data_7KER # _entry.id 7KER # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.342 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 7KER WWPDB D_1000252366 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7KER _pdbx_database_status.recvd_initial_deposition_date 2020-10-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Smith, C.A.' 1 ? 'Vakulenko, S.B.' 2 ? 'Stewart, N.K.' 3 ? 'Toth, M.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Infect Dis.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2373-8227 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first 1164 _citation.page_last 1176 _citation.title 'Inhibition of the Clostridioides difficile Class D beta-Lactamase CDD-1 by Avibactam.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acsinfecdis.0c00714 _citation.pdbx_database_id_PubMed 33390002 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stewart, N.K.' 1 ? primary 'Toth, M.' 2 ? primary 'Stasyuk, A.' 3 ? primary 'Lee, M.' 4 ? primary 'Smith, C.A.' 5 ? primary 'Vakulenko, S.B.' 6 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7KER _cell.details ? _cell.formula_units_Z ? _cell.length_a 124.184 _cell.length_a_esd ? _cell.length_b 124.184 _cell.length_b_esd ? _cell.length_c 124.184 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KER _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Beta-lactamase 36043.055 1 3.5.2.6 'K238A, K244A' ? 'Class D beta-lactamase' 2 non-polymer syn '(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide' 267.260 1 ? ? ? ? 3 non-polymer syn '(2S,5R)-7-oxo-6-(sulfooxy)-1,6-diazabicyclo[3.2.1]octane-2-carboxamide' 265.244 1 ? ? ? ? 4 non-polymer syn '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 238.305 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 6 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 7 water nat water 18.015 140 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CDD-1 beta-lactamase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MKRKKNFIWIAILLVGVVMVMYYAVKKHNDINQKTDKNYIKSELNKSKIKNNDKNKKESVNIVDYSDCFEGISGGAIFCN TKNKEYNIYNKELIETRRSPCSTF(KCX)IVSTLIGLEKGVINSKESVMGYDGTDYPNKNWNKNLSLEEAFKESCVWYYK KLINKVDAKSVQNILDDLKYGNCDISEWEGDLKNGKGHLNGFWLESSLQISPKEQVQTMAKIFEGDTNFKKEHINILRDI MAIDVNDANINVYGKTGTGFDEKNKRVDAWFVGMLEREGDTYYFAIKSDDSNKEITGPKVKEIAINIIKKYYSVRE ; _entity_poly.pdbx_seq_one_letter_code_can ;MKRKKNFIWIAILLVGVVMVMYYAVKKHNDINQKTDKNYIKSELNKSKIKNNDKNKKESVNIVDYSDCFEGISGGAIFCN TKNKEYNIYNKELIETRRSPCSTFKIVSTLIGLEKGVINSKESVMGYDGTDYPNKNWNKNLSLEEAFKESCVWYYKKLIN KVDAKSVQNILDDLKYGNCDISEWEGDLKNGKGHLNGFWLESSLQISPKEQVQTMAKIFEGDTNFKKEHINILRDIMAID VNDANINVYGKTGTGFDEKNKRVDAWFVGMLEREGDTYYFAIKSDDSNKEITGPKVKEIAINIIKKYYSVRE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 ARG n 1 4 LYS n 1 5 LYS n 1 6 ASN n 1 7 PHE n 1 8 ILE n 1 9 TRP n 1 10 ILE n 1 11 ALA n 1 12 ILE n 1 13 LEU n 1 14 LEU n 1 15 VAL n 1 16 GLY n 1 17 VAL n 1 18 VAL n 1 19 MET n 1 20 VAL n 1 21 MET n 1 22 TYR n 1 23 TYR n 1 24 ALA n 1 25 VAL n 1 26 LYS n 1 27 LYS n 1 28 HIS n 1 29 ASN n 1 30 ASP n 1 31 ILE n 1 32 ASN n 1 33 GLN n 1 34 LYS n 1 35 THR n 1 36 ASP n 1 37 LYS n 1 38 ASN n 1 39 TYR n 1 40 ILE n 1 41 LYS n 1 42 SER n 1 43 GLU n 1 44 LEU n 1 45 ASN n 1 46 LYS n 1 47 SER n 1 48 LYS n 1 49 ILE n 1 50 LYS n 1 51 ASN n 1 52 ASN n 1 53 ASP n 1 54 LYS n 1 55 ASN n 1 56 LYS n 1 57 LYS n 1 58 GLU n 1 59 SER n 1 60 VAL n 1 61 ASN n 1 62 ILE n 1 63 VAL n 1 64 ASP n 1 65 TYR n 1 66 SER n 1 67 ASP n 1 68 CYS n 1 69 PHE n 1 70 GLU n 1 71 GLY n 1 72 ILE n 1 73 SER n 1 74 GLY n 1 75 GLY n 1 76 ALA n 1 77 ILE n 1 78 PHE n 1 79 CYS n 1 80 ASN n 1 81 THR n 1 82 LYS n 1 83 ASN n 1 84 LYS n 1 85 GLU n 1 86 TYR n 1 87 ASN n 1 88 ILE n 1 89 TYR n 1 90 ASN n 1 91 LYS n 1 92 GLU n 1 93 LEU n 1 94 ILE n 1 95 GLU n 1 96 THR n 1 97 ARG n 1 98 ARG n 1 99 SER n 1 100 PRO n 1 101 CYS n 1 102 SER n 1 103 THR n 1 104 PHE n 1 105 KCX n 1 106 ILE n 1 107 VAL n 1 108 SER n 1 109 THR n 1 110 LEU n 1 111 ILE n 1 112 GLY n 1 113 LEU n 1 114 GLU n 1 115 LYS n 1 116 GLY n 1 117 VAL n 1 118 ILE n 1 119 ASN n 1 120 SER n 1 121 LYS n 1 122 GLU n 1 123 SER n 1 124 VAL n 1 125 MET n 1 126 GLY n 1 127 TYR n 1 128 ASP n 1 129 GLY n 1 130 THR n 1 131 ASP n 1 132 TYR n 1 133 PRO n 1 134 ASN n 1 135 LYS n 1 136 ASN n 1 137 TRP n 1 138 ASN n 1 139 LYS n 1 140 ASN n 1 141 LEU n 1 142 SER n 1 143 LEU n 1 144 GLU n 1 145 GLU n 1 146 ALA n 1 147 PHE n 1 148 LYS n 1 149 GLU n 1 150 SER n 1 151 CYS n 1 152 VAL n 1 153 TRP n 1 154 TYR n 1 155 TYR n 1 156 LYS n 1 157 LYS n 1 158 LEU n 1 159 ILE n 1 160 ASN n 1 161 LYS n 1 162 VAL n 1 163 ASP n 1 164 ALA n 1 165 LYS n 1 166 SER n 1 167 VAL n 1 168 GLN n 1 169 ASN n 1 170 ILE n 1 171 LEU n 1 172 ASP n 1 173 ASP n 1 174 LEU n 1 175 LYS n 1 176 TYR n 1 177 GLY n 1 178 ASN n 1 179 CYS n 1 180 ASP n 1 181 ILE n 1 182 SER n 1 183 GLU n 1 184 TRP n 1 185 GLU n 1 186 GLY n 1 187 ASP n 1 188 LEU n 1 189 LYS n 1 190 ASN n 1 191 GLY n 1 192 LYS n 1 193 GLY n 1 194 HIS n 1 195 LEU n 1 196 ASN n 1 197 GLY n 1 198 PHE n 1 199 TRP n 1 200 LEU n 1 201 GLU n 1 202 SER n 1 203 SER n 1 204 LEU n 1 205 GLN n 1 206 ILE n 1 207 SER n 1 208 PRO n 1 209 LYS n 1 210 GLU n 1 211 GLN n 1 212 VAL n 1 213 GLN n 1 214 THR n 1 215 MET n 1 216 ALA n 1 217 LYS n 1 218 ILE n 1 219 PHE n 1 220 GLU n 1 221 GLY n 1 222 ASP n 1 223 THR n 1 224 ASN n 1 225 PHE n 1 226 LYS n 1 227 LYS n 1 228 GLU n 1 229 HIS n 1 230 ILE n 1 231 ASN n 1 232 ILE n 1 233 LEU n 1 234 ARG n 1 235 ASP n 1 236 ILE n 1 237 MET n 1 238 ALA n 1 239 ILE n 1 240 ASP n 1 241 VAL n 1 242 ASN n 1 243 ASP n 1 244 ALA n 1 245 ASN n 1 246 ILE n 1 247 ASN n 1 248 VAL n 1 249 TYR n 1 250 GLY n 1 251 LYS n 1 252 THR n 1 253 GLY n 1 254 THR n 1 255 GLY n 1 256 PHE n 1 257 ASP n 1 258 GLU n 1 259 LYS n 1 260 ASN n 1 261 LYS n 1 262 ARG n 1 263 VAL n 1 264 ASP n 1 265 ALA n 1 266 TRP n 1 267 PHE n 1 268 VAL n 1 269 GLY n 1 270 MET n 1 271 LEU n 1 272 GLU n 1 273 ARG n 1 274 GLU n 1 275 GLY n 1 276 ASP n 1 277 THR n 1 278 TYR n 1 279 TYR n 1 280 PHE n 1 281 ALA n 1 282 ILE n 1 283 LYS n 1 284 SER n 1 285 ASP n 1 286 ASP n 1 287 SER n 1 288 ASN n 1 289 LYS n 1 290 GLU n 1 291 ILE n 1 292 THR n 1 293 GLY n 1 294 PRO n 1 295 LYS n 1 296 VAL n 1 297 LYS n 1 298 GLU n 1 299 ILE n 1 300 ALA n 1 301 ILE n 1 302 ASN n 1 303 ILE n 1 304 ILE n 1 305 LYS n 1 306 LYS n 1 307 TYR n 1 308 TYR n 1 309 SER n 1 310 VAL n 1 311 ARG n 1 312 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 312 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'blaR1_4, blaR1_1, E5F39_11445, SAMEA2239407_03320, SAMEA3374989_01677' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridioides difficile' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1496 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A160YKM3_CLODI _struct_ref.pdbx_db_accession A0A160YKM3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKRKKNFIWIAILLVGVVMVMYYAVKKHNDINQKTDKNYIKSELNKSKIKNNDKNKKESVNIVDYSDCFEGISGGAIFCN TKNKEYNIYNKELIETRRSPCSTFKIVSTLIGLEKGVINSKESVMGYDGTDYPNKNWNKNLSLEEAFKESCVWYYKKLIN KVDAKSVQNILDDLKYGNCDISEWEGDLKNGKGHLNGFWLESSLQISPKEQVQTMAKIFEGDTNFKKEHINILRDIMKID VNDKNINVYGKTGTGFDEKNKRVDAWFVGMLEREGDTYYFAIKSDDSNKEITGPKVKEIAINIIKKYYSVRE ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7KER _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 312 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A160YKM3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 312 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 312 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7KER ALA A 238 ? UNP A0A160YKM3 LYS 238 'engineered mutation' 238 1 1 7KER ALA A 244 ? UNP A0A160YKM3 LYS 244 'engineered mutation' 244 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EPE non-polymer . '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' HEPES 'C8 H18 N2 O4 S' 238.305 FYG non-polymer . '(2S,5R)-7-oxo-6-(sulfooxy)-1,6-diazabicyclo[3.2.1]octane-2-carboxamide' Avibactam 'C7 H11 N3 O6 S' 265.244 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KCX 'L-peptide linking' n 'LYSINE NZ-CARBOXYLIC ACID' ? 'C7 H14 N2 O4' 190.197 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 NXL non-polymer . '(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide' 'avibactam, bound form; NXL104, bound form' 'C7 H13 N3 O6 S' 267.260 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7KER _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 278 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES, pH 7.0, 2.4 M ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-06-23 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7KER _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.93 _reflns.d_resolution_low 39.3 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 25361 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 21.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.186 _reflns.pdbx_Rpim_I_all 0.040 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.93 _reflns_shell.d_res_low 1.97 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1645 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.386 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.751 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 91.430 _refine.B_iso_mean 35.7738 _refine.B_iso_min 19.120 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7KER _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9300 _refine.ls_d_res_low 37.4400 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 25200 _refine.ls_number_reflns_R_free 1286 _refine.ls_number_reflns_R_work 23914 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.9800 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1720 _refine.ls_R_factor_R_free 0.1965 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1706 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.5400 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.9300 _refine_hist.d_res_low 37.4400 _refine_hist.number_atoms_solvent 140 _refine_hist.number_atoms_total 2236 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 251 _refine_hist.pdbx_B_iso_mean_ligand 52.70 _refine_hist.pdbx_B_iso_mean_solvent 42.04 _refine_hist.pdbx_number_atoms_protein 2003 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 93 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 2186 'X-RAY DIFFRACTION' ? f_angle_d 1.265 ? ? 2974 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.193 ? ? 338 'X-RAY DIFFRACTION' ? f_chiral_restr 0.066 ? ? 318 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 376 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.9300 2.0100 2723 . 128 2595 100.0000 . . . 0.2721 0.0000 0.2139 . . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.0100 2.1000 2741 . 144 2597 100.0000 . . . 0.2287 0.0000 0.1860 . . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.1000 2.2100 2748 . 129 2619 100.0000 . . . 0.2355 0.0000 0.1825 . . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.2100 2.3500 2751 . 140 2611 100.0000 . . . 0.2337 0.0000 0.1809 . . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.3500 2.5300 2767 . 149 2618 100.0000 . . . 0.2485 0.0000 0.1892 . . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.5300 2.7800 2783 . 154 2629 100.0000 . . . 0.2370 0.0000 0.1895 . . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.7800 3.1800 2810 . 137 2673 100.0000 . . . 0.2380 0.0000 0.1885 . . . . . . . 9 . . . 'X-RAY DIFFRACTION' 3.1900 4.0100 2850 . 142 2708 100.0000 . . . 0.1526 0.0000 0.1477 . . . . . . . 9 . . . 'X-RAY DIFFRACTION' 4.0100 37.4400 3027 . 163 2864 100.0000 . . . 0.1653 0.0000 0.1588 . . . . . . . 9 . . . # _struct.entry_id 7KER _struct.title 'avibactam-CDD-1 45 minute complex' _struct.pdbx_descriptor 'Beta-lactamase (E.C.3.5.2.6)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7KER _struct_keywords.text 'antibiotic resistance, mutant, Gram-positive, inhibitor, HYDROLASE, HYDROLASE-INHIBITOR complex' _struct_keywords.pdbx_keywords HYDROLASE/INHIBITOR # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 6 ? K N N 7 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 65 ? GLU A 70 ? TYR A 65 GLU A 70 1 ? 6 HELX_P HELX_P2 AA2 ASN A 90 ? GLU A 95 ? ASN A 90 GLU A 95 1 ? 6 HELX_P HELX_P3 AA3 PRO A 100 ? THR A 103 ? PRO A 100 THR A 103 5 ? 4 HELX_P HELX_P4 AA4 PHE A 104 ? LYS A 115 ? PHE A 104 LYS A 115 1 ? 12 HELX_P HELX_P5 AA5 ASN A 134 ? ASN A 138 ? ASN A 134 ASN A 138 5 ? 5 HELX_P HELX_P6 AA6 SER A 142 ? SER A 150 ? SER A 142 SER A 150 1 ? 9 HELX_P HELX_P7 AA7 CYS A 151 ? ASN A 160 ? CYS A 151 ASN A 160 1 ? 10 HELX_P HELX_P8 AA8 ASP A 163 ? LYS A 175 ? ASP A 163 LYS A 175 1 ? 13 HELX_P HELX_P9 AA9 ASP A 187 ? GLY A 191 ? ASP A 187 GLY A 191 5 ? 5 HELX_P HELX_P10 AB1 SER A 207 ? GLU A 220 ? SER A 207 GLU A 220 1 ? 14 HELX_P HELX_P11 AB2 LYS A 226 ? MET A 237 ? LYS A 226 MET A 237 1 ? 12 HELX_P HELX_P12 AB3 THR A 292 ? TYR A 308 ? THR A 292 TYR A 308 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A SER 102 OG ? ? ? 1_555 B NXL . CAN ? ? A SER 102 A NXL 401 1_555 ? ? ? ? ? ? ? 1.417 ? ? covale2 covale both ? A PHE 104 C ? ? ? 1_555 A KCX 105 N ? ? A PHE 104 A KCX 105 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale3 covale both ? A KCX 105 C ? ? ? 1_555 A ILE 106 N ? ? A KCX 105 A ILE 106 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 60 ? ILE A 62 ? VAL A 60 ILE A 62 AA1 2 GLU A 85 ? TYR A 89 ? GLU A 85 TYR A 89 AA1 3 GLY A 74 ? ASN A 80 ? GLY A 74 ASN A 80 AA1 4 ASP A 276 ? SER A 284 ? ASP A 276 SER A 284 AA1 5 ARG A 262 ? ARG A 273 ? ARG A 262 ARG A 273 AA1 6 ASN A 247 ? ASP A 257 ? ASN A 247 ASP A 257 AA1 7 ALA A 238 ? ILE A 239 ? ALA A 238 ILE A 239 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASN A 61 ? N ASN A 61 O TYR A 86 ? O TYR A 86 AA1 2 3 O ASN A 87 ? O ASN A 87 N PHE A 78 ? N PHE A 78 AA1 3 4 N CYS A 79 ? N CYS A 79 O TYR A 279 ? O TYR A 279 AA1 4 5 O SER A 284 ? O SER A 284 N ALA A 265 ? N ALA A 265 AA1 5 6 O ARG A 262 ? O ARG A 262 N ASP A 257 ? N ASP A 257 AA1 6 7 O VAL A 248 ? O VAL A 248 N ILE A 239 ? N ILE A 239 # _atom_sites.entry_id 7KER _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.008053 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008053 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008053 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 LYS 2 2 ? ? ? A . n A 1 3 ARG 3 3 ? ? ? A . n A 1 4 LYS 4 4 ? ? ? A . n A 1 5 LYS 5 5 ? ? ? A . n A 1 6 ASN 6 6 ? ? ? A . n A 1 7 PHE 7 7 ? ? ? A . n A 1 8 ILE 8 8 ? ? ? A . n A 1 9 TRP 9 9 ? ? ? A . n A 1 10 ILE 10 10 ? ? ? A . n A 1 11 ALA 11 11 ? ? ? A . n A 1 12 ILE 12 12 ? ? ? A . n A 1 13 LEU 13 13 ? ? ? A . n A 1 14 LEU 14 14 ? ? ? A . n A 1 15 VAL 15 15 ? ? ? A . n A 1 16 GLY 16 16 ? ? ? A . n A 1 17 VAL 17 17 ? ? ? A . n A 1 18 VAL 18 18 ? ? ? A . n A 1 19 MET 19 19 ? ? ? A . n A 1 20 VAL 20 20 ? ? ? A . n A 1 21 MET 21 21 ? ? ? A . n A 1 22 TYR 22 22 ? ? ? A . n A 1 23 TYR 23 23 ? ? ? A . n A 1 24 ALA 24 24 ? ? ? A . n A 1 25 VAL 25 25 ? ? ? A . n A 1 26 LYS 26 26 ? ? ? A . n A 1 27 LYS 27 27 ? ? ? A . n A 1 28 HIS 28 28 ? ? ? A . n A 1 29 ASN 29 29 ? ? ? A . n A 1 30 ASP 30 30 ? ? ? A . n A 1 31 ILE 31 31 ? ? ? A . n A 1 32 ASN 32 32 ? ? ? A . n A 1 33 GLN 33 33 ? ? ? A . n A 1 34 LYS 34 34 ? ? ? A . n A 1 35 THR 35 35 ? ? ? A . n A 1 36 ASP 36 36 ? ? ? A . n A 1 37 LYS 37 37 ? ? ? A . n A 1 38 ASN 38 38 ? ? ? A . n A 1 39 TYR 39 39 ? ? ? A . n A 1 40 ILE 40 40 ? ? ? A . n A 1 41 LYS 41 41 ? ? ? A . n A 1 42 SER 42 42 ? ? ? A . n A 1 43 GLU 43 43 ? ? ? A . n A 1 44 LEU 44 44 ? ? ? A . n A 1 45 ASN 45 45 ? ? ? A . n A 1 46 LYS 46 46 ? ? ? A . n A 1 47 SER 47 47 ? ? ? A . n A 1 48 LYS 48 48 ? ? ? A . n A 1 49 ILE 49 49 ? ? ? A . n A 1 50 LYS 50 50 ? ? ? A . n A 1 51 ASN 51 51 ? ? ? A . n A 1 52 ASN 52 52 ? ? ? A . n A 1 53 ASP 53 53 ? ? ? A . n A 1 54 LYS 54 54 ? ? ? A . n A 1 55 ASN 55 55 ? ? ? A . n A 1 56 LYS 56 56 ? ? ? A . n A 1 57 LYS 57 57 ? ? ? A . n A 1 58 GLU 58 58 ? ? ? A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 CYS 79 79 79 CYS CYS A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 CYS 101 101 101 CYS CYS A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 KCX 105 105 105 KCX KCX A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 MET 125 125 125 MET MET A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 TYR 132 132 132 TYR TYR A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 ASN 136 136 136 ASN ASN A . n A 1 137 TRP 137 137 137 TRP TRP A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 PHE 147 147 147 PHE PHE A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 SER 150 150 150 SER SER A . n A 1 151 CYS 151 151 151 CYS CYS A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 TRP 153 153 153 TRP TRP A . n A 1 154 TYR 154 154 154 TYR TYR A . n A 1 155 TYR 155 155 155 TYR TYR A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 ILE 159 159 159 ILE ILE A . n A 1 160 ASN 160 160 160 ASN ASN A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 ASP 163 163 163 ASP ASP A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 GLN 168 168 168 GLN GLN A . n A 1 169 ASN 169 169 169 ASN ASN A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 ASP 172 172 172 ASP ASP A . n A 1 173 ASP 173 173 173 ASP ASP A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 LYS 175 175 175 LYS LYS A . n A 1 176 TYR 176 176 176 TYR TYR A . n A 1 177 GLY 177 177 177 GLY GLY A . n A 1 178 ASN 178 178 178 ASN ASN A . n A 1 179 CYS 179 179 179 CYS CYS A . n A 1 180 ASP 180 180 180 ASP ASP A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 TRP 184 184 184 TRP TRP A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 LYS 189 189 189 LYS LYS A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 GLY 191 191 191 GLY GLY A . n A 1 192 LYS 192 192 192 LYS LYS A . n A 1 193 GLY 193 193 193 GLY GLY A . n A 1 194 HIS 194 194 194 HIS HIS A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 ASN 196 196 196 ASN ASN A . n A 1 197 GLY 197 197 197 GLY GLY A . n A 1 198 PHE 198 198 198 PHE PHE A . n A 1 199 TRP 199 199 199 TRP TRP A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 SER 202 202 202 SER SER A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 GLN 205 205 205 GLN GLN A . n A 1 206 ILE 206 206 206 ILE ILE A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 PRO 208 208 208 PRO PRO A . n A 1 209 LYS 209 209 209 LYS LYS A . n A 1 210 GLU 210 210 210 GLU GLU A . n A 1 211 GLN 211 211 211 GLN GLN A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 GLN 213 213 213 GLN GLN A . n A 1 214 THR 214 214 214 THR THR A . n A 1 215 MET 215 215 215 MET MET A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 LYS 217 217 217 LYS LYS A . n A 1 218 ILE 218 218 218 ILE ILE A . n A 1 219 PHE 219 219 219 PHE PHE A . n A 1 220 GLU 220 220 220 GLU GLU A . n A 1 221 GLY 221 221 221 GLY GLY A . n A 1 222 ASP 222 222 222 ASP ASP A . n A 1 223 THR 223 223 223 THR THR A . n A 1 224 ASN 224 224 224 ASN ASN A . n A 1 225 PHE 225 225 225 PHE PHE A . n A 1 226 LYS 226 226 226 LYS LYS A . n A 1 227 LYS 227 227 227 LYS LYS A . n A 1 228 GLU 228 228 228 GLU GLU A . n A 1 229 HIS 229 229 229 HIS HIS A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 ASN 231 231 231 ASN ASN A . n A 1 232 ILE 232 232 232 ILE ILE A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 ARG 234 234 234 ARG ARG A . n A 1 235 ASP 235 235 235 ASP ASP A . n A 1 236 ILE 236 236 236 ILE ILE A . n A 1 237 MET 237 237 237 MET MET A . n A 1 238 ALA 238 238 238 ALA ALA A . n A 1 239 ILE 239 239 239 ILE ILE A . n A 1 240 ASP 240 240 240 ASP ASP A . n A 1 241 VAL 241 241 241 VAL VAL A . n A 1 242 ASN 242 242 242 ASN ASN A . n A 1 243 ASP 243 243 243 ASP ASP A . n A 1 244 ALA 244 244 244 ALA ALA A . n A 1 245 ASN 245 245 245 ASN ASN A . n A 1 246 ILE 246 246 246 ILE ILE A . n A 1 247 ASN 247 247 247 ASN ASN A . n A 1 248 VAL 248 248 248 VAL VAL A . n A 1 249 TYR 249 249 249 TYR TYR A . n A 1 250 GLY 250 250 250 GLY GLY A . n A 1 251 LYS 251 251 251 LYS LYS A . n A 1 252 THR 252 252 252 THR THR A . n A 1 253 GLY 253 253 253 GLY GLY A . n A 1 254 THR 254 254 254 THR THR A . n A 1 255 GLY 255 255 255 GLY GLY A . n A 1 256 PHE 256 256 256 PHE PHE A . n A 1 257 ASP 257 257 257 ASP ASP A . n A 1 258 GLU 258 258 258 GLU GLU A . n A 1 259 LYS 259 259 259 LYS LYS A . n A 1 260 ASN 260 260 260 ASN ASN A . n A 1 261 LYS 261 261 261 LYS LYS A . n A 1 262 ARG 262 262 262 ARG ARG A . n A 1 263 VAL 263 263 263 VAL VAL A . n A 1 264 ASP 264 264 264 ASP ASP A . n A 1 265 ALA 265 265 265 ALA ALA A . n A 1 266 TRP 266 266 266 TRP TRP A . n A 1 267 PHE 267 267 267 PHE PHE A . n A 1 268 VAL 268 268 268 VAL VAL A . n A 1 269 GLY 269 269 269 GLY GLY A . n A 1 270 MET 270 270 270 MET MET A . n A 1 271 LEU 271 271 271 LEU LEU A . n A 1 272 GLU 272 272 272 GLU GLU A . n A 1 273 ARG 273 273 273 ARG ARG A . n A 1 274 GLU 274 274 274 GLU GLU A . n A 1 275 GLY 275 275 275 GLY GLY A . n A 1 276 ASP 276 276 276 ASP ASP A . n A 1 277 THR 277 277 277 THR THR A . n A 1 278 TYR 278 278 278 TYR TYR A . n A 1 279 TYR 279 279 279 TYR TYR A . n A 1 280 PHE 280 280 280 PHE PHE A . n A 1 281 ALA 281 281 281 ALA ALA A . n A 1 282 ILE 282 282 282 ILE ILE A . n A 1 283 LYS 283 283 283 LYS LYS A . n A 1 284 SER 284 284 284 SER SER A . n A 1 285 ASP 285 285 285 ASP ASP A . n A 1 286 ASP 286 286 286 ASP ASP A . n A 1 287 SER 287 287 287 SER SER A . n A 1 288 ASN 288 288 288 ASN ASN A . n A 1 289 LYS 289 289 289 LYS LYS A . n A 1 290 GLU 290 290 290 GLU GLU A . n A 1 291 ILE 291 291 291 ILE ILE A . n A 1 292 THR 292 292 292 THR THR A . n A 1 293 GLY 293 293 293 GLY GLY A . n A 1 294 PRO 294 294 294 PRO PRO A . n A 1 295 LYS 295 295 295 LYS LYS A . n A 1 296 VAL 296 296 296 VAL VAL A . n A 1 297 LYS 297 297 297 LYS LYS A . n A 1 298 GLU 298 298 298 GLU GLU A . n A 1 299 ILE 299 299 299 ILE ILE A . n A 1 300 ALA 300 300 300 ALA ALA A . n A 1 301 ILE 301 301 301 ILE ILE A . n A 1 302 ASN 302 302 302 ASN ASN A . n A 1 303 ILE 303 303 303 ILE ILE A . n A 1 304 ILE 304 304 304 ILE ILE A . n A 1 305 LYS 305 305 305 LYS LYS A . n A 1 306 LYS 306 306 306 LYS LYS A . n A 1 307 TYR 307 307 307 TYR TYR A . n A 1 308 TYR 308 308 308 TYR TYR A . n A 1 309 SER 309 309 309 SER SER A . n A 1 310 VAL 310 310 ? ? ? A . n A 1 311 ARG 311 311 ? ? ? A . n A 1 312 GLU 312 312 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL 1 401 401 NXL NXL A . C 3 FYG 1 402 402 FYG ABM A . D 4 EPE 1 403 401 EPE EPE A . E 5 SO4 1 404 1 SO4 SO4 A . F 5 SO4 1 405 2 SO4 SO4 A . G 5 SO4 1 406 3 SO4 SO4 A . H 5 SO4 1 407 4 SO4 SO4 A . I 5 SO4 1 408 5 SO4 SO4 A . J 6 MPD 1 409 1 MPD MPD A . K 7 HOH 1 501 128 HOH HOH A . K 7 HOH 2 502 7 HOH HOH A . K 7 HOH 3 503 41 HOH HOH A . K 7 HOH 4 504 52 HOH HOH A . K 7 HOH 5 505 102 HOH HOH A . K 7 HOH 6 506 150 HOH HOH A . K 7 HOH 7 507 148 HOH HOH A . K 7 HOH 8 508 133 HOH HOH A . K 7 HOH 9 509 81 HOH HOH A . K 7 HOH 10 510 84 HOH HOH A . K 7 HOH 11 511 65 HOH HOH A . K 7 HOH 12 512 142 HOH HOH A . K 7 HOH 13 513 151 HOH HOH A . K 7 HOH 14 514 111 HOH HOH A . K 7 HOH 15 515 13 HOH HOH A . K 7 HOH 16 516 43 HOH HOH A . K 7 HOH 17 517 114 HOH HOH A . K 7 HOH 18 518 18 HOH HOH A . K 7 HOH 19 519 4 HOH HOH A . K 7 HOH 20 520 48 HOH HOH A . K 7 HOH 21 521 115 HOH HOH A . K 7 HOH 22 522 139 HOH HOH A . K 7 HOH 23 523 17 HOH HOH A . K 7 HOH 24 524 58 HOH HOH A . K 7 HOH 25 525 140 HOH HOH A . K 7 HOH 26 526 91 HOH HOH A . K 7 HOH 27 527 46 HOH HOH A . K 7 HOH 28 528 39 HOH HOH A . K 7 HOH 29 529 22 HOH HOH A . K 7 HOH 30 530 109 HOH HOH A . K 7 HOH 31 531 79 HOH HOH A . K 7 HOH 32 532 35 HOH HOH A . K 7 HOH 33 533 92 HOH HOH A . K 7 HOH 34 534 129 HOH HOH A . K 7 HOH 35 535 54 HOH HOH A . K 7 HOH 36 536 116 HOH HOH A . K 7 HOH 37 537 93 HOH HOH A . K 7 HOH 38 538 10 HOH HOH A . K 7 HOH 39 539 24 HOH HOH A . K 7 HOH 40 540 26 HOH HOH A . K 7 HOH 41 541 85 HOH HOH A . K 7 HOH 42 542 75 HOH HOH A . K 7 HOH 43 543 8 HOH HOH A . K 7 HOH 44 544 37 HOH HOH A . K 7 HOH 45 545 112 HOH HOH A . K 7 HOH 46 546 50 HOH HOH A . K 7 HOH 47 547 16 HOH HOH A . K 7 HOH 48 548 19 HOH HOH A . K 7 HOH 49 549 32 HOH HOH A . K 7 HOH 50 550 101 HOH HOH A . K 7 HOH 51 551 29 HOH HOH A . K 7 HOH 52 552 122 HOH HOH A . K 7 HOH 53 553 31 HOH HOH A . K 7 HOH 54 554 12 HOH HOH A . K 7 HOH 55 555 49 HOH HOH A . K 7 HOH 56 556 5 HOH HOH A . K 7 HOH 57 557 14 HOH HOH A . K 7 HOH 58 558 98 HOH HOH A . K 7 HOH 59 559 36 HOH HOH A . K 7 HOH 60 560 42 HOH HOH A . K 7 HOH 61 561 33 HOH HOH A . K 7 HOH 62 562 66 HOH HOH A . K 7 HOH 63 563 55 HOH HOH A . K 7 HOH 64 564 21 HOH HOH A . K 7 HOH 65 565 124 HOH HOH A . K 7 HOH 66 566 120 HOH HOH A . K 7 HOH 67 567 108 HOH HOH A . K 7 HOH 68 568 96 HOH HOH A . K 7 HOH 69 569 117 HOH HOH A . K 7 HOH 70 570 105 HOH HOH A . K 7 HOH 71 571 30 HOH HOH A . K 7 HOH 72 572 57 HOH HOH A . K 7 HOH 73 573 69 HOH HOH A . K 7 HOH 74 574 63 HOH HOH A . K 7 HOH 75 575 97 HOH HOH A . K 7 HOH 76 576 27 HOH HOH A . K 7 HOH 77 577 121 HOH HOH A . K 7 HOH 78 578 100 HOH HOH A . K 7 HOH 79 579 152 HOH HOH A . K 7 HOH 80 580 78 HOH HOH A . K 7 HOH 81 581 106 HOH HOH A . K 7 HOH 82 582 9 HOH HOH A . K 7 HOH 83 583 25 HOH HOH A . K 7 HOH 84 584 87 HOH HOH A . K 7 HOH 85 585 44 HOH HOH A . K 7 HOH 86 586 94 HOH HOH A . K 7 HOH 87 587 15 HOH HOH A . K 7 HOH 88 588 89 HOH HOH A . K 7 HOH 89 589 149 HOH HOH A . K 7 HOH 90 590 67 HOH HOH A . K 7 HOH 91 591 40 HOH HOH A . K 7 HOH 92 592 132 HOH HOH A . K 7 HOH 93 593 135 HOH HOH A . K 7 HOH 94 594 119 HOH HOH A . K 7 HOH 95 595 73 HOH HOH A . K 7 HOH 96 596 61 HOH HOH A . K 7 HOH 97 597 125 HOH HOH A . K 7 HOH 98 598 51 HOH HOH A . K 7 HOH 99 599 60 HOH HOH A . K 7 HOH 100 600 53 HOH HOH A . K 7 HOH 101 601 47 HOH HOH A . K 7 HOH 102 602 3 HOH HOH A . K 7 HOH 103 603 11 HOH HOH A . K 7 HOH 104 604 99 HOH HOH A . K 7 HOH 105 605 34 HOH HOH A . K 7 HOH 106 606 68 HOH HOH A . K 7 HOH 107 607 28 HOH HOH A . K 7 HOH 108 608 131 HOH HOH A . K 7 HOH 109 609 72 HOH HOH A . K 7 HOH 110 610 23 HOH HOH A . K 7 HOH 111 611 90 HOH HOH A . K 7 HOH 112 612 113 HOH HOH A . K 7 HOH 113 613 38 HOH HOH A . K 7 HOH 114 614 59 HOH HOH A . K 7 HOH 115 615 77 HOH HOH A . K 7 HOH 116 616 144 HOH HOH A . K 7 HOH 117 617 107 HOH HOH A . K 7 HOH 118 618 143 HOH HOH A . K 7 HOH 119 619 126 HOH HOH A . K 7 HOH 120 620 130 HOH HOH A . K 7 HOH 121 621 76 HOH HOH A . K 7 HOH 122 622 153 HOH HOH A . K 7 HOH 123 623 136 HOH HOH A . K 7 HOH 124 624 146 HOH HOH A . K 7 HOH 125 625 83 HOH HOH A . K 7 HOH 126 626 110 HOH HOH A . K 7 HOH 127 627 127 HOH HOH A . K 7 HOH 128 628 147 HOH HOH A . K 7 HOH 129 629 141 HOH HOH A . K 7 HOH 130 630 71 HOH HOH A . K 7 HOH 131 631 137 HOH HOH A . K 7 HOH 132 632 138 HOH HOH A . K 7 HOH 133 633 82 HOH HOH A . K 7 HOH 134 634 56 HOH HOH A . K 7 HOH 135 635 145 HOH HOH A . K 7 HOH 136 636 80 HOH HOH A . K 7 HOH 137 637 154 HOH HOH A . K 7 HOH 138 638 6 HOH HOH A . K 7 HOH 139 639 134 HOH HOH A . K 7 HOH 140 640 74 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id KCX _pdbx_struct_mod_residue.label_seq_id 105 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id KCX _pdbx_struct_mod_residue.auth_seq_id 105 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1360 ? 1 MORE -52 ? 1 'SSA (A^2)' 11390 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 405 ? F SO4 . 2 1 A SO4 405 ? F SO4 . 3 1 A HOH 591 ? K HOH . 4 1 A HOH 634 ? K HOH . 5 1 A HOH 640 ? K HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-01-20 2 'Structure model' 1 1 2021-05-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_3908 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 5 # _pdbx_entry_details.entry_id 7KER _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 90 ? ? 69.62 75.68 2 1 CYS A 101 ? ? 51.02 -138.79 3 1 ASN A 138 ? ? -92.48 49.12 4 1 SER A 202 ? ? -140.83 -140.08 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 59 ? OG ? A SER 59 OG 2 1 Y 1 A LYS 82 ? CD ? A LYS 82 CD 3 1 Y 1 A LYS 82 ? CE ? A LYS 82 CE 4 1 Y 1 A LYS 82 ? NZ ? A LYS 82 NZ 5 1 Y 1 A LYS 84 ? CD ? A LYS 84 CD 6 1 Y 1 A LYS 84 ? CE ? A LYS 84 CE 7 1 Y 1 A LYS 84 ? NZ ? A LYS 84 NZ 8 1 Y 1 A LYS 259 ? CG ? A LYS 259 CG 9 1 Y 1 A LYS 259 ? CD ? A LYS 259 CD 10 1 Y 1 A LYS 259 ? CE ? A LYS 259 CE 11 1 Y 1 A LYS 259 ? NZ ? A LYS 259 NZ 12 1 Y 1 A GLU 274 ? CG ? A GLU 274 CG 13 1 Y 1 A GLU 274 ? CD ? A GLU 274 CD 14 1 Y 1 A GLU 274 ? OE1 ? A GLU 274 OE1 15 1 Y 1 A GLU 274 ? OE2 ? A GLU 274 OE2 16 1 N 1 A EPE 403 ? C7 ? D EPE 1 C7 17 1 N 1 A EPE 403 ? C8 ? D EPE 1 C8 18 1 N 1 A EPE 403 ? O8 ? D EPE 1 O8 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A LYS 2 ? A LYS 2 3 1 Y 1 A ARG 3 ? A ARG 3 4 1 Y 1 A LYS 4 ? A LYS 4 5 1 Y 1 A LYS 5 ? A LYS 5 6 1 Y 1 A ASN 6 ? A ASN 6 7 1 Y 1 A PHE 7 ? A PHE 7 8 1 Y 1 A ILE 8 ? A ILE 8 9 1 Y 1 A TRP 9 ? A TRP 9 10 1 Y 1 A ILE 10 ? A ILE 10 11 1 Y 1 A ALA 11 ? A ALA 11 12 1 Y 1 A ILE 12 ? A ILE 12 13 1 Y 1 A LEU 13 ? A LEU 13 14 1 Y 1 A LEU 14 ? A LEU 14 15 1 Y 1 A VAL 15 ? A VAL 15 16 1 Y 1 A GLY 16 ? A GLY 16 17 1 Y 1 A VAL 17 ? A VAL 17 18 1 Y 1 A VAL 18 ? A VAL 18 19 1 Y 1 A MET 19 ? A MET 19 20 1 Y 1 A VAL 20 ? A VAL 20 21 1 Y 1 A MET 21 ? A MET 21 22 1 Y 1 A TYR 22 ? A TYR 22 23 1 Y 1 A TYR 23 ? A TYR 23 24 1 Y 1 A ALA 24 ? A ALA 24 25 1 Y 1 A VAL 25 ? A VAL 25 26 1 Y 1 A LYS 26 ? A LYS 26 27 1 Y 1 A LYS 27 ? A LYS 27 28 1 Y 1 A HIS 28 ? A HIS 28 29 1 Y 1 A ASN 29 ? A ASN 29 30 1 Y 1 A ASP 30 ? A ASP 30 31 1 Y 1 A ILE 31 ? A ILE 31 32 1 Y 1 A ASN 32 ? A ASN 32 33 1 Y 1 A GLN 33 ? A GLN 33 34 1 Y 1 A LYS 34 ? A LYS 34 35 1 Y 1 A THR 35 ? A THR 35 36 1 Y 1 A ASP 36 ? A ASP 36 37 1 Y 1 A LYS 37 ? A LYS 37 38 1 Y 1 A ASN 38 ? A ASN 38 39 1 Y 1 A TYR 39 ? A TYR 39 40 1 Y 1 A ILE 40 ? A ILE 40 41 1 Y 1 A LYS 41 ? A LYS 41 42 1 Y 1 A SER 42 ? A SER 42 43 1 Y 1 A GLU 43 ? A GLU 43 44 1 Y 1 A LEU 44 ? A LEU 44 45 1 Y 1 A ASN 45 ? A ASN 45 46 1 Y 1 A LYS 46 ? A LYS 46 47 1 Y 1 A SER 47 ? A SER 47 48 1 Y 1 A LYS 48 ? A LYS 48 49 1 Y 1 A ILE 49 ? A ILE 49 50 1 Y 1 A LYS 50 ? A LYS 50 51 1 Y 1 A ASN 51 ? A ASN 51 52 1 Y 1 A ASN 52 ? A ASN 52 53 1 Y 1 A ASP 53 ? A ASP 53 54 1 Y 1 A LYS 54 ? A LYS 54 55 1 Y 1 A ASN 55 ? A ASN 55 56 1 Y 1 A LYS 56 ? A LYS 56 57 1 Y 1 A LYS 57 ? A LYS 57 58 1 Y 1 A GLU 58 ? A GLU 58 59 1 Y 1 A VAL 310 ? A VAL 310 60 1 Y 1 A ARG 311 ? A ARG 311 61 1 Y 1 A GLU 312 ? A GLU 312 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NXL _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NXL _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide' NXL 3 '(2S,5R)-7-oxo-6-(sulfooxy)-1,6-diazabicyclo[3.2.1]octane-2-carboxamide' FYG 4 '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' EPE 5 'SULFATE ION' SO4 6 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 7 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #