data_7JQU # _entry.id 7JQU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7JQU pdb_00007jqu 10.2210/pdb7jqu/pdb WWPDB D_1000251256 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7JQU _pdbx_database_status.recvd_initial_deposition_date 2020-08-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kreutzer, A.G.' 1 0000-0002-9724-6298 'McKnelly, K.J.' 2 0000-0003-0063-6423 'Nowick, J.S.' 3 0000-0002-2273-1029 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 0006-2960 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 61 _citation.language ? _citation.page_first 446 _citation.page_last 454 _citation.title ;Effects of Familial Alzheimer's Disease Mutations on the Assembly of a beta-Hairpin Peptide Derived from A beta 16-36 . ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.1c00664 _citation.pdbx_database_id_PubMed 35213141 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McKnelly, K.J.' 1 ? primary 'Kreutzer, A.G.' 2 ? primary 'Howitz, W.J.' 3 ? primary 'Haduong, K.' 4 ? primary 'Yoo, S.' 5 ? primary 'Hart, C.' 6 ? primary 'Nowick, J.S.' 7 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7JQU _cell.details ? _cell.formula_units_Z ? _cell.length_a 67.341 _cell.length_a_esd ? _cell.length_b 67.341 _cell.length_b_esd ? _cell.length_c 67.341 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 72 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Abeta 16-36 beta-hairpin mimic VAL-ORN-LYS-LEU-VAL-MEA-PHE-ALA-GLN-ORN-ALA-ILE-ILE-GLY-LEU-MET' 1793.286 3 ? ? ? ? 2 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'V(ORN)KLV(MEA)FAQ(ORN)AIIGLM' _entity_poly.pdbx_seq_one_letter_code_can VAKLVFFAQAAIIGLM _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ORN n 1 3 LYS n 1 4 LEU n 1 5 VAL n 1 6 MEA n 1 7 PHE n 1 8 ALA n 1 9 GLN n 1 10 ORN n 1 11 ALA n 1 12 ILE n 1 13 ILE n 1 14 GLY n 1 15 LEU n 1 16 MET n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7JQU _struct_ref.pdbx_db_accession 7JQU _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7JQU A 1 ? 16 ? 7JQU 1 ? 16 ? 1 16 2 1 7JQU B 1 ? 16 ? 7JQU 1 ? 16 ? 1 16 3 1 7JQU C 1 ? 16 ? 7JQU 1 ? 16 ? 1 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MEA 'L-peptide linking' n N-METHYLPHENYLALANINE ? 'C10 H13 N O2' 179.216 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7JQU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'sodium citrate, isopropanol, PEG 4000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 123.15 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-02-15 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Cu anode' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7JQU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.611 _reflns.d_resolution_low 23.81 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3025 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 93.3 _reflns.pdbx_Rmerge_I_obs 0.01217 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.04 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.611 _reflns_shell.d_res_low 2.705 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 179 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.2447 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.658 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 161.050 _refine.B_iso_mean 68.8199 _refine.B_iso_min 21.420 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7JQU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.6110 _refine.ls_d_res_low 23.8090 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3025 _refine.ls_number_reflns_R_free 296 _refine.ls_number_reflns_R_work 2729 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.8000 _refine.ls_percent_reflns_R_free 9.7900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2475 _refine.ls_R_factor_R_free 0.2811 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2432 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5W4H _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.0700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.6110 _refine_hist.d_res_low 23.8090 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 388 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 48 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent 63.68 _refine_hist.pdbx_number_atoms_protein 375 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 381 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.797 ? 501 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.058 ? 63 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 57 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 24.971 ? 249 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.6114 3.2887 . . 143 1363 100.0000 . . . 0.3285 0.0000 0.3029 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2887 23.8090 . . 153 1366 100.0000 . . . 0.2660 0.0000 0.2244 . . . . . . . . . . . # _struct.entry_id 7JQU _struct.title 'Abeta 16-36 beta-hairpin mimic with E22G Arctic mutation' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7JQU _struct_keywords.text ;Alzheimer's disease, amyloid, Abeta, oligomer, familial mutant, DE NOVO PROTEIN ; _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 1 C ? ? ? 1_555 A ORN 2 NE ? ? A VAL 1 A ORN 2 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale2 covale both ? A VAL 1 N ? ? ? 1_555 A MET 16 C ? ? A VAL 1 A MET 16 1_555 ? ? ? ? ? ? ? 1.326 sing ? covale3 covale both ? A ORN 2 C ? ? ? 1_555 A LYS 3 N ? ? A ORN 2 A LYS 3 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale4 covale both ? A VAL 5 C ? ? ? 1_555 A MEA 6 N ? ? A VAL 5 A MEA 6 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? A MEA 6 C ? ? ? 1_555 A PHE 7 N ? ? A MEA 6 A PHE 7 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? A GLN 9 C ? ? ? 1_555 A ORN 10 NE ? ? A GLN 9 A ORN 10 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale7 covale both ? A ORN 10 C ? ? ? 1_555 A ALA 11 N ? ? A ORN 10 A ALA 11 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale8 covale both ? B VAL 1 C ? ? ? 1_555 B ORN 2 NE ? ? B VAL 1 B ORN 2 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale9 covale both ? B VAL 1 N ? ? ? 1_555 B MET 16 C ? ? B VAL 1 B MET 16 1_555 ? ? ? ? ? ? ? 1.325 sing ? covale10 covale both ? B ORN 2 C ? ? ? 1_555 B LYS 3 N ? ? B ORN 2 B LYS 3 1_555 ? ? ? ? ? ? ? 1.371 ? ? covale11 covale both ? B VAL 5 C ? ? ? 1_555 B MEA 6 N ? ? B VAL 5 B MEA 6 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale12 covale both ? B MEA 6 C ? ? ? 1_555 B PHE 7 N ? ? B MEA 6 B PHE 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale13 covale both ? B GLN 9 C ? ? ? 1_555 B ORN 10 NE ? ? B GLN 9 B ORN 10 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale14 covale both ? B ORN 10 C ? ? ? 1_555 B ALA 11 N ? ? B ORN 10 B ALA 11 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale15 covale both ? C VAL 1 C ? ? ? 1_555 C ORN 2 NE ? ? C VAL 1 C ORN 2 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale16 covale both ? C VAL 1 N ? ? ? 1_555 C MET 16 C ? ? C VAL 1 C MET 16 1_555 ? ? ? ? ? ? ? 1.327 sing ? covale17 covale both ? C ORN 2 C ? ? ? 1_555 C LYS 3 N ? ? C ORN 2 C LYS 3 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale18 covale both ? C VAL 5 C ? ? ? 1_555 C MEA 6 N ? ? C VAL 5 C MEA 6 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale19 covale both ? C MEA 6 C ? ? ? 1_555 C PHE 7 N ? ? C MEA 6 C PHE 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale20 covale both ? C GLN 9 C ? ? ? 1_555 C ORN 10 NE ? ? C GLN 9 C ORN 10 1_555 ? ? ? ? ? ? ? 1.377 ? ? covale21 covale both ? C ORN 10 C ? ? ? 1_555 C ALA 11 N ? ? C ORN 10 C ALA 11 1_555 ? ? ? ? ? ? ? 1.371 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 1 3 ? anti-parallel AA1 1 5 ? anti-parallel AA1 3 4 ? anti-parallel AA1 3 5 ? anti-parallel AA1 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 3 ? ALA A 8 ? LYS A 3 ALA A 8 AA1 2 ILE A 12 ? LEU A 15 ? ILE A 12 LEU A 15 AA1 3 LYS B 3 ? ALA B 8 ? LYS B 3 ALA B 8 AA1 4 ILE B 12 ? LEU B 15 ? ILE B 12 LEU B 15 AA1 5 LYS C 3 ? ALA C 8 ? LYS C 3 ALA C 8 AA1 6 ILE C 12 ? LEU C 15 ? ILE C 12 LEU C 15 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 7 ? N PHE A 7 O ILE A 13 ? O ILE A 13 AA1 1 3 N LEU A 4 ? N LEU A 4 O MEA B 6 ? O MEA B 6 AA1 1 5 N MEA A 6 ? N MEA A 6 O LEU C 4 ? O LEU C 4 AA1 3 4 N PHE B 7 ? N PHE B 7 O ILE B 13 ? O ILE B 13 AA1 3 5 N LEU B 4 ? N LEU B 4 O MEA C 6 ? O MEA C 6 AA1 5 6 N VAL C 5 ? N VAL C 5 O LEU C 15 ? O LEU C 15 # _atom_sites.entry_id 7JQU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.014850 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014850 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014850 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 ORN 2 2 2 ORN ORN A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 MEA 6 6 6 MEA MEA A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 ORN 10 10 10 ORN ORN A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 MET 16 16 16 MET MET A . n B 1 1 VAL 1 1 1 VAL VAL B . n B 1 2 ORN 2 2 2 ORN ORN B . n B 1 3 LYS 3 3 3 LYS LYS B . n B 1 4 LEU 4 4 4 LEU LEU B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 MEA 6 6 6 MEA MEA B . n B 1 7 PHE 7 7 7 PHE PHE B . n B 1 8 ALA 8 8 8 ALA ALA B . n B 1 9 GLN 9 9 9 GLN GLN B . n B 1 10 ORN 10 10 10 ORN ORN B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 ILE 12 12 12 ILE ILE B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 MET 16 16 16 MET MET B . n C 1 1 VAL 1 1 1 VAL VAL C . n C 1 2 ORN 2 2 2 ORN ORN C . n C 1 3 LYS 3 3 3 LYS LYS C . n C 1 4 LEU 4 4 4 LEU LEU C . n C 1 5 VAL 5 5 5 VAL VAL C . n C 1 6 MEA 6 6 6 MEA MEA C . n C 1 7 PHE 7 7 7 PHE PHE C . n C 1 8 ALA 8 8 8 ALA ALA C . n C 1 9 GLN 9 9 9 GLN GLN C . n C 1 10 ORN 10 10 10 ORN ORN C . n C 1 11 ALA 11 11 11 ALA ALA C . n C 1 12 ILE 12 12 12 ILE ILE C . n C 1 13 ILE 13 13 13 ILE ILE C . n C 1 14 GLY 14 14 14 GLY GLY C . n C 1 15 LEU 15 15 15 LEU LEU C . n C 1 16 MET 16 16 16 MET MET C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 101 1 HOH HOH A . D 2 HOH 2 102 3 HOH HOH A . D 2 HOH 3 103 6 HOH HOH A . D 2 HOH 4 104 5 HOH HOH A . D 2 HOH 5 105 10 HOH HOH A . D 2 HOH 6 106 12 HOH HOH A . E 2 HOH 1 101 11 HOH HOH B . E 2 HOH 2 102 14 HOH HOH B . F 2 HOH 1 101 13 HOH HOH C . F 2 HOH 2 102 7 HOH HOH C . F 2 HOH 3 103 2 HOH HOH C . F 2 HOH 4 104 9 HOH HOH C . F 2 HOH 5 105 4 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4950 ? 1 MORE -32 ? 1 'SSA (A^2)' 5390 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 13_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 67.3410000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 106 ? D HOH . 2 1 C HOH 104 ? F HOH . 3 1 C HOH 105 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-08 2 'Structure model' 1 1 2022-03-16 3 'Structure model' 1 2 2022-03-30 4 'Structure model' 1 3 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 3 'Structure model' '_citation.title' 14 3 'Structure model' '_citation_author.identifier_ORCID' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 12.4427 19.8837 40.2601 0.7487 ? 0.1511 ? -0.0261 ? 0.7330 ? -0.0521 ? 0.5178 ? 7.1738 ? -3.7410 ? -0.7956 ? 5.3906 ? -0.8867 ? 7.4281 ? -0.4193 ? 0.2483 ? 0.0190 ? 0.9609 ? 0.3992 ? -0.6094 ? 0.0640 ? 0.6784 ? -0.3990 ? 2 'X-RAY DIFFRACTION' ? refined 5.1162 12.7745 33.0653 0.5189 ? -0.0832 ? -0.1170 ? 0.4793 ? 0.0539 ? 0.5734 ? 5.8589 ? -2.0491 ? -6.0827 ? 6.8171 ? 6.0383 ? 10.2287 ? -0.6779 ? 0.5544 ? -0.5247 ? -0.7002 ? 0.5538 ? 0.7392 ? 1.3018 ? -1.6461 ? -0.0415 ? 3 'X-RAY DIFFRACTION' ? refined 13.2618 20.9374 27.6860 0.5735 ? -0.0038 ? 0.0992 ? 0.4983 ? 0.0693 ? 0.5259 ? 10.6434 ? -0.9398 ? -0.8694 ? 9.1551 ? -2.6789 ? 4.0206 ? -0.3100 ? -0.8736 ? 0.5941 ? -0.1775 ? 0.1643 ? 0.6093 ? -1.3402 ? -0.1395 ? -0.1959 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 1 ? ? ? A 16 ? ? ;chain 'A' and (resid 1 through 16 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? B 1 ? ? ? B 16 ? ? ;chain 'B' and (resid 1 through 16 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? C 1 ? ? ? C 16 ? ? ;chain 'C' and (resid 1 through 16 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.11.1_2575 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _pdbx_entry_details.entry_id 7JQU _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 ORN _pdbx_validate_close_contact.auth_seq_id_1 10 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 101 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.96 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 104 ? ? 1_555 O A HOH 104 ? ? 3_556 1.94 2 1 O A HOH 103 ? ? 1_555 O A HOH 104 ? ? 3_556 1.94 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id C _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 105 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.50 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GLN N N N N 14 GLN CA C N S 15 GLN C C N N 16 GLN O O N N 17 GLN CB C N N 18 GLN CG C N N 19 GLN CD C N N 20 GLN OE1 O N N 21 GLN NE2 N N N 22 GLN OXT O N N 23 GLN H H N N 24 GLN H2 H N N 25 GLN HA H N N 26 GLN HB2 H N N 27 GLN HB3 H N N 28 GLN HG2 H N N 29 GLN HG3 H N N 30 GLN HE21 H N N 31 GLN HE22 H N N 32 GLN HXT H N N 33 GLY N N N N 34 GLY CA C N N 35 GLY C C N N 36 GLY O O N N 37 GLY OXT O N N 38 GLY H H N N 39 GLY H2 H N N 40 GLY HA2 H N N 41 GLY HA3 H N N 42 GLY HXT H N N 43 HOH O O N N 44 HOH H1 H N N 45 HOH H2 H N N 46 ILE N N N N 47 ILE CA C N S 48 ILE C C N N 49 ILE O O N N 50 ILE CB C N S 51 ILE CG1 C N N 52 ILE CG2 C N N 53 ILE CD1 C N N 54 ILE OXT O N N 55 ILE H H N N 56 ILE H2 H N N 57 ILE HA H N N 58 ILE HB H N N 59 ILE HG12 H N N 60 ILE HG13 H N N 61 ILE HG21 H N N 62 ILE HG22 H N N 63 ILE HG23 H N N 64 ILE HD11 H N N 65 ILE HD12 H N N 66 ILE HD13 H N N 67 ILE HXT H N N 68 LEU N N N N 69 LEU CA C N S 70 LEU C C N N 71 LEU O O N N 72 LEU CB C N N 73 LEU CG C N N 74 LEU CD1 C N N 75 LEU CD2 C N N 76 LEU OXT O N N 77 LEU H H N N 78 LEU H2 H N N 79 LEU HA H N N 80 LEU HB2 H N N 81 LEU HB3 H N N 82 LEU HG H N N 83 LEU HD11 H N N 84 LEU HD12 H N N 85 LEU HD13 H N N 86 LEU HD21 H N N 87 LEU HD22 H N N 88 LEU HD23 H N N 89 LEU HXT H N N 90 LYS N N N N 91 LYS CA C N S 92 LYS C C N N 93 LYS O O N N 94 LYS CB C N N 95 LYS CG C N N 96 LYS CD C N N 97 LYS CE C N N 98 LYS NZ N N N 99 LYS OXT O N N 100 LYS H H N N 101 LYS H2 H N N 102 LYS HA H N N 103 LYS HB2 H N N 104 LYS HB3 H N N 105 LYS HG2 H N N 106 LYS HG3 H N N 107 LYS HD2 H N N 108 LYS HD3 H N N 109 LYS HE2 H N N 110 LYS HE3 H N N 111 LYS HZ1 H N N 112 LYS HZ2 H N N 113 LYS HZ3 H N N 114 LYS HXT H N N 115 MEA C1 C N N 116 MEA N N N N 117 MEA CA C N S 118 MEA C C N N 119 MEA O O N N 120 MEA CB C N N 121 MEA CG C Y N 122 MEA CD1 C Y N 123 MEA CE1 C Y N 124 MEA CZ C Y N 125 MEA CE2 C Y N 126 MEA CD2 C Y N 127 MEA OXT O N N 128 MEA HC1 H N N 129 MEA HC2 H N N 130 MEA HC3 H N N 131 MEA H H N N 132 MEA HA H N N 133 MEA HB1 H N N 134 MEA HB2 H N N 135 MEA HD1 H N N 136 MEA HE1 H N N 137 MEA HZ H N N 138 MEA HE2 H N N 139 MEA HD2 H N N 140 MEA HXT H N N 141 MET N N N N 142 MET CA C N S 143 MET C C N N 144 MET O O N N 145 MET CB C N N 146 MET CG C N N 147 MET SD S N N 148 MET CE C N N 149 MET OXT O N N 150 MET H H N N 151 MET H2 H N N 152 MET HA H N N 153 MET HB2 H N N 154 MET HB3 H N N 155 MET HG2 H N N 156 MET HG3 H N N 157 MET HE1 H N N 158 MET HE2 H N N 159 MET HE3 H N N 160 MET HXT H N N 161 ORN N N N N 162 ORN CA C N S 163 ORN CB C N N 164 ORN CG C N N 165 ORN CD C N N 166 ORN NE N N N 167 ORN C C N N 168 ORN O O N N 169 ORN OXT O N N 170 ORN H H N N 171 ORN H2 H N N 172 ORN HA H N N 173 ORN HB2 H N N 174 ORN HB3 H N N 175 ORN HG2 H N N 176 ORN HG3 H N N 177 ORN HD2 H N N 178 ORN HD3 H N N 179 ORN HE1 H N N 180 ORN HE2 H N N 181 ORN HXT H N N 182 PHE N N N N 183 PHE CA C N S 184 PHE C C N N 185 PHE O O N N 186 PHE CB C N N 187 PHE CG C Y N 188 PHE CD1 C Y N 189 PHE CD2 C Y N 190 PHE CE1 C Y N 191 PHE CE2 C Y N 192 PHE CZ C Y N 193 PHE OXT O N N 194 PHE H H N N 195 PHE H2 H N N 196 PHE HA H N N 197 PHE HB2 H N N 198 PHE HB3 H N N 199 PHE HD1 H N N 200 PHE HD2 H N N 201 PHE HE1 H N N 202 PHE HE2 H N N 203 PHE HZ H N N 204 PHE HXT H N N 205 VAL N N N N 206 VAL CA C N S 207 VAL C C N N 208 VAL O O N N 209 VAL CB C N N 210 VAL CG1 C N N 211 VAL CG2 C N N 212 VAL OXT O N N 213 VAL H H N N 214 VAL H2 H N N 215 VAL HA H N N 216 VAL HB H N N 217 VAL HG11 H N N 218 VAL HG12 H N N 219 VAL HG13 H N N 220 VAL HG21 H N N 221 VAL HG22 H N N 222 VAL HG23 H N N 223 VAL HXT H N N 224 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GLN N CA sing N N 13 GLN N H sing N N 14 GLN N H2 sing N N 15 GLN CA C sing N N 16 GLN CA CB sing N N 17 GLN CA HA sing N N 18 GLN C O doub N N 19 GLN C OXT sing N N 20 GLN CB CG sing N N 21 GLN CB HB2 sing N N 22 GLN CB HB3 sing N N 23 GLN CG CD sing N N 24 GLN CG HG2 sing N N 25 GLN CG HG3 sing N N 26 GLN CD OE1 doub N N 27 GLN CD NE2 sing N N 28 GLN NE2 HE21 sing N N 29 GLN NE2 HE22 sing N N 30 GLN OXT HXT sing N N 31 GLY N CA sing N N 32 GLY N H sing N N 33 GLY N H2 sing N N 34 GLY CA C sing N N 35 GLY CA HA2 sing N N 36 GLY CA HA3 sing N N 37 GLY C O doub N N 38 GLY C OXT sing N N 39 GLY OXT HXT sing N N 40 HOH O H1 sing N N 41 HOH O H2 sing N N 42 ILE N CA sing N N 43 ILE N H sing N N 44 ILE N H2 sing N N 45 ILE CA C sing N N 46 ILE CA CB sing N N 47 ILE CA HA sing N N 48 ILE C O doub N N 49 ILE C OXT sing N N 50 ILE CB CG1 sing N N 51 ILE CB CG2 sing N N 52 ILE CB HB sing N N 53 ILE CG1 CD1 sing N N 54 ILE CG1 HG12 sing N N 55 ILE CG1 HG13 sing N N 56 ILE CG2 HG21 sing N N 57 ILE CG2 HG22 sing N N 58 ILE CG2 HG23 sing N N 59 ILE CD1 HD11 sing N N 60 ILE CD1 HD12 sing N N 61 ILE CD1 HD13 sing N N 62 ILE OXT HXT sing N N 63 LEU N CA sing N N 64 LEU N H sing N N 65 LEU N H2 sing N N 66 LEU CA C sing N N 67 LEU CA CB sing N N 68 LEU CA HA sing N N 69 LEU C O doub N N 70 LEU C OXT sing N N 71 LEU CB CG sing N N 72 LEU CB HB2 sing N N 73 LEU CB HB3 sing N N 74 LEU CG CD1 sing N N 75 LEU CG CD2 sing N N 76 LEU CG HG sing N N 77 LEU CD1 HD11 sing N N 78 LEU CD1 HD12 sing N N 79 LEU CD1 HD13 sing N N 80 LEU CD2 HD21 sing N N 81 LEU CD2 HD22 sing N N 82 LEU CD2 HD23 sing N N 83 LEU OXT HXT sing N N 84 LYS N CA sing N N 85 LYS N H sing N N 86 LYS N H2 sing N N 87 LYS CA C sing N N 88 LYS CA CB sing N N 89 LYS CA HA sing N N 90 LYS C O doub N N 91 LYS C OXT sing N N 92 LYS CB CG sing N N 93 LYS CB HB2 sing N N 94 LYS CB HB3 sing N N 95 LYS CG CD sing N N 96 LYS CG HG2 sing N N 97 LYS CG HG3 sing N N 98 LYS CD CE sing N N 99 LYS CD HD2 sing N N 100 LYS CD HD3 sing N N 101 LYS CE NZ sing N N 102 LYS CE HE2 sing N N 103 LYS CE HE3 sing N N 104 LYS NZ HZ1 sing N N 105 LYS NZ HZ2 sing N N 106 LYS NZ HZ3 sing N N 107 LYS OXT HXT sing N N 108 MEA C1 N sing N N 109 MEA C1 HC1 sing N N 110 MEA C1 HC2 sing N N 111 MEA C1 HC3 sing N N 112 MEA N CA sing N N 113 MEA N H sing N N 114 MEA CA C sing N N 115 MEA CA CB sing N N 116 MEA CA HA sing N N 117 MEA C O doub N N 118 MEA C OXT sing N N 119 MEA CB CG sing N N 120 MEA CB HB1 sing N N 121 MEA CB HB2 sing N N 122 MEA CG CD1 doub Y N 123 MEA CG CD2 sing Y N 124 MEA CD1 CE1 sing Y N 125 MEA CD1 HD1 sing N N 126 MEA CE1 CZ doub Y N 127 MEA CE1 HE1 sing N N 128 MEA CZ CE2 sing Y N 129 MEA CZ HZ sing N N 130 MEA CE2 CD2 doub Y N 131 MEA CE2 HE2 sing N N 132 MEA CD2 HD2 sing N N 133 MEA OXT HXT sing N N 134 MET N CA sing N N 135 MET N H sing N N 136 MET N H2 sing N N 137 MET CA C sing N N 138 MET CA CB sing N N 139 MET CA HA sing N N 140 MET C O doub N N 141 MET C OXT sing N N 142 MET CB CG sing N N 143 MET CB HB2 sing N N 144 MET CB HB3 sing N N 145 MET CG SD sing N N 146 MET CG HG2 sing N N 147 MET CG HG3 sing N N 148 MET SD CE sing N N 149 MET CE HE1 sing N N 150 MET CE HE2 sing N N 151 MET CE HE3 sing N N 152 MET OXT HXT sing N N 153 ORN N CA sing N N 154 ORN N H sing N N 155 ORN N H2 sing N N 156 ORN CA CB sing N N 157 ORN CA C sing N N 158 ORN CA HA sing N N 159 ORN CB CG sing N N 160 ORN CB HB2 sing N N 161 ORN CB HB3 sing N N 162 ORN CG CD sing N N 163 ORN CG HG2 sing N N 164 ORN CG HG3 sing N N 165 ORN CD NE sing N N 166 ORN CD HD2 sing N N 167 ORN CD HD3 sing N N 168 ORN NE HE1 sing N N 169 ORN NE HE2 sing N N 170 ORN C O doub N N 171 ORN C OXT sing N N 172 ORN OXT HXT sing N N 173 PHE N CA sing N N 174 PHE N H sing N N 175 PHE N H2 sing N N 176 PHE CA C sing N N 177 PHE CA CB sing N N 178 PHE CA HA sing N N 179 PHE C O doub N N 180 PHE C OXT sing N N 181 PHE CB CG sing N N 182 PHE CB HB2 sing N N 183 PHE CB HB3 sing N N 184 PHE CG CD1 doub Y N 185 PHE CG CD2 sing Y N 186 PHE CD1 CE1 sing Y N 187 PHE CD1 HD1 sing N N 188 PHE CD2 CE2 doub Y N 189 PHE CD2 HD2 sing N N 190 PHE CE1 CZ doub Y N 191 PHE CE1 HE1 sing N N 192 PHE CE2 CZ sing Y N 193 PHE CE2 HE2 sing N N 194 PHE CZ HZ sing N N 195 PHE OXT HXT sing N N 196 VAL N CA sing N N 197 VAL N H sing N N 198 VAL N H2 sing N N 199 VAL CA C sing N N 200 VAL CA CB sing N N 201 VAL CA HA sing N N 202 VAL C O doub N N 203 VAL C OXT sing N N 204 VAL CB CG1 sing N N 205 VAL CB CG2 sing N N 206 VAL CB HB sing N N 207 VAL CG1 HG11 sing N N 208 VAL CG1 HG12 sing N N 209 VAL CG1 HG13 sing N N 210 VAL CG2 HG21 sing N N 211 VAL CG2 HG22 sing N N 212 VAL CG2 HG23 sing N N 213 VAL OXT HXT sing N N 214 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM097562 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5W4H _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #