data_7D7W # _entry.id 7D7W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7D7W pdb_00007d7w 10.2210/pdb7d7w/pdb WWPDB D_1300018908 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7D7W _pdbx_database_status.recvd_initial_deposition_date 2020-10-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, H.' 1 0000-0001-7436-5895 'Ren, A.M.' 2 0000-0002-5420-4899 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 48 _citation.language ? _citation.page_first 12394 _citation.page_last 12406 _citation.title 'Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaa1029 _citation.pdbx_database_id_PubMed 33170270 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, H.' 1 ? primary 'Egger, M.' 2 ? primary 'Xu, X.' 3 ? primary 'Flemmich, L.' 4 ? primary 'Krasheninina, O.' 5 ? primary 'Sun, A.' 6 ? primary 'Micura, R.' 7 ? primary 'Ren, A.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7D7W _cell.details ? _cell.formula_units_Z ? _cell.length_a 55.392 _cell.length_a_esd ? _cell.length_b 57.442 _cell.length_b_esd ? _cell.length_c 196.444 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D7W _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '18GAAA (52-MER)' 16438.873 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 1 ? ? ? ? 3 non-polymer syn NICOTINAMIDE-ADENINE-DINUCLEOTIDE 663.425 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 11 ? ? ? ? 5 water nat water 18.015 43 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCUUCAACAACCCCGUAGGUGGGGACGAAAGUCAGCGCACCUACUGGAGCC _entity_poly.pdbx_seq_one_letter_code_can GCUUCAACAACCCCGUAGGUGGGGACGAAAGUCAGCGCACCUACUGGAGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 U n 1 4 U n 1 5 C n 1 6 A n 1 7 A n 1 8 C n 1 9 A n 1 10 A n 1 11 C n 1 12 C n 1 13 C n 1 14 C n 1 15 G n 1 16 U n 1 17 A n 1 18 G n 1 19 G n 1 20 U n 1 21 G n 1 22 G n 1 23 G n 1 24 G n 1 25 A n 1 26 C n 1 27 G n 1 28 A n 1 29 A n 1 30 A n 1 31 G n 1 32 U n 1 33 C n 1 34 A n 1 35 G n 1 36 C n 1 37 G n 1 38 C n 1 39 A n 1 40 C n 1 41 C n 1 42 U n 1 43 A n 1 44 C n 1 45 U n 1 46 G n 1 47 G n 1 48 A n 1 49 G n 1 50 C n 1 51 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 51 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7D7W _struct_ref.pdbx_db_accession 7D7W _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7D7W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 51 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7D7W _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 52 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 52 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NAD non-polymer . NICOTINAMIDE-ADENINE-DINUCLEOTIDE ? 'C21 H27 N7 O14 P2' 663.425 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7D7W _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.75 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 74.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M MES pH 6.5, 1.6 M MgSO4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-12-28 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97930 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97930 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7D7W _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.3910 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12783 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.800 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.000 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.898 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.085 _reflns.pdbx_Rpim_I_all 0.024 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.400 2.440 ? ? ? ? ? ? 615 100.000 ? ? ? ? 1.429 ? ? ? ? ? ? ? ? 12.100 ? 0.415 ? ? 1.492 0.425 ? 1 1 0.928 ? ? 2.440 2.490 ? ? ? ? ? ? 620 100.000 ? ? ? ? 1.159 ? ? ? ? ? ? ? ? 11.800 ? 0.434 ? ? 1.212 0.348 ? 2 1 0.900 ? ? 2.490 2.530 ? ? ? ? ? ? 629 98.900 ? ? ? ? 1.028 ? ? ? ? ? ? ? ? 12.200 ? 0.425 ? ? 1.072 0.302 ? 3 1 0.936 ? ? 2.530 2.590 ? ? ? ? ? ? 634 100.000 ? ? ? ? 0.936 ? ? ? ? ? ? ? ? 13.300 ? 0.432 ? ? 0.973 0.263 ? 4 1 0.948 ? ? 2.590 2.640 ? ? ? ? ? ? 618 99.000 ? ? ? ? 0.710 ? ? ? ? ? ? ? ? 13.600 ? 0.448 ? ? 0.737 0.197 ? 5 1 0.966 ? ? 2.640 2.700 ? ? ? ? ? ? 623 100.000 ? ? ? ? 0.663 ? ? ? ? ? ? ? ? 13.400 ? 0.812 ? ? 0.689 0.186 ? 6 1 0.963 ? ? 2.700 2.770 ? ? ? ? ? ? 635 99.200 ? ? ? ? 0.396 ? ? ? ? ? ? ? ? 13.500 ? 0.491 ? ? 0.412 0.111 ? 7 1 0.995 ? ? 2.770 2.850 ? ? ? ? ? ? 641 100.000 ? ? ? ? 0.265 ? ? ? ? ? ? ? ? 13.300 ? 0.493 ? ? 0.275 0.075 ? 8 1 0.993 ? ? 2.850 2.930 ? ? ? ? ? ? 625 99.500 ? ? ? ? 0.174 ? ? ? ? ? ? ? ? 13.400 ? 0.518 ? ? 0.181 0.049 ? 9 1 0.998 ? ? 2.930 3.020 ? ? ? ? ? ? 626 100.000 ? ? ? ? 0.128 ? ? ? ? ? ? ? ? 13.100 ? 0.576 ? ? 0.133 0.036 ? 10 1 0.999 ? ? 3.020 3.130 ? ? ? ? ? ? 636 99.700 ? ? ? ? 0.095 ? ? ? ? ? ? ? ? 12.800 ? 0.687 ? ? 0.100 0.028 ? 11 1 0.999 ? ? 3.130 3.260 ? ? ? ? ? ? 624 99.700 ? ? ? ? 0.085 ? ? ? ? ? ? ? ? 12.000 ? 0.802 ? ? 0.089 0.027 ? 12 1 0.998 ? ? 3.260 3.410 ? ? ? ? ? ? 638 99.800 ? ? ? ? 0.077 ? ? ? ? ? ? ? ? 12.900 ? 0.899 ? ? 0.081 0.023 ? 13 1 0.999 ? ? 3.410 3.580 ? ? ? ? ? ? 646 100.000 ? ? ? ? 0.078 ? ? ? ? ? ? ? ? 13.600 ? 1.310 ? ? 0.081 0.022 ? 14 1 0.999 ? ? 3.580 3.810 ? ? ? ? ? ? 639 99.800 ? ? ? ? 0.074 ? ? ? ? ? ? ? ? 13.300 ? 1.384 ? ? 0.077 0.021 ? 15 1 0.999 ? ? 3.810 4.100 ? ? ? ? ? ? 651 100.000 ? ? ? ? 0.071 ? ? ? ? ? ? ? ? 13.100 ? 1.576 ? ? 0.074 0.020 ? 16 1 0.999 ? ? 4.100 4.520 ? ? ? ? ? ? 646 99.800 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 12.600 ? 1.418 ? ? 0.068 0.019 ? 17 1 0.998 ? ? 4.520 5.170 ? ? ? ? ? ? 654 100.000 ? ? ? ? 0.062 ? ? ? ? ? ? ? ? 12.000 ? 1.593 ? ? 0.065 0.019 ? 18 1 0.998 ? ? 5.170 6.510 ? ? ? ? ? ? 665 100.000 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? 13.000 ? 1.483 ? ? 0.066 0.018 ? 19 1 0.998 ? ? 6.510 50.000 ? ? ? ? ? ? 718 99.300 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? 11.100 ? 1.664 ? ? 0.065 0.019 ? 20 1 0.998 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 133.190 _refine.B_iso_mean 84.9277 _refine.B_iso_min 61.810 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7D7W _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.3910 _refine.ls_d_res_low 25.0340 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12594 _refine.ls_number_reflns_R_free 655 _refine.ls_number_reflns_R_work 11939 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.1500 _refine.ls_percent_reflns_R_free 5.2000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2175 _refine.ls_R_factor_R_free 0.2355 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2165 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7D7V _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 37.6900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3600 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.3910 _refine_hist.d_res_low 25.0340 _refine_hist.number_atoms_solvent 43 _refine_hist.number_atoms_total 1217 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 52 _refine_hist.pdbx_B_iso_mean_ligand 98.19 _refine_hist.pdbx_B_iso_mean_solvent 77.55 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1119 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.3911 2.5755 . . 135 2325 98.0000 . . . 0.4725 0.0000 0.4253 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5755 2.8344 . . 121 2369 99.0000 . . . 0.4209 0.0000 0.3632 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8344 3.2438 . . 126 2337 97.0000 . . . 0.2578 0.0000 0.2567 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2438 4.0839 . . 134 2391 98.0000 . . . 0.2252 0.0000 0.2037 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.0839 25.0340 . . 139 2517 99.0000 . . . 0.1916 0.0000 0.1765 . . . . . . . . . . . # _struct.entry_id 7D7W _struct.title 'Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7D7W _struct_keywords.text 'riboswitch, RNA structure, RNA folding, RNA-ligand interactions, RNA crystallography, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 6 OP2 ? ? ? 1_555 J MG . MG ? ? A A 7 A MG 109 1_555 ? ? ? ? ? ? ? 2.596 ? ? metalc2 metalc ? ? A A 7 OP2 ? ? ? 1_555 D MG . MG ? ? A A 8 A MG 103 1_555 ? ? ? ? ? ? ? 1.874 ? ? metalc3 metalc ? ? A A 7 OP1 ? ? ? 1_555 E MG . MG ? ? A A 8 A MG 104 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc4 metalc ? ? A C 8 OP2 ? ? ? 1_555 D MG . MG ? ? A C 9 A MG 103 1_555 ? ? ? ? ? ? ? 1.972 ? ? metalc5 metalc ? ? A A 10 OP2 ? ? ? 1_555 F MG . MG ? ? A A 11 A MG 105 2_455 ? ? ? ? ? ? ? 2.195 ? ? metalc6 metalc ? ? A U 16 OP1 ? ? ? 1_555 F MG . MG ? ? A U 17 A MG 105 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc7 metalc ? ? A A 34 OP2 ? ? ? 1_555 N MG . MG ? ? A A 35 A MG 113 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc8 metalc ? ? A G 46 O6 ? ? ? 1_555 I MG . MG ? ? A G 47 A MG 108 1_555 ? ? ? ? ? ? ? 2.337 ? ? metalc9 metalc ? ? B GTP . O2B ? ? ? 1_555 M MG . MG ? ? A GTP 101 A MG 112 1_555 ? ? ? ? ? ? ? 2.698 ? ? metalc10 metalc ? ? B GTP . O2A ? ? ? 1_555 M MG . MG ? ? A GTP 101 A MG 112 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc11 metalc ? ? C NAD . O2A ? ? ? 1_555 E MG . MG ? ? A NAD 102 A MG 104 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc12 metalc ? ? C NAD . O3 ? ? ? 1_555 E MG . MG ? ? A NAD 102 A MG 104 1_555 ? ? ? ? ? ? ? 2.915 ? ? metalc13 metalc ? ? C NAD . O1N ? ? ? 1_555 E MG . MG ? ? A NAD 102 A MG 104 1_555 ? ? ? ? ? ? ? 2.713 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 103 A HOH 203 1_555 ? ? ? ? ? ? ? 2.273 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 103 A HOH 211 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 103 A HOH 213 1_555 ? ? ? ? ? ? ? 2.197 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 104 A HOH 205 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 104 A HOH 206 1_555 ? ? ? ? ? ? ? 2.388 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 104 A HOH 221 1_555 ? ? ? ? ? ? ? 2.019 ? ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 105 A HOH 204 2_455 ? ? ? ? ? ? ? 1.973 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 105 A HOH 209 2_455 ? ? ? ? ? ? ? 2.246 ? ? metalc22 metalc ? ? F MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 105 A HOH 218 2_455 ? ? ? ? ? ? ? 2.468 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 105 A HOH 225 2_455 ? ? ? ? ? ? ? 2.187 ? ? metalc24 metalc ? ? G MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 106 A HOH 210 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc25 metalc ? ? G MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 106 A HOH 216 1_555 ? ? ? ? ? ? ? 2.567 ? ? metalc26 metalc ? ? G MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 106 A HOH 223 1_555 ? ? ? ? ? ? ? 2.751 ? ? metalc27 metalc ? ? G MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 106 A HOH 229 1_555 ? ? ? ? ? ? ? 2.541 ? ? metalc28 metalc ? ? G MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 106 A HOH 234 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc29 metalc ? ? G MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 106 A HOH 242 8_444 ? ? ? ? ? ? ? 2.138 ? ? metalc30 metalc ? ? H MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 107 A HOH 208 1_555 ? ? ? ? ? ? ? 2.671 ? ? metalc31 metalc ? ? H MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 107 A HOH 231 1_555 ? ? ? ? ? ? ? 1.991 ? ? metalc32 metalc ? ? H MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 107 A HOH 238 8_444 ? ? ? ? ? ? ? 2.347 ? ? metalc33 metalc ? ? H MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 107 A HOH 239 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc34 metalc ? ? H MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 107 A HOH 241 8_444 ? ? ? ? ? ? ? 2.155 ? ? metalc35 metalc ? ? H MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 107 A HOH 243 1_555 ? ? ? ? ? ? ? 2.502 ? ? metalc36 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 108 A HOH 201 1_555 ? ? ? ? ? ? ? 2.689 ? ? metalc37 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 108 A HOH 207 1_555 ? ? ? ? ? ? ? 2.294 ? ? metalc38 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 108 A HOH 212 1_555 ? ? ? ? ? ? ? 2.375 ? ? metalc39 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 108 A HOH 230 1_555 ? ? ? ? ? ? ? 2.705 ? ? metalc40 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 108 A HOH 233 1_555 ? ? ? ? ? ? ? 2.036 ? ? metalc41 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 109 A HOH 202 1_555 ? ? ? ? ? ? ? 2.302 ? ? metalc42 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 109 A HOH 214 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc43 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 109 A HOH 219 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc44 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 109 A HOH 222 1_555 ? ? ? ? ? ? ? 2.470 ? ? metalc45 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 109 A HOH 226 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc46 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 110 A HOH 220 1_555 ? ? ? ? ? ? ? 2.570 ? ? metalc47 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 110 A HOH 227 1_555 ? ? ? ? ? ? ? 2.231 ? ? metalc48 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 110 A HOH 232 2_455 ? ? ? ? ? ? ? 2.524 ? ? metalc49 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 110 A HOH 235 1_555 ? ? ? ? ? ? ? 2.225 ? ? metalc50 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 110 A HOH 240 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc51 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 111 A HOH 215 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc52 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 111 A HOH 224 1_555 ? ? ? ? ? ? ? 2.508 ? ? metalc53 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 111 A HOH 228 1_555 ? ? ? ? ? ? ? 2.371 ? ? metalc54 metalc ? ? L MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 111 A HOH 236 1_555 ? ? ? ? ? ? ? 2.396 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 2 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 2 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 2 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 49 N1 ? ? A C 3 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 3 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 3 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 48 N1 ? ? A U 4 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 48 N6 ? ? A U 4 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 A G 47 O6 ? ? A U 5 A G 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A U 4 O2 ? ? ? 1_555 A G 47 N1 ? ? A U 5 A G 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 46 N1 ? ? A C 6 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 46 O6 ? ? A C 6 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 46 N2 ? ? A C 6 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 45 N3 ? ? A A 7 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 45 O4 ? ? A A 7 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 13 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 13 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 13 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 14 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 14 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 14 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 43 N1 ? ? A U 17 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 43 N6 ? ? A U 17 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 42 N3 ? ? A A 18 A U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 42 O4 ? ? A A 18 A U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 20 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 20 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 20 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 39 N1 ? ? A U 21 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 20 O4 ? ? ? 1_555 A A 39 N6 ? ? A U 21 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 23 N1 ? ? ? 1_555 A A 34 N1 ? ? A G 24 A A 35 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog44 hydrog ? ? A G 23 O6 ? ? ? 1_555 A A 34 N6 ? ? A G 24 A A 35 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog45 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 25 N1 ? ? ? 1_555 A U 32 N3 ? ? A A 26 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 32 O4 ? ? A A 26 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 27 N2 ? ? ? 1_555 A A 30 N7 ? ? A G 28 A A 31 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog54 hydrog ? ? A G 27 N3 ? ? ? 1_555 A A 30 N6 ? ? A G 28 A A 31 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 7D7W _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.018053 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017409 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005091 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 2 2 G G A . n A 1 2 C 2 3 3 C C A . n A 1 3 U 3 4 4 U U A . n A 1 4 U 4 5 5 U U A . n A 1 5 C 5 6 6 C C A . n A 1 6 A 6 7 7 A A A . n A 1 7 A 7 8 8 A A A . n A 1 8 C 8 9 9 C C A . n A 1 9 A 9 10 10 A A A . n A 1 10 A 10 11 11 A A A . n A 1 11 C 11 12 12 C C A . n A 1 12 C 12 13 13 C C A . n A 1 13 C 13 14 14 C C A . n A 1 14 C 14 15 15 C C A . n A 1 15 G 15 16 16 G G A . n A 1 16 U 16 17 17 U U A . n A 1 17 A 17 18 18 A A A . n A 1 18 G 18 19 19 G G A . n A 1 19 G 19 20 20 G G A . n A 1 20 U 20 21 21 U U A . n A 1 21 G 21 22 22 G G A . n A 1 22 G 22 23 23 G G A . n A 1 23 G 23 24 24 G G A . n A 1 24 G 24 25 25 G G A . n A 1 25 A 25 26 26 A A A . n A 1 26 C 26 27 27 C C A . n A 1 27 G 27 28 28 G G A . n A 1 28 A 28 29 29 A A A . n A 1 29 A 29 30 30 A A A . n A 1 30 A 30 31 31 A A A . n A 1 31 G 31 32 32 G G A . n A 1 32 U 32 33 33 U U A . n A 1 33 C 33 34 34 C C A . n A 1 34 A 34 35 35 A A A . n A 1 35 G 35 36 36 G G A . n A 1 36 C 36 37 37 C C A . n A 1 37 G 37 38 38 G G A . n A 1 38 C 38 39 39 C C A . n A 1 39 A 39 40 40 A A A . n A 1 40 C 40 41 41 C C A . n A 1 41 C 41 42 42 C C A . n A 1 42 U 42 43 43 U U A . n A 1 43 A 43 44 44 A A A . n A 1 44 C 44 45 45 C C A . n A 1 45 U 45 46 46 U U A . n A 1 46 G 46 47 47 G G A . n A 1 47 G 47 48 48 G G A . n A 1 48 A 48 49 49 A A A . n A 1 49 G 49 50 50 G G A . n A 1 50 C 50 51 51 C C A . n A 1 51 C 51 52 52 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP 1 101 1 GTP GTP A . C 3 NAD 1 102 1 NAD NAD A . D 4 MG 1 103 1 MG MG A . E 4 MG 1 104 3 MG MG A . F 4 MG 1 105 5 MG MG A . G 4 MG 1 106 14 MG MG A . H 4 MG 1 107 15 MG MG A . I 4 MG 1 108 16 MG MG A . J 4 MG 1 109 17 MG MG A . K 4 MG 1 110 18 MG MG A . L 4 MG 1 111 19 MG MG A . M 4 MG 1 112 20 MG MG A . N 4 MG 1 113 21 MG MG A . O 5 HOH 1 201 122 HOH HOH A . O 5 HOH 2 202 128 HOH HOH A . O 5 HOH 3 203 1 HOH HOH A . O 5 HOH 4 204 20 HOH HOH A . O 5 HOH 5 205 8 HOH HOH A . O 5 HOH 6 206 9 HOH HOH A . O 5 HOH 7 207 126 HOH HOH A . O 5 HOH 8 208 117 HOH HOH A . O 5 HOH 9 209 23 HOH HOH A . O 5 HOH 10 210 110 HOH HOH A . O 5 HOH 11 211 2 HOH HOH A . O 5 HOH 12 212 124 HOH HOH A . O 5 HOH 13 213 3 HOH HOH A . O 5 HOH 14 214 130 HOH HOH A . O 5 HOH 15 215 140 HOH HOH A . O 5 HOH 16 216 108 HOH HOH A . O 5 HOH 17 217 137 HOH HOH A . O 5 HOH 18 218 89 HOH HOH A . O 5 HOH 19 219 131 HOH HOH A . O 5 HOH 20 220 136 HOH HOH A . O 5 HOH 21 221 11 HOH HOH A . O 5 HOH 22 222 132 HOH HOH A . O 5 HOH 23 223 113 HOH HOH A . O 5 HOH 24 224 139 HOH HOH A . O 5 HOH 25 225 22 HOH HOH A . O 5 HOH 26 226 129 HOH HOH A . O 5 HOH 27 227 133 HOH HOH A . O 5 HOH 28 228 142 HOH HOH A . O 5 HOH 29 229 107 HOH HOH A . O 5 HOH 30 230 123 HOH HOH A . O 5 HOH 31 231 118 HOH HOH A . O 5 HOH 32 232 135 HOH HOH A . O 5 HOH 33 233 127 HOH HOH A . O 5 HOH 34 234 112 HOH HOH A . O 5 HOH 35 235 134 HOH HOH A . O 5 HOH 36 236 141 HOH HOH A . O 5 HOH 37 237 41 HOH HOH A . O 5 HOH 38 238 116 HOH HOH A . O 5 HOH 39 239 115 HOH HOH A . O 5 HOH 40 240 138 HOH HOH A . O 5 HOH 41 241 119 HOH HOH A . O 5 HOH 42 242 106 HOH HOH A . O 5 HOH 43 243 121 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 6 ? A A 7 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 202 ? 1_555 78.5 ? 2 OP2 ? A A 6 ? A A 7 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 214 ? 1_555 142.3 ? 3 O ? O HOH . ? A HOH 202 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 214 ? 1_555 98.2 ? 4 OP2 ? A A 6 ? A A 7 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 219 ? 1_555 68.0 ? 5 O ? O HOH . ? A HOH 202 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 219 ? 1_555 64.7 ? 6 O ? O HOH . ? A HOH 214 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 219 ? 1_555 76.7 ? 7 OP2 ? A A 6 ? A A 7 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 222 ? 1_555 134.1 ? 8 O ? O HOH . ? A HOH 202 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 222 ? 1_555 136.3 ? 9 O ? O HOH . ? A HOH 214 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 222 ? 1_555 72.7 ? 10 O ? O HOH . ? A HOH 219 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 222 ? 1_555 144.9 ? 11 OP2 ? A A 6 ? A A 7 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 226 ? 1_555 78.2 ? 12 O ? O HOH . ? A HOH 202 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 226 ? 1_555 130.8 ? 13 O ? O HOH . ? A HOH 214 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 226 ? 1_555 76.1 ? 14 O ? O HOH . ? A HOH 219 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 226 ? 1_555 66.5 ? 15 O ? O HOH . ? A HOH 222 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? O HOH . ? A HOH 226 ? 1_555 89.5 ? 16 OP2 ? A A 7 ? A A 8 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 OP2 ? A C 8 ? A C 9 ? 1_555 98.3 ? 17 OP2 ? A A 7 ? A A 8 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 203 ? 1_555 101.6 ? 18 OP2 ? A C 8 ? A C 9 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 203 ? 1_555 146.1 ? 19 OP2 ? A A 7 ? A A 8 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 211 ? 1_555 162.6 ? 20 OP2 ? A C 8 ? A C 9 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 211 ? 1_555 84.1 ? 21 O ? O HOH . ? A HOH 203 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 211 ? 1_555 69.1 ? 22 OP2 ? A A 7 ? A A 8 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 213 ? 1_555 80.9 ? 23 OP2 ? A C 8 ? A C 9 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 213 ? 1_555 81.6 ? 24 O ? O HOH . ? A HOH 203 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 213 ? 1_555 74.8 ? 25 O ? O HOH . ? A HOH 211 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? O HOH . ? A HOH 213 ? 1_555 82.4 ? 26 OP1 ? A A 7 ? A A 8 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O2A ? C NAD . ? A NAD 102 ? 1_555 75.4 ? 27 OP1 ? A A 7 ? A A 8 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O3 ? C NAD . ? A NAD 102 ? 1_555 99.3 ? 28 O2A ? C NAD . ? A NAD 102 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O3 ? C NAD . ? A NAD 102 ? 1_555 57.2 ? 29 OP1 ? A A 7 ? A A 8 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O1N ? C NAD . ? A NAD 102 ? 1_555 124.9 ? 30 O2A ? C NAD . ? A NAD 102 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O1N ? C NAD . ? A NAD 102 ? 1_555 107.9 ? 31 O3 ? C NAD . ? A NAD 102 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O1N ? C NAD . ? A NAD 102 ? 1_555 51.7 ? 32 OP1 ? A A 7 ? A A 8 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 205 ? 1_555 66.8 ? 33 O2A ? C NAD . ? A NAD 102 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 205 ? 1_555 64.4 ? 34 O3 ? C NAD . ? A NAD 102 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 205 ? 1_555 121.6 ? 35 O1N ? C NAD . ? A NAD 102 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 205 ? 1_555 165.3 ? 36 OP1 ? A A 7 ? A A 8 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 206 ? 1_555 78.6 ? 37 O2A ? C NAD . ? A NAD 102 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 206 ? 1_555 127.4 ? 38 O3 ? C NAD . ? A NAD 102 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 206 ? 1_555 173.4 ? 39 O1N ? C NAD . ? A NAD 102 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 206 ? 1_555 124.5 ? 40 O ? O HOH . ? A HOH 205 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 206 ? 1_555 63.5 ? 41 OP1 ? A A 7 ? A A 8 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 221 ? 1_555 122.8 ? 42 O2A ? C NAD . ? A NAD 102 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 221 ? 1_555 83.6 ? 43 O3 ? C NAD . ? A NAD 102 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 221 ? 1_555 112.7 ? 44 O1N ? C NAD . ? A NAD 102 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 221 ? 1_555 112.1 ? 45 O ? O HOH . ? A HOH 205 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 221 ? 1_555 56.1 ? 46 O ? O HOH . ? A HOH 206 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? O HOH . ? A HOH 221 ? 1_555 73.4 ? 47 OP2 ? A A 10 ? A A 11 ? 1_555 MG ? F MG . ? A MG 105 ? 2_455 OP1 ? A U 16 ? A U 17 ? 1_555 49.5 ? 48 OP2 ? A A 10 ? A A 11 ? 1_555 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 204 ? 2_455 48.4 ? 49 OP1 ? A U 16 ? A U 17 ? 1_555 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 204 ? 2_455 11.2 ? 50 OP2 ? A A 10 ? A A 11 ? 1_555 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 209 ? 2_455 57.9 ? 51 OP1 ? A U 16 ? A U 17 ? 1_555 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 209 ? 2_455 10.4 ? 52 O ? O HOH . ? A HOH 204 ? 2_455 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 209 ? 2_455 11.1 ? 53 OP2 ? A A 10 ? A A 11 ? 1_555 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 218 ? 2_455 35.7 ? 54 OP1 ? A U 16 ? A U 17 ? 1_555 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 218 ? 2_455 14.1 ? 55 O ? O HOH . ? A HOH 204 ? 2_455 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 218 ? 2_455 14.4 ? 56 O ? O HOH . ? A HOH 209 ? 2_455 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 218 ? 2_455 22.3 ? 57 OP2 ? A A 10 ? A A 11 ? 1_555 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 225 ? 2_455 49.9 ? 58 OP1 ? A U 16 ? A U 17 ? 1_555 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 225 ? 2_455 4.4 ? 59 O ? O HOH . ? A HOH 204 ? 2_455 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 225 ? 2_455 15.6 ? 60 O ? O HOH . ? A HOH 209 ? 2_455 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 225 ? 2_455 13.4 ? 61 O ? O HOH . ? A HOH 218 ? 2_455 MG ? F MG . ? A MG 105 ? 2_455 O ? O HOH . ? A HOH 225 ? 2_455 15.8 ? 62 O6 ? A G 46 ? A G 47 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 201 ? 1_555 52.3 ? 63 O6 ? A G 46 ? A G 47 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 207 ? 1_555 66.9 ? 64 O ? O HOH . ? A HOH 201 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 207 ? 1_555 67.2 ? 65 O6 ? A G 46 ? A G 47 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 212 ? 1_555 68.1 ? 66 O ? O HOH . ? A HOH 201 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 212 ? 1_555 56.8 ? 67 O ? O HOH . ? A HOH 207 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 212 ? 1_555 122.0 ? 68 O6 ? A G 46 ? A G 47 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 230 ? 1_555 140.9 ? 69 O ? O HOH . ? A HOH 201 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 230 ? 1_555 135.9 ? 70 O ? O HOH . ? A HOH 207 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 230 ? 1_555 82.3 ? 71 O ? O HOH . ? A HOH 212 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 230 ? 1_555 150.9 ? 72 O6 ? A G 46 ? A G 47 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 233 ? 1_555 109.8 ? 73 O ? O HOH . ? A HOH 201 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 233 ? 1_555 58.1 ? 74 O ? O HOH . ? A HOH 207 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 233 ? 1_555 80.8 ? 75 O ? O HOH . ? A HOH 212 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 233 ? 1_555 82.0 ? 76 O ? O HOH . ? A HOH 230 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? O HOH . ? A HOH 233 ? 1_555 87.2 ? 77 O2B ? B GTP . ? A GTP 101 ? 1_555 MG ? M MG . ? A MG 112 ? 1_555 O2A ? B GTP . ? A GTP 101 ? 1_555 66.9 ? 78 O ? O HOH . ? A HOH 210 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 216 ? 1_555 70.8 ? 79 O ? O HOH . ? A HOH 210 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 223 ? 1_555 90.8 ? 80 O ? O HOH . ? A HOH 216 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 223 ? 1_555 129.4 ? 81 O ? O HOH . ? A HOH 210 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 229 ? 1_555 68.1 ? 82 O ? O HOH . ? A HOH 216 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 229 ? 1_555 118.6 ? 83 O ? O HOH . ? A HOH 223 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 229 ? 1_555 94.6 ? 84 O ? O HOH . ? A HOH 210 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 234 ? 1_555 50.4 ? 85 O ? O HOH . ? A HOH 216 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 234 ? 1_555 56.4 ? 86 O ? O HOH . ? A HOH 223 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 234 ? 1_555 139.2 ? 87 O ? O HOH . ? A HOH 229 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 234 ? 1_555 62.4 ? 88 O ? O HOH . ? A HOH 210 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 242 ? 8_444 102.8 ? 89 O ? O HOH . ? A HOH 216 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 242 ? 8_444 67.5 ? 90 O ? O HOH . ? A HOH 223 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 242 ? 8_444 161.8 ? 91 O ? O HOH . ? A HOH 229 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 242 ? 8_444 79.5 ? 92 O ? O HOH . ? A HOH 234 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? O HOH . ? A HOH 242 ? 8_444 52.4 ? 93 O ? O HOH . ? A HOH 208 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 231 ? 1_555 161.7 ? 94 O ? O HOH . ? A HOH 208 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 238 ? 8_444 83.0 ? 95 O ? O HOH . ? A HOH 231 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 238 ? 8_444 97.9 ? 96 O ? O HOH . ? A HOH 208 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 239 ? 1_555 156.3 ? 97 O ? O HOH . ? A HOH 231 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 239 ? 1_555 32.7 ? 98 O ? O HOH . ? A HOH 238 ? 8_444 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 239 ? 1_555 119.6 ? 99 O ? O HOH . ? A HOH 208 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 241 ? 8_444 136.6 ? 100 O ? O HOH . ? A HOH 231 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 241 ? 8_444 60.1 ? 101 O ? O HOH . ? A HOH 238 ? 8_444 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 241 ? 8_444 74.6 ? 102 O ? O HOH . ? A HOH 239 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 241 ? 8_444 53.5 ? 103 O ? O HOH . ? A HOH 208 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 243 ? 1_555 103.8 ? 104 O ? O HOH . ? A HOH 231 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 243 ? 1_555 90.2 ? 105 O ? O HOH . ? A HOH 238 ? 8_444 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 243 ? 1_555 128.0 ? 106 O ? O HOH . ? A HOH 239 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 243 ? 1_555 57.7 ? 107 O ? O HOH . ? A HOH 241 ? 8_444 MG ? H MG . ? A MG 107 ? 1_555 O ? O HOH . ? A HOH 243 ? 1_555 65.6 ? 108 O ? O HOH . ? A HOH 220 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? O HOH . ? A HOH 227 ? 1_555 84.5 ? 109 O ? O HOH . ? A HOH 220 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? O HOH . ? A HOH 232 ? 2_455 123.1 ? 110 O ? O HOH . ? A HOH 227 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? O HOH . ? A HOH 232 ? 2_455 90.7 ? 111 O ? O HOH . ? A HOH 220 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? O HOH . ? A HOH 235 ? 1_555 65.0 ? 112 O ? O HOH . ? A HOH 227 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? O HOH . ? A HOH 235 ? 1_555 129.1 ? 113 O ? O HOH . ? A HOH 232 ? 2_455 MG ? K MG . ? A MG 110 ? 1_555 O ? O HOH . ? A HOH 235 ? 1_555 75.6 ? 114 O ? O HOH . ? A HOH 220 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? O HOH . ? A HOH 240 ? 1_555 65.2 ? 115 O ? O HOH . ? A HOH 227 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? O HOH . ? A HOH 240 ? 1_555 50.0 ? 116 O ? O HOH . ? A HOH 232 ? 2_455 MG ? K MG . ? A MG 110 ? 1_555 O ? O HOH . ? A HOH 240 ? 1_555 68.8 ? 117 O ? O HOH . ? A HOH 235 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? O HOH . ? A HOH 240 ? 1_555 79.8 ? 118 O ? O HOH . ? A HOH 215 ? 1_555 MG ? L MG . ? A MG 111 ? 1_555 O ? O HOH . ? A HOH 224 ? 1_555 117.5 ? 119 O ? O HOH . ? A HOH 215 ? 1_555 MG ? L MG . ? A MG 111 ? 1_555 O ? O HOH . ? A HOH 228 ? 1_555 99.3 ? 120 O ? O HOH . ? A HOH 224 ? 1_555 MG ? L MG . ? A MG 111 ? 1_555 O ? O HOH . ? A HOH 228 ? 1_555 138.7 ? 121 O ? O HOH . ? A HOH 215 ? 1_555 MG ? L MG . ? A MG 111 ? 1_555 O ? O HOH . ? A HOH 236 ? 1_555 43.1 ? 122 O ? O HOH . ? A HOH 224 ? 1_555 MG ? L MG . ? A MG 111 ? 1_555 O ? O HOH . ? A HOH 236 ? 1_555 141.6 ? 123 O ? O HOH . ? A HOH 228 ? 1_555 MG ? L MG . ? A MG 111 ? 1_555 O ? O HOH . ? A HOH 236 ? 1_555 59.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-11-25 2 'Structure model' 1 1 2020-12-02 3 'Structure model' 1 2 2020-12-23 4 'Structure model' 1 3 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_citation.journal_volume' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 7D7W _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 231 ? ? O A HOH 239 ? ? 1.25 2 1 O A HOH 215 ? ? O A HOH 236 ? ? 1.73 3 1 O A HOH 227 ? ? O A HOH 240 ? ? 1.92 4 1 O A HOH 210 ? ? O A HOH 234 ? ? 1.96 5 1 O A HOH 205 ? ? O A HOH 221 ? ? 2.10 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 234 ? ? 1_555 O A HOH 242 ? ? 8_444 1.96 2 1 O A HOH 239 ? ? 1_555 O A HOH 241 ? ? 8_444 2.02 3 1 O A HOH 231 ? ? 1_555 O A HOH 241 ? ? 8_444 2.08 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A GTP 101 ? PG ? B GTP 1 PG 2 1 N 1 A GTP 101 ? O1G ? B GTP 1 O1G 3 1 N 1 A GTP 101 ? O2G ? B GTP 1 O2G 4 1 N 1 A GTP 101 ? O3G ? B GTP 1 O3G # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 MG MG MG N N 162 NAD PA P N S 163 NAD O1A O N N 164 NAD O2A O N N 165 NAD O5B O N N 166 NAD C5B C N N 167 NAD C4B C N R 168 NAD O4B O N N 169 NAD C3B C N S 170 NAD O3B O N N 171 NAD C2B C N R 172 NAD O2B O N N 173 NAD C1B C N R 174 NAD N9A N Y N 175 NAD C8A C Y N 176 NAD N7A N Y N 177 NAD C5A C Y N 178 NAD C6A C Y N 179 NAD N6A N N N 180 NAD N1A N Y N 181 NAD C2A C Y N 182 NAD N3A N Y N 183 NAD C4A C Y N 184 NAD O3 O N N 185 NAD PN P N N 186 NAD O1N O N N 187 NAD O2N O N N 188 NAD O5D O N N 189 NAD C5D C N N 190 NAD C4D C N R 191 NAD O4D O N N 192 NAD C3D C N S 193 NAD O3D O N N 194 NAD C2D C N R 195 NAD O2D O N N 196 NAD C1D C N R 197 NAD N1N N Y N 198 NAD C2N C Y N 199 NAD C3N C Y N 200 NAD C7N C N N 201 NAD O7N O N N 202 NAD N7N N N N 203 NAD C4N C Y N 204 NAD C5N C Y N 205 NAD C6N C Y N 206 NAD HOA2 H N N 207 NAD H51A H N N 208 NAD H52A H N N 209 NAD H4B H N N 210 NAD H3B H N N 211 NAD HO3A H N N 212 NAD H2B H N N 213 NAD HO2A H N N 214 NAD H1B H N N 215 NAD H8A H N N 216 NAD H61A H N N 217 NAD H62A H N N 218 NAD H2A H N N 219 NAD H51N H N N 220 NAD H52N H N N 221 NAD H4D H N N 222 NAD H3D H N N 223 NAD HO3N H N N 224 NAD H2D H N N 225 NAD HO2N H N N 226 NAD H1D H N N 227 NAD H2N H N N 228 NAD H71N H N N 229 NAD H72N H N N 230 NAD H4N H N N 231 NAD H5N H N N 232 NAD H6N H N N 233 U OP3 O N N 234 U P P N N 235 U OP1 O N N 236 U OP2 O N N 237 U "O5'" O N N 238 U "C5'" C N N 239 U "C4'" C N R 240 U "O4'" O N N 241 U "C3'" C N S 242 U "O3'" O N N 243 U "C2'" C N R 244 U "O2'" O N N 245 U "C1'" C N R 246 U N1 N N N 247 U C2 C N N 248 U O2 O N N 249 U N3 N N N 250 U C4 C N N 251 U O4 O N N 252 U C5 C N N 253 U C6 C N N 254 U HOP3 H N N 255 U HOP2 H N N 256 U "H5'" H N N 257 U "H5''" H N N 258 U "H4'" H N N 259 U "H3'" H N N 260 U "HO3'" H N N 261 U "H2'" H N N 262 U "HO2'" H N N 263 U "H1'" H N N 264 U H3 H N N 265 U H5 H N N 266 U H6 H N N 267 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 NAD PA O1A doub N N 168 NAD PA O2A sing N N 169 NAD PA O5B sing N N 170 NAD PA O3 sing N N 171 NAD O2A HOA2 sing N N 172 NAD O5B C5B sing N N 173 NAD C5B C4B sing N N 174 NAD C5B H51A sing N N 175 NAD C5B H52A sing N N 176 NAD C4B O4B sing N N 177 NAD C4B C3B sing N N 178 NAD C4B H4B sing N N 179 NAD O4B C1B sing N N 180 NAD C3B O3B sing N N 181 NAD C3B C2B sing N N 182 NAD C3B H3B sing N N 183 NAD O3B HO3A sing N N 184 NAD C2B O2B sing N N 185 NAD C2B C1B sing N N 186 NAD C2B H2B sing N N 187 NAD O2B HO2A sing N N 188 NAD C1B N9A sing N N 189 NAD C1B H1B sing N N 190 NAD N9A C8A sing Y N 191 NAD N9A C4A sing Y N 192 NAD C8A N7A doub Y N 193 NAD C8A H8A sing N N 194 NAD N7A C5A sing Y N 195 NAD C5A C6A sing Y N 196 NAD C5A C4A doub Y N 197 NAD C6A N6A sing N N 198 NAD C6A N1A doub Y N 199 NAD N6A H61A sing N N 200 NAD N6A H62A sing N N 201 NAD N1A C2A sing Y N 202 NAD C2A N3A doub Y N 203 NAD C2A H2A sing N N 204 NAD N3A C4A sing Y N 205 NAD O3 PN sing N N 206 NAD PN O1N doub N N 207 NAD PN O2N sing N N 208 NAD PN O5D sing N N 209 NAD O5D C5D sing N N 210 NAD C5D C4D sing N N 211 NAD C5D H51N sing N N 212 NAD C5D H52N sing N N 213 NAD C4D O4D sing N N 214 NAD C4D C3D sing N N 215 NAD C4D H4D sing N N 216 NAD O4D C1D sing N N 217 NAD C3D O3D sing N N 218 NAD C3D C2D sing N N 219 NAD C3D H3D sing N N 220 NAD O3D HO3N sing N N 221 NAD C2D O2D sing N N 222 NAD C2D C1D sing N N 223 NAD C2D H2D sing N N 224 NAD O2D HO2N sing N N 225 NAD C1D N1N sing N N 226 NAD C1D H1D sing N N 227 NAD N1N C2N sing Y N 228 NAD N1N C6N doub Y N 229 NAD C2N C3N doub Y N 230 NAD C2N H2N sing N N 231 NAD C3N C7N sing N N 232 NAD C3N C4N sing Y N 233 NAD C7N O7N doub N N 234 NAD C7N N7N sing N N 235 NAD N7N H71N sing N N 236 NAD N7N H72N sing N N 237 NAD C4N C5N doub Y N 238 NAD C4N H4N sing N N 239 NAD C5N C6N sing Y N 240 NAD C5N H5N sing N N 241 NAD C6N H6N sing N N 242 U OP3 P sing N N 243 U OP3 HOP3 sing N N 244 U P OP1 doub N N 245 U P OP2 sing N N 246 U P "O5'" sing N N 247 U OP2 HOP2 sing N N 248 U "O5'" "C5'" sing N N 249 U "C5'" "C4'" sing N N 250 U "C5'" "H5'" sing N N 251 U "C5'" "H5''" sing N N 252 U "C4'" "O4'" sing N N 253 U "C4'" "C3'" sing N N 254 U "C4'" "H4'" sing N N 255 U "O4'" "C1'" sing N N 256 U "C3'" "O3'" sing N N 257 U "C3'" "C2'" sing N N 258 U "C3'" "H3'" sing N N 259 U "O3'" "HO3'" sing N N 260 U "C2'" "O2'" sing N N 261 U "C2'" "C1'" sing N N 262 U "C2'" "H2'" sing N N 263 U "O2'" "HO2'" sing N N 264 U "C1'" N1 sing N N 265 U "C1'" "H1'" sing N N 266 U N1 C2 sing N N 267 U N1 C6 sing N N 268 U C2 O2 doub N N 269 U C2 N3 sing N N 270 U N3 C4 sing N N 271 U N3 H3 sing N N 272 U C4 O4 doub N N 273 U C4 C5 sing N N 274 U C5 C6 doub N N 275 U C5 H5 sing N N 276 U C6 H6 sing N N 277 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7D7W 'double helix' 7D7W 'a-form double helix' 7D7W tetraloop 7D7W 'bulge loop' 7D7W 'mismatched base pair' 7D7W 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 50 1_555 -0.714 -0.360 0.403 0.168 -14.171 4.428 1 A_G2:C51_A A 2 ? A 51 ? 19 1 1 A C 2 1_555 A G 49 1_555 -0.350 -0.308 0.344 -0.841 -13.911 -2.392 2 A_C3:G50_A A 3 ? A 50 ? 19 1 1 A U 3 1_555 A A 48 1_555 -0.426 -0.119 0.245 -5.429 -16.828 0.948 3 A_U4:A49_A A 4 ? A 49 ? 20 1 1 A U 4 1_555 A G 47 1_555 2.133 -0.474 0.253 4.740 -12.401 -1.206 4 A_U5:G48_A A 5 ? A 48 ? 28 1 1 A C 5 1_555 A G 46 1_555 0.008 -0.088 0.048 10.209 -21.872 -0.559 5 A_C6:G47_A A 6 ? A 47 ? 19 1 1 A A 6 1_555 A U 45 1_555 0.028 -0.084 0.225 3.587 -10.323 -3.601 6 A_A7:U46_A A 7 ? A 46 ? 20 1 1 A G 15 1_555 A C 44 1_555 0.041 -0.185 -0.115 -16.875 -20.012 0.768 7 A_G16:C45_A A 16 ? A 45 ? 19 1 1 A U 16 1_555 A A 43 1_555 -0.362 -0.214 0.243 -13.548 -12.525 -0.731 8 A_U17:A44_A A 17 ? A 44 ? 20 1 1 A A 17 1_555 A U 42 1_555 0.211 0.007 0.096 -2.089 -8.880 3.363 9 A_A18:U43_A A 18 ? A 43 ? 20 1 1 A G 18 1_555 A C 41 1_555 -0.279 -0.298 -0.002 -1.696 -11.812 4.102 10 A_G19:C42_A A 19 ? A 42 ? 19 1 1 A G 19 1_555 A C 40 1_555 -0.691 -0.261 0.075 -10.485 -18.358 0.250 11 A_G20:C41_A A 20 ? A 41 ? 19 1 1 A U 20 1_555 A A 39 1_555 0.509 -0.262 0.085 -0.433 -18.726 5.418 12 A_U21:A40_A A 21 ? A 40 ? 20 1 1 A G 21 1_555 A C 38 1_555 -0.118 -0.156 0.179 3.143 -1.654 -0.187 13 A_G22:C39_A A 22 ? A 39 ? 19 1 1 A G 22 1_555 A C 36 1_555 -0.335 0.144 0.284 4.629 -2.187 1.817 14 A_G23:C37_A A 23 ? A 37 ? 19 1 1 A G 23 1_555 A A 34 1_555 -0.454 1.869 -0.197 -0.896 -11.537 -17.664 15 A_G24:A35_A A 24 ? A 35 ? 8 1 1 A G 24 1_555 A C 33 1_555 -0.437 -0.186 0.424 3.474 -16.221 -2.357 16 A_G25:C34_A A 25 ? A 34 ? 19 1 1 A A 25 1_555 A U 32 1_555 0.170 -0.114 0.086 7.387 -22.273 2.243 17 A_A26:U33_A A 26 ? A 33 ? 20 1 1 A C 26 1_555 A G 31 1_555 0.366 -0.110 -0.094 6.860 -11.811 4.107 18 A_C27:G32_A A 27 ? A 32 ? 19 1 1 A G 27 1_555 A A 30 1_555 7.013 -5.054 0.408 19.714 -2.788 -17.104 19 A_G28:A31_A A 28 ? A 31 ? 11 10 1 A C 12 1_555 A G 37 1_555 0.226 -0.182 -0.082 10.046 -5.207 -0.164 20 A_C13:G38_A A 13 ? A 38 ? 19 1 1 A C 13 1_555 A G 35 1_555 0.395 -0.105 -0.110 -0.105 -5.421 1.061 21 A_C14:G36_A A 14 ? A 36 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 50 1_555 A C 2 1_555 A G 49 1_555 -0.741 -1.722 3.175 -2.286 3.006 33.685 -3.416 0.921 3.057 5.167 3.929 33.890 1 AA_G2C3:G50C51_AA A 2 ? A 51 ? A 3 ? A 50 ? 1 A C 2 1_555 A G 49 1_555 A U 3 1_555 A A 48 1_555 -0.036 -1.481 3.376 -0.777 5.488 32.031 -3.602 -0.071 3.086 9.854 1.394 32.495 2 AA_C3U4:A49G50_AA A 3 ? A 50 ? A 4 ? A 49 ? 1 A U 3 1_555 A A 48 1_555 A U 4 1_555 A G 47 1_555 -0.035 -0.938 3.021 -0.272 1.209 42.567 -1.403 0.023 2.995 1.665 0.374 42.584 3 AA_U4U5:G48A49_AA A 4 ? A 49 ? A 5 ? A 48 ? 1 A U 4 1_555 A G 47 1_555 A C 5 1_555 A G 46 1_555 0.114 -2.605 2.761 2.806 8.683 18.913 -9.639 0.491 1.439 24.650 -7.966 20.981 4 AA_U5C6:G47G48_AA A 5 ? A 48 ? A 6 ? A 47 ? 1 A C 5 1_555 A G 46 1_555 A A 6 1_555 A U 45 1_555 -0.889 -1.194 3.246 -2.182 15.695 37.539 -3.348 1.053 2.610 23.167 3.220 40.636 5 AA_C6A7:U46G47_AA A 6 ? A 47 ? A 7 ? A 46 ? 1 A A 6 1_555 A U 45 1_555 A G 15 1_555 A C 44 1_555 0.516 -2.459 3.695 5.798 11.462 34.579 -5.496 -0.007 2.814 18.511 -9.364 36.819 6 AA_A7G16:C45U46_AA A 7 ? A 46 ? A 16 ? A 45 ? 1 A G 15 1_555 A C 44 1_555 A U 16 1_555 A A 43 1_555 -0.724 -1.852 3.153 -3.065 0.966 30.743 -3.656 0.784 3.150 1.815 5.762 30.906 7 AA_G16U17:A44C45_AA A 16 ? A 45 ? A 17 ? A 44 ? 1 A U 16 1_555 A A 43 1_555 A A 17 1_555 A U 42 1_555 0.323 -1.255 2.969 1.976 6.713 33.180 -3.096 -0.277 2.686 11.595 -3.413 33.889 8 AA_U17A18:U43A44_AA A 17 ? A 44 ? A 18 ? A 43 ? 1 A A 17 1_555 A U 42 1_555 A G 18 1_555 A C 41 1_555 0.563 -1.635 3.251 1.249 5.385 25.955 -4.911 -0.915 2.882 11.818 -2.741 26.527 9 AA_A18G19:C42U43_AA A 18 ? A 43 ? A 19 ? A 42 ? 1 A G 18 1_555 A C 41 1_555 A G 19 1_555 A C 40 1_555 0.428 -2.121 3.348 2.325 6.722 29.962 -5.256 -0.371 2.841 12.776 -4.418 30.776 10 AA_G19G20:C41C42_AA A 19 ? A 42 ? A 20 ? A 41 ? 1 A G 19 1_555 A C 40 1_555 A U 20 1_555 A A 39 1_555 -0.206 -1.411 3.112 -0.407 3.526 33.342 -2.986 0.295 2.953 6.124 0.708 33.525 11 AA_G20U21:A40C41_AA A 20 ? A 41 ? A 21 ? A 40 ? 1 A U 20 1_555 A A 39 1_555 A G 21 1_555 A C 38 1_555 -0.099 -1.450 3.057 -1.210 8.805 28.754 -4.367 -0.025 2.514 17.218 2.367 30.068 12 AA_U21G22:C39A40_AA A 21 ? A 40 ? A 22 ? A 39 ? 1 A G 21 1_555 A C 38 1_555 A G 22 1_555 A C 36 1_555 2.347 -1.431 3.094 1.558 5.584 42.449 -2.478 -3.069 2.972 7.669 -2.140 42.825 13 AA_G22G23:C37C39_AA A 22 ? A 39 ? A 23 ? A 37 ? 1 A G 22 1_555 A C 36 1_555 A G 23 1_555 A A 34 1_555 -0.543 -4.284 3.283 1.336 3.714 25.683 -10.457 1.541 2.616 8.293 -2.983 25.980 14 AA_G23G24:A35C37_AA A 23 ? A 37 ? A 24 ? A 35 ? 1 A G 23 1_555 A A 34 1_555 A G 24 1_555 A C 33 1_555 0.537 -1.279 3.091 -9.139 6.403 33.586 -2.949 -2.087 2.583 10.719 15.300 35.340 15 AA_G24G25:C34A35_AA A 24 ? A 35 ? A 25 ? A 34 ? 1 A G 24 1_555 A C 33 1_555 A A 25 1_555 A U 32 1_555 0.144 -0.879 3.238 1.512 0.869 39.216 -1.411 -0.037 3.222 1.294 -2.252 39.253 16 AA_G25A26:U33C34_AA A 25 ? A 34 ? A 26 ? A 33 ? 1 A A 25 1_555 A U 32 1_555 A C 26 1_555 A G 31 1_555 0.508 -1.273 3.340 1.352 3.754 33.995 -2.757 -0.650 3.202 6.393 -2.302 34.222 17 AA_A26C27:G32U33_AA A 26 ? A 33 ? A 27 ? A 32 ? 1 A C 26 1_555 A G 31 1_555 A G 27 1_555 A A 30 1_555 -2.506 -0.890 3.087 -2.364 7.639 48.672 -1.604 2.838 3.034 9.197 2.846 49.285 18 AA_C27G28:A31G32_AA A 27 ? A 32 ? A 28 ? A 31 ? 1 A C 12 1_555 A G 37 1_555 A C 13 1_555 A G 35 1_555 2.095 -1.569 3.412 2.308 5.010 51.963 -2.126 -2.221 3.342 5.700 -2.625 52.235 19 AA_C13C14:G36G38_AA A 13 ? A 38 ? A 14 ? A 36 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 MG ? ? MG ? ? 'SUBJECT OF INVESTIGATION' ? 2 NAD ? ? NAD ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-TRIPHOSPHATE" GTP 3 NICOTINAMIDE-ADENINE-DINUCLEOTIDE NAD 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7D7V _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #