6 LEU 6 18 18 LEU LEU B . n A 1 7 THR 7 19 19 THR THR B . n A 1 8 THR 8 20 20 THR THR B . n A 1 9 ARG 9 21 21 ARG ARG B . n A 1 10 THR 10 22 22 THR THR B . n A 1 11 GLN 11 23 23 GLN GLN B . n A 1 12 LEU 12 24 24 LEU LEU B . n A 1 13 PRO 13 25 25 PRO PRO B . n A 1 14 PRO 14 26 26 PRO PRO B . n A 1 15 ALA 15 27 27 ALA ALA B . n A 1 16 TYR 16 28 28 TYR TYR B . n A 1 17 THR 17 29 29 THR THR B . n A 1 18 ASN 18 30 30 ASN ASN B . n A 1 19 SER 19 31 31 SER SER B . n A 1 20 PHE 20 32 32 PHE PHE B . n A 1 21 THR 21 33 33 THR THR B . n A 1 22 ARG 22 34 34 ARG ARG B . n A 1 23 GLY 23 35 35 GLY GLY B . n A 1 24 VAL 24 36 36 VAL VAL B . n A 1 25 TYR 25 37 37 TYR TYR B . n A 1 26 TYR 26 38 38 TYR TYR B . n A 1 27 PRO 27 39 39 PRO PRO B . n A 1 28 ASP 28 40 40 ASP ASP B . n A 1 29 LYS 29 41 41 LYS LYS B . n A 1 30 VAL 30 42 42 VAL VAL B . n A 1 31 PHE 31 43 43 PHE PHE B . n A 1 32 ARG 32 44 44 ARG ARG B . n A 1 33 SER 33 45 45 SER SER B . n A 1 34 SER 34 46 46 SER SER B . n A 1 35 VAL 35 47 47 VAL VAL B . n A 1 36 LEU 36 48 48 LEU LEU B . n A 1 37 HIS 37 49 49 HIS HIS B . n A 1 38 SER 38 50 50 SER SER B . n A 1 39 THR 39 51 51 THR THR B . n A 1 40 GLN 40 52 52 GLN GLN B . n A 1 41 ASP 41 53 53 ASP ASP B . n A 1 42 LEU 42 54 54 LEU LEU B . n A 1 43 PHE 43 55 55 PHE PHE B . n A 1 44 LEU 44 56 56 LEU LEU B . n A 1 45 PRO 45 57 57 PRO PRO B . n A 1 46 PHE 46 58 58 PHE PHE B . n A 1 47 PHE 47 59 59 PHE PHE B . n A 1 48 SER 48 60 60 SER SER B . n A 1 49 ASN 49 61 61 ASN ASN B . n A 1 50 VAL 50 62 62 VAL VAL B . n A 1 51 THR 51 63 63 THR THR B . n A 1 52 TRP 52 64 64 TRP TRP B . n A 1 53 PHE 53 65 65 PHE PHE B . n A 1 54 HIS 54 66 66 HIS HIS B . n A 1 55 ALA 55 67 67 ALA ALA B . n A 1 56 ILE 56 68 68 ILE ILE B . n A 1 57 HIS 57 69 69 HIS HIS B . n A 1 58 VAL 58 70 70 VAL VAL B . n A 1 59 SER 59 71 71 SER SER B . n A 1 60 GLY 60 72 72 GLY GLY B . n A 1 61 THR 61 73 73 THR THR B . n A 1 62 ASN 62 74 74 ASN ASN B . n A 1 63 GLY 63 75 75 GLY GLY B . n A 1 64 THR 64 76 76 THR THR B . n A 1 65 LYS 65 77 77 LYS LYS B . n A 1 66 ARG 66 78 78 ARG ARG B . n A 1 67 PHE 67 79 79 PHE PHE B . n A 1 68 ASP 68 80 80 ASP ASP B . n A 1 69 ASN 69 81 81 ASN ASN B . n A 1 70 PRO 70 82 82 PRO PRO B . n A 1 71 VAL 71 83 83 VAL VAL B . n A 1 72 LEU 72 84 84 LEU LEU B . n A 1 73 PRO 73 85 85 PRO PRO B . n A 1 74 PHE 74 86 86 PHE PHE B . n A 1 75 ASN 75 87 87 ASN ASN B . n A 1 76 ASP 76 88 88 ASP ASP B . n A 1 77 GLY 77 89 89 GLY GLY B . n A 1 78 VAL 78 90 90 VAL VAL B . n A 1 79 TYR 79 91 91 TYR TYR B . n A 1 80 PHE 80 92 92 PHE PHE B . n A 1 81 ALA 81 93 93 ALA ALA B . n A 1 82 SER 82 94 94 SER SER B . n A 1 83 THR 83 95 95 THR THR B . n A 1 84 GLU 84 96 96 GLU GLU B . n A 1 85 LYS 85 97 97 LYS LYS B . n A 1 86 SER 86 98 98 SER SER B . n A 1 87 ASN 87 99 99 ASN ASN B . n A 1 88 ILE 88 100 100 ILE ILE B . n A 1 89 ILE 89 101 101 ILE ILE B . n A 1 90 ARG 90 102 102 ARG ARG B . n A 1 91 GLY 91 103 103 GLY GLY B . n A 1 92 TRP 92 104 104 TRP TRP B . n A 1 93 ILE 93 105 105 ILE ILE B . n A 1 94 PHE 94 106 106 PHE PHE B . n A 1 95 GLY 95 107 107 GLY GLY B . n A 1 96 THR 96 108 108 THR THR B . n A 1 97 THR 97 109 109 THR THR B . n A 1 98 LEU 98 110 110 LEU LEU B . n A 1 99 ASP 99 111 111 ASP ASP B . n A 1 100 SER 100 112 112 SER SER B . n A 1 101 LYS 101 113 113 LYS LYS B . n A 1 102 THR 102 114 114 THR THR B . n A 1 103 GLN 103 115 115 GLN GLN B . n A 1 104 SER 104 116 116 SER SER B . n A 1 105 LEU 105 117 117 LEU LEU B . n A 1 106 LEU 106 118 118 LEU LEU B . n A 1 107 ILE 107 119 119 ILE ILE B . n A 1 108 VAL 108 120 120 VAL VAL B . n A 1 109 ASN 109 121 121 ASN ASN B . n A 1 110 ASN 110 122 122 ASN ASN B . n A 1 111 ALA 111 123 123 ALA ALA B . n A 1 112 THR 112 124 124 THR THR B . n A 1 113 ASN 113 125 125 ASN ASN B . n A 1 114 VAL 114 126 126 VAL VAL B . n A 1 115 VAL 115 127 127 VAL VAL B . n A 1 116 ILE 116 128 128 ILE ILE B . n A 1 117 LYS 117 129 129 LYS LYS B . n A 1 118 VAL 118 130 130 VAL VAL B . n A 1 119 CYS 119 131 131 CYS CYS B . n A 1 120 GLU 120 132 132 GLU GLU B . n A 1 121 PHE 121 133 133 PHE PHE B . n A 1 122 GLN 122 134 134 GLN GLN B . n A 1 123 PHE 123 135 135 PHE PHE B . n A 1 124 CYS 124 136 136 CYS CYS B . n A 1 125 ASN 125 137 137 ASN ASN B . n A 1 126 ASP 126 138 138 ASP ASP B . n A 1 127 PRO 127 139 139 PRO PRO B . n A 1 128 PHE 128 140 140 PHE PHE B . n A 1 129 LEU 129 141 141 LEU LEU B . n A 1 130 GLY 130 142 142 GLY GLY B . n A 1 131 VAL 131 143 143 VAL VAL B . n A 1 132 TYR 132 144 144 TYR TYR B . n A 1 133 TYR 133 145 145 TYR TYR B . n A 1 134 HIS 134 146 146 HIS HIS B . n A 1 135 LYS 135 147 147 LYS LYS B . n A 1 136 ASN 136 148 148 ASN ASN B . n A 1 137 ASN 137 149 149 ASN ASN B . n A 1 138 LYS 138 150 150 LYS LYS B . n A 1 139 SER 139 151 151 SER SER B . n A 1 140 TRP 140 152 152 TRP TRP B . n A 1 141 MET 141 153 153 MET MET B . n A 1 142 GLU 142 154 154 GLU GLU B . n A 1 143 SER 143 155 155 SER SER B . n A 1 144 GLU 144 156 156 GLU GLU B . n A 1 145 PHE 145 157 157 PHE PHE B . n A 1 146 ARG 146 158 158 ARG ARG B . n A 1 147 VAL 147 159 159 VAL VAL B . n A 1 148 TYR 148 160 160 TYR TYR B . n A 1 149 SER 149 161 161 SER SER B . n A 1 150 SER 150 162 162 SER SER B . n A 1 151 ALA 151 163 163 ALA ALA B . n A 1 152 ASN 152 164 164 ASN ASN B . n A 1 153 ASN 153 165 165 ASN ASN B . n A 1 154 CYS 154 166 166 CYS CYS B . n A 1 155 THR 155 167 167 THR THR B . n A 1 156 PHE 156 168 168 PHE PHE B . n A 1 157 GLU 157 169 169 GLU GLU B . n A 1 158 TYR 158 170 170 TYR TYR B . n A 1 159 VAL 159 171 171 VAL VAL B . n A 1 160 SER 160 172 172 SER SER B . n A 1 161 GLN 161 173 173 GLN GLN B . n A 1 162 PRO 162 174 174 PRO PRO B . n A 1 163 PHE 163 175 175 PHE PHE B . n A 1 164 LEU 164 176 176 LEU LEU B . n A 1 165 MET 165 177 177 MET MET B . n A 1 166 ASP 166 178 178 ASP ASP B . n A 1 167 LEU 167 179 179 LEU LEU B . n A 1 168 GLU 168 180 180 GLU GLU B . n A 1 169 GLY 169 181 181 GLY GLY B . n A 1 170 LYS 170 182 182 LYS LYS B . n A 1 171 GLN 171 183 183 GLN GLN B . n A 1 172 GLY 172 184 184 GLY GLY B . n A 1 173 ASN 173 185 185 ASN ASN B . n A 1 174 PHE 174 186 186 PHE PHE B . n A 1 175 LYS 175 187 187 LYS LYS B . n A 1 176 ASN 176 188 188 ASN ASN B . n A 1 177 LEU 177 189 189 LEU LEU B . n A 1 178 ARG 178 190 190 ARG ARG B . n A 1 179 GLU 179 191 191 GLU GLU B . n A 1 180 PHE 180 192 192 PHE PHE B . n A 1 181 VAL 181 193 193 VAL VAL B . n A 1 182 PHE 182 194 194 PHE PHE B . n A 1 183 LYS 183 195 195 LYS LYS B . n A 1 184 ASN 184 196 196 ASN ASN B . n A 1 185 ILE 185 197 197 ILE ILE B . n A 1 186 ASP 186 198 198 ASP ASP B . n A 1 187 GLY 187 199 199 GLY GLY B . n A 1 188 TYR 188 200 200 TYR TYR B . n A 1 189 PHE 189 201 201 PHE PHE B . n A 1 190 LYS 190 202 202 LYS LYS B . n A 1 191 ILE 191 203 203 ILE ILE B . n A 1 192 TYR 192 204 204 TYR TYR B . n A 1 193 SER 193 205 205 SER SER B . n A 1 194 LYS 194 206 206 LYS LYS B . n A 1 195 HIS 195 207 207 HIS HIS B . n A 1 196 THR 196 208 208 THR THR B . n A 1 197 PRO 197 209 209 PRO PRO B . n A 1 198 ILE 198 210 210 ILE ILE B . n A 1 199 ASN 199 211 211 ASN ASN B . n A 1 200 LEU 200 212 212 LEU LEU B . n A 1 201 VAL 201 213 213 VAL VAL B . n A 1 202 ARG 202 214 214 ARG ARG B . n A 1 203 ASP 203 215 215 ASP ASP B . n A 1 204 LEU 204 216 216 LEU LEU B . n A 1 205 PRO 205 217 217 PRO PRO B . n A 1 206 GLN 206 218 218 GLN GLN B . n A 1 207 GLY 207 219 219 GLY GLY B . n A 1 208 PHE 208 220 220 PHE PHE B . n A 1 209 SER 209 221 221 SER SER B . n A 1 210 ALA 210 222 222 ALA ALA B . n A 1 211 LEU 211 223 223 LEU LEU B . n A 1 212 GLU 212 224 224 GLU GLU B . n A 1 213 PRO 213 225 225 PRO PRO B . n A 1 214 LEU 214 226 226 LEU LEU B . n A 1 215 VAL 215 227 227 VAL VAL B . n A 1 216 ASP 216 228 228 ASP ASP B . n A 1 217 LEU 217 229 229 LEU LEU B . n A 1 218 PRO 218 230 230 PRO PRO B . n A 1 219 ILE 219 231 231 ILE ILE B . n A 1 220 GLY 220 232 232 GLY GLY B . n A 1 221 ILE 221 233 233 ILE ILE B . n A 1 222 ASN 222 234 234 ASN ASN B . n A 1 223 ILE 223 235 235 ILE ILE B . n A 1 224 THR 224 236 236 THR THR B . n A 1 225 ARG 225 237 237 ARG ARG B . n A 1 226 PHE 226 238 238 PHE PHE B . n A 1 227 GLN 227 239 239 GLN GLN B . n A 1 228 THR 228 240 240 THR THR B . n A 1 229 LEU 229 241 241 LEU LEU B . n A 1 230 LEU 230 242 242 LEU LEU B . n A 1 231 ALA 231 243 243 ALA ALA B . n A 1 232 LEU 232 244 244 LEU LEU B . n A 1 233 HIS 233 245 245 HIS HIS B . n A 1 234 ARG 234 246 246 ARG ARG B . n A 1 235 SER 235 247 247 SER SER B . n A 1 236 TYR 236 248 248 TYR TYR B . n A 1 237 LEU 237 249 249 LEU LEU B . n A 1 238 THR 238 250 250 THR THR B . n A 1 239 PRO 239 251 251 PRO PRO B . n A 1 240 GLY 240 252 ? ? ? B . n A 1 241 ASP 241 253 ? ? ? B . n A 1 242 SER 242 254 ? ? ? B . n A 1 243 SER 243 255 ? ? ? B . n A 1 244 SER 244 256 256 SER SER B . n A 1 245 GLY 245 257 257 GLY GLY B . n A 1 246 TRP 246 258 258 TRP TRP B . n A 1 247 THR 247 259 259 THR THR B . n A 1 248 ALA 248 260 260 ALA ALA B . n A 1 249 GLY 249 261 261 GLY GLY B . n A 1 250 ALA 250 262 262 ALA ALA B . n A 1 251 ALA 251 263 263 ALA ALA B . n A 1 252 ALA 252 264 264 ALA ALA B . n A 1 253 TYR 253 265 265 TYR TYR B . n A 1 254 TYR 254 266 266 TYR TYR B . n A 1 255 VAL 255 267 267 VAL VAL B . n A 1 256 GLY 256 268 268 GLY GLY B . n A 1 257 TYR 257 269 269 TYR TYR B . n A 1 258 LEU 258 270 270 LEU LEU B . n A 1 259 GLN 259 271 271 GLN GLN B . n A 1 260 PRO 260 272 272 PRO PRO B . n A 1 261 ARG 261 273 273 ARG ARG B . n A 1 262 THR 262 274 274 THR THR B . n A 1 263 PHE 263 275 275 PHE PHE B . n A 1 264 LEU 264 276 276 LEU LEU B . n A 1 265 LEU 265 277 277 LEU LEU B . n A 1 266 LYS 266 278 278 LYS LYS B . n A 1 267 TYR 267 279 279 TYR TYR B . n A 1 268 ASN 268 280 280 ASN ASN B . n A 1 269 GLU 269 281 281 GLU GLU B . n A 1 270 ASN 270 282 282 ASN ASN B . n A 1 271 GLY 271 283 283 GLY GLY B . n A 1 272 THR 272 284 284 THR THR B . n A 1 273 ILE 273 285 285 ILE ILE B . n A 1 274 THR 274 286 286 THR THR B . n A 1 275 ASP 275 287 287 ASP ASP B . n A 1 276 ALA 276 288 288 ALA ALA B . n A 1 277 VAL 277 289 289 VAL VAL B . n A 1 278 ASP 278 290 290 ASP ASP B . n B 2 1 GLN 1 1 ? ? ? G . n B 2 2 SER 2 2 2 SER SER G . n B 2 3 VAL 3 3 3 VAL VAL G . n B 2 4 LEU 4 4 4 LEU LEU G . n B 2 5 THR 5 5 5 THR THR G . n B 2 6 GLN 6 6 6 GLN GLN G . n B 2 7 ALA 7 7 7 ALA ALA G . n B 2 8 PRO 8 8 8 PRO PRO G . n B 2 9 SER 9 9 9 SER SER G . n B 2 10 VAL 10 10 10 VAL VAL G . n B 2 11 SER 11 11 11 SER SER G . n B 2 12 GLY 12 12 12 GLY ALA G . n B 2 13 ALA 13 13 13 ALA ALA G . n B 2 14 PRO 14 14 14 PRO PRO G . n B 2 15 GLY 15 15 15 GLY GLY G . n B 2 16 GLN 16 16 16 GLN GLN G . n B 2 17 LYS 17 17 17 LYS LYS G . n B 2 18 VAL 18 18 18 VAL VAL G . n B 2 19 THR 19 19 19 THR THR G . n B 2 20 ILE 20 20 20 ILE ILE G . n B 2 21 SER 21 21 21 SER SER G . n B 2 22 CYS 22 22 22 CYS CYS G . n B 2 23 SER 23 23 23 SER SER G . n B 2 24 GLY 24 24 24 GLY GLY G . n B 2 25 SER 25 25 25 SER SER G . n B 2 26 SER 26 26 26 SER SER G . n B 2 27 SER 27 27 27 SER SER G . n B 2 28 ASN 28 28 28 ASN ASN G . n B 2 29 ILE 29 29 29 ILE ILE G . n B 2 30 GLY 30 30 30 GLY GLY G . n B 2 31 ASN 31 31 31 ASN ASN G . n B 2 32 ASN 32 32 32 ASN ASN G . n B 2 33 TYR 33 33 33 TYR TYR G . n B 2 34 VAL 34 34 34 VAL VAL G . n B 2 35 SER 35 35 35 SER SER G . n B 2 36 TRP 36 36 36 TRP TRP G . n B 2 37 TYR 37 37 37 TYR TYR G . n B 2 38 GLN 38 38 38 GLN GLN G . n B 2 39 GLN 39 39 39 GLN GLN G . n B 2 40 LEU 40 40 40 LEU LEU G . n B 2 41 PRO 41 41 41 PRO PRO G . n B 2 42 GLY 42 42 42 GLY GLY G . n B 2 43 THR 43 43 43 THR THR G . n B 2 44 ALA 44 44 44 ALA ALA G . n B 2 45 PRO 45 45 45 PRO PRO G . n B 2 46 LYS 46 46 46 LYS LYS G . n B 2 47 LEU 47 47 47 LEU LEU G . n B 2 48 LEU 48 48 48 LEU LEU G . n B 2 49 ILE 49 49 49 ILE ILE G . n B 2 50 TYR 50 50 50 TYR TYR G . n B 2 51 ASP 51 51 51 ASP ASP G . n B 2 52 ASN 52 52 52 ASN ASN G . n B 2 53 ASN 53 53 53 ASN ASN G . n B 2 54 LYS 54 54 54 LYS LYS G . n B 2 55 ARG 55 55 55 ARG ARG G . n B 2 56 PRO 56 56 56 PRO PRO G . n B 2 57 SER 57 57 57 SER SER G . n B 2 58 GLY 58 58 58 GLY GLY G . n B 2 59 ILE 59 59 59 ILE ILE G . n B 2 60 PRO 60 60 60 PRO PRO G . n B 2 61 ASP 61 61 61 ASP ASP G . n B 2 62 ARG 62 62 62 ARG ARG G . n B 2 63 PHE 63 63 63 PHE PHE G . n B 2 64 SER 64 64 64 SER SER G . n B 2 65 GLY 65 65 65 GLY GLY G . n B 2 66 SER 66 66 66 SER SER G . n B 2 67 LYS 67 67 67 LYS LYS G . n B 2 68 SER 68 68 68 SER SER G . n B 2 69 GLY 69 69 69 GLY GLY G . n B 2 70 THR 70 70 70 THR THR G . n B 2 71 SER 71 71 71 SER SER G . n B 2 72 ALA 72 72 72 ALA ALA G . n B 2 73 THR 73 73 73 THR THR G . n B 2 74 LEU 74 74 74 LEU LEU G . n B 2 75 GLY 75 75 75 GLY GLY G . n B 2 76 ILE 76 76 76 ILE ILE G . n B 2 77 THR 77 77 77 THR THR G . n B 2 78 GLY 78 78 78 GLY GLY G . n B 2 79 LEU 79 79 79 LEU LEU G . n B 2 80 GLN 80 80 80 GLN GLN G . n B 2 81 THR 81 81 81 THR THR G . n B 2 82 GLY 82 82 82 GLY GLY G . n B 2 83 ASP 83 83 83 ASP ASP G . n B 2 84 GLU 84 84 84 GLU GLU G . n B 2 85 ALA 85 85 85 ALA ALA G . n B 2 86 ASP 86 86 86 ASP ASP G . n B 2 87 TYR 87 87 87 TYR TYR G . n B 2 88 TYR 88 88 88 TYR TYR G . n B 2 89 CYS 89 89 89 CYS CYS G . n B 2 90 GLY 90 90 90 GLY GLY G . n B 2 91 THR 91 91 91 THR THR G . n B 2 92 TRP 92 92 92 TRP TRP G . n B 2 93 ASP 93 93 93 ASP ASP G . n B 2 94 SER 94 94 94 SER SER G . n B 2 95 SER 95 95 95 SER SER G . n B 2 96 LEU 96 96 96 LEU LEU G . n B 2 97 SER 97 97 97 SER SER G . n B 2 98 ALA 98 98 98 ALA ALA G . n B 2 99 VAL 99 99 99 VAL VAL G . n B 2 100 VAL 100 100 100 VAL VAL G . n B 2 101 PHE 101 101 101 PHE PHE G . n B 2 102 GLY 102 102 102 GLY GLY G . n B 2 103 GLY 103 103 103 GLY GLY G . n B 2 104 GLY 104 104 104 GLY GLY G . n B 2 105 THR 105 105 105 THR THR G . n B 2 106 LYS 106 106 106 LYS LYS G . n B 2 107 LEU 107 107 107 LEU LEU G . n B 2 108 THR 108 108 108 THR THR G . n B 2 109 VAL 109 109 109 VAL VAL G . n B 2 110 LEU 110 110 110 LEU LEU G . n C 3 1 GLU 1 1 1 GLU GLU N . n C 3 2 VAL 2 2 2 VAL VAL N . n C 3 3 GLN 3 3 3 GLN GLN N . n C 3 4 LEU 4 4 4 LEU LEU N . n C 3 5 LEU 5 5 5 LEU LEU N . n C 3 6 GLU 6 6 6 GLU GLU N . n C 3 7 GLN 7 7 7 GLN GLN N . n C 3 8 SER 8 8 8 SER SER N . n C 3 9 GLY 9 9 9 GLY GLY N . n C 3 10 ALA 10 10 10 ALA ALA N . n C 3 11 GLU 11 11 11 GLU GLU N . n C 3 12 VAL 12 12 12 VAL VAL N . n C 3 13 LYS 13 13 13 LYS LYS N . n C 3 14 LYS 14 14 14 LYS LYS N . n C 3 15 PRO 15 15 15 PRO PRO N . n C 3 16 GLY 16 16 16 GLY GLY N . n C 3 17 ALA 17 17 17 ALA ALA N . n C 3 18 SER 18 18 18 SER SER N . n C 3 19 VAL 19 19 19 VAL VAL N . n C 3 20 ARG 20 20 20 ARG ARG N . n C 3 21 VAL 21 21 21 VAL VAL N . n C 3 22 SER 22 22 22 SER SER N . n C 3 23 CYS 23 23 23 CYS CYS N . n C 3 24 LYS 24 24 24 LYS LYS N . n C 3 25 VAL 25 25 25 VAL VAL N . n C 3 26 SER 26 26 26 SER SER N . n C 3 27 GLY 27 27 27 GLY GLY N . n C 3 28 TYR 28 28 28 TYR TYR N . n C 3 29 THR 29 29 29 THR THR N . n C 3 30 LEU 30 30 30 LEU LEU N . n C 3 31 PRO 31 31 31 PRO PRO N . n C 3 32 GLU 32 32 32 GLU GLU N . n C 3 33 VAL 33 33 33 VAL VAL N . n C 3 34 ALA 34 34 34 ALA ALA N . n C 3 35 MET 35 35 35 MET MET N . n C 3 36 HIS 36 36 36 HIS HIS N . n C 3 37 TRP 37 37 37 TRP TRP N . n C 3 38 VAL 38 38 38 VAL VAL N . n C 3 39 ARG 39 39 39 ARG ARG N . n C 3 40 GLN 40 40 40 GLN GLN N . n C 3 41 ALA 41 41 41 ALA ALA N . n C 3 42 PRO 42 42 42 PRO PRO N . n C 3 43 GLY 43 43 43 GLY GLY N . n C 3 44 LYS 44 44 44 LYS LYS N . n C 3 45 GLY 45 45 45 GLY GLY N . n C 3 46 LEU 46 46 46 LEU LEU N . n C 3 47 GLU 47 47 47 GLU GLU N . n C 3 48 TRP 48 48 48 TRP TRP N . n C 3 49 MET 49 49 49 MET MET N . n C 3 50 GLY 50 50 50 GLY GLY N . n C 3 51 GLY 51 51 51 GLY GLY N . n C 3 52 PHE 52 52 52 PHE PHE N . n C 3 53 ASP 53 53 53 ASP ASP N . n C 3 54 PRO 54 54 54 PRO PRO N . n C 3 55 GLU 55 55 55 GLU GLU N . n C 3 56 ASP 56 56 56 ASP ASP N . n C 3 57 GLY 57 57 57 GLY GLY N . n C 3 58 GLU 58 58 58 GLU GLU N . n C 3 59 THR 59 59 59 THR THR N . n C 3 60 MET 60 60 60 MET MET N . n C 3 61 TYR 61 61 61 TYR TYR N . n C 3 62 ALA 62 62 62 ALA ALA N . n C 3 63 GLN 63 63 63 GLN GLN N . n C 3 64 LYS 64 64 64 LYS LYS N . n C 3 65 PHE 65 65 65 PHE PHE N . n C 3 66 GLN 66 66 66 GLN GLN N . n C 3 67 GLY 67 67 67 GLY GLY N . n C 3 68 ARG 68 68 68 ARG ARG N . n C 3 69 VAL 69 69 69 VAL VAL N . n C 3 70 THR 70 70 70 THR THR N . n C 3 71 MET 71 71 71 MET MET N . n C 3 72 THR 72 72 72 THR THR N . n C 3 73 GLU 73 73 73 GLU GLU N . n C 3 74 ASP 74 74 74 ASP ASP N . n C 3 75 THR 75 75 75 THR THR N . n C 3 76 SER 76 76 76 SER SER N . n C 3 77 THR 77 77 77 THR THR N . n C 3 78 ASP 78 78 78 ASP ASP N . n C 3 79 THR 79 79 79 THR THR N . n C 3 80 ALA 80 80 80 ALA ALA N . n C 3 81 TYR 81 81 81 TYR TYR N . n C 3 82 MET 82 82 82 MET MET N . n C 3 83 GLU 83 83 83 GLU GLU N . n C 3 84 LEU 84 84 84 LEU LEU N . n C 3 85 SER 85 85 85 SER SER N . n C 3 86 SER 86 86 86 SER SER N . n C 3 87 LEU 87 87 87 LEU LEU N . n C 3 88 ARG 88 88 88 ARG ARG N . n C 3 89 SER 89 89 89 SER SER N . n C 3 90 GLU 90 90 90 GLU GLU N . n C 3 91 ASP 91 91 91 ASP ASP N . n C 3 92 THR 92 92 92 THR THR N . n C 3 93 ALA 93 93 93 ALA ALA N . n C 3 94 VAL 94 94 94 VAL VAL N . n C 3 95 TYR 95 95 95 TYR TYR N . n C 3 96 TYR 96 96 96 TYR TYR N . n C 3 97 CYS 97 97 97 CYS CYS N . n C 3 98 ALA 98 98 98 ALA ALA N . n C 3 99 THR 99 99 99 THR THR N . n C 3 100 THR 100 100 100 THR THR N . n C 3 101 THR 101 101 101 THR THR N . n C 3 102 PRO 102 102 102 PRO PRO N . n C 3 103 PHE 103 103 103 PHE PHE N . n C 3 104 SER 104 104 104 SER SER N . n C 3 105 SER 105 105 105 SER SER N . n C 3 106 SER 106 106 106 SER SER N . n C 3 107 TYR 107 107 107 TYR TYR N . n C 3 108 TRP 108 108 108 TRP TRP N . n C 3 109 PHE 109 109 109 PHE PHE N . n C 3 110 ASP 110 110 110 ASP ASP N . n C 3 111 PRO 111 111 111 PRO PRO N . n C 3 112 TRP 112 112 112 TRP TRP N . n C 3 113 GLY 113 113 113 GLY GLY N . n C 3 114 GLN 114 114 114 GLN GLN N . n C 3 115 GLY 115 115 115 GLY GLY N . n C 3 116 THR 116 116 116 THR THR N . n C 3 117 LEU 117 117 117 LEU LEU N . n C 3 118 VAL 118 118 118 VAL VAL N . n C 3 119 THR 119 119 119 THR THR N . n C 3 120 VAL 120 120 120 VAL VAL N . n C 3 121 SER 121 121 ? ? ? N . n C 3 122 SER 122 122 ? ? ? N . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3400 ? 1 MORE -22 ? 1 'SSA (A^2)' 22970 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-04-07 2 'Structure model' 1 1 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_database_2.pdbx_DOI' 13 2 'Structure model' '_database_2.pdbx_database_accession' # _em_3d_fitting.entry_id 7D4G _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7D4G _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 450378 _em_3d_reconstruction.resolution 3.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 ? 'FC05 Fab binds to SARS-CoV-2 Spike' RECOMBINANT COMPLEX '1, 2, 3' ? ? 2 1 ? 'Spike protein S1' RECOMBINANT COMPLEX 1 ? ? 3 1 ? 'FC05 Fab' RECOMBINANT COMPLEX 2,3 ? ? # _em_imaging.id 1 _em_imaging.entry_id 7D4G _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7D4G _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7D4G _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O N GLU 32 ? ? CG N PRO 102 ? ? 1.92 2 1 O N ASP 91 ? ? OH N TYR 95 ? ? 2.12 3 1 O N GLU 32 ? ? CB N PRO 102 ? ? 2.12 4 1 NH1 B ARG 273 ? ? OD2 B ASP 290 ? ? 2.13 5 1 CB N PRO 54 ? ? CB N SER 104 ? ? 2.13 6 1 CG2 B VAL 42 ? ? NH1 B ARG 44 ? ? 2.16 7 1 O G ARG 62 ? ? OG1 G THR 77 ? ? 2.16 8 1 CB N PRO 54 ? ? OG N SER 104 ? ? 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR B 20 ? ? 64.65 -138.13 2 1 ARG B 21 ? ? -133.96 -64.53 3 1 LEU B 24 ? ? 75.21 155.84 4 1 PHE B 32 ? ? -81.32 -72.51 5 1 ALA B 67 ? ? -78.51 -158.67 6 1 THR B 73 ? ? -131.37 -67.55 7 1 THR B 76 ? ? 60.97 69.78 8 1 ASN B 87 ? ? 57.46 -136.17 9 1 THR B 95 ? ? -106.77 -75.22 10 1 ARG B 102 ? ? -127.09 -59.90 11 1 THR B 108 ? ? -122.38 -66.69 12 1 ASP B 111 ? ? -161.92 -169.88 13 1 LYS B 113 ? ? 78.70 -15.43 14 1 ASN B 121 ? ? -162.88 61.34 15 1 LYS B 147 ? ? 60.75 -10.30 16 1 ASN B 149 ? ? 73.87 -10.26 17 1 ASN B 165 ? ? 64.52 -0.09 18 1 LEU B 179 ? ? -135.64 -62.34 19 1 GLU B 180 ? ? 57.57 -147.56 20 1 ASN B 185 ? ? 67.71 -13.52 21 1 LYS B 187 ? ? 71.77 -10.00 22 1 ARG B 214 ? ? -132.67 -69.58 23 1 LEU B 226 ? ? -84.15 -72.58 24 1 ILE B 231 ? ? -88.35 -73.79 25 1 THR B 259 ? ? 65.25 71.93 26 1 GLN B 271 ? ? -178.04 139.12 27 1 THR B 286 ? ? -127.75 -72.10 28 1 ASN G 28 ? ? -127.18 -67.39 29 1 LEU G 48 ? ? -94.13 -66.63 30 1 ASP G 51 ? ? 58.41 17.61 31 1 ASN G 52 ? ? 64.18 -20.50 32 1 SER N 8 ? ? -131.56 -56.47 33 1 PRO N 31 ? ? -90.53 42.23 34 1 ASP N 56 ? ? 66.58 -12.32 35 1 SER N 104 ? ? 80.62 -169.75 36 1 ASP N 110 ? ? 69.23 175.21 37 1 GLN N 114 ? ? 74.20 -16.52 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ALA B 123 ? ? THR B 124 ? ? 149.99 2 1 TYR B 248 ? ? LEU B 249 ? ? -141.81 3 1 SER N 8 ? ? GLY N 9 ? ? -144.92 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B SER 45 ? OG ? A SER 33 OG 2 1 Y 1 B GLU 154 ? CG ? A GLU 142 CG 3 1 Y 1 B GLU 154 ? CD ? A GLU 142 CD 4 1 Y 1 B GLU 154 ? OE1 ? A GLU 142 OE1 5 1 Y 1 B GLU 154 ? OE2 ? A GLU 142 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B SER 13 ? A SER 1 2 1 Y 1 B GLY 252 ? A GLY 240 3 1 Y 1 B ASP 253 ? A ASP 241 4 1 Y 1 B SER 254 ? A SER 242 5 1 Y 1 B SER 255 ? A SER 243 6 1 Y 1 G GLN 1 ? B GLN 1 7 1 Y 1 N SER 121 ? C SER 121 8 1 Y 1 N SER 122 ? C SER 122 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 2 1 ? ? 2697049 ? ? 'Severe acute respiratory syndrome coronavirus 2' ? ? 3 2 ? ? 9606 ? ? 'Homo sapiens' ? ? # loop_ _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain 2 1 HEK293T 9606 'Homo sapiens' ? ? 3 2 HEK293T 9606 'Homo sapiens' ? ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 QUANTUM (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #