HEADER VIRAL PROTEIN/IMMUNE SYSTEM 26-AUG-20 7JX3 TITLE MAPPING NEUTRALIZING AND IMMUNODOMINANT SITES ON THE SARS-COV-2 SPIKE TITLE 2 RECEPTOR-BINDING DOMAIN BY STRUCTURE-GUIDED HIGH-RESOLUTION SEROLOGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN OF FAB DOMAIN OF MONOCLONAL ANTIBODY S309; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN OF FAB DOMAIN OF MONOCLONAL ANTIBODY S309; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LIGHT CHAIN OF FAB DOMAIN OF MONOCLONAL ANTIBODY S2H14; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: HEAVY CHAIN OF FAB DOMAIN OF MONOCLONAL ANTIBODY S2H14; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: LIGHT CHAIN OF FAB DOMAIN OF MONOCLONAL ANTIBODY S304; COMPND 19 CHAIN: L; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 6; COMPND 22 MOLECULE: HEAVY CHAIN OF FAB DOMAIN OF MONOCLONAL ANTIBODY S304; COMPND 23 CHAIN: H; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 7; COMPND 26 MOLECULE: SPIKE PROTEIN S1; COMPND 27 CHAIN: R; COMPND 28 FRAGMENT: RECEPTOR BINDING DOMAIN (UNP RESIDUES 328-531); COMPND 29 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN,SPIKE GLYCOPROTEIN; COMPND 30 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 27 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 29 MOL_ID: 5; SOURCE 30 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 31 ORGANISM_COMMON: HUMAN; SOURCE 32 ORGANISM_TAXID: 9606; SOURCE 33 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 34 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 35 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 36 MOL_ID: 6; SOURCE 37 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 38 ORGANISM_COMMON: HUMAN; SOURCE 39 ORGANISM_TAXID: 9606; SOURCE 40 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 41 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 42 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 43 MOL_ID: 7; SOURCE 44 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 45 2; SOURCE 46 ORGANISM_COMMON: 2019-NCOV; SOURCE 47 ORGANISM_TAXID: 2697049; SOURCE 48 GENE: S, 2; SOURCE 49 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 50 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 51 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS COVID-19, SARS-COV-2, NEUTRALIZING MONOCLONAL ANTIBODY, VIRAL KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.SNELL,N.CZUDNOCHOWSKI,L.E.ROSEN,J.C.NIX,D.CORTI,D.VEESLER,Y.J.PARK, AUTHOR 2 A.C.WALLS,M.A.TORTORICI,E.CAMERONI,D.PINTO,M.BELTRAMELLO,SEATTLE AUTHOR 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 18-OCT-23 7JX3 1 AUTHOR REVDAT 3 27-JAN-21 7JX3 1 COMPND REVDAT 2 25-NOV-20 7JX3 1 JRNL REVDAT 1 14-OCT-20 7JX3 0 JRNL AUTH L.PICCOLI,Y.J.PARK,M.A.TORTORICI,N.CZUDNOCHOWSKI,A.C.WALLS, JRNL AUTH 2 M.BELTRAMELLO,C.SILACCI-FREGNI,D.PINTO,L.E.ROSEN,J.E.BOWEN, JRNL AUTH 3 O.J.ACTON,S.JACONI,B.GUARINO,A.MINOLA,F.ZATTA,N.SPRUGASCI, JRNL AUTH 4 J.BASSI,A.PETER,A.DE MARCO,J.C.NIX,F.MELE,S.JOVIC, JRNL AUTH 5 B.F.RODRIGUEZ,S.V.GUPTA,F.JIN,G.PIUMATTI,G.LO PRESTI, JRNL AUTH 6 A.F.PELLANDA,M.BIGGIOGERO,M.TARKOWSKI,M.S.PIZZUTO, JRNL AUTH 7 E.CAMERONI,C.HAVENAR-DAUGHTON,M.SMITHEY,D.HONG,V.LEPORI, JRNL AUTH 8 E.ALBANESE,A.CESCHI,E.BERNASCONI,L.ELZI,P.FERRARI,C.GARZONI, JRNL AUTH 9 A.RIVA,G.SNELL,F.SALLUSTO,K.FINK,H.W.VIRGIN,A.LANZAVECCHIA, JRNL AUTH10 D.CORTI,D.VEESLER JRNL TITL MAPPING NEUTRALIZING AND IMMUNODOMINANT SITES ON THE JRNL TITL 2 SARS-COV-2 SPIKE RECEPTOR-BINDING DOMAIN BY STRUCTURE-GUIDED JRNL TITL 3 HIGH-RESOLUTION SEROLOGY. JRNL REF CELL V. 183 1024 2020 JRNL REFN ISSN 1097-4172 JRNL PMID 32991844 JRNL DOI 10.1016/J.CELL.2020.09.037 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 52027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2586 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.4120 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : -1.91000 REMARK 3 B33 (A**2) : 0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.972 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.367 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.439 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 53.058 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11793 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 10432 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16069 ; 1.398 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 24365 ; 1.223 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1504 ; 8.101 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 511 ;37.603 ;22.877 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1833 ;12.949 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;22.273 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1561 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 13295 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2433 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 213 REMARK 3 ORIGIN FOR THE GROUP (A): -5.226 -19.080 11.171 REMARK 3 T TENSOR REMARK 3 T11: 0.0278 T22: 0.7144 REMARK 3 T33: 0.0910 T12: 0.0403 REMARK 3 T13: -0.0081 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.1155 L22: 0.5402 REMARK 3 L33: 5.5218 L12: -0.1775 REMARK 3 L13: 1.9859 L23: -0.0526 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: 0.1480 S13: -0.1981 REMARK 3 S21: 0.0769 S22: 0.1256 S23: 0.0800 REMARK 3 S31: -0.2486 S32: -0.1253 S33: -0.0611 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 228 REMARK 3 ORIGIN FOR THE GROUP (A): -13.499 -7.120 22.616 REMARK 3 T TENSOR REMARK 3 T11: 0.0969 T22: 0.7173 REMARK 3 T33: 0.1697 T12: 0.1355 REMARK 3 T13: 0.0047 T23: 0.0903 REMARK 3 L TENSOR REMARK 3 L11: 1.0687 L22: 0.9538 REMARK 3 L33: 4.4383 L12: -0.0807 REMARK 3 L13: 1.4290 L23: 1.1305 REMARK 3 S TENSOR REMARK 3 S11: -0.2464 S12: 0.0845 S13: 0.0846 REMARK 3 S21: 0.0054 S22: -0.1086 S23: 0.2116 REMARK 3 S31: -0.5134 S32: -0.5300 S33: 0.3549 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : R 332 R 527 REMARK 3 ORIGIN FOR THE GROUP (A): 21.812 -15.176 56.042 REMARK 3 T TENSOR REMARK 3 T11: 0.2925 T22: 0.3843 REMARK 3 T33: 0.0798 T12: 0.0623 REMARK 3 T13: -0.1181 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 3.7858 L22: 1.9627 REMARK 3 L33: 2.9834 L12: -0.2109 REMARK 3 L13: -1.8157 L23: 0.2599 REMARK 3 S TENSOR REMARK 3 S11: 0.1429 S12: 0.0563 S13: 0.1501 REMARK 3 S21: 0.2348 S22: -0.0821 S23: -0.0084 REMARK 3 S31: -0.2141 S32: -0.0027 S33: -0.0608 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 227 REMARK 3 ORIGIN FOR THE GROUP (A): 55.365 -47.695 29.526 REMARK 3 T TENSOR REMARK 3 T11: 0.2723 T22: 0.7755 REMARK 3 T33: 0.1179 T12: 0.0817 REMARK 3 T13: -0.0137 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 1.2165 L22: 3.6592 REMARK 3 L33: 0.0930 L12: -2.0801 REMARK 3 L13: -0.3310 L23: 0.5711 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: -0.0654 S13: 0.0769 REMARK 3 S21: -0.1839 S22: 0.0072 S23: -0.1696 REMARK 3 S31: -0.0055 S32: -0.0281 S33: -0.0276 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 213 REMARK 3 ORIGIN FOR THE GROUP (A): 66.147 -43.516 43.692 REMARK 3 T TENSOR REMARK 3 T11: 0.2924 T22: 0.9009 REMARK 3 T33: 0.2555 T12: 0.1340 REMARK 3 T13: -0.0927 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 3.0404 L22: 3.6939 REMARK 3 L33: 0.4963 L12: -2.8748 REMARK 3 L13: -1.2235 L23: 1.1808 REMARK 3 S TENSOR REMARK 3 S11: -0.2248 S12: -0.3192 S13: 0.2171 REMARK 3 S21: 0.2206 S22: 0.2991 S23: -0.4769 REMARK 3 S31: 0.0994 S32: 0.1524 S33: -0.0743 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 2 H 221 REMARK 3 ORIGIN FOR THE GROUP (A): 4.817 -49.337 82.657 REMARK 3 T TENSOR REMARK 3 T11: 0.5593 T22: 0.5439 REMARK 3 T33: 0.1894 T12: -0.0646 REMARK 3 T13: -0.1990 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 0.0813 L22: 5.5716 REMARK 3 L33: 1.8084 L12: 0.1631 REMARK 3 L13: -0.0947 L23: -3.1644 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: 0.0559 S13: -0.0833 REMARK 3 S21: -0.1688 S22: 0.1969 S23: 0.3375 REMARK 3 S31: 0.1260 S32: -0.1869 S33: -0.2006 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): 17.574 -48.242 95.129 REMARK 3 T TENSOR REMARK 3 T11: 0.5222 T22: 0.4275 REMARK 3 T33: 0.1411 T12: -0.0966 REMARK 3 T13: -0.1723 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 0.1636 L22: 5.6138 REMARK 3 L33: 0.6968 L12: 0.3949 REMARK 3 L13: -0.2374 L23: -1.8519 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: -0.0530 S13: -0.1365 REMARK 3 S21: 0.1395 S22: -0.2461 S23: -0.2168 REMARK 3 S31: -0.0729 S32: 0.1068 S33: 0.1653 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7JX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55237 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 47.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.19900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 2.41800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: PDB ENTRY 6M0J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16.2% W/V PEG4000, 0.09 M SODIUM REMARK 280 CITRATE, PH 6.0, 0.18 M AMMONIUM ACETATE, 0.02 M POTASSIUM REMARK 280 ACETATE, 0.01 MES, PH 6, 1.5% V/V PENTAERYTHRITOL ETHOXYLATE (15/ REMARK 280 4 EO/OH), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.77000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.89000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.77000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 63.89000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, D, C, L, H, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS B 214 REMARK 465 LYS A 143 REMARK 465 SER A 144 REMARK 465 THR A 145 REMARK 465 SER A 146 REMARK 465 SER A 229 REMARK 465 CYS A 230 REMARK 465 GLU D 214 REMARK 465 CYS D 215 REMARK 465 SER D 216 REMARK 465 SER C 228 REMARK 465 CYS C 229 REMARK 465 GLU H 1 REMARK 465 ARG R 328 REMARK 465 PHE R 329 REMARK 465 PRO R 330 REMARK 465 ASN R 331 REMARK 465 SER R 530 REMARK 465 THR R 531 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 52 -22.74 61.56 REMARK 500 SER B 53 -26.45 -143.58 REMARK 500 SER B 95 -139.34 54.34 REMARK 500 SER B 114 95.04 -68.56 REMARK 500 ASN B 138 80.62 46.34 REMARK 500 ASN B 152 -7.83 70.94 REMARK 500 ALA A 16 -167.34 -76.28 REMARK 500 THR A 174 -41.30 -139.73 REMARK 500 THR A 205 -36.64 -130.08 REMARK 500 ASN A 211 74.84 -108.65 REMARK 500 LYS D 16 -147.46 -100.79 REMARK 500 ASP D 52 -47.22 73.46 REMARK 500 ASN D 53 13.57 -151.61 REMARK 500 GLU D 86 90.48 -63.30 REMARK 500 ASP D 155 -63.99 55.95 REMARK 500 SER D 156 -14.91 -144.68 REMARK 500 LYS D 160 -35.32 -130.38 REMARK 500 ASN D 174 -12.19 65.73 REMARK 500 LYS C 142 -118.82 -138.56 REMARK 500 SER C 143 -146.79 51.61 REMARK 500 SER C 145 37.04 -77.14 REMARK 500 THR C 173 -39.73 -133.30 REMARK 500 ILE L 2 77.82 51.69 REMARK 500 ALA L 51 -29.03 64.40 REMARK 500 SER L 52 -17.66 -143.87 REMARK 500 LYS L 170 -52.26 -129.85 REMARK 500 LYS H 64 118.36 -37.88 REMARK 500 PRO H 209 -4.55 -59.61 REMARK 500 ASN H 211 18.80 54.62 REMARK 500 THR R 333 51.79 39.41 REMARK 500 PRO R 337 48.98 -77.27 REMARK 500 ASN R 422 -57.50 -124.98 REMARK 500 ASN R 448 74.64 -109.22 REMARK 500 ASN R 481 26.14 48.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA C 32 TRP C 33 147.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 7JX3 B 1 214 PDB 7JX3 7JX3 1 214 DBREF 7JX3 A 1 230 PDB 7JX3 7JX3 1 230 DBREF 7JX3 D 1 216 PDB 7JX3 7JX3 1 216 DBREF 7JX3 C 1 229 PDB 7JX3 7JX3 1 229 DBREF 7JX3 L 1 215 PDB 7JX3 7JX3 1 215 DBREF 7JX3 H 1 223 PDB 7JX3 7JX3 1 223 DBREF 7JX3 R 328 531 UNP P0DTC2 SPIKE_SARS2 328 531 SEQRES 1 B 214 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 B 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 B 214 GLN THR VAL SER SER THR SER LEU ALA TRP TYR GLN GLN SEQRES 4 B 214 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 B 214 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 B 214 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 B 214 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 B 214 HIS ASP THR SER LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 B 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 B 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 B 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 B 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 B 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 B 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 B 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 B 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 B 214 PHE ASN ARG GLY GLU CYS SEQRES 1 A 230 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 A 230 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 A 230 TYR PRO PHE THR SER TYR GLY ILE SER TRP VAL ARG GLN SEQRES 4 A 230 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 A 230 THR TYR ASN GLY ASN THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 A 230 GLY ARG VAL THR MET THR THR ASP THR SER THR THR THR SEQRES 7 A 230 GLY TYR MET GLU LEU ARG ARG LEU ARG SER ASP ASP THR SEQRES 8 A 230 ALA VAL TYR TYR CYS ALA ARG ASP TYR THR ARG GLY ALA SEQRES 9 A 230 TRP PHE GLY GLU SER LEU ILE GLY GLY PHE ASP ASN TRP SEQRES 10 A 230 GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR SEQRES 11 A 230 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 A 230 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 A 230 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 A 230 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 A 230 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 A 230 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 A 230 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 A 230 ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 D 216 ASN PHE MET LEU THR GLN PRO HIS SER VAL SER GLU SER SEQRES 2 D 216 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 D 216 GLY SER ILE ALA SER ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 D 216 ARG PRO GLY SER SER PRO THR THR VAL ILE TYR GLU ASP SEQRES 5 D 216 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 D 216 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 D 216 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 D 216 GLN SER TYR ASP SER SER ASN GLN VAL PHE GLY GLY GLY SEQRES 9 D 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 D 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 D 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 D 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 D 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 D 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 D 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 D 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 D 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 C 229 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 C 229 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 229 PHE THR PHE SER ASN ALA TRP MET SER TRP VAL ARG GLN SEQRES 4 C 229 ALA PRO GLY LYS GLY LEU GLU TRP VAL GLY ARG ILE LYS SEQRES 5 C 229 SER LYS THR ASP GLY GLY THR THR ASP TYR ALA ALA PRO SEQRES 6 C 229 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 C 229 ASN THR LEU TYR LEU GLN MET ASN SER LEU LYS THR GLU SEQRES 8 C 229 ASP THR ALA VAL TYR TYR CYS THR THR GLY SER GLU THR SEQRES 9 C 229 TYR TYR TYR ASP SER SER GLY PRO PHE ASP TYR TRP GLY SEQRES 10 C 229 GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 C 229 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 C 229 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 C 229 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 C 229 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 C 229 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 C 229 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 C 229 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 C 229 LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 L 215 ASP ILE GLU MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 215 ALA VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 215 GLN SER ILE GLY SER TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 215 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 215 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 215 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 215 GLN PRO GLU ASP PHE ALA ILE TYR TYR CYS GLN GLN SER SEQRES 8 L 215 TYR VAL SER PRO THR TYR THR PHE GLY PRO GLY THR LYS SEQRES 9 L 215 VAL ASP ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 223 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 223 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 223 PHE THR PHE SER SER TYR ASP MET HIS TRP VAL ARG GLN SEQRES 4 H 223 THR THR GLY LYS GLY LEU GLU TRP VAL SER THR ILE GLY SEQRES 5 H 223 THR ALA GLY ASP THR TYR TYR PRO ASP SER VAL LYS GLY SEQRES 6 H 223 ARG PHE THR ILE SER ARG GLU ASP ALA LYS ASN SER LEU SEQRES 7 H 223 TYR LEU GLN MET ASN SER LEU ARG ALA GLY ASP THR ALA SEQRES 8 H 223 VAL TYR TYR CYS ALA ARG GLY ASP SER SER GLY TYR TYR SEQRES 9 H 223 TYR TYR PHE ASP TYR TRP GLY GLN GLY THR LEU LEU THR SEQRES 10 H 223 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 223 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 223 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 223 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 223 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 223 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 223 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 223 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 H 223 SER CYS SEQRES 1 R 204 ARG PHE PRO ASN ILE THR ASN LEU CYS PRO PHE GLY GLU SEQRES 2 R 204 VAL PHE ASN ALA THR ARG PHE ALA SER VAL TYR ALA TRP SEQRES 3 R 204 ASN ARG LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SER SEQRES 4 R 204 VAL LEU TYR ASN SER ALA SER PHE SER THR PHE LYS CYS SEQRES 5 R 204 TYR GLY VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE SEQRES 6 R 204 THR ASN VAL TYR ALA ASP SER PHE VAL ILE ARG GLY ASP SEQRES 7 R 204 GLU VAL ARG GLN ILE ALA PRO GLY GLN THR GLY LYS ILE SEQRES 8 R 204 ALA ASP TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY SEQRES 9 R 204 CYS VAL ILE ALA TRP ASN SER ASN ASN LEU ASP SER LYS SEQRES 10 R 204 VAL GLY GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG SEQRES 11 R 204 LYS SER ASN LEU LYS PRO PHE GLU ARG ASP ILE SER THR SEQRES 12 R 204 GLU ILE TYR GLN ALA GLY SER THR PRO CYS ASN GLY VAL SEQRES 13 R 204 GLU GLY PHE ASN CYS TYR PHE PRO LEU GLN SER TYR GLY SEQRES 14 R 204 PHE GLN PRO THR ASN GLY VAL GLY TYR GLN PRO TYR ARG SEQRES 15 R 204 VAL VAL VAL LEU SER PHE GLU LEU LEU HIS ALA PRO ALA SEQRES 16 R 204 THR VAL CYS GLY PRO LYS LYS SER THR HET NAG R 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 8 NAG C8 H15 N O6 FORMUL 9 HOH *25(H2 O) HELIX 1 AA1 GLU B 80 PHE B 84 5 5 HELIX 2 AA2 SER B 121 LYS B 126 1 6 HELIX 3 AA3 LYS B 183 LYS B 188 1 6 HELIX 4 AA4 PRO A 28 TYR A 32 5 5 HELIX 5 AA5 GLN A 62 GLN A 65 5 4 HELIX 6 AA6 ARG A 87 THR A 91 5 5 HELIX 7 AA7 SER A 170 ALA A 172 5 3 HELIX 8 AA8 SER A 201 LEU A 203 5 3 HELIX 9 AA9 SER D 28 ASN D 32 5 5 HELIX 10 AB1 LYS D 82 GLU D 86 5 5 HELIX 11 AB2 SER D 125 ALA D 131 1 7 HELIX 12 AB3 GLU D 187 HIS D 192 1 6 HELIX 13 AB4 SER C 53 GLY C 57 5 5 HELIX 14 AB5 ASP C 76 LYS C 78 5 3 HELIX 15 AB6 LYS C 89 THR C 93 5 5 HELIX 16 AB7 SER C 102 TYR C 106 5 5 HELIX 17 AB8 SER C 169 ALA C 171 5 3 HELIX 18 AB9 SER C 200 LEU C 202 5 3 HELIX 19 AC1 GLN L 79 PHE L 83 5 5 HELIX 20 AC2 SER L 122 SER L 128 1 7 HELIX 21 AC3 LYS L 184 LYS L 189 1 6 HELIX 22 AC4 THR H 28 TYR H 32 5 5 HELIX 23 AC5 ASP H 73 LYS H 75 5 3 HELIX 24 AC6 ARG H 86 THR H 90 5 5 HELIX 25 AC7 SER H 134 LYS H 136 5 3 HELIX 26 AC8 SER H 163 ALA H 165 5 3 HELIX 27 AC9 SER H 194 LEU H 196 5 3 HELIX 28 AD1 LYS H 208 ASN H 211 5 4 HELIX 29 AD2 PHE R 338 ASN R 343 1 6 HELIX 30 AD3 SER R 349 TRP R 353 5 5 HELIX 31 AD4 TYR R 365 TYR R 369 5 5 HELIX 32 AD5 SER R 383 ASN R 388 5 6 HELIX 33 AD6 ASP R 405 ILE R 410 5 6 HELIX 34 AD7 GLY R 416 ASN R 422 1 7 HELIX 35 AD8 SER R 438 SER R 443 1 6 HELIX 36 AD9 GLY R 502 TYR R 505 5 4 SHEET 1 AA1 3 LEU B 4 SER B 7 0 SHEET 2 AA1 3 ALA B 19 VAL B 29 -1 O ARG B 24 N THR B 5 SHEET 3 AA1 3 PHE B 63 ILE B 76 -1 O PHE B 72 N CYS B 23 SHEET 1 AA2 6 THR B 10 LEU B 13 0 SHEET 2 AA2 6 THR B 102 ILE B 106 1 O LYS B 103 N LEU B 11 SHEET 3 AA2 6 VAL B 86 GLN B 91 -1 N TYR B 87 O THR B 102 SHEET 4 AA2 6 LEU B 34 GLN B 39 -1 N GLN B 39 O VAL B 86 SHEET 5 AA2 6 ARG B 46 TYR B 50 -1 O LEU B 48 N TRP B 36 SHEET 6 AA2 6 SER B 54 ARG B 55 -1 O SER B 54 N TYR B 50 SHEET 1 AA3 4 THR B 10 LEU B 13 0 SHEET 2 AA3 4 THR B 102 ILE B 106 1 O LYS B 103 N LEU B 11 SHEET 3 AA3 4 VAL B 86 GLN B 91 -1 N TYR B 87 O THR B 102 SHEET 4 AA3 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 91 SHEET 1 AA4 4 SER B 114 PHE B 118 0 SHEET 2 AA4 4 THR B 129 PHE B 139 -1 O VAL B 133 N PHE B 118 SHEET 3 AA4 4 TYR B 173 SER B 182 -1 O TYR B 173 N PHE B 139 SHEET 4 AA4 4 SER B 159 VAL B 163 -1 N SER B 162 O SER B 176 SHEET 1 AA5 4 ALA B 153 LEU B 154 0 SHEET 2 AA5 4 LYS B 145 VAL B 150 -1 N VAL B 150 O ALA B 153 SHEET 3 AA5 4 VAL B 191 THR B 197 -1 O THR B 197 N LYS B 145 SHEET 4 AA5 4 VAL B 205 ASN B 210 -1 O PHE B 209 N TYR B 192 SHEET 1 AA6 4 GLN A 3 GLN A 6 0 SHEET 2 AA6 4 SER A 17 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AA6 4 THR A 78 ARG A 84 -1 O MET A 81 N VAL A 20 SHEET 4 AA6 4 VAL A 68 ASP A 73 -1 N ASP A 73 O THR A 78 SHEET 1 AA7 6 GLU A 10 LYS A 12 0 SHEET 2 AA7 6 THR A 121 VAL A 125 1 O THR A 124 N LYS A 12 SHEET 3 AA7 6 ALA A 92 ASP A 99 -1 N TYR A 94 O THR A 121 SHEET 4 AA7 6 GLY A 33 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA7 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA7 6 THR A 58 TYR A 60 -1 O ASN A 59 N TRP A 50 SHEET 1 AA8 4 GLU A 10 LYS A 12 0 SHEET 2 AA8 4 THR A 121 VAL A 125 1 O THR A 124 N LYS A 12 SHEET 3 AA8 4 ALA A 92 ASP A 99 -1 N TYR A 94 O THR A 121 SHEET 4 AA8 4 PHE A 114 TRP A 117 -1 O ASN A 116 N ARG A 98 SHEET 1 AA9 4 SER A 134 LEU A 138 0 SHEET 2 AA9 4 THR A 149 TYR A 159 -1 O GLY A 153 N LEU A 138 SHEET 3 AA9 4 TYR A 190 PRO A 199 -1 O LEU A 192 N VAL A 156 SHEET 4 AA9 4 VAL A 177 THR A 179 -1 N HIS A 178 O VAL A 195 SHEET 1 AB1 4 SER A 134 LEU A 138 0 SHEET 2 AB1 4 THR A 149 TYR A 159 -1 O GLY A 153 N LEU A 138 SHEET 3 AB1 4 TYR A 190 PRO A 199 -1 O LEU A 192 N VAL A 156 SHEET 4 AB1 4 VAL A 183 LEU A 184 -1 N VAL A 183 O SER A 191 SHEET 1 AB2 3 THR A 165 TRP A 168 0 SHEET 2 AB2 3 ILE A 209 HIS A 214 -1 O ASN A 211 N SER A 167 SHEET 3 AB2 3 THR A 219 LYS A 224 -1 O THR A 219 N HIS A 214 SHEET 1 AB3 4 LEU D 4 THR D 5 0 SHEET 2 AB3 4 THR D 17 ARG D 24 -1 O THR D 23 N THR D 5 SHEET 3 AB3 4 SER D 73 SER D 79 -1 O ALA D 74 N CYS D 22 SHEET 4 AB3 4 PHE D 63 ASP D 68 -1 N ASP D 68 O SER D 73 SHEET 1 AB4 5 SER D 9 GLU D 12 0 SHEET 2 AB4 5 THR D 105 VAL D 109 1 O LYS D 106 N VAL D 10 SHEET 3 AB4 5 ASP D 88 ASP D 95 -1 N TYR D 89 O THR D 105 SHEET 4 AB4 5 GLN D 35 GLN D 39 -1 N GLN D 35 O GLN D 92 SHEET 5 AB4 5 THR D 46 ILE D 49 -1 O VAL D 48 N TRP D 36 SHEET 1 AB5 4 SER D 9 GLU D 12 0 SHEET 2 AB5 4 THR D 105 VAL D 109 1 O LYS D 106 N VAL D 10 SHEET 3 AB5 4 ASP D 88 ASP D 95 -1 N TYR D 89 O THR D 105 SHEET 4 AB5 4 ASN D 98 PHE D 101 -1 O ASN D 98 N ASP D 95 SHEET 1 AB6 4 SER D 118 PHE D 122 0 SHEET 2 AB6 4 ALA D 134 PHE D 143 -1 O LEU D 139 N THR D 120 SHEET 3 AB6 4 TYR D 176 LEU D 184 -1 O SER D 180 N CYS D 138 SHEET 4 AB6 4 VAL D 163 THR D 165 -1 N GLU D 164 O TYR D 181 SHEET 1 AB7 4 SER D 118 PHE D 122 0 SHEET 2 AB7 4 ALA D 134 PHE D 143 -1 O LEU D 139 N THR D 120 SHEET 3 AB7 4 TYR D 176 LEU D 184 -1 O SER D 180 N CYS D 138 SHEET 4 AB7 4 SER D 169 LYS D 170 -1 N SER D 169 O ALA D 177 SHEET 1 AB8 4 SER D 157 VAL D 159 0 SHEET 2 AB8 4 THR D 149 ALA D 154 -1 O ALA D 154 N SER D 157 SHEET 3 AB8 4 TYR D 195 HIS D 201 -1 O THR D 200 N THR D 149 SHEET 4 AB8 4 SER D 204 VAL D 210 -1 O VAL D 206 N VAL D 199 SHEET 1 AB9 4 GLN C 3 SER C 7 0 SHEET 2 AB9 4 LEU C 18 SER C 25 -1 O SER C 21 N SER C 7 SHEET 3 AB9 4 THR C 80 MET C 85 -1 O LEU C 81 N CYS C 22 SHEET 4 AB9 4 PHE C 70 ASP C 75 -1 N THR C 71 O GLN C 84 SHEET 1 AC1 6 LEU C 11 VAL C 12 0 SHEET 2 AC1 6 THR C 120 VAL C 124 1 O THR C 123 N VAL C 12 SHEET 3 AC1 6 ALA C 94 THR C 100 -1 N TYR C 96 O THR C 120 SHEET 4 AC1 6 MET C 34 GLN C 39 -1 N VAL C 37 O TYR C 97 SHEET 5 AC1 6 LEU C 45 ILE C 51 -1 O GLU C 46 N ARG C 38 SHEET 6 AC1 6 THR C 60 TYR C 62 -1 O ASP C 61 N ARG C 50 SHEET 1 AC2 4 LEU C 11 VAL C 12 0 SHEET 2 AC2 4 THR C 120 VAL C 124 1 O THR C 123 N VAL C 12 SHEET 3 AC2 4 ALA C 94 THR C 100 -1 N TYR C 96 O THR C 120 SHEET 4 AC2 4 TYR C 115 TRP C 116 -1 O TYR C 115 N THR C 100 SHEET 1 AC3 4 SER C 133 LEU C 137 0 SHEET 2 AC3 4 THR C 148 TYR C 158 -1 O LYS C 156 N SER C 133 SHEET 3 AC3 4 TYR C 189 PRO C 198 -1 O TYR C 189 N TYR C 158 SHEET 4 AC3 4 VAL C 176 THR C 178 -1 N HIS C 177 O VAL C 194 SHEET 1 AC4 4 SER C 133 LEU C 137 0 SHEET 2 AC4 4 THR C 148 TYR C 158 -1 O LYS C 156 N SER C 133 SHEET 3 AC4 4 TYR C 189 PRO C 198 -1 O TYR C 189 N TYR C 158 SHEET 4 AC4 4 VAL C 182 LEU C 183 -1 N VAL C 182 O SER C 190 SHEET 1 AC5 3 THR C 164 TRP C 167 0 SHEET 2 AC5 3 ILE C 208 HIS C 213 -1 O ASN C 210 N SER C 166 SHEET 3 AC5 3 THR C 218 LYS C 223 -1 O LYS C 222 N CYS C 209 SHEET 1 AC6 4 MET L 4 SER L 7 0 SHEET 2 AC6 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AC6 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AC6 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 AC7 6 SER L 10 ALA L 13 0 SHEET 2 AC7 6 THR L 103 ILE L 107 1 O ASP L 106 N LEU L 11 SHEET 3 AC7 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 105 SHEET 4 AC7 6 LEU L 33 GLN L 38 -1 N ASN L 34 O GLN L 89 SHEET 5 AC7 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 AC7 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AC8 6 VAL L 93 SER L 94 0 SHEET 2 AC8 6 THR R 376 TYR R 380 -1 O CYS R 379 N SER L 94 SHEET 3 AC8 6 GLY R 431 ASN R 437 -1 O GLY R 431 N TYR R 380 SHEET 4 AC8 6 PRO R 507 PHE R 515 -1 O VAL R 511 N ILE R 434 SHEET 5 AC8 6 VAL R 395 ARG R 403 -1 N ASP R 398 O VAL R 512 SHEET 6 AC8 6 ASN R 354 ILE R 358 -1 N ILE R 358 O VAL R 395 SHEET 1 AC9 4 SER L 115 PHE L 119 0 SHEET 2 AC9 4 THR L 130 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AC9 4 TYR L 174 SER L 183 -1 O LEU L 176 N LEU L 137 SHEET 4 AC9 4 SER L 160 VAL L 164 -1 N SER L 163 O SER L 177 SHEET 1 AD1 4 ALA L 154 LEU L 155 0 SHEET 2 AD1 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AD1 4 VAL L 192 THR L 198 -1 O THR L 198 N LYS L 146 SHEET 4 AD1 4 VAL L 206 ASN L 211 -1 O LYS L 208 N CYS L 195 SHEET 1 AD2 4 GLN H 3 SER H 7 0 SHEET 2 AD2 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AD2 4 SER H 77 MET H 82 -1 O LEU H 78 N CYS H 22 SHEET 4 AD2 4 PHE H 67 GLU H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AD3 6 LEU H 11 VAL H 12 0 SHEET 2 AD3 6 THR H 114 VAL H 118 1 O THR H 117 N VAL H 12 SHEET 3 AD3 6 ALA H 91 SER H 101 -1 N TYR H 93 O THR H 114 SHEET 4 AD3 6 ASP H 33 THR H 40 -1 N VAL H 37 O TYR H 94 SHEET 5 AD3 6 GLY H 44 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 AD3 6 THR H 57 TYR H 58 -1 O TYR H 58 N THR H 50 SHEET 1 AD4 4 LEU H 11 VAL H 12 0 SHEET 2 AD4 4 THR H 114 VAL H 118 1 O THR H 117 N VAL H 12 SHEET 3 AD4 4 ALA H 91 SER H 101 -1 N TYR H 93 O THR H 114 SHEET 4 AD4 4 TYR H 104 TRP H 110 -1 O TYR H 109 N ARG H 97 SHEET 1 AD5 4 SER H 127 LEU H 131 0 SHEET 2 AD5 4 THR H 142 TYR H 152 -1 O LEU H 148 N PHE H 129 SHEET 3 AD5 4 TYR H 183 PRO H 192 -1 O TYR H 183 N TYR H 152 SHEET 4 AD5 4 VAL H 170 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 AD6 4 THR H 138 SER H 139 0 SHEET 2 AD6 4 THR H 142 TYR H 152 -1 O THR H 142 N SER H 139 SHEET 3 AD6 4 TYR H 183 PRO H 192 -1 O TYR H 183 N TYR H 152 SHEET 4 AD6 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 AD7 3 THR H 158 TRP H 161 0 SHEET 2 AD7 3 ILE H 202 HIS H 207 -1 O ASN H 204 N SER H 160 SHEET 3 AD7 3 THR H 212 LYS H 217 -1 O VAL H 214 N VAL H 205 SHEET 1 AD8 3 CYS R 361 VAL R 362 0 SHEET 2 AD8 3 VAL R 524 CYS R 525 1 O CYS R 525 N CYS R 361 SHEET 3 AD8 3 CYS R 391 PHE R 392 -1 N PHE R 392 O VAL R 524 SHEET 1 AD9 2 LEU R 452 ARG R 454 0 SHEET 2 AD9 2 LEU R 492 SER R 494 -1 O GLN R 493 N TYR R 453 SHEET 1 AE1 2 TYR R 473 GLN R 474 0 SHEET 2 AE1 2 CYS R 488 TYR R 489 -1 O TYR R 489 N TYR R 473 SSBOND 1 CYS B 23 CYS B 89 1555 1555 2.07 SSBOND 2 CYS B 134 CYS B 194 1555 1555 2.05 SSBOND 3 CYS A 22 CYS A 96 1555 1555 2.02 SSBOND 4 CYS A 154 CYS A 210 1555 1555 2.03 SSBOND 5 CYS D 22 CYS D 91 1555 1555 2.03 SSBOND 6 CYS D 138 CYS D 197 1555 1555 2.04 SSBOND 7 CYS C 22 CYS C 98 1555 1555 2.04 SSBOND 8 CYS C 153 CYS C 209 1555 1555 2.02 SSBOND 9 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 10 CYS L 135 CYS L 195 1555 1555 2.02 SSBOND 11 CYS L 215 CYS H 223 1555 1555 2.03 SSBOND 12 CYS H 22 CYS H 95 1555 1555 2.04 SSBOND 13 CYS H 147 CYS H 203 1555 1555 2.03 SSBOND 14 CYS R 336 CYS R 361 1555 1555 2.04 SSBOND 15 CYS R 379 CYS R 432 1555 1555 2.04 SSBOND 16 CYS R 391 CYS R 525 1555 1555 2.05 SSBOND 17 CYS R 480 CYS R 488 1555 1555 2.03 LINK ND2 ASN R 343 C1 NAG R 601 1555 1555 1.56 CISPEP 1 SER B 7 PRO B 8 0 -10.02 CISPEP 2 TYR B 140 PRO B 141 0 -0.64 CISPEP 3 PHE A 160 PRO A 161 0 -12.25 CISPEP 4 GLU A 162 PRO A 163 0 -10.72 CISPEP 5 TYR D 144 PRO D 145 0 5.42 CISPEP 6 PHE C 159 PRO C 160 0 -14.65 CISPEP 7 GLU C 161 PRO C 162 0 -1.98 CISPEP 8 SER L 7 PRO L 8 0 -5.84 CISPEP 9 SER L 94 PRO L 95 0 1.59 CISPEP 10 TYR L 141 PRO L 142 0 -4.37 CISPEP 11 PHE H 153 PRO H 154 0 -17.09 CISPEP 12 GLU H 155 PRO H 156 0 -1.52 CRYST1 79.540 127.780 192.280 90.00 96.66 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012572 0.000000 0.001467 0.00000 SCALE2 0.000000 0.007826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005236 0.00000