data_7D81 # _entry.id 7D81 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7D81 pdb_00007d81 10.2210/pdb7d81/pdb WWPDB D_1300018916 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7D81 _pdbx_database_status.recvd_initial_deposition_date 2020-10-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, H.' 1 0000-0001-7436-5895 'Ren, A.M.' 2 0000-0002-5420-4899 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 48 _citation.language ? _citation.page_first 12394 _citation.page_last 12406 _citation.title 'Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaa1029 _citation.pdbx_database_id_PubMed 33170270 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, H.' 1 ? primary 'Egger, M.' 2 ? primary 'Xu, X.' 3 ? primary 'Flemmich, L.' 4 ? primary 'Krasheninina, O.' 5 ? primary 'Sun, A.' 6 ? primary 'Micura, R.' 7 ? primary 'Ren, A.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7D81 _cell.details ? _cell.formula_units_Z ? _cell.length_a 76.026 _cell.length_a_esd ? _cell.length_b 76.026 _cell.length_b_esd ? _cell.length_c 50.468 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '832GAAA (50-MER)' 16103.608 1 ? 'C2G, A27G, G49C' ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 3 non-polymer syn NICOTINAMIDE-ADENINE-DINUCLEOTIDE 663.425 1 ? ? ? ? 4 water nat water 18.015 27 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGUUUCAACAUCCCCGUUCGGCGCUCGAAAGAGGUGGCCGGACUGAAGCC _entity_poly.pdbx_seq_one_letter_code_can GGUUUCAACAUCCCCGUUCGGCGCUCGAAAGAGGUGGCCGGACUGAAGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 U n 1 5 U n 1 6 C n 1 7 A n 1 8 A n 1 9 C n 1 10 A n 1 11 U n 1 12 C n 1 13 C n 1 14 C n 1 15 C n 1 16 G n 1 17 U n 1 18 U n 1 19 C n 1 20 G n 1 21 G n 1 22 C n 1 23 G n 1 24 C n 1 25 U n 1 26 C n 1 27 G n 1 28 A n 1 29 A n 1 30 A n 1 31 G n 1 32 A n 1 33 G n 1 34 G n 1 35 U n 1 36 G n 1 37 G n 1 38 C n 1 39 C n 1 40 G n 1 41 G n 1 42 A n 1 43 C n 1 44 U n 1 45 G n 1 46 A n 1 47 A n 1 48 G n 1 49 C n 1 50 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 50 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Acidobacteriaceae bacterium KBS 83' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1267533 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7D81 _struct_ref.pdbx_db_accession 7D81 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7D81 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 50 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7D81 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 50 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 50 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NAD non-polymer . NICOTINAMIDE-ADENINE-DINUCLEOTIDE ? 'C21 H27 N7 O14 P2' 663.425 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7D81 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.61 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 M NaCl 0.1 M CHES pH 9.5, 50% PEG400 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-11-09 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97853 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97853 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7D81 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10115 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 18.900 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.400 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.846 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.083 _reflns.pdbx_Rpim_I_all 0.019 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 191116 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.100 2.180 ? ? ? ? ? ? 995 100.000 ? ? ? ? 1.132 ? ? ? ? ? ? ? ? 16.200 ? 0.438 ? ? 1.167 0.281 ? 1 1 0.875 ? ? 2.180 2.260 ? ? ? ? ? ? 978 100.000 ? ? ? ? 0.858 ? ? ? ? ? ? ? ? 18.500 ? 0.522 ? ? 0.882 0.202 ? 2 1 0.934 ? ? 2.260 2.370 ? ? ? ? ? ? 1004 100.000 ? ? ? ? 0.666 ? ? ? ? ? ? ? ? 19.400 ? 0.458 ? ? 0.683 0.154 ? 3 1 0.967 ? ? 2.370 2.490 ? ? ? ? ? ? 992 100.000 ? ? ? ? 0.460 ? ? ? ? ? ? ? ? 18.200 ? 0.474 ? ? 0.473 0.110 ? 4 1 0.987 ? ? 2.490 2.650 ? ? ? ? ? ? 1006 100.000 ? ? ? ? 0.320 ? ? ? ? ? ? ? ? 20.000 ? 0.512 ? ? 0.328 0.073 ? 5 1 0.990 ? ? 2.650 2.850 ? ? ? ? ? ? 1006 100.000 ? ? ? ? 0.216 ? ? ? ? ? ? ? ? 20.100 ? 0.646 ? ? 0.222 0.049 ? 6 1 0.995 ? ? 2.850 3.140 ? ? ? ? ? ? 1019 100.000 ? ? ? ? 0.119 ? ? ? ? ? ? ? ? 19.500 ? 1.068 ? ? 0.122 0.028 ? 7 1 0.997 ? ? 3.140 3.590 ? ? ? ? ? ? 1007 99.900 ? ? ? ? 0.091 ? ? ? ? ? ? ? ? 19.300 ? 1.466 ? ? 0.093 0.021 ? 8 1 0.998 ? ? 3.590 4.520 ? ? ? ? ? ? 1023 100.000 ? ? ? ? 0.071 ? ? ? ? ? ? ? ? 19.600 ? 1.661 ? ? 0.073 0.017 ? 9 1 0.999 ? ? 4.520 50.000 ? ? ? ? ? ? 1085 99.900 ? ? ? ? 0.046 ? ? ? ? ? ? ? ? 18.000 ? 1.077 ? ? 0.048 0.011 ? 10 1 0.999 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 132.220 _refine.B_iso_mean 68.8862 _refine.B_iso_min 32.980 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7D81 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.1000 _refine.ls_d_res_low 30.3640 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10087 _refine.ls_number_reflns_R_free 535 _refine.ls_number_reflns_R_work 9552 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.8100 _refine.ls_percent_reflns_R_free 5.3000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2259 _refine.ls_R_factor_R_free 0.2507 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2244 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.380 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7D7V _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.9600 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.1000 _refine_hist.d_res_low 30.3640 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 1142 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 50 _refine_hist.pdbx_B_iso_mean_ligand 73.62 _refine_hist.pdbx_B_iso_mean_solvent 52.61 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1068 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.1003 2.3116 . . 146 2327 100.0000 . . . 0.3030 0.0000 0.2541 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3116 2.6459 . . 135 2350 100.0000 . . . 0.3664 0.0000 0.2882 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6459 3.3329 . . 109 2410 100.0000 . . . 0.3294 0.0000 0.2734 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3329 30.3640 . . 145 2465 100.0000 . . . 0.2076 0.0000 0.1935 . . . . . . . . . . . # _struct.entry_id 7D81 _struct.title 'Crystal Structure of the Domain2 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7D81 _struct_keywords.text 'riboswitch, RNA structure, RNA folding, RNA-ligand interactions, RNA crystallography, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 7 OP2 ? ? ? 1_555 B MG . MG ? ? A A 7 A MG 101 1_555 ? ? ? ? ? ? ? 2.135 ? ? metalc2 metalc ? ? A A 8 OP2 ? ? ? 1_555 C MG . MG ? ? A A 8 A MG 102 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc3 metalc ? ? A A 8 OP1 ? ? ? 1_555 D MG . MG ? ? A A 8 A MG 103 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc4 metalc ? ? A C 9 OP2 ? ? ? 1_555 C MG . MG ? ? A C 9 A MG 102 1_555 ? ? ? ? ? ? ? 1.897 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 205 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 218 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 219 1_555 ? ? ? ? ? ? ? 2.782 ? ? metalc8 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 221 1_555 ? ? ? ? ? ? ? 2.214 ? ? metalc9 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 223 1_555 ? ? ? ? ? ? ? 2.234 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 A HOH 210 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 A HOH 211 1_555 ? ? ? ? ? ? ? 2.278 ? ? metalc12 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 A HOH 222 1_555 ? ? ? ? ? ? ? 2.146 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 E NAD . O2A ? ? A MG 103 A NAD 104 1_555 ? ? ? ? ? ? ? 1.925 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 E NAD . O1N ? ? A MG 103 A NAD 104 1_555 ? ? ? ? ? ? ? 1.839 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 103 A HOH 202 1_555 ? ? ? ? ? ? ? 2.202 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 103 A HOH 204 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 103 A HOH 215 1_555 ? ? ? ? ? ? ? 2.151 ? ? hydrog1 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 1 A C 50 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 2 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 2 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 2 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 3 N3 ? ? ? 1_555 A G 48 O6 ? ? A U 3 A G 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A U 3 O2 ? ? ? 1_555 A G 48 N1 ? ? A U 3 A G 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog7 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 47 N1 ? ? A U 4 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 47 N6 ? ? A U 4 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 46 N1 ? ? A U 5 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 46 N6 ? ? A U 5 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 45 N1 ? ? A C 6 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 6 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 45 N2 ? ? A C 6 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 44 N3 ? ? A A 7 A U 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 44 O4 ? ? A A 7 A U 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 16 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 16 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 16 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 42 N1 ? ? A U 17 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 42 N6 ? ? A U 17 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 18 N3 ? ? ? 1_555 A G 41 O6 ? ? A U 18 A G 41 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A U 18 O2 ? ? ? 1_555 A G 41 N1 ? ? A U 18 A G 41 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 40 N1 ? ? A C 19 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 40 O6 ? ? A C 19 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 40 N2 ? ? A C 19 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 20 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 20 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 20 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 23 O6 ? ? ? 1_555 A G 34 N2 ? ? A G 23 A G 34 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog36 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 24 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 24 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 24 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 25 N3 ? ? ? 1_555 A A 32 N1 ? ? A U 25 A A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 25 O4 ? ? ? 1_555 A A 32 N6 ? ? A U 25 A A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 26 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 26 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 26 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 7D81 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.013153 _atom_sites.fract_transf_matrix[1][2] 0.007594 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015188 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019815 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 U 5 5 5 U U A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 U 18 18 18 U U A . n A 1 19 C 19 19 19 C C A . n A 1 20 G 20 20 20 G G A . n A 1 21 G 21 21 21 G G A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 C 24 24 24 C C A . n A 1 25 U 25 25 25 U U A . n A 1 26 C 26 26 26 C C A . n A 1 27 G 27 27 27 G G A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 A 30 30 30 A A A . n A 1 31 G 31 31 31 G G A . n A 1 32 A 32 32 32 A A A . n A 1 33 G 33 33 33 G G A . n A 1 34 G 34 34 34 G G A . n A 1 35 U 35 35 35 U U A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 C 38 38 38 C C A . n A 1 39 C 39 39 39 C C A . n A 1 40 G 40 40 40 G G A . n A 1 41 G 41 41 41 G G A . n A 1 42 A 42 42 42 A A A . n A 1 43 C 43 43 43 C C A . n A 1 44 U 44 44 44 U U A . n A 1 45 G 45 45 45 G G A . n A 1 46 A 46 46 46 A A A . n A 1 47 A 47 47 47 A A A . n A 1 48 G 48 48 48 G G A . n A 1 49 C 49 49 49 C C A . n A 1 50 C 50 50 50 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 3 MG MG A . C 2 MG 1 102 4 MG MG A . D 2 MG 1 103 6 MG MG A . E 3 NAD 1 104 1 NAD NAD A . F 4 HOH 1 201 24 HOH HOH A . F 4 HOH 2 202 39 HOH HOH A . F 4 HOH 3 203 46 HOH HOH A . F 4 HOH 4 204 38 HOH HOH A . F 4 HOH 5 205 9 HOH HOH A . F 4 HOH 6 206 44 HOH HOH A . F 4 HOH 7 207 48 HOH HOH A . F 4 HOH 8 208 41 HOH HOH A . F 4 HOH 9 209 34 HOH HOH A . F 4 HOH 10 210 14 HOH HOH A . F 4 HOH 11 211 13 HOH HOH A . F 4 HOH 12 212 17 HOH HOH A . F 4 HOH 13 213 51 HOH HOH A . F 4 HOH 14 214 52 HOH HOH A . F 4 HOH 15 215 40 HOH HOH A . F 4 HOH 16 216 28 HOH HOH A . F 4 HOH 17 217 50 HOH HOH A . F 4 HOH 18 218 10 HOH HOH A . F 4 HOH 19 219 12 HOH HOH A . F 4 HOH 20 220 36 HOH HOH A . F 4 HOH 21 221 20 HOH HOH A . F 4 HOH 22 222 16 HOH HOH A . F 4 HOH 23 223 8 HOH HOH A . F 4 HOH 24 224 47 HOH HOH A . F 4 HOH 25 225 37 HOH HOH A . F 4 HOH 26 226 45 HOH HOH A . F 4 HOH 27 227 49 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 100 ? 1 MORE -10 ? 1 'SSA (A^2)' 8780 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 7 ? A A 7 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 205 ? 1_555 88.6 ? 2 OP2 ? A A 7 ? A A 7 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 218 ? 1_555 148.0 ? 3 O ? F HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 218 ? 1_555 84.8 ? 4 OP2 ? A A 7 ? A A 7 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 219 ? 1_555 86.9 ? 5 O ? F HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 219 ? 1_555 128.4 ? 6 O ? F HOH . ? A HOH 218 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 219 ? 1_555 121.3 ? 7 OP2 ? A A 7 ? A A 7 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 221 ? 1_555 84.2 ? 8 O ? F HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 221 ? 1_555 156.8 ? 9 O ? F HOH . ? A HOH 218 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 221 ? 1_555 89.7 ? 10 O ? F HOH . ? A HOH 219 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 221 ? 1_555 73.3 ? 11 OP2 ? A A 7 ? A A 7 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 223 ? 1_555 86.2 ? 12 O ? F HOH . ? A HOH 205 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 223 ? 1_555 74.9 ? 13 O ? F HOH . ? A HOH 218 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 223 ? 1_555 61.9 ? 14 O ? F HOH . ? A HOH 219 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 223 ? 1_555 155.6 ? 15 O ? F HOH . ? A HOH 221 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 223 ? 1_555 82.7 ? 16 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 OP2 ? A C 9 ? A C 9 ? 1_555 97.7 ? 17 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 210 ? 1_555 79.6 ? 18 OP2 ? A C 9 ? A C 9 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 210 ? 1_555 82.6 ? 19 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 211 ? 1_555 85.3 ? 20 OP2 ? A C 9 ? A C 9 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 211 ? 1_555 174.3 ? 21 O ? F HOH . ? A HOH 210 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 211 ? 1_555 93.2 ? 22 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 222 ? 1_555 163.9 ? 23 OP2 ? A C 9 ? A C 9 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 222 ? 1_555 97.7 ? 24 O ? F HOH . ? A HOH 210 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 222 ? 1_555 98.1 ? 25 O ? F HOH . ? A HOH 211 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? F HOH . ? A HOH 222 ? 1_555 79.0 ? 26 OP1 ? A A 8 ? A A 8 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O2A ? E NAD . ? A NAD 104 ? 1_555 94.1 ? 27 OP1 ? A A 8 ? A A 8 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O1N ? E NAD . ? A NAD 104 ? 1_555 101.3 ? 28 O2A ? E NAD . ? A NAD 104 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O1N ? E NAD . ? A NAD 104 ? 1_555 90.4 ? 29 OP1 ? A A 8 ? A A 8 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 202 ? 1_555 86.5 ? 30 O2A ? E NAD . ? A NAD 104 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 202 ? 1_555 81.6 ? 31 O1N ? E NAD . ? A NAD 104 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 202 ? 1_555 169.3 ? 32 OP1 ? A A 8 ? A A 8 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 204 ? 1_555 86.8 ? 33 O2A ? E NAD . ? A NAD 104 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 204 ? 1_555 170.8 ? 34 O1N ? E NAD . ? A NAD 104 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 204 ? 1_555 98.4 ? 35 O ? F HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 204 ? 1_555 89.3 ? 36 OP1 ? A A 8 ? A A 8 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 215 ? 1_555 169.4 ? 37 O2A ? E NAD . ? A NAD 104 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 215 ? 1_555 86.0 ? 38 O1N ? E NAD . ? A NAD 104 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 215 ? 1_555 89.3 ? 39 O ? F HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 215 ? 1_555 83.0 ? 40 O ? F HOH . ? A HOH 204 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 215 ? 1_555 91.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-11-25 2 'Structure model' 1 1 2020-12-02 3 'Structure model' 1 2 2020-12-23 4 'Structure model' 1 3 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_citation.journal_volume' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 7D81 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 6 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O2D _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 NAD _pdbx_validate_symm_contact.auth_seq_id_2 104 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_554 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A C 43 ? ? N1 A C 43 ? ? C2 A C 43 ? ? 117.49 120.30 -2.81 0.40 N 2 1 C5 A C 43 ? ? C6 A C 43 ? ? N1 A C 43 ? ? 124.89 121.00 3.89 0.50 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 NAD PA P N S 115 NAD O1A O N N 116 NAD O2A O N N 117 NAD O5B O N N 118 NAD C5B C N N 119 NAD C4B C N R 120 NAD O4B O N N 121 NAD C3B C N S 122 NAD O3B O N N 123 NAD C2B C N R 124 NAD O2B O N N 125 NAD C1B C N R 126 NAD N9A N Y N 127 NAD C8A C Y N 128 NAD N7A N Y N 129 NAD C5A C Y N 130 NAD C6A C Y N 131 NAD N6A N N N 132 NAD N1A N Y N 133 NAD C2A C Y N 134 NAD N3A N Y N 135 NAD C4A C Y N 136 NAD O3 O N N 137 NAD PN P N N 138 NAD O1N O N N 139 NAD O2N O N N 140 NAD O5D O N N 141 NAD C5D C N N 142 NAD C4D C N R 143 NAD O4D O N N 144 NAD C3D C N S 145 NAD O3D O N N 146 NAD C2D C N R 147 NAD O2D O N N 148 NAD C1D C N R 149 NAD N1N N Y N 150 NAD C2N C Y N 151 NAD C3N C Y N 152 NAD C7N C N N 153 NAD O7N O N N 154 NAD N7N N N N 155 NAD C4N C Y N 156 NAD C5N C Y N 157 NAD C6N C Y N 158 NAD HOA2 H N N 159 NAD H51A H N N 160 NAD H52A H N N 161 NAD H4B H N N 162 NAD H3B H N N 163 NAD HO3A H N N 164 NAD H2B H N N 165 NAD HO2A H N N 166 NAD H1B H N N 167 NAD H8A H N N 168 NAD H61A H N N 169 NAD H62A H N N 170 NAD H2A H N N 171 NAD H51N H N N 172 NAD H52N H N N 173 NAD H4D H N N 174 NAD H3D H N N 175 NAD HO3N H N N 176 NAD H2D H N N 177 NAD HO2N H N N 178 NAD H1D H N N 179 NAD H2N H N N 180 NAD H71N H N N 181 NAD H72N H N N 182 NAD H4N H N N 183 NAD H5N H N N 184 NAD H6N H N N 185 U OP3 O N N 186 U P P N N 187 U OP1 O N N 188 U OP2 O N N 189 U "O5'" O N N 190 U "C5'" C N N 191 U "C4'" C N R 192 U "O4'" O N N 193 U "C3'" C N S 194 U "O3'" O N N 195 U "C2'" C N R 196 U "O2'" O N N 197 U "C1'" C N R 198 U N1 N N N 199 U C2 C N N 200 U O2 O N N 201 U N3 N N N 202 U C4 C N N 203 U O4 O N N 204 U C5 C N N 205 U C6 C N N 206 U HOP3 H N N 207 U HOP2 H N N 208 U "H5'" H N N 209 U "H5''" H N N 210 U "H4'" H N N 211 U "H3'" H N N 212 U "HO3'" H N N 213 U "H2'" H N N 214 U "HO2'" H N N 215 U "H1'" H N N 216 U H3 H N N 217 U H5 H N N 218 U H6 H N N 219 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 NAD PA O1A doub N N 118 NAD PA O2A sing N N 119 NAD PA O5B sing N N 120 NAD PA O3 sing N N 121 NAD O2A HOA2 sing N N 122 NAD O5B C5B sing N N 123 NAD C5B C4B sing N N 124 NAD C5B H51A sing N N 125 NAD C5B H52A sing N N 126 NAD C4B O4B sing N N 127 NAD C4B C3B sing N N 128 NAD C4B H4B sing N N 129 NAD O4B C1B sing N N 130 NAD C3B O3B sing N N 131 NAD C3B C2B sing N N 132 NAD C3B H3B sing N N 133 NAD O3B HO3A sing N N 134 NAD C2B O2B sing N N 135 NAD C2B C1B sing N N 136 NAD C2B H2B sing N N 137 NAD O2B HO2A sing N N 138 NAD C1B N9A sing N N 139 NAD C1B H1B sing N N 140 NAD N9A C8A sing Y N 141 NAD N9A C4A sing Y N 142 NAD C8A N7A doub Y N 143 NAD C8A H8A sing N N 144 NAD N7A C5A sing Y N 145 NAD C5A C6A sing Y N 146 NAD C5A C4A doub Y N 147 NAD C6A N6A sing N N 148 NAD C6A N1A doub Y N 149 NAD N6A H61A sing N N 150 NAD N6A H62A sing N N 151 NAD N1A C2A sing Y N 152 NAD C2A N3A doub Y N 153 NAD C2A H2A sing N N 154 NAD N3A C4A sing Y N 155 NAD O3 PN sing N N 156 NAD PN O1N doub N N 157 NAD PN O2N sing N N 158 NAD PN O5D sing N N 159 NAD O5D C5D sing N N 160 NAD C5D C4D sing N N 161 NAD C5D H51N sing N N 162 NAD C5D H52N sing N N 163 NAD C4D O4D sing N N 164 NAD C4D C3D sing N N 165 NAD C4D H4D sing N N 166 NAD O4D C1D sing N N 167 NAD C3D O3D sing N N 168 NAD C3D C2D sing N N 169 NAD C3D H3D sing N N 170 NAD O3D HO3N sing N N 171 NAD C2D O2D sing N N 172 NAD C2D C1D sing N N 173 NAD C2D H2D sing N N 174 NAD O2D HO2N sing N N 175 NAD C1D N1N sing N N 176 NAD C1D H1D sing N N 177 NAD N1N C2N sing Y N 178 NAD N1N C6N doub Y N 179 NAD C2N C3N doub Y N 180 NAD C2N H2N sing N N 181 NAD C3N C7N sing N N 182 NAD C3N C4N sing Y N 183 NAD C7N O7N doub N N 184 NAD C7N N7N sing N N 185 NAD N7N H71N sing N N 186 NAD N7N H72N sing N N 187 NAD C4N C5N doub Y N 188 NAD C4N H4N sing N N 189 NAD C5N C6N sing Y N 190 NAD C5N H5N sing N N 191 NAD C6N H6N sing N N 192 U OP3 P sing N N 193 U OP3 HOP3 sing N N 194 U P OP1 doub N N 195 U P OP2 sing N N 196 U P "O5'" sing N N 197 U OP2 HOP2 sing N N 198 U "O5'" "C5'" sing N N 199 U "C5'" "C4'" sing N N 200 U "C5'" "H5'" sing N N 201 U "C5'" "H5''" sing N N 202 U "C4'" "O4'" sing N N 203 U "C4'" "C3'" sing N N 204 U "C4'" "H4'" sing N N 205 U "O4'" "C1'" sing N N 206 U "C3'" "O3'" sing N N 207 U "C3'" "C2'" sing N N 208 U "C3'" "H3'" sing N N 209 U "O3'" "HO3'" sing N N 210 U "C2'" "O2'" sing N N 211 U "C2'" "C1'" sing N N 212 U "C2'" "H2'" sing N N 213 U "O2'" "HO2'" sing N N 214 U "C1'" N1 sing N N 215 U "C1'" "H1'" sing N N 216 U N1 C2 sing N N 217 U N1 C6 sing N N 218 U C2 O2 doub N N 219 U C2 N3 sing N N 220 U N3 C4 sing N N 221 U N3 H3 sing N N 222 U C4 O4 doub N N 223 U C4 C5 sing N N 224 U C5 C6 doub N N 225 U C5 H5 sing N N 226 U C6 H6 sing N N 227 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7D81 'double helix' 7D81 'a-form double helix' 7D81 'hairpin loop' 7D81 'bulge loop' 7D81 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 50 1_555 1.498 0.479 0.609 3.715 19.921 -7.558 1 A_G1:C50_A A 1 ? A 50 ? ? 1 1 A G 2 1_555 A C 49 1_555 -0.568 -0.488 0.116 1.337 -20.527 -8.209 2 A_G2:C49_A A 2 ? A 49 ? 19 1 1 A U 3 1_555 A G 48 1_555 1.728 -0.312 0.196 -3.388 -10.678 7.494 3 A_U3:G48_A A 3 ? A 48 ? 28 1 1 A U 4 1_555 A A 47 1_555 -0.710 0.050 0.119 -6.072 -22.816 6.887 4 A_U4:A47_A A 4 ? A 47 ? 20 1 1 A U 5 1_555 A A 46 1_555 -0.108 -0.223 0.188 0.963 -14.351 -2.646 5 A_U5:A46_A A 5 ? A 46 ? 20 1 1 A C 6 1_555 A G 45 1_555 -0.046 0.007 0.285 4.605 -21.218 0.446 6 A_C6:G45_A A 6 ? A 45 ? 19 1 1 A A 7 1_555 A U 44 1_555 -0.080 -0.001 0.018 5.447 -4.330 0.942 7 A_A7:U44_A A 7 ? A 44 ? 20 1 1 A G 16 1_555 A C 43 1_555 -0.298 -0.377 -0.252 -11.035 -18.239 5.121 8 A_G16:C43_A A 16 ? A 43 ? 19 1 1 A U 17 1_555 A A 42 1_555 -0.050 -0.102 0.137 -14.407 -4.033 -2.568 9 A_U17:A42_A A 17 ? A 42 ? 20 1 1 A U 18 1_555 A G 41 1_555 2.264 -0.637 0.055 -2.820 -4.501 -2.899 10 A_U18:G41_A A 18 ? A 41 ? 28 1 1 A C 19 1_555 A G 40 1_555 0.085 0.026 0.044 5.503 -16.879 4.853 11 A_C19:G40_A A 19 ? A 40 ? 19 1 1 A G 20 1_555 A C 39 1_555 -0.517 -0.277 0.214 8.376 -9.696 -0.645 12 A_G20:C39_A A 20 ? A 39 ? 19 1 1 A G 21 1_555 A C 38 1_555 -0.457 -0.111 0.026 7.564 -8.721 1.217 13 A_G21:C38_A A 21 ? A 38 ? 19 1 1 A C 22 1_555 A G 37 1_555 0.529 -0.061 -0.253 5.941 -10.599 4.959 14 A_C22:G37_A A 22 ? A 37 ? 19 1 1 A G 23 1_555 A G 34 1_555 -4.444 1.558 -1.447 18.960 -1.619 5.552 15 A_G23:G34_A A 23 ? A 34 ? ? ? 1 A C 24 1_555 A G 33 1_555 0.368 -0.007 -0.588 19.393 -16.635 1.728 16 A_C24:G33_A A 24 ? A 33 ? 19 1 1 A U 25 1_555 A A 32 1_555 -0.784 0.093 -0.848 -0.047 -15.141 12.311 17 A_U25:A32_A A 25 ? A 32 ? 20 1 1 A C 26 1_555 A G 31 1_555 0.707 -0.549 -0.794 -9.765 -3.507 4.757 18 A_C26:G31_A A 26 ? A 31 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 50 1_555 A G 2 1_555 A C 49 1_555 0.569 -2.217 3.236 2.250 18.857 35.144 -5.085 -0.617 1.885 28.783 -3.435 39.804 1 AA_G1G2:C49C50_AA A 1 ? A 50 ? A 2 ? A 49 ? 1 A G 2 1_555 A C 49 1_555 A U 3 1_555 A G 48 1_555 0.842 -1.270 3.223 0.798 5.522 44.011 -2.176 -1.044 3.064 7.333 -1.060 44.346 2 AA_G2U3:G48C49_AA A 2 ? A 49 ? A 3 ? A 48 ? 1 A U 3 1_555 A G 48 1_555 A U 4 1_555 A A 47 1_555 -0.461 -1.601 2.958 1.836 17.553 22.704 -6.161 1.237 1.355 38.054 -3.980 28.685 3 AA_U3U4:A47G48_AA A 3 ? A 48 ? A 4 ? A 47 ? 1 A U 4 1_555 A A 47 1_555 A U 5 1_555 A A 46 1_555 -0.342 -0.869 3.109 -3.586 4.977 33.938 -2.192 0.055 2.975 8.440 6.082 34.472 4 AA_U4U5:A46A47_AA A 4 ? A 47 ? A 5 ? A 46 ? 1 A U 5 1_555 A A 46 1_555 A C 6 1_555 A G 45 1_555 1.369 -2.319 3.031 2.378 7.475 27.685 -6.100 -2.301 2.440 15.239 -4.847 28.754 5 AA_U5C6:G45A46_AA A 5 ? A 46 ? A 6 ? A 45 ? 1 A C 6 1_555 A G 45 1_555 A A 7 1_555 A U 44 1_555 -0.953 -1.710 3.036 -1.295 15.407 33.908 -4.383 1.352 2.122 24.876 2.091 37.172 6 AA_C6A7:U44G45_AA A 6 ? A 45 ? A 7 ? A 44 ? 1 A A 7 1_555 A U 44 1_555 A G 16 1_555 A C 43 1_555 0.216 -2.808 3.564 1.164 16.635 29.032 -7.294 -0.208 1.748 30.242 -2.117 33.391 7 AA_A7G16:C43U44_AA A 7 ? A 44 ? A 16 ? A 43 ? 1 A G 16 1_555 A C 43 1_555 A U 17 1_555 A A 42 1_555 -0.975 -2.142 3.225 -3.800 10.262 33.595 -4.916 1.096 2.572 17.196 6.368 35.283 8 AA_G16U17:A42C43_AA A 16 ? A 43 ? A 17 ? A 42 ? 1 A U 17 1_555 A A 42 1_555 A U 18 1_555 A G 41 1_555 0.031 -1.540 3.061 1.777 1.022 37.315 -2.529 0.169 3.018 1.596 -2.774 37.369 9 AA_U17U18:G41A42_AA A 17 ? A 42 ? A 18 ? A 41 ? 1 A U 18 1_555 A G 41 1_555 A C 19 1_555 A G 40 1_555 0.319 -1.939 2.746 5.124 11.665 25.036 -5.992 0.216 1.720 24.951 -10.961 28.046 10 AA_U18C19:G40G41_AA A 18 ? A 41 ? A 19 ? A 40 ? 1 A C 19 1_555 A G 40 1_555 A G 20 1_555 A C 39 1_555 -0.629 -1.457 3.081 -2.862 15.469 26.179 -5.355 0.719 1.986 30.860 5.709 30.471 11 AA_C19G20:C39G40_AA A 19 ? A 40 ? A 20 ? A 39 ? 1 A G 20 1_555 A C 39 1_555 A G 21 1_555 A C 38 1_555 0.238 -1.211 3.275 1.304 12.071 31.304 -3.962 -0.212 2.648 21.389 -2.311 33.521 12 AA_G20G21:C38C39_AA A 20 ? A 39 ? A 21 ? A 38 ? 1 A G 21 1_555 A C 38 1_555 A C 22 1_555 A G 37 1_555 0.935 -1.599 3.263 4.079 8.409 36.496 -3.528 -0.940 2.920 13.163 -6.385 37.635 13 AA_G21C22:G37C38_AA A 21 ? A 38 ? A 22 ? A 37 ? 1 A C 22 1_555 A G 37 1_555 A G 23 1_555 A G 34 1_555 3.695 -2.379 3.895 -12.272 4.751 37.273 -4.072 -6.889 2.303 7.166 18.508 39.450 14 AA_C22G23:G34G37_AA A 22 ? A 37 ? A 23 ? A 34 ? 1 A G 23 1_555 A G 34 1_555 A C 24 1_555 A G 33 1_555 -0.848 -0.537 3.317 -11.793 16.116 48.450 -1.709 0.160 3.119 18.741 13.714 52.173 15 AA_G23C24:G33G34_AA A 23 ? A 34 ? A 24 ? A 33 ? 1 A C 24 1_555 A G 33 1_555 A U 25 1_555 A A 32 1_555 0.081 -1.665 3.584 3.696 16.680 26.713 -6.021 0.508 2.185 32.251 -7.145 31.625 16 AA_C24U25:A32G33_AA A 24 ? A 33 ? A 25 ? A 32 ? 1 A U 25 1_555 A A 32 1_555 A C 26 1_555 A G 31 1_555 -0.317 -0.834 3.687 -3.455 13.693 38.753 -2.808 0.042 3.239 19.851 5.009 41.153 17 AA_U25C26:G31A32_AA A 25 ? A 32 ? A 26 ? A 31 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 MG ? ? MG ? ? 'SUBJECT OF INVESTIGATION' ? 2 NAD ? ? NAD ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 NICOTINAMIDE-ADENINE-DINUCLEOTIDE NAD 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7D7V _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #