HEADER VIRAL PROTEIN 26-AUG-20 7JX6 TITLE STRUCTURE OF THE SARS-COV-2 ORF8 ENCODED ACCESSORY PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF8 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 8,NS8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3-RIL KEYWDS IMMUNOGLOBULIN-LIKE, DISULFIDE-LINKED DIMER, VIRAL PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR P.D.HALL,C.A.NELSON,D.H.FREMONT,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 2 INFECTIOUS DISEASES (CSGID) REVDAT 1 23-SEP-20 7JX6 0 JRNL AUTH C.A.NELSON,P.D.HALL,D.H.FREMONT JRNL TITL CRYSTAL STRUCTURE OF THE SARS-COV-2 ORF8 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0200 - 3.2100 0.99 3796 154 0.1804 0.1994 REMARK 3 2 3.2100 - 2.5500 1.00 3612 148 0.2030 0.2258 REMARK 3 3 2.5500 - 2.2300 1.00 3550 143 0.2217 0.2897 REMARK 3 4 2.2300 - 2.0200 1.00 3508 142 0.2139 0.2716 REMARK 3 5 2.0200 - 1.8800 1.00 3508 142 0.2257 0.2498 REMARK 3 6 1.8800 - 1.7700 1.00 3513 144 0.2278 0.2629 REMARK 3 7 1.7700 - 1.6800 1.00 3470 140 0.2336 0.3017 REMARK 3 8 1.6800 - 1.6100 0.98 3412 140 0.2672 0.2888 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29522 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 42.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.05651 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 1.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CHLORIDE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.03250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.32350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.32350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.04875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.32350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.32350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.01625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.32350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.32350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 126.04875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.32350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.32350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.01625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.03250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 386 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 63 REMARK 465 GLU B 64 REMARK 465 ALA B 65 REMARK 465 GLY B 66 REMARK 465 SER B 67 REMARK 465 LYS B 68 REMARK 465 SER B 69 REMARK 465 PRO B 70 REMARK 465 ILE B 71 REMARK 465 GLN B 72 REMARK 465 TYR B 73 REMARK 465 ILE B 74 REMARK 465 ASP B 75 REMARK 465 ILE B 76 REMARK 465 GLY B 77 REMARK 465 ASN B 78 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 420 O HOH A 430 2.09 REMARK 500 O HOH B 314 O HOH B 390 2.10 REMARK 500 O HOH A 396 O HOH B 337 2.10 REMARK 500 O HOH B 313 O HOH B 417 2.15 REMARK 500 O HOH A 361 O HOH A 396 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 414 O HOH A 414 7555 1.91 REMARK 500 O HOH B 314 O HOH B 314 7645 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 41 -146.42 -123.51 REMARK 500 GLU A 64 -62.30 -123.27 REMARK 500 TYR A 79 -68.15 -106.97 REMARK 500 CYS A 90 105.57 -57.06 REMARK 500 HIS B 40 -19.88 80.81 REMARK 500 CYS B 61 -51.12 65.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 429 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 430 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 431 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 432 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH B 427 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B 428 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B 429 DISTANCE = 7.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 O REMARK 620 2 CYS A 37 O 85.1 REMARK 620 3 HOH A 372 O 116.0 157.5 REMARK 620 4 HOH A 408 O 120.2 124.0 53.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 92 OE1 REMARK 620 2 HOH A 339 O 85.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 O REMARK 620 2 HOH A 328 O 115.6 REMARK 620 3 HOH A 405 O 91.1 109.4 REMARK 620 4 HOH A 422 O 114.5 109.7 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 113 O REMARK 620 2 HOH B 341 O 120.3 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP51007 RELATED DB: TARGETTRACK DBREF 7JX6 A 18 121 UNP P0DTC8 NS8_SARS2 18 121 DBREF 7JX6 B 18 121 UNP P0DTC8 NS8_SARS2 18 121 SEQRES 1 A 104 GLN GLU CYS SER LEU GLN SER CYS THR GLN HIS GLN PRO SEQRES 2 A 104 TYR VAL VAL ASP ASP PRO CYS PRO ILE HIS PHE TYR SER SEQRES 3 A 104 LYS TRP TYR ILE ARG VAL GLY ALA ARG LYS SER ALA PRO SEQRES 4 A 104 LEU ILE GLU LEU CYS VAL ASP GLU ALA GLY SER LYS SER SEQRES 5 A 104 PRO ILE GLN TYR ILE ASP ILE GLY ASN TYR THR VAL SER SEQRES 6 A 104 CYS LEU PRO PHE THR ILE ASN CYS GLN GLU PRO LYS LEU SEQRES 7 A 104 GLY SER LEU VAL VAL ARG CYS SER PHE TYR GLU ASP PHE SEQRES 8 A 104 LEU GLU TYR HIS ASP VAL ARG VAL VAL LEU ASP PHE ILE SEQRES 1 B 104 GLN GLU CYS SER LEU GLN SER CYS THR GLN HIS GLN PRO SEQRES 2 B 104 TYR VAL VAL ASP ASP PRO CYS PRO ILE HIS PHE TYR SER SEQRES 3 B 104 LYS TRP TYR ILE ARG VAL GLY ALA ARG LYS SER ALA PRO SEQRES 4 B 104 LEU ILE GLU LEU CYS VAL ASP GLU ALA GLY SER LYS SER SEQRES 5 B 104 PRO ILE GLN TYR ILE ASP ILE GLY ASN TYR THR VAL SER SEQRES 6 B 104 CYS LEU PRO PHE THR ILE ASN CYS GLN GLU PRO LYS LEU SEQRES 7 B 104 GLY SER LEU VAL VAL ARG CYS SER PHE TYR GLU ASP PHE SEQRES 8 B 104 LEU GLU TYR HIS ASP VAL ARG VAL VAL LEU ASP PHE ILE HET NA A 201 1 HET NA A 202 1 HET NA A 203 1 HET NA B 201 1 HETNAM NA SODIUM ION FORMUL 3 NA 4(NA 1+) FORMUL 7 HOH *261(H2 O) SHEET 1 AA1 5 GLU A 19 CYS A 25 0 SHEET 2 AA1 5 HIS A 112 PHE A 120 1 O ARG A 115 N SER A 21 SHEET 3 AA1 5 GLY A 96 SER A 103 -1 N CYS A 102 O HIS A 112 SHEET 4 AA1 5 TYR A 42 VAL A 49 -1 N TYR A 46 O VAL A 99 SHEET 5 AA1 5 LEU A 57 GLU A 59 -1 O ILE A 58 N ILE A 47 SHEET 1 AA2 3 PRO A 30 VAL A 32 0 SHEET 2 AA2 3 THR A 87 ASN A 89 -1 O ILE A 88 N TYR A 31 SHEET 3 AA2 3 THR A 80 SER A 82 -1 N VAL A 81 O THR A 87 SHEET 1 AA3 2 CYS A 61 ASP A 63 0 SHEET 2 AA3 2 LYS A 68 PRO A 70 -1 O SER A 69 N VAL A 62 SHEET 1 AA4 5 CYS B 20 CYS B 25 0 SHEET 2 AA4 5 HIS B 112 PHE B 120 1 O ASP B 119 N GLN B 23 SHEET 3 AA4 5 LEU B 98 SER B 103 -1 N CYS B 102 O HIS B 112 SHEET 4 AA4 5 TYR B 42 ARG B 48 -1 N TYR B 42 O SER B 103 SHEET 5 AA4 5 LEU B 57 GLU B 59 -1 O ILE B 58 N ILE B 47 SHEET 1 AA5 3 PRO B 30 VAL B 32 0 SHEET 2 AA5 3 THR B 87 ASN B 89 -1 O ILE B 88 N TYR B 31 SHEET 3 AA5 3 THR B 80 SER B 82 -1 N SER B 82 O THR B 87 SSBOND 1 CYS A 20 CYS B 20 1555 1555 2.02 SSBOND 2 CYS A 25 CYS A 90 1555 1555 2.04 SSBOND 3 CYS A 37 CYS A 102 1555 1555 2.03 SSBOND 4 CYS A 61 CYS A 83 1555 1555 2.03 SSBOND 5 CYS B 25 CYS B 90 1555 1555 2.04 SSBOND 6 CYS B 37 CYS B 102 1555 1555 2.02 SSBOND 7 CYS B 61 CYS B 83 1555 1555 2.05 LINK O ASP A 35 NA NA A 201 1555 1555 2.70 LINK O CYS A 37 NA NA A 201 1555 1555 2.74 LINK OE1 GLU A 92 NA NA A 202 1555 1555 2.38 LINK O ASP A 107 NA NA A 203 1555 1555 2.78 LINK NA NA A 201 O HOH A 372 1555 7555 3.06 LINK NA NA A 201 O HOH A 408 1555 7555 2.94 LINK NA NA A 202 O HOH A 339 1555 1555 2.93 LINK NA NA A 203 O HOH A 328 1555 1555 2.79 LINK NA NA A 203 O HOH A 405 1555 1555 2.67 LINK NA NA A 203 O HOH A 422 1555 1555 3.00 LINK O ASP B 113 NA NA B 201 1555 1555 2.98 LINK NA NA B 201 O HOH B 341 1555 1555 2.48 CISPEP 1 LEU A 84 PRO A 85 0 -7.35 CISPEP 2 LEU B 84 PRO B 85 0 -9.28 CRYST1 50.647 50.647 168.065 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019745 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005950 0.00000