HEADER VIRAL PROTEIN 12-MAR-21 7M12 TITLE TVV2 CAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: B, A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS VIRUS 2; SOURCE 3 ORGANISM_TAXID: 674954 KEYWDS CAPSID, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR H.Z.ZHOU,A.W.STEVENS,Y.X.CUI,K.A.MURATORE,P.J.JOHNSON REVDAT 3 06-MAR-24 7M12 1 REMARK REVDAT 2 14-APR-21 7M12 1 JRNL REVDAT 1 07-APR-21 7M12 0 JRNL AUTH A.STEVENS,K.MURATORE,Y.CUI,P.J.JOHNSON,Z.H.ZHOU JRNL TITL ATOMIC STRUCTURE OF THE TRICHOMONAS VAGINALIS JRNL TITL 2 DOUBLE-STRANDED RNA VIRUS 2. JRNL REF MBIO V. 12 2021 JRNL REFN ESSN 2150-7511 JRNL PMID 33785622 JRNL DOI 10.1128/MBIO.02924-20 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, SERIALEM, CTFFIND, RELION, REMARK 3 RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.000 REMARK 3 NUMBER OF PARTICLES : 29916 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7M12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255240. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TRICHOMONAS VAGINALIS VIRUS 2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : THE GRIDS WERE MANUALLY PLUNGED REMARK 245 INTO LIQUID ETHANE. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2177 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1700.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309018 -0.951056 0.000458 535.70868 REMARK 350 BIOMT2 2 0.951055 0.309017 -0.001471 -84.10396 REMARK 350 BIOMT3 2 0.001257 0.000890 0.999999 -0.70009 REMARK 350 BIOMT1 3 -0.809014 -0.587786 0.001998 781.23960 REMARK 350 BIOMT2 3 0.587784 -0.809017 -0.001490 399.39611 REMARK 350 BIOMT3 3 0.002492 -0.000031 0.999997 -0.80151 REMARK 350 BIOMT1 4 -0.809014 0.587784 0.002492 397.27737 REMARK 350 BIOMT2 4 -0.587786 -0.809017 -0.000031 782.31954 REMARK 350 BIOMT3 4 0.001998 -0.001490 0.999997 -0.16411 REMARK 350 BIOMT1 5 0.309018 0.951055 0.001257 -85.55525 REMARK 350 BIOMT2 5 -0.951056 0.309017 0.000890 535.47917 REMARK 350 BIOMT3 5 0.000458 -0.001471 0.999999 0.33125 REMARK 350 BIOMT1 6 -0.948126 -0.160971 -0.274126 777.37857 REMARK 350 BIOMT2 6 -0.160971 -0.500485 0.850649 264.76048 REMARK 350 BIOMT3 6 -0.274126 0.850649 0.448611 -8.36567 REMARK 350 BIOMT1 7 -0.446425 0.851734 -0.274323 283.18935 REMARK 350 BIOMT2 7 -0.524663 -0.000809 0.851310 220.02403 REMARK 350 BIOMT3 7 0.724868 0.523973 0.447234 -227.07423 REMARK 350 BIOMT1 8 0.671748 0.687532 -0.275779 -27.40674 REMARK 350 BIOMT2 8 -0.161829 0.499491 0.851070 -61.57018 REMARK 350 BIOMT3 8 0.722887 -0.527076 0.446795 116.86257 REMARK 350 BIOMT1 9 0.861117 -0.426656 -0.276482 274.82353 REMARK 350 BIOMT2 9 0.426105 0.309017 0.850260 -190.86853 REMARK 350 BIOMT3 9 -0.277331 -0.849984 0.447900 548.13576 REMARK 350 BIOMT1 10 -0.140021 -0.951060 -0.275461 772.20820 REMARK 350 BIOMT2 10 0.426636 -0.309002 0.850000 10.81491 REMARK 350 BIOMT3 10 -0.893519 0.001496 0.449023 470.74045 REMARK 350 BIOMT1 11 -0.861721 -0.425666 0.276125 656.03605 REMARK 350 BIOMT2 11 -0.425666 0.310335 -0.850001 641.39561 REMARK 350 BIOMT3 11 0.276125 -0.850001 -0.448613 660.22414 REMARK 350 BIOMT1 12 -0.670772 0.688253 0.276356 230.01129 REMARK 350 BIOMT2 12 0.162539 0.499975 -0.850651 387.85748 REMARK 350 BIOMT3 12 -0.723634 -0.525674 -0.447237 879.94915 REMARK 350 BIOMT1 13 0.447633 0.850870 0.275037 -187.40536 REMARK 350 BIOMT2 13 0.524661 -0.000839 -0.851311 433.47647 REMARK 350 BIOMT3 13 -0.724123 0.525376 -0.446794 536.81652 REMARK 350 BIOMT1 14 0.947897 -0.162547 0.273990 -19.35828 REMARK 350 BIOMT2 14 0.160261 -0.499999 -0.851068 715.20869 REMARK 350 BIOMT3 14 0.275333 0.850635 -0.447898 105.02386 REMARK 350 BIOMT1 15 0.138671 -0.951489 0.274663 501.91717 REMARK 350 BIOMT2 15 -0.427073 -0.307683 -0.850259 843.70979 REMARK 350 BIOMT3 15 0.893521 0.000605 -0.449022 181.29397 REMARK 350 BIOMT1 16 0.809848 0.586637 -0.001999 -128.85710 REMARK 350 BIOMT2 16 0.586637 -0.809850 -0.000648 399.76741 REMARK 350 BIOMT3 16 -0.001999 -0.000648 -0.999998 653.58414 REMARK 350 BIOMT1 17 0.808179 -0.588931 -0.002491 255.64818 REMARK 350 BIOMT2 17 -0.588931 -0.808183 0.000811 782.14594 REMARK 350 BIOMT3 17 -0.002491 0.000811 -0.999997 653.26776 REMARK 350 BIOMT1 18 -0.310367 -0.950616 -0.001255 738.13001 REMARK 350 BIOMT2 18 -0.950616 0.310365 0.001730 534.62110 REMARK 350 BIOMT3 18 -0.001255 0.001730 -0.999998 652.56503 REMARK 350 BIOMT1 19 -0.999999 0.001419 0.000001 651.81489 REMARK 350 BIOMT2 19 0.001419 0.999999 0.000839 -0.73621 REMARK 350 BIOMT3 19 0.000001 0.000839 -1.000000 652.44709 REMARK 350 BIOMT1 20 -0.307668 0.951494 -0.000459 115.98739 REMARK 350 BIOMT2 20 0.951494 0.307668 -0.000631 -84.08037 REMARK 350 BIOMT3 20 -0.000459 -0.000631 -1.000000 653.07694 REMARK 350 BIOMT1 21 -0.139276 -0.426126 -0.893878 802.41163 REMARK 350 BIOMT2 21 0.951051 -0.309032 -0.000864 117.48070 REMARK 350 BIOMT3 21 -0.275869 -0.850244 0.448309 547.61072 REMARK 350 BIOMT1 22 -0.449432 -0.000016 -0.893314 764.26481 REMARK 350 BIOMT2 22 -0.000016 -1.000000 0.000026 652.95850 REMARK 350 BIOMT3 22 -0.893314 0.000026 0.449432 471.02024 REMARK 350 BIOMT1 23 -0.140021 0.426636 -0.893519 524.12682 REMARK 350 BIOMT2 23 -0.951060 -0.309002 0.001496 737.05390 REMARK 350 BIOMT3 23 -0.275461 0.850000 0.449023 -7.85289 REMARK 350 BIOMT1 24 0.361362 0.264210 -0.894209 413.86021 REMARK 350 BIOMT2 24 -0.587771 0.809026 0.001516 253.54991 REMARK 350 BIOMT3 24 0.723839 0.525043 0.447646 -227.22228 REMARK 350 BIOMT1 25 0.361822 -0.262825 -0.894432 585.84968 REMARK 350 BIOMT2 25 0.587799 0.809007 0.000057 -129.36738 REMARK 350 BIOMT3 25 0.723587 -0.525766 0.447205 116.07311 REMARK 350 BIOMT1 26 0.445681 -0.524687 -0.725308 588.79777 REMARK 350 BIOMT2 26 -0.851734 0.000839 -0.523973 774.99515 REMARK 350 BIOMT3 26 0.275531 0.851295 -0.446520 104.29436 REMARK 350 BIOMT1 27 -0.362195 -0.586650 -0.724332 872.18883 REMARK 350 BIOMT2 27 -0.263062 0.809840 -0.524363 319.00987 REMARK 350 BIOMT3 27 0.894211 0.000622 -0.447645 180.61395 REMARK 350 BIOMT1 28 -0.670772 0.162539 -0.723634 728.00448 REMARK 350 BIOMT2 28 0.688253 0.499975 -0.525674 110.34172 REMARK 350 BIOMT3 28 0.276356 -0.850651 -0.447237 659.91160 REMARK 350 BIOMT1 29 -0.053607 0.687525 -0.724179 355.50258 REMARK 350 BIOMT2 29 0.687525 -0.500534 -0.526094 437.36300 REMARK 350 BIOMT3 29 -0.724179 -0.526094 -0.445859 879.81425 REMARK 350 BIOMT1 30 0.636398 0.262796 -0.725214 269.46810 REMARK 350 BIOMT2 30 -0.264239 -0.809017 -0.525042 848.14141 REMARK 350 BIOMT3 30 -0.724689 0.525766 -0.445416 536.42391 REMARK 350 BIOMT1 31 0.054582 0.686841 0.724756 -152.43417 REMARK 350 BIOMT2 31 -0.688235 -0.499999 0.525674 542.62225 REMARK 350 BIOMT3 31 0.723432 -0.527495 0.445417 117.27169 REMARK 350 BIOMT1 32 0.671002 0.160979 0.723770 -181.46725 REMARK 350 BIOMT2 32 -0.687543 0.500510 0.526094 215.61260 REMARK 350 BIOMT3 32 -0.277563 -0.850633 0.446523 548.87281 REMARK 350 BIOMT1 33 0.361362 -0.587771 0.723839 163.94841 REMARK 350 BIOMT2 33 0.264210 0.809026 0.525043 -195.17332 REMARK 350 BIOMT3 33 -0.894209 0.001516 0.447646 471.40862 REMARK 350 BIOMT1 34 -0.446425 -0.524663 0.724868 406.46011 REMARK 350 BIOMT2 34 0.851734 -0.000809 0.523973 -122.04334 REMARK 350 BIOMT3 34 -0.274323 0.851310 0.447234 -8.06801 REMARK 350 BIOMT1 35 -0.636025 0.263091 0.725434 210.92492 REMARK 350 BIOMT2 35 0.263091 -0.809831 0.524363 333.93940 REMARK 350 BIOMT3 35 0.725434 0.524363 0.445856 -226.93667 REMARK 350 BIOMT1 36 -0.360987 0.263973 0.894431 65.78228 REMARK 350 BIOMT2 36 0.588918 0.808192 -0.000837 -129.17461 REMARK 350 BIOMT3 36 -0.723093 0.526445 -0.447205 536.26583 REMARK 350 BIOMT1 37 0.140626 0.425687 0.893877 -150.42888 REMARK 350 BIOMT2 37 0.950621 -0.310350 -0.001756 118.34252 REMARK 350 BIOMT3 37 0.276667 0.849985 -0.448310 104.93560 REMARK 350 BIOMT1 38 0.449431 -0.001403 0.893314 -111.52219 REMARK 350 BIOMT2 38 -0.001403 -0.999999 -0.000865 653.70120 REMARK 350 BIOMT3 38 0.893314 -0.000865 -0.449433 181.97528 REMARK 350 BIOMT1 39 0.138671 -0.427073 0.893521 128.73462 REMARK 350 BIOMT2 39 -0.951489 -0.307683 0.000605 737.05393 REMARK 350 BIOMT3 39 0.274663 -0.850259 -0.449022 660.91865 REMARK 350 BIOMT1 40 -0.362195 -0.263062 0.894211 238.31481 REMARK 350 BIOMT2 40 -0.586650 0.809840 0.000622 253.21007 REMARK 350 BIOMT3 40 -0.724332 -0.524363 -0.447645 879.88225 REMARK 350 BIOMT1 41 -0.139276 0.951051 -0.275869 151.09572 REMARK 350 BIOMT2 41 -0.426126 -0.309032 -0.850244 843.83684 REMARK 350 BIOMT3 41 -0.893878 -0.000864 0.448309 471.86132 REMARK 350 BIOMT1 42 0.861117 0.426105 -0.277331 -3.30983 REMARK 350 BIOMT2 42 -0.426656 0.309017 -0.849984 642.14346 REMARK 350 BIOMT3 42 -0.276482 0.850260 0.447900 -7.23832 REMARK 350 BIOMT1 43 0.671002 -0.687543 -0.277563 422.35480 REMARK 350 BIOMT2 43 0.160979 0.500510 -0.850633 388.18541 REMARK 350 BIOMT3 43 0.723770 0.526094 0.446523 -227.17622 REMARK 350 BIOMT1 44 -0.446889 -0.850870 -0.276245 839.83557 REMARK 350 BIOMT2 44 0.524688 0.000809 -0.851294 432.92408 REMARK 350 BIOMT3 44 0.724564 -0.525376 0.446080 115.99432 REMARK 350 BIOMT1 45 -0.947668 0.161837 -0.275198 672.18824 REMARK 350 BIOMT2 45 0.161837 -0.499515 -0.851054 714.53215 REMARK 350 BIOMT3 45 -0.275198 -0.851054 0.447184 548.02328 REMARK 350 BIOMT1 46 0.054583 -0.688235 0.723432 296.93390 REMARK 350 BIOMT2 46 0.686841 -0.499999 -0.527495 437.86884 REMARK 350 BIOMT3 46 0.724756 0.525674 0.445417 -226.99971 REMARK 350 BIOMT1 47 -0.636773 -0.263944 0.724468 383.55106 REMARK 350 BIOMT2 47 -0.263944 -0.808201 -0.526445 848.23651 REMARK 350 BIOMT3 47 0.724468 -0.526445 0.444975 116.73508 REMARK 350 BIOMT1 48 -0.446889 0.524688 0.724564 64.11765 REMARK 350 BIOMT2 48 -0.850870 0.000809 -0.525376 775.18100 REMARK 350 BIOMT3 48 -0.276245 -0.851294 0.446080 548.80330 REMARK 350 BIOMT1 49 0.361822 0.587799 0.723587 -219.92022 REMARK 350 BIOMT2 49 -0.262825 0.809007 -0.525766 319.66254 REMARK 350 BIOMT3 49 -0.894432 0.000057 0.447205 472.10136 REMARK 350 BIOMT1 50 0.671748 -0.161829 0.722887 -76.03186 REMARK 350 BIOMT2 50 0.687532 0.499491 -0.527076 111.19217 REMARK 350 BIOMT3 50 -0.275779 0.851070 0.446795 -7.37127 REMARK 350 BIOMT1 51 -0.360987 0.588918 -0.723093 487.58995 REMARK 350 BIOMT2 51 0.263973 0.808192 0.526445 -195.28110 REMARK 350 BIOMT3 51 0.894431 -0.000837 -0.447205 180.87499 REMARK 350 BIOMT1 52 0.447633 0.524661 -0.724123 245.18199 REMARK 350 BIOMT2 52 0.850870 -0.000839 0.525376 -122.20931 REMARK 350 BIOMT3 52 0.275037 -0.851311 -0.446794 660.41295 REMARK 350 BIOMT1 53 0.636398 -0.264239 -0.724689 441.36397 REMARK 350 BIOMT2 53 0.262796 -0.809017 0.525766 333.31169 REMARK 350 BIOMT3 53 -0.725214 -0.525042 -0.445416 879.66397 REMARK 350 BIOMT1 54 -0.055559 -0.687550 -0.724009 805.01906 REMARK 350 BIOMT2 54 -0.687550 -0.499466 0.527076 541.76736 REMARK 350 BIOMT3 54 -0.724009 0.527076 -0.444975 535.63059 REMARK 350 BIOMT1 55 -0.671977 -0.160269 -0.723022 833.58828 REMARK 350 BIOMT2 55 -0.686823 0.500024 0.527495 215.07905 REMARK 350 BIOMT3 55 0.276987 0.851052 -0.446081 103.75525 REMARK 350 BIOMT1 56 0.445681 -0.851734 0.275531 368.93795 REMARK 350 BIOMT2 56 -0.524687 0.000839 0.851295 219.49892 REMARK 350 BIOMT3 56 -0.725308 -0.523973 -0.446520 879.70600 REMARK 350 BIOMT1 57 -0.671977 -0.686823 0.276987 679.13430 REMARK 350 BIOMT2 57 -0.160269 0.500024 0.851052 -62.24716 REMARK 350 BIOMT3 57 -0.723022 0.527495 -0.446081 535.53289 REMARK 350 BIOMT1 58 -0.860511 0.427094 0.277689 376.72109 REMARK 350 BIOMT2 58 0.427094 0.307698 0.850243 -190.75460 REMARK 350 BIOMT3 58 0.277689 0.850243 -0.447187 104.15156 REMARK 350 BIOMT1 59 0.140626 0.950621 0.276667 -120.37690 REMARK 350 BIOMT2 59 0.425687 -0.310350 0.849985 11.56952 REMARK 350 BIOMT3 59 0.893877 -0.001756 -0.448310 181.71634 REMARK 350 BIOMT1 60 0.947897 0.160261 0.275333 -125.18715 REMARK 350 BIOMT2 60 -0.162547 -0.499999 0.850635 265.12013 REMARK 350 BIOMT3 60 0.273990 -0.851068 -0.447898 661.03534 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 701 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 83 -176.99 -69.58 REMARK 500 PHE B 89 54.32 -91.05 REMARK 500 PHE B 121 -10.47 71.26 REMARK 500 TYR B 160 4.07 -150.22 REMARK 500 GLN B 165 33.80 39.28 REMARK 500 THR B 167 28.11 43.92 REMARK 500 PRO B 176 47.91 -84.20 REMARK 500 ARG B 197 105.93 -56.84 REMARK 500 ALA B 239 73.00 -116.68 REMARK 500 CYS B 244 53.01 -149.73 REMARK 500 ALA B 320 -70.92 63.89 REMARK 500 GLU B 347 -5.59 70.22 REMARK 500 ARG B 363 148.74 -172.13 REMARK 500 THR B 396 -4.26 74.11 REMARK 500 ASP B 406 35.28 -148.39 REMARK 500 ALA B 407 75.55 62.65 REMARK 500 HIS B 408 73.34 72.41 REMARK 500 LYS B 434 60.96 62.51 REMARK 500 ILE B 445 -50.82 -136.57 REMARK 500 LEU B 472 -1.62 65.32 REMARK 500 HIS B 481 -16.02 -146.45 REMARK 500 PRO B 483 38.97 -83.55 REMARK 500 ALA B 484 -38.30 -130.59 REMARK 500 PRO B 533 59.70 -68.31 REMARK 500 ASP B 568 79.84 -156.20 REMARK 500 LEU B 651 78.59 -150.35 REMARK 500 ARG B 674 7.63 52.17 REMARK 500 ARG B 676 50.59 -150.99 REMARK 500 PHE B 698 43.65 -142.43 REMARK 500 ASN A 142 49.96 -92.59 REMARK 500 PRO A 198 42.25 -85.25 REMARK 500 SER A 199 -11.69 70.35 REMARK 500 ASN A 200 68.19 -168.09 REMARK 500 SER A 203 172.14 179.22 REMARK 500 CYS A 244 31.31 -99.90 REMARK 500 SER A 308 -169.84 -163.27 REMARK 500 GLU A 322 14.32 -150.73 REMARK 500 GLU A 347 -3.08 68.46 REMARK 500 ARG A 379 -23.36 -140.25 REMARK 500 ALA A 448 17.22 56.66 REMARK 500 ARG A 525 -4.48 75.89 REMARK 500 ALA A 526 10.91 59.78 REMARK 500 LEU A 602 8.99 58.95 REMARK 500 GLN A 604 13.29 -140.13 REMARK 500 TRP A 645 148.40 -170.19 REMARK 500 ASN A 684 65.87 -100.72 REMARK 500 SER A 697 -169.11 -163.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-23560 RELATED DB: EMDB REMARK 900 FOCUSED HALF MAP FROM SAME DATA SET REMARK 900 RELATED ID: EMD-23561 RELATED DB: EMDB REMARK 900 RELATED ID: 7LWY RELATED DB: PDB REMARK 900 7LWY IS THE SAME PROTEIN BUT MODELED INTO THE FOCUSED EM MAP OF EMD- REMARK 900 23560 DBREF 7M12 B 37 701 UNP Q9JE95 Q9JE95_9VIRU 37 701 DBREF 7M12 A 37 701 UNP Q9JE95 Q9JE95_9VIRU 37 701 SEQRES 1 B 665 SER ASN PRO ARG LEU THR LYS VAL LEU ASP GLU MET SER SEQRES 2 B 665 LYS LYS PRO CYS VAL ASN ILE ASN GLU ILE ARG LYS MET SEQRES 3 B 665 ILE ARG ASN PHE GLN PRO GLN PHE ILE GLN PRO ARG ASN SEQRES 4 B 665 GLY ASN ARG PRO ASN ALA GLN PRO ARG THR VAL ASP SER SEQRES 5 B 665 PHE GLU TRP VAL VAL ARG ILE GLN SER THR VAL GLU THR SEQRES 6 B 665 GLN LEU LEU GLY ALA THR ASN THR VAL PRO GLN GLN THR SEQRES 7 B 665 LEU ASN LEU ASP ILE SER PHE THR ASP ASP SER THR THR SEQRES 8 B 665 ILE THR PRO ALA SER ILE PRO GLY SER ILE SER MET LEU SEQRES 9 B 665 ASP ASN SER ARG HIS ILE PRO ALA ILE GLN SER MET ILE SEQRES 10 B 665 GLN ASN PHE LYS ALA ARG TYR LEU GLY SER LEU GLN ASP SEQRES 11 B 665 THR ALA GLN LEU GLN SER PRO GLN TYR PRO GLN LEU LEU SEQRES 12 B 665 ALA TYR LEU PHE GLY GLN LEU ILE ALA ILE LYS ASP ARG SEQRES 13 B 665 LEU ASP LEU PHE ARG PRO SER ASN PRO LEU SER LEU ALA SEQRES 14 B 665 ASP ALA LEU PHE GLY PHE THR LEU ALA GLN ASN ALA ARG SEQRES 15 B 665 PRO ARG TYR ASP ASP HIS ARG HIS ALA LYS ALA CYS GLN SEQRES 16 B 665 GLY PRO LEU VAL ILE PRO ALA ALA THR ASN SER ASP CYS SEQRES 17 B 665 GLY PRO CYS GLY PHE VAL GLN ILE ASN ALA ASN GLN GLY SEQRES 18 B 665 LEU THR LEU PRO LEU GLY ALA CYS LEU PHE VAL ASN PRO SEQRES 19 B 665 GLU THR VAL ASN ASP GLN SER PHE GLN ASP PHE LEU TRP SEQRES 20 B 665 LEU ILE PHE ALA THR HIS HIS ARG MET PRO ASN GLN MET SEQRES 21 B 665 GLN ASN ASN TRP PRO PHE SER LEU ASN ILE VAL SER THR SEQRES 22 B 665 CYS ALA ALA PRO GLY ARG GLN ALA PRO HIS ALA GLY GLU SEQRES 23 B 665 LEU THR ASP GLU ARG VAL ARG LEU ALA LEU ASP THR GLY SEQRES 24 B 665 HIS ARG ILE LEU LEU SER MET PHE ASN ASP ASP GLU GLU SEQRES 25 B 665 THR LEU ARG TYR TYR GLN ARG LYS GLY ILE GLU THR MET SEQRES 26 B 665 PHE ARG PRO CYS CYS PHE TYR THR GLU GLY GLY LEU LEU SEQRES 27 B 665 ARG LYS ALA THR ARG TYR VAL SER MET VAL PRO LEU ASN SEQRES 28 B 665 GLY LEU TYR TYR TYR ASN GLY ALA THR SER TYR VAL VAL SEQRES 29 B 665 SER PRO ILE HIS THR ASP ALA HIS PRO GLY ILE THR ALA SEQRES 30 B 665 ALA ILE GLU SER PHE VAL ASP ILE MET VAL LEU GLN ALA SEQRES 31 B 665 VAL PHE SER PHE SER GLY PRO LYS VAL VAL ALA ALA LYS SEQRES 32 B 665 VAL ASN ALA SER GLN ILE ASP ALA ALA MET VAL PHE GLY SEQRES 33 B 665 PRO ALA VAL ALA GLU GLY ASP GLY PHE VAL TYR ASP PRO SEQRES 34 B 665 LEU ARG PRO ALA PRO PRO LEU SER ALA PHE TYR THR GLU SEQRES 35 B 665 PHE ILE HIS ARG PRO ALA GLU GLN ARG ILE PHE GLN MET SEQRES 36 B 665 ALA MET SER GLN ILE TYR GLY SER HIS ALA PRO LEU ILE SEQRES 37 B 665 ILE ALA ASN VAL ILE ASN SER ILE HIS ASN CYS LYS THR SEQRES 38 B 665 LYS ILE VAL ASN ASN LYS LEU ARG ALA THR PHE VAL ARG SEQRES 39 B 665 ARG PRO PRO GLY ALA PRO HIS LEU LYS ALA ASP THR ALA SEQRES 40 B 665 ILE ILE ASN ARG PHE HIS ASP PRO GLU LEU ALA TYR ALA SEQRES 41 B 665 LEU GLY ILE LEU ALA ASP GLY ILE ALA PRO LEU ASP GLY SEQRES 42 B 665 SER HIS GLU TYR ASN VAL LEU ASP GLU LEU ASP TYR LEU SEQRES 43 B 665 PHE ASN GLY GLY ASP ILE ARG ASN CYS PHE GLY LEU ASN SEQRES 44 B 665 ALA LEU ASN THR ARG GLY LEU GLY GLN ILE VAL HIS ILE SEQRES 45 B 665 ARG PRO LYS ARG GLU PRO GLY LYS ARG PRO ARG ARG GLY SEQRES 46 B 665 PHE TYR THR THR LEU ASP GLY GLN VAL HIS PRO VAL THR SEQRES 47 B 665 GLN ASP ALA PRO LEU ASP GLU ILE TYR HIS TRP ARG ASP SEQRES 48 B 665 HIS GLY ASN LEU THR ARG PRO TYR SER CYS HIS ILE LEU SEQRES 49 B 665 ASP SER GLN GLY LEU GLU PHE ALA ASP VAL SER ASN GLY SEQRES 50 B 665 ARG SER ARG GLY LYS ILE LEU VAL VAL VAL ASN SER PRO SEQRES 51 B 665 LEU LYS THR CYS ALA ALA TYR GLN GLY PRO SER PHE ALA SEQRES 52 B 665 PRO LYS SEQRES 1 A 665 SER ASN PRO ARG LEU THR LYS VAL LEU ASP GLU MET SER SEQRES 2 A 665 LYS LYS PRO CYS VAL ASN ILE ASN GLU ILE ARG LYS MET SEQRES 3 A 665 ILE ARG ASN PHE GLN PRO GLN PHE ILE GLN PRO ARG ASN SEQRES 4 A 665 GLY ASN ARG PRO ASN ALA GLN PRO ARG THR VAL ASP SER SEQRES 5 A 665 PHE GLU TRP VAL VAL ARG ILE GLN SER THR VAL GLU THR SEQRES 6 A 665 GLN LEU LEU GLY ALA THR ASN THR VAL PRO GLN GLN THR SEQRES 7 A 665 LEU ASN LEU ASP ILE SER PHE THR ASP ASP SER THR THR SEQRES 8 A 665 ILE THR PRO ALA SER ILE PRO GLY SER ILE SER MET LEU SEQRES 9 A 665 ASP ASN SER ARG HIS ILE PRO ALA ILE GLN SER MET ILE SEQRES 10 A 665 GLN ASN PHE LYS ALA ARG TYR LEU GLY SER LEU GLN ASP SEQRES 11 A 665 THR ALA GLN LEU GLN SER PRO GLN TYR PRO GLN LEU LEU SEQRES 12 A 665 ALA TYR LEU PHE GLY GLN LEU ILE ALA ILE LYS ASP ARG SEQRES 13 A 665 LEU ASP LEU PHE ARG PRO SER ASN PRO LEU SER LEU ALA SEQRES 14 A 665 ASP ALA LEU PHE GLY PHE THR LEU ALA GLN ASN ALA ARG SEQRES 15 A 665 PRO ARG TYR ASP ASP HIS ARG HIS ALA LYS ALA CYS GLN SEQRES 16 A 665 GLY PRO LEU VAL ILE PRO ALA ALA THR ASN SER ASP CYS SEQRES 17 A 665 GLY PRO CYS GLY PHE VAL GLN ILE ASN ALA ASN GLN GLY SEQRES 18 A 665 LEU THR LEU PRO LEU GLY ALA CYS LEU PHE VAL ASN PRO SEQRES 19 A 665 GLU THR VAL ASN ASP GLN SER PHE GLN ASP PHE LEU TRP SEQRES 20 A 665 LEU ILE PHE ALA THR HIS HIS ARG MET PRO ASN GLN MET SEQRES 21 A 665 GLN ASN ASN TRP PRO PHE SER LEU ASN ILE VAL SER THR SEQRES 22 A 665 CYS ALA ALA PRO GLY ARG GLN ALA PRO HIS ALA GLY GLU SEQRES 23 A 665 LEU THR ASP GLU ARG VAL ARG LEU ALA LEU ASP THR GLY SEQRES 24 A 665 HIS ARG ILE LEU LEU SER MET PHE ASN ASP ASP GLU GLU SEQRES 25 A 665 THR LEU ARG TYR TYR GLN ARG LYS GLY ILE GLU THR MET SEQRES 26 A 665 PHE ARG PRO CYS CYS PHE TYR THR GLU GLY GLY LEU LEU SEQRES 27 A 665 ARG LYS ALA THR ARG TYR VAL SER MET VAL PRO LEU ASN SEQRES 28 A 665 GLY LEU TYR TYR TYR ASN GLY ALA THR SER TYR VAL VAL SEQRES 29 A 665 SER PRO ILE HIS THR ASP ALA HIS PRO GLY ILE THR ALA SEQRES 30 A 665 ALA ILE GLU SER PHE VAL ASP ILE MET VAL LEU GLN ALA SEQRES 31 A 665 VAL PHE SER PHE SER GLY PRO LYS VAL VAL ALA ALA LYS SEQRES 32 A 665 VAL ASN ALA SER GLN ILE ASP ALA ALA MET VAL PHE GLY SEQRES 33 A 665 PRO ALA VAL ALA GLU GLY ASP GLY PHE VAL TYR ASP PRO SEQRES 34 A 665 LEU ARG PRO ALA PRO PRO LEU SER ALA PHE TYR THR GLU SEQRES 35 A 665 PHE ILE HIS ARG PRO ALA GLU GLN ARG ILE PHE GLN MET SEQRES 36 A 665 ALA MET SER GLN ILE TYR GLY SER HIS ALA PRO LEU ILE SEQRES 37 A 665 ILE ALA ASN VAL ILE ASN SER ILE HIS ASN CYS LYS THR SEQRES 38 A 665 LYS ILE VAL ASN ASN LYS LEU ARG ALA THR PHE VAL ARG SEQRES 39 A 665 ARG PRO PRO GLY ALA PRO HIS LEU LYS ALA ASP THR ALA SEQRES 40 A 665 ILE ILE ASN ARG PHE HIS ASP PRO GLU LEU ALA TYR ALA SEQRES 41 A 665 LEU GLY ILE LEU ALA ASP GLY ILE ALA PRO LEU ASP GLY SEQRES 42 A 665 SER HIS GLU TYR ASN VAL LEU ASP GLU LEU ASP TYR LEU SEQRES 43 A 665 PHE ASN GLY GLY ASP ILE ARG ASN CYS PHE GLY LEU ASN SEQRES 44 A 665 ALA LEU ASN THR ARG GLY LEU GLY GLN ILE VAL HIS ILE SEQRES 45 A 665 ARG PRO LYS ARG GLU PRO GLY LYS ARG PRO ARG ARG GLY SEQRES 46 A 665 PHE TYR THR THR LEU ASP GLY GLN VAL HIS PRO VAL THR SEQRES 47 A 665 GLN ASP ALA PRO LEU ASP GLU ILE TYR HIS TRP ARG ASP SEQRES 48 A 665 HIS GLY ASN LEU THR ARG PRO TYR SER CYS HIS ILE LEU SEQRES 49 A 665 ASP SER GLN GLY LEU GLU PHE ALA ASP VAL SER ASN GLY SEQRES 50 A 665 ARG SER ARG GLY LYS ILE LEU VAL VAL VAL ASN SER PRO SEQRES 51 A 665 LEU LYS THR CYS ALA ALA TYR GLN GLY PRO SER PHE ALA SEQRES 52 A 665 PRO LYS HELIX 1 AA1 ASN B 38 LYS B 51 1 14 HELIX 2 AA2 ASN B 55 ARG B 64 1 10 HELIX 3 AA3 HIS B 145 PHE B 156 1 12 HELIX 4 AA4 GLN B 177 PHE B 196 1 20 HELIX 5 AA5 SER B 203 GLY B 210 1 8 HELIX 6 AA6 ASN B 269 ASN B 274 1 6 HELIX 7 AA7 GLN B 276 HIS B 290 1 15 HELIX 8 AA8 PRO B 293 TRP B 300 1 8 HELIX 9 AA9 THR B 324 PHE B 343 1 20 HELIX 10 AB1 GLU B 347 GLU B 359 1 13 HELIX 11 AB2 HIS B 408 SER B 429 1 22 HELIX 12 AB3 LEU B 472 ILE B 480 1 9 HELIX 13 AB4 GLN B 486 GLY B 498 1 13 HELIX 14 AB5 ALA B 501 ASN B 514 1 14 HELIX 15 AB6 ASP B 550 GLY B 558 1 9 HELIX 16 AB7 ASN B 574 ASN B 584 1 11 HELIX 17 AB8 ASP B 587 ASN B 590 5 4 HELIX 18 AB9 CYS B 591 ALA B 596 1 6 HELIX 19 AC1 LEU B 602 ILE B 605 5 4 HELIX 20 AC2 ASP B 640 ILE B 642 5 3 HELIX 21 AC3 ASN A 38 LYS A 51 1 14 HELIX 22 AC4 ASN A 55 MET A 62 1 8 HELIX 23 AC5 HIS A 145 PHE A 156 1 12 HELIX 24 AC6 SER A 163 SER A 172 1 10 HELIX 25 AC7 PRO A 176 PHE A 196 1 21 HELIX 26 AC8 ASN A 269 ASN A 274 1 6 HELIX 27 AC9 ASP A 275 HIS A 290 1 16 HELIX 28 AD1 PRO A 293 ASN A 298 5 6 HELIX 29 AD2 THR A 324 PHE A 343 1 20 HELIX 30 AD3 GLU A 348 GLU A 359 1 12 HELIX 31 AD4 LEU A 374 THR A 378 5 5 HELIX 32 AD5 PRO A 402 ASP A 406 5 5 HELIX 33 AD6 HIS A 408 SER A 429 1 22 HELIX 34 AD7 PRO A 471 HIS A 481 1 11 HELIX 35 AD8 ARG A 482 TYR A 497 1 16 HELIX 36 AD9 HIS A 500 ASN A 514 1 15 HELIX 37 AE1 ASP A 550 GLY A 558 1 9 HELIX 38 AE2 ASN A 574 PHE A 583 1 10 HELIX 39 AE3 ASP A 587 ASN A 590 5 4 HELIX 40 AE4 CYS A 591 LEU A 597 1 7 HELIX 41 AE5 ASP A 640 ILE A 642 5 3 SHEET 1 AA1 4 ILE B 71 PRO B 73 0 SHEET 2 AA1 4 TRP B 91 ILE B 95 -1 O VAL B 92 N GLN B 72 SHEET 3 AA1 4 LEU B 117 ILE B 119 -1 O LEU B 117 N ILE B 95 SHEET 4 AA1 4 PRO B 364 CYS B 365 -1 O CYS B 365 N ASP B 118 SHEET 1 AA2 4 GLN B 113 THR B 114 0 SHEET 2 AA2 4 THR B 98 GLN B 102 -1 N VAL B 99 O GLN B 113 SHEET 3 AA2 4 LYS B 678 ASN B 684 -1 O VAL B 682 N GLU B 100 SHEET 4 AA2 4 GLY B 569 GLU B 572 -1 N HIS B 571 O ILE B 679 SHEET 1 AA3 2 ILE B 128 THR B 129 0 SHEET 2 AA3 2 VAL B 381 SER B 382 1 O VAL B 381 N THR B 129 SHEET 1 AA4 4 GLY B 248 GLN B 251 0 SHEET 2 AA4 4 LEU B 304 SER B 308 1 O ILE B 306 N GLY B 248 SHEET 3 AA4 4 ALA B 264 VAL B 268 1 N VAL B 268 O VAL B 307 SHEET 4 AA4 4 GLY B 388 TYR B 392 1 O TYR B 390 N CYS B 265 SHEET 1 AA5 3 PHE B 461 TYR B 463 0 SHEET 2 AA5 3 VAL B 435 ALA B 438 1 N ALA B 437 O TYR B 463 SHEET 3 AA5 3 ALA B 543 ILE B 544 -1 O ALA B 543 N VAL B 436 SHEET 1 AA6 2 HIS B 607 ILE B 608 0 SHEET 2 AA6 2 ALA B 637 PRO B 638 -1 O ALA B 637 N ILE B 608 SHEET 1 AA7 3 PRO B 632 VAL B 633 0 SHEET 2 AA7 3 GLY B 621 THR B 625 -1 N GLY B 621 O VAL B 633 SHEET 3 AA7 3 ILE B 659 GLN B 663 -1 O ASP B 661 N THR B 624 SHEET 1 AA8 3 VAL A 92 ILE A 95 0 SHEET 2 AA8 3 LEU A 117 SER A 120 -1 O LEU A 117 N ILE A 95 SHEET 3 AA8 3 ARG A 363 PRO A 364 -1 O ARG A 363 N SER A 120 SHEET 1 AA9 4 GLN A 113 THR A 114 0 SHEET 2 AA9 4 THR A 98 LEU A 104 -1 N VAL A 99 O GLN A 113 SHEET 3 AA9 4 LYS A 678 VAL A 683 -1 O LEU A 680 N GLN A 102 SHEET 4 AA9 4 HIS A 571 GLU A 572 -1 N HIS A 571 O ILE A 679 SHEET 1 AB1 2 ILE A 128 THR A 129 0 SHEET 2 AB1 2 VAL A 381 SER A 382 1 O VAL A 381 N THR A 129 SHEET 1 AB2 4 GLY A 248 GLN A 251 0 SHEET 2 AB2 4 ASN A 305 SER A 308 1 O ILE A 306 N VAL A 250 SHEET 3 AB2 4 ALA A 264 VAL A 268 1 N VAL A 268 O VAL A 307 SHEET 4 AB2 4 GLY A 388 TYR A 392 1 O TYR A 390 N CYS A 265 SHEET 1 AB3 3 PHE A 461 VAL A 462 0 SHEET 2 AB3 3 VAL A 435 ALA A 437 1 N ALA A 437 O PHE A 461 SHEET 3 AB3 3 ALA A 543 ILE A 544 -1 O ALA A 543 N VAL A 436 SHEET 1 AB4 3 ALA A 637 PRO A 638 0 SHEET 2 AB4 3 VAL A 606 ARG A 609 -1 N ILE A 608 O ALA A 637 SHEET 3 AB4 3 GLU A 666 ASP A 669 -1 O ALA A 668 N HIS A 607 SHEET 1 AB5 3 VAL A 630 VAL A 633 0 SHEET 2 AB5 3 GLY A 621 THR A 625 -1 N GLY A 621 O VAL A 633 SHEET 3 AB5 3 ILE A 659 GLN A 663 -1 O ASP A 661 N THR A 624 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000