HEADER VIRAL PROTEIN 18-AUG-20 7JTL TITLE STRUCTURE OF SARS-COV-2 ORF8 ACCESSORY PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF8 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ORF8, NON-STRUCTURAL PROTEIN 8, NS8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS-COV-2, SARS2, COVID-19, CORONAVIRUS, ACCESSORY PROTEIN, HOST- KEYWDS 2 FACTOR RESTRICTION, RNA VIRUS, IMMUNE EVASION, MHC-I, OPEN READING KEYWDS 3 FRAME 8, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.G.FLOWER,C.Z.BUFFALO,R.M.HOOY,M.ALLAIRE,X.REN,J.H.HURLEY REVDAT 4 10-FEB-21 7JTL 1 COMPND JRNL REMARK HET REVDAT 4 2 1 HETNAM FORMUL SHEET SSBOND REVDAT 4 3 1 LINK ATOM REVDAT 3 16-SEP-20 7JTL 1 JRNL REVDAT 2 09-SEP-20 7JTL 1 COMPND SOURCE JRNL DBREF REVDAT 2 2 1 SEQADV REVDAT 1 26-AUG-20 7JTL 0 JRNL AUTH T.G.FLOWER,C.Z.BUFFALO,R.M.HOOY,M.ALLAIRE,X.REN,J.H.HURLEY JRNL TITL STRUCTURE OF SARS-COV-2 ORF8, A RAPIDLY EVOLVING IMMUNE JRNL TITL 2 EVASION PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33361333 JRNL DOI 10.1073/PNAS.2021785118 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.G.FLOWER,C.Z.BUFFALO,R.M.HOOY,M.ALLAIRE,X.REN,J.H.HURLEY REMARK 1 TITL STRUCTURE OF SARS-COV-2 ORF8, A RAPIDLY EVOLVING CORONAVIRUS REMARK 1 TITL 2 PROTEIN IMPLICATED IN IMMUNE EVASION. REMARK 1 REF BIORXIV 2020 REMARK 1 REFN REMARK 1 PMID 32869027 REMARK 1 DOI 10.1101/2020.08.27.270637 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 17005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6500 - 4.6700 1.00 1520 166 0.2096 0.2274 REMARK 3 2 4.6700 - 3.7100 1.00 1380 153 0.1621 0.2242 REMARK 3 3 3.7100 - 3.2400 1.00 1377 154 0.2023 0.2415 REMARK 3 4 3.2400 - 2.9400 1.00 1329 145 0.2165 0.2120 REMARK 3 5 2.9400 - 2.7300 1.00 1337 149 0.2220 0.3016 REMARK 3 6 2.7300 - 2.5700 0.99 1322 148 0.2510 0.3079 REMARK 3 7 2.5700 - 2.4400 0.98 1284 142 0.2608 0.2999 REMARK 3 8 2.4400 - 2.3400 0.96 1243 136 0.2654 0.3287 REMARK 3 9 2.3400 - 2.2500 0.92 1199 136 0.2662 0.3124 REMARK 3 10 2.2500 - 2.1700 0.89 1173 131 0.3091 0.3531 REMARK 3 11 2.1700 - 2.1000 0.86 1100 122 0.3140 0.3445 REMARK 3 12 2.1000 - 2.0400 0.79 1041 118 0.3599 0.3850 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.259 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1666 REMARK 3 ANGLE : 0.991 2272 REMARK 3 CHIRALITY : 0.061 254 REMARK 3 PLANARITY : 0.007 290 REMARK 3 DIHEDRAL : 15.114 596 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5066 38.7414 111.8821 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.4823 REMARK 3 T33: 0.3447 T12: -0.0175 REMARK 3 T13: -0.0004 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.9016 L22: 0.5503 REMARK 3 L33: 0.8301 L12: -0.3241 REMARK 3 L13: 0.7770 L23: -0.2548 REMARK 3 S TENSOR REMARK 3 S11: -0.1723 S12: 0.1935 S13: 0.3931 REMARK 3 S21: 0.2825 S22: 0.1117 S23: -0.1514 REMARK 3 S31: -0.0399 S32: -0.1833 S33: -0.0013 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.0822 24.3404 116.8811 REMARK 3 T TENSOR REMARK 3 T11: 0.2969 T22: 0.3879 REMARK 3 T33: 0.4494 T12: 0.0121 REMARK 3 T13: 0.0095 T23: 0.0799 REMARK 3 L TENSOR REMARK 3 L11: 0.8272 L22: 0.5271 REMARK 3 L33: 0.8120 L12: 0.5105 REMARK 3 L13: -0.7893 L23: -0.3600 REMARK 3 S TENSOR REMARK 3 S11: -0.1737 S12: -0.4268 S13: -0.4456 REMARK 3 S21: 0.0449 S22: -0.0542 S23: -0.0595 REMARK 3 S31: 0.0453 S32: -0.1111 S33: -0.0027 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0986 16.2759 102.0040 REMARK 3 T TENSOR REMARK 3 T11: 0.4110 T22: 0.5710 REMARK 3 T33: 0.1974 T12: -0.0197 REMARK 3 T13: 0.0689 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.4269 L22: 4.4737 REMARK 3 L33: 0.4313 L12: 1.9386 REMARK 3 L13: 0.3182 L23: -0.3762 REMARK 3 S TENSOR REMARK 3 S11: 0.1716 S12: -0.3786 S13: 0.4137 REMARK 3 S21: 0.4594 S22: -0.5035 S23: 0.6831 REMARK 3 S31: 0.0400 S32: 0.4548 S33: -0.1023 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9656 28.2630 115.4266 REMARK 3 T TENSOR REMARK 3 T11: 0.2614 T22: 0.3950 REMARK 3 T33: 0.2867 T12: -0.0072 REMARK 3 T13: 0.0057 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.1017 L22: 1.8004 REMARK 3 L33: 1.1902 L12: 0.3269 REMARK 3 L13: -0.3679 L23: 0.6340 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: 0.1497 S13: 0.0174 REMARK 3 S21: 0.0505 S22: -0.0809 S23: -0.0993 REMARK 3 S31: 0.1019 S32: 0.0764 S33: -0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8035 33.1377 113.4943 REMARK 3 T TENSOR REMARK 3 T11: 0.2175 T22: 0.4343 REMARK 3 T33: 0.4322 T12: -0.0186 REMARK 3 T13: 0.0179 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 3.0202 L22: 3.0923 REMARK 3 L33: 3.1037 L12: -2.3275 REMARK 3 L13: -1.0760 L23: -1.0679 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.0032 S13: -0.0675 REMARK 3 S21: 0.2985 S22: -0.0186 S23: -0.4732 REMARK 3 S31: -0.0958 S32: 0.0636 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5156 47.5338 112.4522 REMARK 3 T TENSOR REMARK 3 T11: 0.3278 T22: 0.3599 REMARK 3 T33: 0.3545 T12: 0.0913 REMARK 3 T13: -0.1025 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.1297 L22: 0.9338 REMARK 3 L33: 1.2118 L12: -1.0217 REMARK 3 L13: -0.1596 L23: 0.3138 REMARK 3 S TENSOR REMARK 3 S11: -0.1628 S12: 0.0552 S13: 0.3801 REMARK 3 S21: 0.2762 S22: 0.0790 S23: 0.0140 REMARK 3 S31: -0.2596 S32: -0.0854 S33: 0.0009 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1819 50.1437 100.3417 REMARK 3 T TENSOR REMARK 3 T11: 0.4784 T22: 0.5203 REMARK 3 T33: 0.7210 T12: 0.0644 REMARK 3 T13: -0.0895 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.1549 L22: 0.1812 REMARK 3 L33: 0.3001 L12: 0.0788 REMARK 3 L13: -0.2195 L23: -0.1473 REMARK 3 S TENSOR REMARK 3 S11: 0.3842 S12: 0.6980 S13: 0.5445 REMARK 3 S21: 0.2496 S22: -0.5896 S23: 0.2165 REMARK 3 S31: -0.1180 S32: -0.3146 S33: -0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6891 37.7976 106.6155 REMARK 3 T TENSOR REMARK 3 T11: 0.2862 T22: 0.4551 REMARK 3 T33: 0.3692 T12: -0.0022 REMARK 3 T13: 0.0275 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 0.8112 L22: 0.6878 REMARK 3 L33: 0.7148 L12: 0.7496 REMARK 3 L13: 0.3734 L23: 0.2465 REMARK 3 S TENSOR REMARK 3 S11: -0.3727 S12: 0.2971 S13: -0.1121 REMARK 3 S21: 0.0092 S22: 0.2501 S23: 0.0392 REMARK 3 S31: 0.0834 S32: -0.1515 S33: -0.0004 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2028 46.7680 116.5354 REMARK 3 T TENSOR REMARK 3 T11: 0.3426 T22: 0.2902 REMARK 3 T33: 0.2820 T12: 0.0701 REMARK 3 T13: -0.1461 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.3470 L22: 0.5476 REMARK 3 L33: 1.2162 L12: 0.4002 REMARK 3 L13: 0.2002 L23: 0.8312 REMARK 3 S TENSOR REMARK 3 S11: -0.3423 S12: -0.0800 S13: 0.0970 REMARK 3 S21: 0.1924 S22: 0.0946 S23: -0.0839 REMARK 3 S31: -0.2533 S32: -0.1337 S33: -0.1906 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: chain "A" and (resid 18 through 63 or REMARK 3 (resid 64 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 69 REMARK 3 through 121)) REMARK 3 SELECTION : (chain "B" and ((resid 18 through 19 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 20 through 64 or REMARK 3 resid 69 through 120 or (resid 121 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JTL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17510 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 43.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.10090 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.59200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM DIHYDROGEN PHOSPHATE PH REMARK 280 6.5, 12 % (W/V) PEG8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 132.05550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 22.12900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 22.12900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.02775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 22.12900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 22.12900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 198.08325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 22.12900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.12900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.02775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 22.12900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.12900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 198.08325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 132.05550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 15 REMARK 465 ASN A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 65 REMARK 465 GLY A 66 REMARK 465 SER B 15 REMARK 465 ASN B 16 REMARK 465 ALA B 17 REMARK 465 GLY B 66 REMARK 465 SER B 67 REMARK 465 LYS B 68 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 SER A 67 OG REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 ILE A 121 CG1 CG2 CD1 REMARK 470 ASP B 63 CG OD1 OD2 REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 351 O HOH A 379 1.86 REMARK 500 O HOH A 370 O HOH A 392 1.88 REMARK 500 O HOH B 221 O HOH B 291 1.92 REMARK 500 O HOH A 364 O HOH A 384 1.93 REMARK 500 O HOH B 253 O HOH B 287 1.95 REMARK 500 OH TYR A 105 O HOH A 301 1.95 REMARK 500 O HOH A 353 O HOH A 372 1.97 REMARK 500 O HOH A 334 O HOH A 374 1.98 REMARK 500 O HOH B 231 O HOH B 266 2.00 REMARK 500 O HOH B 231 O HOH B 257 2.01 REMARK 500 O HOH B 271 O HOH B 292 2.04 REMARK 500 O HOH B 208 O HOH B 277 2.05 REMARK 500 O HOH A 387 O HOH B 282 2.05 REMARK 500 O HOH B 234 O HOH B 284 2.07 REMARK 500 O HOH B 258 O HOH B 260 2.11 REMARK 500 O HOH A 367 O HOH A 388 2.13 REMARK 500 O HOH A 311 O HOH A 366 2.13 REMARK 500 OD2 ASP B 107 O HOH B 201 2.13 REMARK 500 O GLU A 64 O HOH A 302 2.14 REMARK 500 OG SER B 69 O HOH B 202 2.14 REMARK 500 O HOH B 254 O HOH B 268 2.14 REMARK 500 O HOH B 271 O HOH B 280 2.19 REMARK 500 O HOH A 338 O HOH A 370 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 317 O HOH A 352 1545 2.04 REMARK 500 O HOH A 389 O HOH B 281 6565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 51.47 -140.96 REMARK 500 SER A 69 140.86 177.25 REMARK 500 CYS A 90 98.36 -65.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 407 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B 294 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B 295 DISTANCE = 6.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 307 O REMARK 620 2 HOH B 287 O 130.5 REMARK 620 N 1 DBREF 7JTL A 18 121 UNP P0DTC8 NS8_SARS2 18 121 DBREF 7JTL B 18 121 UNP P0DTC8 NS8_SARS2 18 121 SEQADV 7JTL SER A 15 UNP P0DTC8 EXPRESSION TAG SEQADV 7JTL ASN A 16 UNP P0DTC8 EXPRESSION TAG SEQADV 7JTL ALA A 17 UNP P0DTC8 EXPRESSION TAG SEQADV 7JTL SER B 15 UNP P0DTC8 EXPRESSION TAG SEQADV 7JTL ASN B 16 UNP P0DTC8 EXPRESSION TAG SEQADV 7JTL ALA B 17 UNP P0DTC8 EXPRESSION TAG SEQRES 1 A 107 SER ASN ALA GLN GLU CYS SER LEU GLN SER CYS THR GLN SEQRES 2 A 107 HIS GLN PRO TYR VAL VAL ASP ASP PRO CYS PRO ILE HIS SEQRES 3 A 107 PHE TYR SER LYS TRP TYR ILE ARG VAL GLY ALA ARG LYS SEQRES 4 A 107 SER ALA PRO LEU ILE GLU LEU CYS VAL ASP GLU ALA GLY SEQRES 5 A 107 SER LYS SER PRO ILE GLN TYR ILE ASP ILE GLY ASN TYR SEQRES 6 A 107 THR VAL SER CYS LEU PRO PHE THR ILE ASN CYS GLN GLU SEQRES 7 A 107 PRO LYS LEU GLY SER LEU VAL VAL ARG CYS SER PHE TYR SEQRES 8 A 107 GLU ASP PHE LEU GLU TYR HIS ASP VAL ARG VAL VAL LEU SEQRES 9 A 107 ASP PHE ILE SEQRES 1 B 107 SER ASN ALA GLN GLU CYS SER LEU GLN SER CYS THR GLN SEQRES 2 B 107 HIS GLN PRO TYR VAL VAL ASP ASP PRO CYS PRO ILE HIS SEQRES 3 B 107 PHE TYR SER LYS TRP TYR ILE ARG VAL GLY ALA ARG LYS SEQRES 4 B 107 SER ALA PRO LEU ILE GLU LEU CYS VAL ASP GLU ALA GLY SEQRES 5 B 107 SER LYS SER PRO ILE GLN TYR ILE ASP ILE GLY ASN TYR SEQRES 6 B 107 THR VAL SER CYS LEU PRO PHE THR ILE ASN CYS GLN GLU SEQRES 7 B 107 PRO LYS LEU GLY SER LEU VAL VAL ARG CYS SER PHE TYR SEQRES 8 B 107 GLU ASP PHE LEU GLU TYR HIS ASP VAL ARG VAL VAL LEU SEQRES 9 B 107 ASP PHE ILE HET NA A 201 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *202(H2 O) SHEET 1 AA1 5 CYS A 20 CYS A 25 0 SHEET 2 AA1 5 TYR A 111 PHE A 120 1 O ASP A 119 N GLN A 23 SHEET 3 AA1 5 GLY A 96 SER A 103 -1 N VAL A 100 O VAL A 114 SHEET 4 AA1 5 TYR A 42 VAL A 49 -1 N TYR A 42 O SER A 103 SHEET 5 AA1 5 LEU A 57 GLU A 59 -1 O ILE A 58 N ILE A 47 SHEET 1 AA2 3 PRO A 30 VAL A 32 0 SHEET 2 AA2 3 THR A 87 ASN A 89 -1 O ILE A 88 N TYR A 31 SHEET 3 AA2 3 THR A 80 SER A 82 -1 N SER A 82 O THR A 87 SHEET 1 AA3 5 GLU B 19 CYS B 25 0 SHEET 2 AA3 5 HIS B 112 PHE B 120 1 O ASP B 119 N GLN B 23 SHEET 3 AA3 5 GLY B 96 SER B 103 -1 N CYS B 102 O HIS B 112 SHEET 4 AA3 5 TYR B 42 VAL B 49 -1 N TYR B 42 O SER B 103 SHEET 5 AA3 5 LEU B 57 GLU B 59 -1 O ILE B 58 N ILE B 47 SHEET 1 AA4 3 PRO B 30 VAL B 32 0 SHEET 2 AA4 3 THR B 87 ASN B 89 -1 O ILE B 88 N TYR B 31 SHEET 3 AA4 3 THR B 80 SER B 82 -1 N SER B 82 O THR B 87 SSBOND 1 CYS A 20 CYS B 20 1555 1555 2.06 SSBOND 2 CYS A 25 CYS A 90 1555 1555 2.02 SSBOND 3 CYS A 37 CYS A 102 1555 1555 2.04 SSBOND 4 CYS A 61 CYS A 83 1555 1555 2.07 SSBOND 5 CYS B 25 CYS B 90 1555 1555 2.02 SSBOND 6 CYS B 37 CYS B 102 1555 1555 2.01 SSBOND 7 CYS B 61 CYS B 83 1555 1555 2.08 LINK NA NA A 201 O HOH A 307 1555 1555 2.38 LINK NA NA A 201 O HOH B 287 1555 1555 2.80 CISPEP 1 LEU A 84 PRO A 85 0 -6.82 CISPEP 2 LEU B 84 PRO B 85 0 -5.54 CRYST1 44.258 44.258 264.111 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022595 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003786 0.00000 MTRIX1 1 -0.999049 0.030579 0.031078 75.72260 1 MTRIX2 1 -0.018405 -0.941971 0.335190 32.30323 1 MTRIX3 1 0.039524 0.334300 0.941638 -7.30091 1