data_7LIB # _entry.id 7LIB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7LIB pdb_00007lib 10.2210/pdb7lib/pdb WWPDB D_1000254293 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7LIB _pdbx_database_status.recvd_initial_deposition_date 2021-01-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wierzbicki, M.' 1 0000-0002-9217-634X 'Nowick, J.S.' 2 0000-0002-2273-1029 'Li, X.' 3 0000-0002-3032-4255 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 60 _citation.language ? _citation.page_first 22776 _citation.page_last 22782 _citation.title 'An Improved Turn Structure for Inducing beta-Hairpin Formation in Peptides.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202105559 _citation.pdbx_database_id_PubMed 34258835 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, X.' 1 ? primary 'Sabol, A.L.' 2 ? primary 'Wierzbicki, M.' 3 ? primary 'Salveson, P.J.' 4 ? primary 'Nowick, J.S.' 5 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7LIB _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.574 _cell.length_a_esd ? _cell.length_b 38.574 _cell.length_b_esd ? _cell.length_c 34.925 _cell.length_c_esd ? _cell.volume 51966.534 _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Cyclic peptide ORD-TYR-LEU-LEU-PHI-TYR-THR-GLU-GMO-LYS-VAL-THR-MVA-THR-VAL-LYS' 2088.272 1 ? ? ? ? 2 water nat water 18.015 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ORN)YLL(PHI)YTE(Y1V)KVT(MVA)TVK' _entity_poly.pdbx_seq_one_letter_code_can AYLLFYTELKVTVTVK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ORN n 1 2 TYR n 1 3 LEU n 1 4 LEU n 1 5 PHI n 1 6 TYR n 1 7 THR n 1 8 GLU n 1 9 Y1V n 1 10 LYS n 1 11 VAL n 1 12 THR n 1 13 MVA n 1 14 THR n 1 15 VAL n 1 16 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7LIB _struct_ref.pdbx_db_accession 7LIB _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7LIB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7LIB _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 PHI 'L-peptide linking' n IODO-PHENYLALANINE ? 'C9 H10 I N O2' 291.086 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 Y1V 'L-peptide linking' n '(4R)-5-amino-L-leucine' ? 'C6 H14 N2 O2' 146.188 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7LIB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.42 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 20.92 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M SPG buffer, pH 10.5, 31% PEG1500' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-03-01 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate 9.56 _reflns.entry_id 7LIB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.03 _reflns.d_resolution_low 27.28 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5812 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 85.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20.7 _reflns.pdbx_Rmerge_I_obs 0.108 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.03 _reflns_shell.d_res_low 1.05 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 40 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.737 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 12.40 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7LIB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.10 _refine.ls_d_res_low 27.28 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5413 _refine.ls_number_reflns_R_free 271 _refine.ls_number_reflns_R_work 5142 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.27 _refine.ls_percent_reflns_R_free 5.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1790 _refine.ls_R_factor_R_free 0.2083 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1775 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 17.9122 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0750 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.10 _refine_hist.d_res_low 27.28 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 151 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 139 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0152 ? 165 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.1146 ? 227 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0996 ? 30 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0092 ? 24 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 29.6936 ? 37 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.10 1.39 . . 118 2424 92.64 . . . 0.2259 . 0.2031 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.39 27.28 . . 153 2718 99.72 . . . 0.2036 . 0.1713 . . . . . . . . . . . # _struct.entry_id 7LIB _struct.title 'X-ray crystal structure of a cyclic peptide containing beta-2-microglobulin (63-69) and a gamma-methylornithine turn unit' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7LIB _struct_keywords.text 'turn unit, beta-2-microglobulin, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ORN 1 C ? ? ? 1_555 A TYR 2 N ? ? A ORN 1 A TYR 2 1_555 ? ? ? ? ? ? ? 1.370 ? ? covale2 covale both ? A ORN 1 NE ? ? ? 1_555 A LYS 16 C ? ? A ORN 1 A LYS 16 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale3 covale both ? A LEU 4 C ? ? ? 1_555 A PHI 5 N ? ? A LEU 4 A PHI 5 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale4 covale both ? A PHI 5 C ? ? ? 1_555 A TYR 6 N ? ? A PHI 5 A TYR 6 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A GLU 8 C ? ? ? 1_555 A Y1V 9 N ? ? A GLU 8 A Y1V 9 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale6 covale both ? A Y1V 9 C ? ? ? 1_555 A LYS 10 N ? ? A Y1V 9 A LYS 10 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale7 covale both ? A THR 12 C ? ? ? 1_555 A MVA 13 N ? ? A THR 12 A MVA 13 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? A MVA 13 C ? ? ? 1_555 A THR 14 N ? ? A MVA 13 A THR 14 1_555 ? ? ? ? ? ? ? 1.311 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 2 ? THR A 7 ? TYR A 2 THR A 7 AA1 2 VAL A 11 ? LYS A 16 ? VAL A 11 LYS A 16 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id TYR _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 2 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id TYR _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 2 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LYS _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 16 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 16 # _atom_sites.entry_id 7LIB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.025924 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025924 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028633 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.53795 0.34799 0.11320 ? 10.08003 29.74760 2.57510 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? I ? ? 40.26819 12.56501 ? ? 1.42647 27.02115 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ORN 1 1 1 ORN ORD A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 PHI 5 5 5 PHI PHI A . n A 1 6 TYR 6 6 6 TYR TYR A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 Y1V 9 9 9 Y1V GMO A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 MVA 13 13 13 MVA MVA A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LYS 16 16 16 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 5 HOH HOH A . B 2 HOH 2 102 3 HOH HOH A . B 2 HOH 3 103 2 HOH HOH A . B 2 HOH 4 104 8 HOH HOH A . B 2 HOH 5 105 9 HOH HOH A . B 2 HOH 6 106 7 HOH HOH A . B 2 HOH 7 107 4 HOH HOH A . B 2 HOH 8 108 1 HOH HOH A . B 2 HOH 9 109 6 HOH HOH A . B 2 HOH 10 110 11 HOH HOH A . B 2 HOH 11 111 12 HOH HOH A . B 2 HOH 12 112 10 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7760 ? 1 MORE -51 ? 1 'SSA (A^2)' 7410 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 38.5740000000 0.0000000000 -1.0000000000 0.0000000000 38.5740000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 38.5740000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 38.5740000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 5_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 38.5740000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 6 'crystal symmetry operation' 6_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 38.5740000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 7 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 8 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0.0000000000 -1.0000000000 0.0000000000 38.5740000000 -1.0000000000 0.0000000000 0.0000000000 38.5740000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 106 ? B HOH . 2 1 A HOH 111 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-08-11 2 'Structure model' 1 1 2021-10-20 3 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' atom_site 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' pdbx_validate_peptide_omega 7 3 'Structure model' pdbx_validate_rmsd_angle 8 3 'Structure model' pdbx_validate_torsion 9 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.name' 5 3 'Structure model' '_atom_site.auth_atom_id' 6 3 'Structure model' '_atom_site.label_atom_id' 7 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x,z 3 y,-x,z 4 x,-y,-z 5 -x,y,-z 6 -x,-y,z 7 y,x,-z 8 -y,-x,-z 9 x+1/2,y+1/2,z+1/2 10 -y+1/2,x+1/2,z+1/2 11 y+1/2,-x+1/2,z+1/2 12 x+1/2,-y+1/2,-z+1/2 13 -x+1/2,y+1/2,-z+1/2 14 -x+1/2,-y+1/2,z+1/2 15 y+1/2,x+1/2,-z+1/2 16 -y+1/2,-x+1/2,-z+1/2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19_4092 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 # _pdbx_entry_details.entry_id 7LIB _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLU _pdbx_validate_rmsd_angle.auth_seq_id_1 8 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 Y1V _pdbx_validate_rmsd_angle.auth_seq_id_2 9 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 Y1V _pdbx_validate_rmsd_angle.auth_seq_id_3 9 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 86.11 _pdbx_validate_rmsd_angle.angle_target_value 121.70 _pdbx_validate_rmsd_angle.angle_deviation -35.59 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id Y1V _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 9 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 26.50 _pdbx_validate_torsion.psi -28.06 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLU _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 8 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 Y1V _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 9 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -146.80 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLU N N N N 1 GLU CA C N S 2 GLU C C N N 3 GLU O O N N 4 GLU CB C N N 5 GLU CG C N N 6 GLU CD C N N 7 GLU OE1 O N N 8 GLU OE2 O N N 9 GLU OXT O N N 10 GLU H H N N 11 GLU H2 H N N 12 GLU HA H N N 13 GLU HB2 H N N 14 GLU HB3 H N N 15 GLU HG2 H N N 16 GLU HG3 H N N 17 GLU HE2 H N N 18 GLU HXT H N N 19 HOH O O N N 20 HOH H1 H N N 21 HOH H2 H N N 22 LEU N N N N 23 LEU CA C N S 24 LEU C C N N 25 LEU O O N N 26 LEU CB C N N 27 LEU CG C N N 28 LEU CD1 C N N 29 LEU CD2 C N N 30 LEU OXT O N N 31 LEU H H N N 32 LEU H2 H N N 33 LEU HA H N N 34 LEU HB2 H N N 35 LEU HB3 H N N 36 LEU HG H N N 37 LEU HD11 H N N 38 LEU HD12 H N N 39 LEU HD13 H N N 40 LEU HD21 H N N 41 LEU HD22 H N N 42 LEU HD23 H N N 43 LEU HXT H N N 44 LYS N N N N 45 LYS CA C N S 46 LYS C C N N 47 LYS O O N N 48 LYS CB C N N 49 LYS CG C N N 50 LYS CD C N N 51 LYS CE C N N 52 LYS NZ N N N 53 LYS OXT O N N 54 LYS H H N N 55 LYS H2 H N N 56 LYS HA H N N 57 LYS HB2 H N N 58 LYS HB3 H N N 59 LYS HG2 H N N 60 LYS HG3 H N N 61 LYS HD2 H N N 62 LYS HD3 H N N 63 LYS HE2 H N N 64 LYS HE3 H N N 65 LYS HZ1 H N N 66 LYS HZ2 H N N 67 LYS HZ3 H N N 68 LYS HXT H N N 69 MVA N N N N 70 MVA CN C N N 71 MVA CA C N S 72 MVA CB C N N 73 MVA CG1 C N N 74 MVA CG2 C N N 75 MVA C C N N 76 MVA O O N N 77 MVA OXT O N N 78 MVA H H N N 79 MVA HN1 H N N 80 MVA HN2 H N N 81 MVA HN3 H N N 82 MVA HA H N N 83 MVA HB H N N 84 MVA HG11 H N N 85 MVA HG12 H N N 86 MVA HG13 H N N 87 MVA HG21 H N N 88 MVA HG22 H N N 89 MVA HG23 H N N 90 MVA HXT H N N 91 ORN N N N N 92 ORN CA C N S 93 ORN CB C N N 94 ORN CG C N N 95 ORN CD C N N 96 ORN NE N N N 97 ORN C C N N 98 ORN O O N N 99 ORN OXT O N N 100 ORN H H N N 101 ORN H2 H N N 102 ORN HA H N N 103 ORN HB2 H N N 104 ORN HB3 H N N 105 ORN HG2 H N N 106 ORN HG3 H N N 107 ORN HD2 H N N 108 ORN HD3 H N N 109 ORN HE1 H N N 110 ORN HE2 H N N 111 ORN HXT H N N 112 PHI N N N N 113 PHI CA C N S 114 PHI CB C N N 115 PHI CG C Y N 116 PHI CD1 C Y N 117 PHI CD2 C Y N 118 PHI CE1 C Y N 119 PHI CE2 C Y N 120 PHI CZ C Y N 121 PHI I I N N 122 PHI C C N N 123 PHI O O N N 124 PHI OXT O N N 125 PHI H H N N 126 PHI H2 H N N 127 PHI HA H N N 128 PHI HB2 H N N 129 PHI HB3 H N N 130 PHI HD1 H N N 131 PHI HD2 H N N 132 PHI HE1 H N N 133 PHI HE2 H N N 134 PHI HXT H N N 135 THR N N N N 136 THR CA C N S 137 THR C C N N 138 THR O O N N 139 THR CB C N R 140 THR OG1 O N N 141 THR CG2 C N N 142 THR OXT O N N 143 THR H H N N 144 THR H2 H N N 145 THR HA H N N 146 THR HB H N N 147 THR HG1 H N N 148 THR HG21 H N N 149 THR HG22 H N N 150 THR HG23 H N N 151 THR HXT H N N 152 TYR N N N N 153 TYR CA C N S 154 TYR C C N N 155 TYR O O N N 156 TYR CB C N N 157 TYR CG C Y N 158 TYR CD1 C Y N 159 TYR CD2 C Y N 160 TYR CE1 C Y N 161 TYR CE2 C Y N 162 TYR CZ C Y N 163 TYR OH O N N 164 TYR OXT O N N 165 TYR H H N N 166 TYR H2 H N N 167 TYR HA H N N 168 TYR HB2 H N N 169 TYR HB3 H N N 170 TYR HD1 H N N 171 TYR HD2 H N N 172 TYR HE1 H N N 173 TYR HE2 H N N 174 TYR HH H N N 175 TYR HXT H N N 176 VAL N N N N 177 VAL CA C N S 178 VAL C C N N 179 VAL O O N N 180 VAL CB C N N 181 VAL CG1 C N N 182 VAL CG2 C N N 183 VAL OXT O N N 184 VAL H H N N 185 VAL H2 H N N 186 VAL HA H N N 187 VAL HB H N N 188 VAL HG11 H N N 189 VAL HG12 H N N 190 VAL HG13 H N N 191 VAL HG21 H N N 192 VAL HG22 H N N 193 VAL HG23 H N N 194 VAL HXT H N N 195 Y1V C C N N 196 Y1V O O N N 197 Y1V CB C N N 198 Y1V CG C N R 199 Y1V CD C N N 200 Y1V N N N N 201 Y1V CM C N N 202 Y1V CA C N S 203 Y1V NA N N N 204 Y1V OXT O N N 205 Y1V HB3 H N N 206 Y1V HB2 H N N 207 Y1V HG2 H N N 208 Y1V HD2 H N N 209 Y1V HD3 H N N 210 Y1V H H N N 211 Y1V H2 H N N 212 Y1V HM11 H N N 213 Y1V HM1 H N N 214 Y1V HM2 H N N 215 Y1V HA H N N 216 Y1V HN1 H N N 217 Y1V HN3 H N N 218 Y1V HXT H N N 219 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU N CA sing N N 1 GLU N H sing N N 2 GLU N H2 sing N N 3 GLU CA C sing N N 4 GLU CA CB sing N N 5 GLU CA HA sing N N 6 GLU C O doub N N 7 GLU C OXT sing N N 8 GLU CB CG sing N N 9 GLU CB HB2 sing N N 10 GLU CB HB3 sing N N 11 GLU CG CD sing N N 12 GLU CG HG2 sing N N 13 GLU CG HG3 sing N N 14 GLU CD OE1 doub N N 15 GLU CD OE2 sing N N 16 GLU OE2 HE2 sing N N 17 GLU OXT HXT sing N N 18 HOH O H1 sing N N 19 HOH O H2 sing N N 20 LEU N CA sing N N 21 LEU N H sing N N 22 LEU N H2 sing N N 23 LEU CA C sing N N 24 LEU CA CB sing N N 25 LEU CA HA sing N N 26 LEU C O doub N N 27 LEU C OXT sing N N 28 LEU CB CG sing N N 29 LEU CB HB2 sing N N 30 LEU CB HB3 sing N N 31 LEU CG CD1 sing N N 32 LEU CG CD2 sing N N 33 LEU CG HG sing N N 34 LEU CD1 HD11 sing N N 35 LEU CD1 HD12 sing N N 36 LEU CD1 HD13 sing N N 37 LEU CD2 HD21 sing N N 38 LEU CD2 HD22 sing N N 39 LEU CD2 HD23 sing N N 40 LEU OXT HXT sing N N 41 LYS N CA sing N N 42 LYS N H sing N N 43 LYS N H2 sing N N 44 LYS CA C sing N N 45 LYS CA CB sing N N 46 LYS CA HA sing N N 47 LYS C O doub N N 48 LYS C OXT sing N N 49 LYS CB CG sing N N 50 LYS CB HB2 sing N N 51 LYS CB HB3 sing N N 52 LYS CG CD sing N N 53 LYS CG HG2 sing N N 54 LYS CG HG3 sing N N 55 LYS CD CE sing N N 56 LYS CD HD2 sing N N 57 LYS CD HD3 sing N N 58 LYS CE NZ sing N N 59 LYS CE HE2 sing N N 60 LYS CE HE3 sing N N 61 LYS NZ HZ1 sing N N 62 LYS NZ HZ2 sing N N 63 LYS NZ HZ3 sing N N 64 LYS OXT HXT sing N N 65 MVA N CN sing N N 66 MVA N CA sing N N 67 MVA N H sing N N 68 MVA CN HN1 sing N N 69 MVA CN HN2 sing N N 70 MVA CN HN3 sing N N 71 MVA CA CB sing N N 72 MVA CA C sing N N 73 MVA CA HA sing N N 74 MVA CB CG1 sing N N 75 MVA CB CG2 sing N N 76 MVA CB HB sing N N 77 MVA CG1 HG11 sing N N 78 MVA CG1 HG12 sing N N 79 MVA CG1 HG13 sing N N 80 MVA CG2 HG21 sing N N 81 MVA CG2 HG22 sing N N 82 MVA CG2 HG23 sing N N 83 MVA C O doub N N 84 MVA C OXT sing N N 85 MVA OXT HXT sing N N 86 ORN N CA sing N N 87 ORN N H sing N N 88 ORN N H2 sing N N 89 ORN CA CB sing N N 90 ORN CA C sing N N 91 ORN CA HA sing N N 92 ORN CB CG sing N N 93 ORN CB HB2 sing N N 94 ORN CB HB3 sing N N 95 ORN CG CD sing N N 96 ORN CG HG2 sing N N 97 ORN CG HG3 sing N N 98 ORN CD NE sing N N 99 ORN CD HD2 sing N N 100 ORN CD HD3 sing N N 101 ORN NE HE1 sing N N 102 ORN NE HE2 sing N N 103 ORN C O doub N N 104 ORN C OXT sing N N 105 ORN OXT HXT sing N N 106 PHI N CA sing N N 107 PHI N H sing N N 108 PHI N H2 sing N N 109 PHI CA CB sing N N 110 PHI CA C sing N N 111 PHI CA HA sing N N 112 PHI CB CG sing N N 113 PHI CB HB2 sing N N 114 PHI CB HB3 sing N N 115 PHI CG CD1 doub Y N 116 PHI CG CD2 sing Y N 117 PHI CD1 CE1 sing Y N 118 PHI CD1 HD1 sing N N 119 PHI CD2 CE2 doub Y N 120 PHI CD2 HD2 sing N N 121 PHI CE1 CZ doub Y N 122 PHI CE1 HE1 sing N N 123 PHI CE2 CZ sing Y N 124 PHI CE2 HE2 sing N N 125 PHI CZ I sing N N 126 PHI C O doub N N 127 PHI C OXT sing N N 128 PHI OXT HXT sing N N 129 THR N CA sing N N 130 THR N H sing N N 131 THR N H2 sing N N 132 THR CA C sing N N 133 THR CA CB sing N N 134 THR CA HA sing N N 135 THR C O doub N N 136 THR C OXT sing N N 137 THR CB OG1 sing N N 138 THR CB CG2 sing N N 139 THR CB HB sing N N 140 THR OG1 HG1 sing N N 141 THR CG2 HG21 sing N N 142 THR CG2 HG22 sing N N 143 THR CG2 HG23 sing N N 144 THR OXT HXT sing N N 145 TYR N CA sing N N 146 TYR N H sing N N 147 TYR N H2 sing N N 148 TYR CA C sing N N 149 TYR CA CB sing N N 150 TYR CA HA sing N N 151 TYR C O doub N N 152 TYR C OXT sing N N 153 TYR CB CG sing N N 154 TYR CB HB2 sing N N 155 TYR CB HB3 sing N N 156 TYR CG CD1 doub Y N 157 TYR CG CD2 sing Y N 158 TYR CD1 CE1 sing Y N 159 TYR CD1 HD1 sing N N 160 TYR CD2 CE2 doub Y N 161 TYR CD2 HD2 sing N N 162 TYR CE1 CZ doub Y N 163 TYR CE1 HE1 sing N N 164 TYR CE2 CZ sing Y N 165 TYR CE2 HE2 sing N N 166 TYR CZ OH sing N N 167 TYR OH HH sing N N 168 TYR OXT HXT sing N N 169 VAL N CA sing N N 170 VAL N H sing N N 171 VAL N H2 sing N N 172 VAL CA C sing N N 173 VAL CA CB sing N N 174 VAL CA HA sing N N 175 VAL C O doub N N 176 VAL C OXT sing N N 177 VAL CB CG1 sing N N 178 VAL CB CG2 sing N N 179 VAL CB HB sing N N 180 VAL CG1 HG11 sing N N 181 VAL CG1 HG12 sing N N 182 VAL CG1 HG13 sing N N 183 VAL CG2 HG21 sing N N 184 VAL CG2 HG22 sing N N 185 VAL CG2 HG23 sing N N 186 VAL OXT HXT sing N N 187 Y1V NA CA sing N N 188 Y1V CM CG sing N N 189 Y1V CG CB sing N N 190 Y1V CG CD sing N N 191 Y1V CA CB sing N N 192 Y1V CA C sing N N 193 Y1V CD N sing N N 194 Y1V O C doub N N 195 Y1V C OXT sing N N 196 Y1V CB HB3 sing N N 197 Y1V CB HB2 sing N N 198 Y1V CG HG2 sing N N 199 Y1V CD HD2 sing N N 200 Y1V CD HD3 sing N N 201 Y1V N H sing N N 202 Y1V N H2 sing N N 203 Y1V CM HM11 sing N N 204 Y1V CM HM1 sing N N 205 Y1V CM HM2 sing N N 206 Y1V CA HA sing N N 207 Y1V NA HN1 sing N N 208 Y1V NA HN3 sing N N 209 Y1V OXT HXT sing N N 210 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM097562 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id Y1V _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id Y1V _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'I 4 2 2' _space_group.name_Hall 'I 4 2' _space_group.IT_number 97 _space_group.crystal_system tetragonal _space_group.id 1 #