data_7DDA # _entry.id 7DDA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.343 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 7DDA WWPDB D_1300018772 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7DDA _pdbx_database_status.recvd_initial_deposition_date 2020-10-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Somsoros, W.' 1 0000-0002-8096-3522 'Sangawa, T.' 2 ? 'Takebe, K.' 3 0000-0002-1611-1042 'Attarataya, J.' 4 0000-0003-3708-4458 'Suzuki, M.' 5 0000-0001-7071-5093 'Khunrae, P.' 6 0000-0001-6257-1835 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Gen.Virol. _citation.journal_id_ASTM JGVIAY _citation.journal_id_CSD 2058 _citation.journal_id_ISSN 1465-2099 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 102 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Crystal structure of the C-terminal domain of envelope protein VP37 from white spot syndrome virus reveals sulphate binding sites responsible for heparin binding. ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1099/jgv.0.001611 _citation.pdbx_database_id_PubMed 34106826 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Somsoros, W.' 1 ? primary 'Sangawa, T.' 2 ? primary 'Takebe, K.' 3 ? primary 'Attarataya, J.' 4 ? primary 'Wongprasert, K.' 5 ? primary 'Senapin, S.' 6 ? primary 'Rattanarojpong, T.' 7 ? primary 'Suzuki, M.' 8 ? primary 'Khunrae, P.' 9 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7DDA _cell.details ? _cell.formula_units_Z ? _cell.length_a 89.382 _cell.length_a_esd ? _cell.length_b 89.382 _cell.length_b_esd ? _cell.length_c 99.046 _cell.length_c_esd ? _cell.volume 685279.451 _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall 'P 6c 2c' _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Envelope protein' 18984.098 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 13 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Envelope protein VP37' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ADFLLDRMTPVSEEDIEGFAASTFKEVSDSKTATVIVKADCETGDIDEVYNLAPSFGVTQEIKIYRSNNSSELDNVADSF HIYKISATDSDSGNTKKLLYGLRNKKAGYTCLCRIFAEIESDGIMANTNIGVAENNRDEIDENEEGKYGFLIPKQPAGAK LIIYFFLNCWT ; _entity_poly.pdbx_seq_one_letter_code_can ;ADFLLDRMTPVSEEDIEGFAASTFKEVSDSKTATVIVKADCETGDIDEVYNLAPSFGVTQEIKIYRSNNSSELDNVADSF HIYKISATDSDSGNTKKLLYGLRNKKAGYTCLCRIFAEIESDGIMANTNIGVAENNRDEIDENEEGKYGFLIPKQPAGAK LIIYFFLNCWT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 PHE n 1 4 LEU n 1 5 LEU n 1 6 ASP n 1 7 ARG n 1 8 MET n 1 9 THR n 1 10 PRO n 1 11 VAL n 1 12 SER n 1 13 GLU n 1 14 GLU n 1 15 ASP n 1 16 ILE n 1 17 GLU n 1 18 GLY n 1 19 PHE n 1 20 ALA n 1 21 ALA n 1 22 SER n 1 23 THR n 1 24 PHE n 1 25 LYS n 1 26 GLU n 1 27 VAL n 1 28 SER n 1 29 ASP n 1 30 SER n 1 31 LYS n 1 32 THR n 1 33 ALA n 1 34 THR n 1 35 VAL n 1 36 ILE n 1 37 VAL n 1 38 LYS n 1 39 ALA n 1 40 ASP n 1 41 CYS n 1 42 GLU n 1 43 THR n 1 44 GLY n 1 45 ASP n 1 46 ILE n 1 47 ASP n 1 48 GLU n 1 49 VAL n 1 50 TYR n 1 51 ASN n 1 52 LEU n 1 53 ALA n 1 54 PRO n 1 55 SER n 1 56 PHE n 1 57 GLY n 1 58 VAL n 1 59 THR n 1 60 GLN n 1 61 GLU n 1 62 ILE n 1 63 LYS n 1 64 ILE n 1 65 TYR n 1 66 ARG n 1 67 SER n 1 68 ASN n 1 69 ASN n 1 70 SER n 1 71 SER n 1 72 GLU n 1 73 LEU n 1 74 ASP n 1 75 ASN n 1 76 VAL n 1 77 ALA n 1 78 ASP n 1 79 SER n 1 80 PHE n 1 81 HIS n 1 82 ILE n 1 83 TYR n 1 84 LYS n 1 85 ILE n 1 86 SER n 1 87 ALA n 1 88 THR n 1 89 ASP n 1 90 SER n 1 91 ASP n 1 92 SER n 1 93 GLY n 1 94 ASN n 1 95 THR n 1 96 LYS n 1 97 LYS n 1 98 LEU n 1 99 LEU n 1 100 TYR n 1 101 GLY n 1 102 LEU n 1 103 ARG n 1 104 ASN n 1 105 LYS n 1 106 LYS n 1 107 ALA n 1 108 GLY n 1 109 TYR n 1 110 THR n 1 111 CYS n 1 112 LEU n 1 113 CYS n 1 114 ARG n 1 115 ILE n 1 116 PHE n 1 117 ALA n 1 118 GLU n 1 119 ILE n 1 120 GLU n 1 121 SER n 1 122 ASP n 1 123 GLY n 1 124 ILE n 1 125 MET n 1 126 ALA n 1 127 ASN n 1 128 THR n 1 129 ASN n 1 130 ILE n 1 131 GLY n 1 132 VAL n 1 133 ALA n 1 134 GLU n 1 135 ASN n 1 136 ASN n 1 137 ARG n 1 138 ASP n 1 139 GLU n 1 140 ILE n 1 141 ASP n 1 142 GLU n 1 143 ASN n 1 144 GLU n 1 145 GLU n 1 146 GLY n 1 147 LYS n 1 148 TYR n 1 149 GLY n 1 150 PHE n 1 151 LEU n 1 152 ILE n 1 153 PRO n 1 154 LYS n 1 155 GLN n 1 156 PRO n 1 157 ALA n 1 158 GLY n 1 159 ALA n 1 160 LYS n 1 161 LEU n 1 162 ILE n 1 163 ILE n 1 164 TYR n 1 165 PHE n 1 166 PHE n 1 167 LEU n 1 168 ASN n 1 169 CYS n 1 170 TRP n 1 171 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 171 _entity_src_gen.gene_src_common_name WSSV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene VP281 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'White spot syndrome virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 92652 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta 2(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'Plasmid vector' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ;pET15bThio, a pET15b (+) from Novagen which was modified to have thioredoxin and TEV cleavage site encoding sequence inserted upstream of the multiple cloning region ; _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15bThio _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A6ZI34_WSSV _struct_ref.pdbx_db_accession A6ZI34 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADFLLDRMTPVSEEDIEGFAASTFKEVSDSKTATVIVKADCETGDIDEVYNLAPSFGVTQEIKIYRSNNSSELDNVADSF HIYKISATDSDSGNTKKLLYGLRNKKAGYTCLCRIFAEIESDGIMANTNIGVAENNRDEIDENEEGKYGFLIPKQPAGAK LIIYFFLNCWT ; _struct_ref.pdbx_align_begin 111 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7DDA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 171 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A6ZI34 _struct_ref_seq.db_align_beg 111 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 281 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 111 _struct_ref_seq.pdbx_auth_seq_align_end 281 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7DDA _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59.11 _exptl_crystal.description 'Hexagonal shaped crystals' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293.2 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.5 M Ammonium sulfate, 100 mM Bis-Tris pH 6.5, 100 mM NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 293.2K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-03-09 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111) double crystal monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9800 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9800 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 28.51 _reflns.entry_id 7DDA _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.505 _reflns.d_resolution_low 44.691 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8198 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 37.1 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 43.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.086 _reflns.pdbx_Rpim_I_all 0.014 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star 1.000 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.505 _reflns_shell.d_res_low 2.548 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 12.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 410 _reflns_shell.percent_possible_all 100.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.327 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 36.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.331 _reflns_shell.pdbx_Rpim_I_all 0.054 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.994 _reflns_shell.pdbx_CC_star 0.998 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 29.26 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7DDA _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.51 _refine.ls_d_res_low 40.74 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8195 _refine.ls_number_reflns_R_free 820 _refine.ls_number_reflns_R_work 13203 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.04 _refine.ls_percent_reflns_R_free 9.93 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2047 _refine.ls_R_factor_R_free 0.2380 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2012 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details 'the entry contains Friedel pairs in I_Plus/Minus columns' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.8760 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2879 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.51 _refine_hist.d_res_low 40.74 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 969 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 946 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0076 ? 968 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.9125 ? 1307 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0547 ? 146 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0048 ? 167 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 7.2032 ? 129 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.51 2.59 . . 148 824 99.61 . . . 0.2956 . 0.2478 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.59 2.70 . . 115 1017 74.33 . . . 0.3490 . 0.2351 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.70 2.82 . . 154 1373 100.00 . . . 0.2634 . 0.2409 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.82 2.97 . . 155 1374 100.00 . . . 0.2599 . 0.2271 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.97 3.16 . . 152 1368 100.00 . . . 0.2699 . 0.2224 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.16 3.40 . . 147 1378 100.00 . . . 0.2586 . 0.2068 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.40 3.74 . . 138 1227 89.63 . . . 0.2374 . 0.1992 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.74 4.28 . . 142 1336 96.73 . . . 0.1906 . 0.1767 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.28 5.39 . . 152 1365 100.00 . . . 0.1638 . 0.1541 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.40 40.74 . . 152 1388 100.00 . . . 0.2691 . 0.2087 . . . . . . . . . . . # _struct.entry_id 7DDA _struct.title 'Envelope protein VP37 a crystal structure from White Spot Syndrome Virus' _struct.pdbx_descriptor 'Envelope protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7DDA _struct_keywords.text 'Envelope protein, Sulfate binding site, VP281, VP37, White spot syndrome virus (WSSV), VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 111 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 169 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 221 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 279 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.038 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 46 ? LEU A 52 ? ILE A 156 LEU A 162 AA1 2 SER A 30 ? ASP A 40 ? SER A 140 ASP A 150 AA1 3 LYS A 160 ? TRP A 170 ? LYS A 270 TRP A 280 AA1 4 THR A 110 ? GLU A 120 ? THR A 220 GLU A 230 AA2 1 PHE A 80 ? ASP A 89 ? PHE A 190 ASP A 199 AA2 2 THR A 95 ? ASN A 104 ? THR A 205 ASN A 214 AA2 3 GLU A 145 ? PRO A 153 ? GLU A 255 PRO A 263 AA2 4 GLY A 131 ? ASN A 135 ? GLY A 241 ASN A 245 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ASP A 47 ? O ASP A 157 N LYS A 38 ? N LYS A 148 AA1 2 3 N LYS A 31 ? N LYS A 141 O CYS A 169 ? O CYS A 279 AA1 3 4 O TYR A 164 ? O TYR A 274 N PHE A 116 ? N PHE A 226 AA2 1 2 N SER A 86 ? N SER A 196 O LEU A 99 ? O LEU A 209 AA2 2 3 N TYR A 100 ? N TYR A 210 O TYR A 148 ? O TYR A 258 AA2 3 4 O LEU A 151 ? O LEU A 261 N GLY A 131 ? N GLY A 241 # _atom_sites.entry_id 7DDA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.011188 _atom_sites.fract_transf_matrix[1][2] 0.006459 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012919 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010096 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 111 ? ? ? A . n A 1 2 ASP 2 112 ? ? ? A . n A 1 3 PHE 3 113 ? ? ? A . n A 1 4 LEU 4 114 ? ? ? A . n A 1 5 LEU 5 115 ? ? ? A . n A 1 6 ASP 6 116 ? ? ? A . n A 1 7 ARG 7 117 ? ? ? A . n A 1 8 MET 8 118 ? ? ? A . n A 1 9 THR 9 119 ? ? ? A . n A 1 10 PRO 10 120 ? ? ? A . n A 1 11 VAL 11 121 ? ? ? A . n A 1 12 SER 12 122 ? ? ? A . n A 1 13 GLU 13 123 ? ? ? A . n A 1 14 GLU 14 124 ? ? ? A . n A 1 15 ASP 15 125 ? ? ? A . n A 1 16 ILE 16 126 ? ? ? A . n A 1 17 GLU 17 127 ? ? ? A . n A 1 18 GLY 18 128 ? ? ? A . n A 1 19 PHE 19 129 ? ? ? A . n A 1 20 ALA 20 130 ? ? ? A . n A 1 21 ALA 21 131 ? ? ? A . n A 1 22 SER 22 132 ? ? ? A . n A 1 23 THR 23 133 ? ? ? A . n A 1 24 PHE 24 134 ? ? ? A . n A 1 25 LYS 25 135 ? ? ? A . n A 1 26 GLU 26 136 ? ? ? A . n A 1 27 VAL 27 137 ? ? ? A . n A 1 28 SER 28 138 138 SER SER A . n A 1 29 ASP 29 139 139 ASP ASP A . n A 1 30 SER 30 140 140 SER SER A . n A 1 31 LYS 31 141 141 LYS LYS A . n A 1 32 THR 32 142 142 THR THR A . n A 1 33 ALA 33 143 143 ALA ALA A . n A 1 34 THR 34 144 144 THR THR A . n A 1 35 VAL 35 145 145 VAL VAL A . n A 1 36 ILE 36 146 146 ILE ILE A . n A 1 37 VAL 37 147 147 VAL VAL A . n A 1 38 LYS 38 148 148 LYS LYS A . n A 1 39 ALA 39 149 149 ALA ALA A . n A 1 40 ASP 40 150 150 ASP ASP A . n A 1 41 CYS 41 151 151 CYS CYS A . n A 1 42 GLU 42 152 152 GLU GLU A . n A 1 43 THR 43 153 153 THR THR A . n A 1 44 GLY 44 154 154 GLY GLY A . n A 1 45 ASP 45 155 155 ASP ASP A . n A 1 46 ILE 46 156 156 ILE ILE A . n A 1 47 ASP 47 157 157 ASP ASP A . n A 1 48 GLU 48 158 158 GLU GLU A . n A 1 49 VAL 49 159 159 VAL VAL A . n A 1 50 TYR 50 160 160 TYR TYR A . n A 1 51 ASN 51 161 161 ASN ASN A . n A 1 52 LEU 52 162 162 LEU LEU A . n A 1 53 ALA 53 163 163 ALA ALA A . n A 1 54 PRO 54 164 ? ? ? A . n A 1 55 SER 55 165 ? ? ? A . n A 1 56 PHE 56 166 ? ? ? A . n A 1 57 GLY 57 167 ? ? ? A . n A 1 58 VAL 58 168 ? ? ? A . n A 1 59 THR 59 169 ? ? ? A . n A 1 60 GLN 60 170 ? ? ? A . n A 1 61 GLU 61 171 ? ? ? A . n A 1 62 ILE 62 172 ? ? ? A . n A 1 63 LYS 63 173 ? ? ? A . n A 1 64 ILE 64 174 ? ? ? A . n A 1 65 TYR 65 175 ? ? ? A . n A 1 66 ARG 66 176 ? ? ? A . n A 1 67 SER 67 177 ? ? ? A . n A 1 68 ASN 68 178 ? ? ? A . n A 1 69 ASN 69 179 ? ? ? A . n A 1 70 SER 70 180 ? ? ? A . n A 1 71 SER 71 181 ? ? ? A . n A 1 72 GLU 72 182 ? ? ? A . n A 1 73 LEU 73 183 ? ? ? A . n A 1 74 ASP 74 184 ? ? ? A . n A 1 75 ASN 75 185 ? ? ? A . n A 1 76 VAL 76 186 186 VAL VAL A . n A 1 77 ALA 77 187 187 ALA ALA A . n A 1 78 ASP 78 188 188 ASP ASP A . n A 1 79 SER 79 189 189 SER SER A . n A 1 80 PHE 80 190 190 PHE PHE A . n A 1 81 HIS 81 191 191 HIS HIS A . n A 1 82 ILE 82 192 192 ILE ILE A . n A 1 83 TYR 83 193 193 TYR TYR A . n A 1 84 LYS 84 194 194 LYS LYS A . n A 1 85 ILE 85 195 195 ILE ILE A . n A 1 86 SER 86 196 196 SER SER A . n A 1 87 ALA 87 197 197 ALA ALA A . n A 1 88 THR 88 198 198 THR THR A . n A 1 89 ASP 89 199 199 ASP ASP A . n A 1 90 SER 90 200 200 SER SER A . n A 1 91 ASP 91 201 201 ASP ASP A . n A 1 92 SER 92 202 202 SER SER A . n A 1 93 GLY 93 203 203 GLY GLY A . n A 1 94 ASN 94 204 204 ASN ASN A . n A 1 95 THR 95 205 205 THR THR A . n A 1 96 LYS 96 206 206 LYS LYS A . n A 1 97 LYS 97 207 207 LYS LYS A . n A 1 98 LEU 98 208 208 LEU LEU A . n A 1 99 LEU 99 209 209 LEU LEU A . n A 1 100 TYR 100 210 210 TYR TYR A . n A 1 101 GLY 101 211 211 GLY GLY A . n A 1 102 LEU 102 212 212 LEU LEU A . n A 1 103 ARG 103 213 213 ARG ARG A . n A 1 104 ASN 104 214 214 ASN ASN A . n A 1 105 LYS 105 215 215 LYS LYS A . n A 1 106 LYS 106 216 216 LYS LYS A . n A 1 107 ALA 107 217 217 ALA ALA A . n A 1 108 GLY 108 218 218 GLY GLY A . n A 1 109 TYR 109 219 219 TYR TYR A . n A 1 110 THR 110 220 220 THR THR A . n A 1 111 CYS 111 221 221 CYS CYS A . n A 1 112 LEU 112 222 222 LEU LEU A . n A 1 113 CYS 113 223 223 CYS CYS A . n A 1 114 ARG 114 224 224 ARG ARG A . n A 1 115 ILE 115 225 225 ILE ILE A . n A 1 116 PHE 116 226 226 PHE PHE A . n A 1 117 ALA 117 227 227 ALA ALA A . n A 1 118 GLU 118 228 228 GLU GLU A . n A 1 119 ILE 119 229 229 ILE ILE A . n A 1 120 GLU 120 230 230 GLU GLU A . n A 1 121 SER 121 231 231 SER SER A . n A 1 122 ASP 122 232 232 ASP ASP A . n A 1 123 GLY 123 233 233 GLY GLY A . n A 1 124 ILE 124 234 234 ILE ILE A . n A 1 125 MET 125 235 235 MET MET A . n A 1 126 ALA 126 236 236 ALA ALA A . n A 1 127 ASN 127 237 237 ASN ASN A . n A 1 128 THR 128 238 238 THR THR A . n A 1 129 ASN 129 239 239 ASN ASN A . n A 1 130 ILE 130 240 240 ILE ILE A . n A 1 131 GLY 131 241 241 GLY GLY A . n A 1 132 VAL 132 242 242 VAL VAL A . n A 1 133 ALA 133 243 243 ALA ALA A . n A 1 134 GLU 134 244 244 GLU GLU A . n A 1 135 ASN 135 245 245 ASN ASN A . n A 1 136 ASN 136 246 246 ASN ASN A . n A 1 137 ARG 137 247 247 ARG ARG A . n A 1 138 ASP 138 248 248 ASP ASP A . n A 1 139 GLU 139 249 249 GLU GLU A . n A 1 140 ILE 140 250 250 ILE ILE A . n A 1 141 ASP 141 251 251 ASP ASP A . n A 1 142 GLU 142 252 252 GLU GLU A . n A 1 143 ASN 143 253 253 ASN ASN A . n A 1 144 GLU 144 254 254 GLU GLU A . n A 1 145 GLU 145 255 255 GLU GLU A . n A 1 146 GLY 146 256 256 GLY GLY A . n A 1 147 LYS 147 257 257 LYS LYS A . n A 1 148 TYR 148 258 258 TYR TYR A . n A 1 149 GLY 149 259 259 GLY GLY A . n A 1 150 PHE 150 260 260 PHE PHE A . n A 1 151 LEU 151 261 261 LEU LEU A . n A 1 152 ILE 152 262 262 ILE ILE A . n A 1 153 PRO 153 263 263 PRO PRO A . n A 1 154 LYS 154 264 264 LYS LYS A . n A 1 155 GLN 155 265 265 GLN GLN A . n A 1 156 PRO 156 266 266 PRO PRO A . n A 1 157 ALA 157 267 267 ALA ALA A . n A 1 158 GLY 158 268 268 GLY GLY A . n A 1 159 ALA 159 269 269 ALA ALA A . n A 1 160 LYS 160 270 270 LYS LYS A . n A 1 161 LEU 161 271 271 LEU LEU A . n A 1 162 ILE 162 272 272 ILE ILE A . n A 1 163 ILE 163 273 273 ILE ILE A . n A 1 164 TYR 164 274 274 TYR TYR A . n A 1 165 PHE 165 275 275 PHE PHE A . n A 1 166 PHE 166 276 276 PHE PHE A . n A 1 167 LEU 167 277 277 LEU LEU A . n A 1 168 ASN 168 278 278 ASN ASN A . n A 1 169 CYS 169 279 279 CYS CYS A . n A 1 170 TRP 170 280 280 TRP TRP A . n A 1 171 THR 171 281 281 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 301 1 SO4 SO4 A . C 2 SO4 1 302 2 SO4 SO4 A . D 3 HOH 1 401 12 HOH HOH A . D 3 HOH 2 402 10 HOH HOH A . D 3 HOH 3 403 7 HOH HOH A . D 3 HOH 4 404 90 HOH HOH A . D 3 HOH 5 405 4 HOH HOH A . D 3 HOH 6 406 27 HOH HOH A . D 3 HOH 7 407 22 HOH HOH A . D 3 HOH 8 408 6 HOH HOH A . D 3 HOH 9 409 1 HOH HOH A . D 3 HOH 10 410 5 HOH HOH A . D 3 HOH 11 411 8 HOH HOH A . D 3 HOH 12 412 84 HOH HOH A . D 3 HOH 13 413 85 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5260 ? 1 MORE -105 ? 1 'SSA (A^2)' 15780 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 -44.6910000000 0.8660254038 -0.5000000000 0.0000000000 77.4070826411 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5000000000 0.8660254038 0.0000000000 -89.3820000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 412 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2021-06-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.2_3874 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 2 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.8.9.2 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'Jan 31, 2020' 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.4 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.2-3874 6 # _pdbx_entry_details.entry_id 7DDA _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 257 ? ? O4 A SO4 301 ? ? 2.04 2 1 ND1 A HIS 191 ? ? O3 A SO4 302 ? ? 2.11 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 243 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -118.05 _pdbx_validate_torsion.psi -108.50 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 111 ? A ALA 1 2 1 Y 1 A ASP 112 ? A ASP 2 3 1 Y 1 A PHE 113 ? A PHE 3 4 1 Y 1 A LEU 114 ? A LEU 4 5 1 Y 1 A LEU 115 ? A LEU 5 6 1 Y 1 A ASP 116 ? A ASP 6 7 1 Y 1 A ARG 117 ? A ARG 7 8 1 Y 1 A MET 118 ? A MET 8 9 1 Y 1 A THR 119 ? A THR 9 10 1 Y 1 A PRO 120 ? A PRO 10 11 1 Y 1 A VAL 121 ? A VAL 11 12 1 Y 1 A SER 122 ? A SER 12 13 1 Y 1 A GLU 123 ? A GLU 13 14 1 Y 1 A GLU 124 ? A GLU 14 15 1 Y 1 A ASP 125 ? A ASP 15 16 1 Y 1 A ILE 126 ? A ILE 16 17 1 Y 1 A GLU 127 ? A GLU 17 18 1 Y 1 A GLY 128 ? A GLY 18 19 1 Y 1 A PHE 129 ? A PHE 19 20 1 Y 1 A ALA 130 ? A ALA 20 21 1 Y 1 A ALA 131 ? A ALA 21 22 1 Y 1 A SER 132 ? A SER 22 23 1 Y 1 A THR 133 ? A THR 23 24 1 Y 1 A PHE 134 ? A PHE 24 25 1 Y 1 A LYS 135 ? A LYS 25 26 1 Y 1 A GLU 136 ? A GLU 26 27 1 Y 1 A VAL 137 ? A VAL 27 28 1 Y 1 A PRO 164 ? A PRO 54 29 1 Y 1 A SER 165 ? A SER 55 30 1 Y 1 A PHE 166 ? A PHE 56 31 1 Y 1 A GLY 167 ? A GLY 57 32 1 Y 1 A VAL 168 ? A VAL 58 33 1 Y 1 A THR 169 ? A THR 59 34 1 Y 1 A GLN 170 ? A GLN 60 35 1 Y 1 A GLU 171 ? A GLU 61 36 1 Y 1 A ILE 172 ? A ILE 62 37 1 Y 1 A LYS 173 ? A LYS 63 38 1 Y 1 A ILE 174 ? A ILE 64 39 1 Y 1 A TYR 175 ? A TYR 65 40 1 Y 1 A ARG 176 ? A ARG 66 41 1 Y 1 A SER 177 ? A SER 67 42 1 Y 1 A ASN 178 ? A ASN 68 43 1 Y 1 A ASN 179 ? A ASN 69 44 1 Y 1 A SER 180 ? A SER 70 45 1 Y 1 A SER 181 ? A SER 71 46 1 Y 1 A GLU 182 ? A GLU 72 47 1 Y 1 A LEU 183 ? A LEU 73 48 1 Y 1 A ASP 184 ? A ASP 74 49 1 Y 1 A ASN 185 ? A ASN 75 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id SO4 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id SO4 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ;The molecular weight expected from the peak position (14.73 mL) was 143.4 kDa, indicating oligomeric state of VP37 in solution phase. ; # _space_group.name_H-M_alt 'P 63 2 2' _space_group.name_Hall 'P 6c 2c' _space_group.IT_number 182 _space_group.crystal_system hexagonal _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x-y,x,z+1/2 3 y,-x+y,z+1/2 4 -y,x-y,z 5 -x+y,-x,z 6 x-y,-y,-z 7 -x,-x+y,-z 8 -x,-y,z+1/2 9 y,x,-z 10 -y,-x,-z+1/2 11 -x+y,y,-z+1/2 12 x,x-y,-z+1/2 #