HEADER TRANSFERASE 25-AUG-20 7JWE TITLE GEDATOLISIB BOUND TO THE PI3KG CATALYTIC SUBUNIT P110 GAMMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC COMPND 3 SUBUNIT GAMMA ISOFORM; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PTDINS-3-KINASE SUBUNIT GAMMA,PHOSPHATIDYLINOSITOL 4,5- COMPND 6 BISPHOSPHATE 3-KINASE 110 KDA CATALYTIC SUBUNIT GAMMA,P110GAMMA, COMPND 7 PHOSPHOINOSITIDE-3-KINASE CATALYTIC GAMMA POLYPEPTIDE, COMPND 8 SERINE/THREONINE PROTEIN KINASE PIK3CG,P120-PI3K; COMPND 9 EC: 2.7.1.153, 2.7.11.1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIK3CG; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PIK3CG, MTOR, PHOSPHOINOSITIDE, PIP3, PI3K, P110, SIGNALING PROTEIN, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.BURKE,M.K.RATHINASWAMY,N.J.HARRIS REVDAT 2 18-OCT-23 7JWE 1 REMARK REVDAT 1 17-MAR-21 7JWE 0 JRNL AUTH M.K.RATHINASWAMY,Z.GAIEB,K.D.FLEMING,C.BORSARI,N.J.HARRIS, JRNL AUTH 2 B.J.MOELLER,M.P.WYMANN,R.E.AMARO,J.E.BURKE JRNL TITL DISEASE RELATED MUTATIONS IN PI3K GAMMA DISRUPT REGULATORY JRNL TITL 2 C-TERMINAL DYNAMICS AND REVEAL A PATH TO SELECTIVE JRNL TITL 3 INHIBITORS. JRNL REF ELIFE V. 10 2021 JRNL REFN ESSN 2050-084X JRNL PMID 33661099 JRNL DOI 10.7554/ELIFE.64691 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 33173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5900 - 5.8300 0.99 2711 142 0.1921 0.2424 REMARK 3 2 5.8300 - 4.6300 0.99 2641 139 0.1923 0.2171 REMARK 3 3 4.6300 - 4.0500 0.99 2646 140 0.1638 0.1813 REMARK 3 4 4.0500 - 3.6800 0.99 2622 137 0.1899 0.2508 REMARK 3 5 3.6800 - 3.4100 1.00 2614 138 0.2098 0.2752 REMARK 3 6 3.4100 - 3.2100 0.99 2612 138 0.2303 0.2685 REMARK 3 7 3.2100 - 3.0500 1.00 2604 137 0.2519 0.3332 REMARK 3 8 3.0500 - 2.9200 1.00 2633 138 0.2680 0.3174 REMARK 3 9 2.9200 - 2.8100 0.99 2599 137 0.2759 0.3212 REMARK 3 10 2.8100 - 2.7100 1.00 2608 138 0.2877 0.3425 REMARK 3 11 2.7100 - 2.6200 1.00 2595 135 0.3417 0.3651 REMARK 3 12 2.6200 - 2.5500 0.99 2630 139 0.3933 0.4517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4592 -28.0206 24.3913 REMARK 3 T TENSOR REMARK 3 T11: 0.7254 T22: 0.5026 REMARK 3 T33: 0.7864 T12: 0.0148 REMARK 3 T13: -0.0290 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.9425 L22: 1.1091 REMARK 3 L33: 2.4829 L12: 0.0624 REMARK 3 L13: -0.3808 L23: -0.5357 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.0538 S13: -0.5102 REMARK 3 S21: 0.0121 S22: 0.1803 S23: 0.3346 REMARK 3 S31: 0.0822 S32: -0.0974 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 423 THROUGH 688 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.4597 -25.9636 30.1933 REMARK 3 T TENSOR REMARK 3 T11: 0.6808 T22: 0.5779 REMARK 3 T33: 0.6835 T12: 0.0037 REMARK 3 T13: 0.0246 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 3.7849 L22: 1.1744 REMARK 3 L33: 2.2418 L12: -0.7658 REMARK 3 L13: 0.9815 L23: -0.0546 REMARK 3 S TENSOR REMARK 3 S11: 0.0643 S12: -0.0219 S13: -0.4093 REMARK 3 S21: 0.0057 S22: 0.0447 S23: -0.0339 REMARK 3 S31: 0.1081 S32: 0.4609 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 689 THROUGH 1037 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6856 -7.6804 25.2945 REMARK 3 T TENSOR REMARK 3 T11: 0.7259 T22: 0.6090 REMARK 3 T33: 0.6847 T12: 0.0605 REMARK 3 T13: 0.0321 T23: 0.0540 REMARK 3 L TENSOR REMARK 3 L11: 3.8573 L22: 2.7650 REMARK 3 L33: 1.6434 L12: -1.1784 REMARK 3 L13: 0.9800 L23: -0.2025 REMARK 3 S TENSOR REMARK 3 S11: -0.1948 S12: 0.0866 S13: 0.3835 REMARK 3 S21: 0.1525 S22: 0.1061 S23: 0.3206 REMARK 3 S31: -0.4023 S32: -0.3722 S33: -0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1038 THROUGH 1090 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9921 2.7200 37.9537 REMARK 3 T TENSOR REMARK 3 T11: 1.3618 T22: 0.9002 REMARK 3 T33: 1.2611 T12: 0.0335 REMARK 3 T13: -0.2475 T23: -0.1517 REMARK 3 L TENSOR REMARK 3 L11: 0.5965 L22: 0.5043 REMARK 3 L33: 0.4023 L12: -0.1579 REMARK 3 L13: 0.0255 L23: -0.4653 REMARK 3 S TENSOR REMARK 3 S11: -0.4247 S12: -0.2514 S13: 1.0390 REMARK 3 S21: 0.4429 S22: -0.1156 S23: -0.8175 REMARK 3 S31: -0.5467 S32: 0.2435 S33: -0.0007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JWE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33183 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 44.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 1.34900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JHA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 7.5, 250 MM (NH4)2SO4 REMARK 280 AND 20-22% PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.75000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.75000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 143 REMARK 465 SER A 144 REMARK 465 ARG A 226 REMARK 465 SER A 227 REMARK 465 THR A 228 REMARK 465 THR A 229 REMARK 465 LYS A 251 REMARK 465 MET A 252 REMARK 465 ALA A 253 REMARK 465 LYS A 254 REMARK 465 LYS A 255 REMARK 465 LYS A 256 REMARK 465 SER A 257 REMARK 465 LEU A 258 REMARK 465 MET A 259 REMARK 465 ASP A 260 REMARK 465 ILE A 261 REMARK 465 PRO A 262 REMARK 465 GLU A 263 REMARK 465 SER A 264 REMARK 465 GLN A 265 REMARK 465 SER A 266 REMARK 465 GLU A 267 REMARK 465 GLU A 322 REMARK 465 TRP A 323 REMARK 465 PRO A 324 REMARK 465 LEU A 325 REMARK 465 VAL A 326 REMARK 465 ASP A 327 REMARK 465 ASP A 328 REMARK 465 CYS A 329 REMARK 465 THR A 330 REMARK 465 GLY A 331 REMARK 465 VAL A 332 REMARK 465 THR A 333 REMARK 465 GLY A 334 REMARK 465 TYR A 335 REMARK 465 HIS A 336 REMARK 465 GLU A 337 REMARK 465 GLN A 338 REMARK 465 LEU A 339 REMARK 465 THR A 340 REMARK 465 ILE A 341 REMARK 465 HIS A 342 REMARK 465 GLY A 343 REMARK 465 LYS A 344 REMARK 465 ASP A 345 REMARK 465 HIS A 346 REMARK 465 GLU A 347 REMARK 465 SER A 348 REMARK 465 VAL A 349 REMARK 465 PHE A 350 REMARK 465 THR A 351 REMARK 465 VAL A 352 REMARK 465 SER A 353 REMARK 465 LEU A 354 REMARK 465 TRP A 355 REMARK 465 ASP A 356 REMARK 465 PRO A 374 REMARK 465 ARG A 375 REMARK 465 ASN A 376 REMARK 465 THR A 377 REMARK 465 GLY A 436 REMARK 465 LYS A 437 REMARK 465 ALA A 438 REMARK 465 PRO A 439 REMARK 465 ALA A 440 REMARK 465 LEU A 441 REMARK 465 SER A 442 REMARK 465 SER A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 ALA A 447 REMARK 465 GLU A 448 REMARK 465 SER A 449 REMARK 465 PRO A 450 REMARK 465 SER A 451 REMARK 465 SER A 452 REMARK 465 GLU A 453 REMARK 465 SER A 454 REMARK 465 LYS A 455 REMARK 465 GLY A 456 REMARK 465 LYS A 457 REMARK 465 VAL A 458 REMARK 465 LYS A 490 REMARK 465 GLY A 491 REMARK 465 GLU A 492 REMARK 465 ASP A 493 REMARK 465 GLN A 494 REMARK 465 GLY A 495 REMARK 465 SER A 496 REMARK 465 TYR A 523 REMARK 465 CYS A 524 REMARK 465 HIS A 525 REMARK 465 PRO A 526 REMARK 465 ILE A 527 REMARK 465 ALA A 528 REMARK 465 LEU A 529 REMARK 465 PRO A 530 REMARK 465 LYS A 531 REMARK 465 HIS A 532 REMARK 465 GLN A 533 REMARK 465 PRO A 534 REMARK 465 THR A 535 REMARK 465 PRO A 536 REMARK 465 ASP A 537 REMARK 465 PRO A 538 REMARK 465 GLU A 539 REMARK 465 GLY A 540 REMARK 465 ASP A 541 REMARK 465 ARG A 542 REMARK 465 VAL A 543 REMARK 465 ARG A 544 REMARK 465 SER A 777 REMARK 465 GLN A 778 REMARK 465 LEU A 779 REMARK 465 GLY A 970 REMARK 465 ASN A 971 REMARK 465 TYR A 972 REMARK 465 LYS A 973 REMARK 465 SER A 974 REMARK 465 PHE A 975 REMARK 465 LEU A 976 REMARK 465 GLY A 977 REMARK 465 ILE A 978 REMARK 465 ASN A 979 REMARK 465 LYS A 980 REMARK 465 GLU A 981 REMARK 465 SER A 998 REMARK 465 GLY A 999 REMARK 465 LYS A 1000 REMARK 465 LYS A 1001 REMARK 465 VAL A 1091 REMARK 465 LEU A 1092 REMARK 465 GLY A 1093 REMARK 465 ILE A 1094 REMARK 465 LYS A 1095 REMARK 465 GLN A 1096 REMARK 465 GLY A 1097 REMARK 465 GLU A 1098 REMARK 465 LYS A 1099 REMARK 465 HIS A 1100 REMARK 465 SER A 1101 REMARK 465 ALA A 1102 REMARK 465 HIS A 1103 REMARK 465 HIS A 1104 REMARK 465 HIS A 1105 REMARK 465 HIS A 1106 REMARK 465 HIS A 1107 REMARK 465 HIS A 1108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 378 CG OD1 OD2 REMARK 470 GLN A 459 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 992 N GLY A 996 2.09 REMARK 500 OG1 THR A 988 OD1 ASP A 990 2.13 REMARK 500 O TRP A 1080 N PHE A 1084 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 170 -178.74 -174.56 REMARK 500 HIS A 199 63.83 39.32 REMARK 500 ALA A 216 -157.72 -82.94 REMARK 500 LYS A 288 -38.21 -37.14 REMARK 500 ILE A 303 95.09 -66.00 REMARK 500 GLN A 391 -1.74 68.43 REMARK 500 LYS A 501 0.81 -68.28 REMARK 500 PHE A 578 41.52 -102.27 REMARK 500 LYS A 597 89.25 -68.79 REMARK 500 GLN A 705 19.04 -140.56 REMARK 500 ASP A 788 78.51 -152.22 REMARK 500 ALA A 797 75.02 -102.93 REMARK 500 ALA A 805 42.24 73.22 REMARK 500 LYS A 809 66.72 34.29 REMARK 500 LEU A 865 75.77 -117.27 REMARK 500 CYS A 869 114.83 -166.85 REMARK 500 PHE A 961 147.32 -171.85 REMARK 500 ASP A 964 85.15 62.26 REMARK 500 THR A1024 -57.71 -25.12 REMARK 500 GLN A1041 -126.02 50.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VL1 A 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JHA RELATED DB: PDB REMARK 900 5JHA CONTAINS THE SAME PROTEIN BOUND TO DIFFERENT INHIBITOR DBREF 7JWE A 144 1102 UNP P48736 PK3CG_HUMAN 144 1102 SEQADV 7JWE MET A 143 UNP P48736 INITIATING METHIONINE SEQADV 7JWE HIS A 1103 UNP P48736 EXPRESSION TAG SEQADV 7JWE HIS A 1104 UNP P48736 EXPRESSION TAG SEQADV 7JWE HIS A 1105 UNP P48736 EXPRESSION TAG SEQADV 7JWE HIS A 1106 UNP P48736 EXPRESSION TAG SEQADV 7JWE HIS A 1107 UNP P48736 EXPRESSION TAG SEQADV 7JWE HIS A 1108 UNP P48736 EXPRESSION TAG SEQRES 1 A 966 MET SER GLU GLU SER GLN ALA PHE GLN ARG GLN LEU THR SEQRES 2 A 966 ALA LEU ILE GLY TYR ASP VAL THR ASP VAL SER ASN VAL SEQRES 3 A 966 HIS ASP ASP GLU LEU GLU PHE THR ARG ARG GLY LEU VAL SEQRES 4 A 966 THR PRO ARG MET ALA GLU VAL ALA SER ARG ASP PRO LYS SEQRES 5 A 966 LEU TYR ALA MET HIS PRO TRP VAL THR SER LYS PRO LEU SEQRES 6 A 966 PRO GLU TYR LEU TRP LYS LYS ILE ALA ASN ASN CYS ILE SEQRES 7 A 966 PHE ILE VAL ILE HIS ARG SER THR THR SER GLN THR ILE SEQRES 8 A 966 LYS VAL SER PRO ASP ASP THR PRO GLY ALA ILE LEU GLN SEQRES 9 A 966 SER PHE PHE THR LYS MET ALA LYS LYS LYS SER LEU MET SEQRES 10 A 966 ASP ILE PRO GLU SER GLN SER GLU GLN ASP PHE VAL LEU SEQRES 11 A 966 ARG VAL CYS GLY ARG ASP GLU TYR LEU VAL GLY GLU THR SEQRES 12 A 966 PRO ILE LYS ASN PHE GLN TRP VAL ARG HIS CYS LEU LYS SEQRES 13 A 966 ASN GLY GLU GLU ILE HIS VAL VAL LEU ASP THR PRO PRO SEQRES 14 A 966 ASP PRO ALA LEU ASP GLU VAL ARG LYS GLU GLU TRP PRO SEQRES 15 A 966 LEU VAL ASP ASP CYS THR GLY VAL THR GLY TYR HIS GLU SEQRES 16 A 966 GLN LEU THR ILE HIS GLY LYS ASP HIS GLU SER VAL PHE SEQRES 17 A 966 THR VAL SER LEU TRP ASP CYS ASP ARG LYS PHE ARG VAL SEQRES 18 A 966 LYS ILE ARG GLY ILE ASP ILE PRO VAL LEU PRO ARG ASN SEQRES 19 A 966 THR ASP LEU THR VAL PHE VAL GLU ALA ASN ILE GLN HIS SEQRES 20 A 966 GLY GLN GLN VAL LEU CYS GLN ARG ARG THR SER PRO LYS SEQRES 21 A 966 PRO PHE THR GLU GLU VAL LEU TRP ASN VAL TRP LEU GLU SEQRES 22 A 966 PHE SER ILE LYS ILE LYS ASP LEU PRO LYS GLY ALA LEU SEQRES 23 A 966 LEU ASN LEU GLN ILE TYR CYS GLY LYS ALA PRO ALA LEU SEQRES 24 A 966 SER SER LYS ALA SER ALA GLU SER PRO SER SER GLU SER SEQRES 25 A 966 LYS GLY LYS VAL GLN LEU LEU TYR TYR VAL ASN LEU LEU SEQRES 26 A 966 LEU ILE ASP HIS ARG PHE LEU LEU ARG ARG GLY GLU TYR SEQRES 27 A 966 VAL LEU HIS MET TRP GLN ILE SER GLY LYS GLY GLU ASP SEQRES 28 A 966 GLN GLY SER PHE ASN ALA ASP LYS LEU THR SER ALA THR SEQRES 29 A 966 ASN PRO ASP LYS GLU ASN SER MET SER ILE SER ILE LEU SEQRES 30 A 966 LEU ASP ASN TYR CYS HIS PRO ILE ALA LEU PRO LYS HIS SEQRES 31 A 966 GLN PRO THR PRO ASP PRO GLU GLY ASP ARG VAL ARG ALA SEQRES 32 A 966 GLU MET PRO ASN GLN LEU ARG LYS GLN LEU GLU ALA ILE SEQRES 33 A 966 ILE ALA THR ASP PRO LEU ASN PRO LEU THR ALA GLU ASP SEQRES 34 A 966 LYS GLU LEU LEU TRP HIS PHE ARG TYR GLU SER LEU LYS SEQRES 35 A 966 HIS PRO LYS ALA TYR PRO LYS LEU PHE SER SER VAL LYS SEQRES 36 A 966 TRP GLY GLN GLN GLU ILE VAL ALA LYS THR TYR GLN LEU SEQRES 37 A 966 LEU ALA ARG ARG GLU VAL TRP ASP GLN SER ALA LEU ASP SEQRES 38 A 966 VAL GLY LEU THR MET GLN LEU LEU ASP CYS ASN PHE SER SEQRES 39 A 966 ASP GLU ASN VAL ARG ALA ILE ALA VAL GLN LYS LEU GLU SEQRES 40 A 966 SER LEU GLU ASP ASP ASP VAL LEU HIS TYR LEU LEU GLN SEQRES 41 A 966 LEU VAL GLN ALA VAL LYS PHE GLU PRO TYR HIS ASP SER SEQRES 42 A 966 ALA LEU ALA ARG PHE LEU LEU LYS ARG GLY LEU ARG ASN SEQRES 43 A 966 LYS ARG ILE GLY HIS PHE LEU PHE TRP PHE LEU ARG SER SEQRES 44 A 966 GLU ILE ALA GLN SER ARG HIS TYR GLN GLN ARG PHE ALA SEQRES 45 A 966 VAL ILE LEU GLU ALA TYR LEU ARG GLY CYS GLY THR ALA SEQRES 46 A 966 MET LEU HIS ASP PHE THR GLN GLN VAL GLN VAL ILE GLU SEQRES 47 A 966 MET LEU GLN LYS VAL THR LEU ASP ILE LYS SER LEU SER SEQRES 48 A 966 ALA GLU LYS TYR ASP VAL SER SER GLN VAL ILE SER GLN SEQRES 49 A 966 LEU LYS GLN LYS LEU GLU ASN LEU GLN ASN SER GLN LEU SEQRES 50 A 966 PRO GLU SER PHE ARG VAL PRO TYR ASP PRO GLY LEU LYS SEQRES 51 A 966 ALA GLY ALA LEU ALA ILE GLU LYS CYS LYS VAL MET ALA SEQRES 52 A 966 SER LYS LYS LYS PRO LEU TRP LEU GLU PHE LYS CYS ALA SEQRES 53 A 966 ASP PRO THR ALA LEU SER ASN GLU THR ILE GLY ILE ILE SEQRES 54 A 966 PHE LYS HIS GLY ASP ASP LEU ARG GLN ASP MET LEU ILE SEQRES 55 A 966 LEU GLN ILE LEU ARG ILE MET GLU SER ILE TRP GLU THR SEQRES 56 A 966 GLU SER LEU ASP LEU CYS LEU LEU PRO TYR GLY CYS ILE SEQRES 57 A 966 SER THR GLY ASP LYS ILE GLY MET ILE GLU ILE VAL LYS SEQRES 58 A 966 ASP ALA THR THR ILE ALA LYS ILE GLN GLN SER THR VAL SEQRES 59 A 966 GLY ASN THR GLY ALA PHE LYS ASP GLU VAL LEU ASN HIS SEQRES 60 A 966 TRP LEU LYS GLU LYS SER PRO THR GLU GLU LYS PHE GLN SEQRES 61 A 966 ALA ALA VAL GLU ARG PHE VAL TYR SER CYS ALA GLY TYR SEQRES 62 A 966 CYS VAL ALA THR PHE VAL LEU GLY ILE GLY ASP ARG HIS SEQRES 63 A 966 ASN ASP ASN ILE MET ILE THR GLU THR GLY ASN LEU PHE SEQRES 64 A 966 HIS ILE ASP PHE GLY HIS ILE LEU GLY ASN TYR LYS SER SEQRES 65 A 966 PHE LEU GLY ILE ASN LYS GLU ARG VAL PRO PHE VAL LEU SEQRES 66 A 966 THR PRO ASP PHE LEU PHE VAL MET GLY THR SER GLY LYS SEQRES 67 A 966 LYS THR SER PRO HIS PHE GLN LYS PHE GLN ASP ILE CYS SEQRES 68 A 966 VAL LYS ALA TYR LEU ALA LEU ARG HIS HIS THR ASN LEU SEQRES 69 A 966 LEU ILE ILE LEU PHE SER MET MET LEU MET THR GLY MET SEQRES 70 A 966 PRO GLN LEU THR SER LYS GLU ASP ILE GLU TYR ILE ARG SEQRES 71 A 966 ASP ALA LEU THR VAL GLY LYS ASN GLU GLU ASP ALA LYS SEQRES 72 A 966 LYS TYR PHE LEU ASP GLN ILE GLU VAL CYS ARG ASP LYS SEQRES 73 A 966 GLY TRP THR VAL GLN PHE ASN TRP PHE LEU HIS LEU VAL SEQRES 74 A 966 LEU GLY ILE LYS GLN GLY GLU LYS HIS SER ALA HIS HIS SEQRES 75 A 966 HIS HIS HIS HIS HET VL1 A1201 86 HETNAM VL1 GEDATOLISIB HETSYN VL1 N-{4-[4,6-BIS(MORPHOLIN-4-YL)-1,3,5-TRIAZIN-2- HETSYN 2 VL1 YL]PHENYL}-N'-{4-[4-(DIMETHYLAMINO)PIPERIDINE-1- HETSYN 3 VL1 CARBONYL]PHENYL}UREA FORMUL 2 VL1 C32 H41 N9 O4 FORMUL 3 HOH *9(H2 O) HELIX 1 AA1 GLU A 145 GLY A 159 1 15 HELIX 2 AA2 ASP A 171 ARG A 191 1 21 HELIX 3 AA3 ASP A 192 HIS A 199 1 8 HELIX 4 AA4 PRO A 208 LYS A 213 1 6 HELIX 5 AA5 THR A 240 THR A 250 1 11 HELIX 6 AA6 PRO A 286 ASN A 289 5 4 HELIX 7 AA7 PHE A 290 ASN A 299 1 10 HELIX 8 AA8 ASP A 312 GLU A 317 5 6 HELIX 9 AA9 LYS A 421 LEU A 423 5 3 HELIX 10 AB1 ASN A 498 THR A 503 5 6 HELIX 11 AB2 PRO A 548 THR A 561 1 14 HELIX 12 AB3 THR A 568 PHE A 578 1 11 HELIX 13 AB4 PHE A 578 LEU A 583 1 6 HELIX 14 AB5 LYS A 584 LYS A 587 5 4 HELIX 15 AB6 ALA A 588 SER A 595 1 8 HELIX 16 AB7 GLN A 600 ARG A 613 1 14 HELIX 17 AB8 ARG A 614 SER A 620 1 7 HELIX 18 AB9 ASP A 623 ASP A 632 1 10 HELIX 19 AC1 ASP A 637 GLU A 649 1 13 HELIX 20 AC2 GLU A 652 VAL A 667 1 16 HELIX 21 AC3 LYS A 668 GLU A 670 5 3 HELIX 22 AC4 SER A 675 ASN A 688 1 14 HELIX 23 AC5 ASN A 688 SER A 706 1 19 HELIX 24 AC6 TYR A 709 ARG A 722 1 14 HELIX 25 AC7 GLY A 725 SER A 753 1 29 HELIX 26 AC8 SER A 760 GLN A 775 1 16 HELIX 27 AC9 ILE A 798 CYS A 801 5 4 HELIX 28 AD1 LEU A 838 GLU A 858 1 21 HELIX 29 AD2 ILE A 888 VAL A 896 1 9 HELIX 30 AD3 GLU A 905 SER A 915 1 11 HELIX 31 AD4 THR A 917 GLY A 943 1 27 HELIX 32 AD5 HIS A 948 ASP A 950 5 3 HELIX 33 AD6 THR A 988 GLY A 996 1 9 HELIX 34 AD7 SER A 1003 HIS A 1022 1 20 HELIX 35 AD8 HIS A 1023 GLY A 1038 1 16 HELIX 36 AD9 SER A 1044 LEU A 1055 1 12 HELIX 37 AE1 ASN A 1060 GLY A 1079 1 20 HELIX 38 AE2 GLY A 1079 LEU A 1090 1 12 SHEET 1 AA1 4 GLN A 231 VAL A 235 0 SHEET 2 AA1 4 ILE A 220 HIS A 225 -1 N ILE A 224 O GLN A 231 SHEET 3 AA1 4 ILE A 303 ASP A 308 1 O VAL A 305 N VAL A 223 SHEET 4 AA1 4 VAL A 271 VAL A 274 -1 N ARG A 273 O VAL A 306 SHEET 1 AA2 4 GLU A 407 LYS A 419 0 SHEET 2 AA2 4 LYS A 360 ASP A 369 -1 N VAL A 363 O LEU A 414 SHEET 3 AA2 4 SER A 515 LEU A 520 -1 O LEU A 519 N LYS A 364 SHEET 4 AA2 4 GLY A 478 HIS A 483 -1 N GLY A 478 O LEU A 520 SHEET 1 AA3 3 GLN A 392 ARG A 398 0 SHEET 2 AA3 3 THR A 380 HIS A 389 -1 N ILE A 387 O LEU A 394 SHEET 3 AA3 3 LYS A 402 PRO A 403 -1 O LYS A 402 N VAL A 381 SHEET 1 AA4 5 GLN A 392 ARG A 398 0 SHEET 2 AA4 5 THR A 380 HIS A 389 -1 N ILE A 387 O LEU A 394 SHEET 3 AA4 5 LEU A 428 TYR A 434 -1 O LEU A 428 N GLN A 388 SHEET 4 AA4 5 TYR A 462 LEU A 467 -1 O LEU A 466 N LEU A 429 SHEET 5 AA4 5 TRP A 485 GLN A 486 -1 O TRP A 485 N TYR A 463 SHEET 1 AA5 4 PHE A 783 VAL A 785 0 SHEET 2 AA5 4 ASP A 788 LEU A 796 -1 O LEU A 791 N VAL A 785 SHEET 3 AA5 4 LEU A 811 CYS A 817 -1 O LYS A 816 N GLY A 794 SHEET 4 AA5 4 LYS A 802 VAL A 803 -1 N LYS A 802 O TRP A 812 SHEET 1 AA6 6 PHE A 783 VAL A 785 0 SHEET 2 AA6 6 ASP A 788 LEU A 796 -1 O LEU A 791 N VAL A 785 SHEET 3 AA6 6 LEU A 811 CYS A 817 -1 O LYS A 816 N GLY A 794 SHEET 4 AA6 6 ILE A 828 HIS A 834 -1 O ILE A 830 N LEU A 813 SHEET 5 AA6 6 ILE A 876 GLU A 880 -1 O ILE A 879 N ILE A 831 SHEET 6 AA6 6 CYS A 869 GLY A 873 -1 N ILE A 870 O MET A 878 SHEET 1 AA7 3 ALA A 885 THR A 887 0 SHEET 2 AA7 3 ILE A 952 THR A 955 -1 O ILE A 954 N THR A 886 SHEET 3 AA7 3 LEU A 960 HIS A 962 -1 O PHE A 961 N MET A 953 SITE 1 AC1 15 MET A 804 ILE A 831 ASP A 836 ASP A 837 SITE 2 AC1 15 ASP A 841 TYR A 867 GLU A 880 ILE A 881 SITE 3 AC1 15 VAL A 882 THR A 887 ILE A 963 ASP A 964 SITE 4 AC1 15 GLY A 966 HIS A 967 MET A1039 CRYST1 143.500 67.620 106.330 90.00 95.43 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006969 0.000000 0.000662 0.00000 SCALE2 0.000000 0.014789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009447 0.00000