data_7MED # _entry.id 7MED # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7MED pdb_00007med 10.2210/pdb7med/pdb WWPDB D_1000256054 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 7LNO unspecified PDB . 7LNQ unspecified PDB . 7LNR unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7MED _pdbx_database_status.recvd_initial_deposition_date 2021-04-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Smith, C.A.' 1 ? 'Vakulenko, S.B.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Infect Dis.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2373-8227 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first 1765 _citation.page_last 1776 _citation.title ;In Crystallo Time-Resolved Interaction of the Clostridioides difficile CDD-1 enzyme with Avibactam Provides New Insights into the Catalytic Mechanism of Class D beta-lactamases. ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acsinfecdis.1c00094 _citation.pdbx_database_id_PubMed 33908775 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stewart, N.K.' 1 ? primary 'Toth, M.' 2 ? primary 'Stasyuk, A.' 3 ? primary 'Vakulenko, S.B.' 4 ? primary 'Smith, C.A.' 5 0000-0002-1885-1511 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7MED _cell.details ? _cell.formula_units_Z ? _cell.length_a 123.436 _cell.length_a_esd ? _cell.length_b 123.436 _cell.length_b_esd ? _cell.length_c 123.436 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MED _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Beta-lactamase 28617.234 1 3.5.2.6 ? ? 'double lysine to alanine mutant Lys238Ala and Lys244Ala' 2 non-polymer syn '(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide' 267.260 1 ? ? ? ? 3 non-polymer syn 'CARBON DIOXIDE' 44.010 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 5 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 6 water nat water 18.015 149 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CDD-1 beta-lactamase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;VNIVDYSDCFEGISGGAIFCNTKNKEYNIYNKELIETRRSPCSTF(KCX)IVSTLIGLEKGVINSKESVMGYDGTDYPNK NWNKNLSLEEAFKESCVWYYKKLINKVDAKSVQNILDDLKYGNCDISEWEGDLKNGKGHLNGFWLESSLQISPKEQVQTM AKIFEGDTNFKKEHINILRDIMAIDVNDANINVYGKTGTGFDEKNKRVDAWFVGMLEREGDTYYFAIKSDDSNKEITGPK VKEIAINIIKKYYS ; _entity_poly.pdbx_seq_one_letter_code_can ;VNIVDYSDCFEGISGGAIFCNTKNKEYNIYNKELIETRRSPCSTFKIVSTLIGLEKGVINSKESVMGYDGTDYPNKNWNK NLSLEEAFKESCVWYYKKLINKVDAKSVQNILDDLKYGNCDISEWEGDLKNGKGHLNGFWLESSLQISPKEQVQTMAKIF EGDTNFKKEHINILRDIMAIDVNDANINVYGKTGTGFDEKNKRVDAWFVGMLEREGDTYYFAIKSDDSNKEITGPKVKEI AINIIKKYYS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ASN n 1 3 ILE n 1 4 VAL n 1 5 ASP n 1 6 TYR n 1 7 SER n 1 8 ASP n 1 9 CYS n 1 10 PHE n 1 11 GLU n 1 12 GLY n 1 13 ILE n 1 14 SER n 1 15 GLY n 1 16 GLY n 1 17 ALA n 1 18 ILE n 1 19 PHE n 1 20 CYS n 1 21 ASN n 1 22 THR n 1 23 LYS n 1 24 ASN n 1 25 LYS n 1 26 GLU n 1 27 TYR n 1 28 ASN n 1 29 ILE n 1 30 TYR n 1 31 ASN n 1 32 LYS n 1 33 GLU n 1 34 LEU n 1 35 ILE n 1 36 GLU n 1 37 THR n 1 38 ARG n 1 39 ARG n 1 40 SER n 1 41 PRO n 1 42 CYS n 1 43 SER n 1 44 THR n 1 45 PHE n 1 46 KCX n 1 47 ILE n 1 48 VAL n 1 49 SER n 1 50 THR n 1 51 LEU n 1 52 ILE n 1 53 GLY n 1 54 LEU n 1 55 GLU n 1 56 LYS n 1 57 GLY n 1 58 VAL n 1 59 ILE n 1 60 ASN n 1 61 SER n 1 62 LYS n 1 63 GLU n 1 64 SER n 1 65 VAL n 1 66 MET n 1 67 GLY n 1 68 TYR n 1 69 ASP n 1 70 GLY n 1 71 THR n 1 72 ASP n 1 73 TYR n 1 74 PRO n 1 75 ASN n 1 76 LYS n 1 77 ASN n 1 78 TRP n 1 79 ASN n 1 80 LYS n 1 81 ASN n 1 82 LEU n 1 83 SER n 1 84 LEU n 1 85 GLU n 1 86 GLU n 1 87 ALA n 1 88 PHE n 1 89 LYS n 1 90 GLU n 1 91 SER n 1 92 CYS n 1 93 VAL n 1 94 TRP n 1 95 TYR n 1 96 TYR n 1 97 LYS n 1 98 LYS n 1 99 LEU n 1 100 ILE n 1 101 ASN n 1 102 LYS n 1 103 VAL n 1 104 ASP n 1 105 ALA n 1 106 LYS n 1 107 SER n 1 108 VAL n 1 109 GLN n 1 110 ASN n 1 111 ILE n 1 112 LEU n 1 113 ASP n 1 114 ASP n 1 115 LEU n 1 116 LYS n 1 117 TYR n 1 118 GLY n 1 119 ASN n 1 120 CYS n 1 121 ASP n 1 122 ILE n 1 123 SER n 1 124 GLU n 1 125 TRP n 1 126 GLU n 1 127 GLY n 1 128 ASP n 1 129 LEU n 1 130 LYS n 1 131 ASN n 1 132 GLY n 1 133 LYS n 1 134 GLY n 1 135 HIS n 1 136 LEU n 1 137 ASN n 1 138 GLY n 1 139 PHE n 1 140 TRP n 1 141 LEU n 1 142 GLU n 1 143 SER n 1 144 SER n 1 145 LEU n 1 146 GLN n 1 147 ILE n 1 148 SER n 1 149 PRO n 1 150 LYS n 1 151 GLU n 1 152 GLN n 1 153 VAL n 1 154 GLN n 1 155 THR n 1 156 MET n 1 157 ALA n 1 158 LYS n 1 159 ILE n 1 160 PHE n 1 161 GLU n 1 162 GLY n 1 163 ASP n 1 164 THR n 1 165 ASN n 1 166 PHE n 1 167 LYS n 1 168 LYS n 1 169 GLU n 1 170 HIS n 1 171 ILE n 1 172 ASN n 1 173 ILE n 1 174 LEU n 1 175 ARG n 1 176 ASP n 1 177 ILE n 1 178 MET n 1 179 ALA n 1 180 ILE n 1 181 ASP n 1 182 VAL n 1 183 ASN n 1 184 ASP n 1 185 ALA n 1 186 ASN n 1 187 ILE n 1 188 ASN n 1 189 VAL n 1 190 TYR n 1 191 GLY n 1 192 LYS n 1 193 THR n 1 194 GLY n 1 195 THR n 1 196 GLY n 1 197 PHE n 1 198 ASP n 1 199 GLU n 1 200 LYS n 1 201 ASN n 1 202 LYS n 1 203 ARG n 1 204 VAL n 1 205 ASP n 1 206 ALA n 1 207 TRP n 1 208 PHE n 1 209 VAL n 1 210 GLY n 1 211 MET n 1 212 LEU n 1 213 GLU n 1 214 ARG n 1 215 GLU n 1 216 GLY n 1 217 ASP n 1 218 THR n 1 219 TYR n 1 220 TYR n 1 221 PHE n 1 222 ALA n 1 223 ILE n 1 224 LYS n 1 225 SER n 1 226 ASP n 1 227 ASP n 1 228 SER n 1 229 ASN n 1 230 LYS n 1 231 GLU n 1 232 ILE n 1 233 THR n 1 234 GLY n 1 235 PRO n 1 236 LYS n 1 237 VAL n 1 238 LYS n 1 239 GLU n 1 240 ILE n 1 241 ALA n 1 242 ILE n 1 243 ASN n 1 244 ILE n 1 245 ILE n 1 246 LYS n 1 247 LYS n 1 248 TYR n 1 249 TYR n 1 250 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 250 _entity_src_gen.gene_src_common_name 'Peptoclostridium difficile' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'blaR1_1, E5F32_07085, E5F39_11445, SAMEA3374989_01677' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridioides difficile' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1496 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A160YKM3_CLODI _struct_ref.pdbx_db_accession A0A160YKM3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VNIVDYSDCFEGISGGAIFCNTKNKEYNIYNKELIETRRSPCSTFKIVSTLIGLEKGVINSKESVMGYDGTDYPNKNWNK NLSLEEAFKESCVWYYKKLINKVDAKSVQNILDDLKYGNCDISEWEGDLKNGKGHLNGFWLESSLQISPKEQVQTMAKIF EGDTNFKKEHINILRDIMKIDVNDKNINVYGKTGTGFDEKNKRVDAWFVGMLEREGDTYYFAIKSDDSNKEITGPKVKEI AINIIKKYYS ; _struct_ref.pdbx_align_begin 60 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7MED _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 250 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A160YKM3 _struct_ref_seq.db_align_beg 60 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 309 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 60 _struct_ref_seq.pdbx_auth_seq_align_end 309 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7MED ALA A 179 ? UNP A0A160YKM3 LYS 238 'engineered mutation' 238 1 1 7MED ALA A 185 ? UNP A0A160YKM3 LYS 244 'engineered mutation' 244 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CO2 non-polymer . 'CARBON DIOXIDE' ? 'C O2' 44.010 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KCX 'L-peptide linking' n 'LYSINE NZ-CARBOXYLIC ACID' ? 'C7 H14 N2 O4' 190.197 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 NXL non-polymer . '(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide' 'avibactam, bound form; NXL104, bound form' 'C7 H13 N3 O6 S' 267.260 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7MED _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES pH 7.0, 2.4 M ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-07-09 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97946 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7MED _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.78 _reflns.d_resolution_low 39.03 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 31415 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 25.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.092 _reflns.pdbx_Rpim_I_all 0.018 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.78 _reflns_shell.d_res_low 1.82 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1757 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.435 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.733 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 99.270 _refine.B_iso_mean 30.2631 _refine.B_iso_min 14.090 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7MED _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.7800 _refine.ls_d_res_low 39.0300 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 31349 _refine.ls_number_reflns_R_free 1567 _refine.ls_number_reflns_R_work 29782 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.9100 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1968 _refine.ls_R_factor_R_free 0.2255 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1952 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.3100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.7800 _refine_hist.d_res_low 39.0300 _refine_hist.number_atoms_solvent 152 _refine_hist.number_atoms_total 2212 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 250 _refine_hist.pdbx_B_iso_mean_ligand 47.65 _refine_hist.pdbx_B_iso_mean_solvent 35.10 _refine_hist.pdbx_number_atoms_protein 2012 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 2151 'X-RAY DIFFRACTION' ? f_angle_d 1.003 ? ? 2912 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.008 ? ? 311 'X-RAY DIFFRACTION' ? f_chiral_restr 0.060 ? ? 310 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 369 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.7800 1.8400 2781 . 145 2636 99.0000 . . . 0.4153 0.0000 0.3624 . . . . . . . 11 . . . 'X-RAY DIFFRACTION' 1.8400 1.9000 2770 . 139 2631 100.0000 . . . 0.2800 0.0000 0.2635 . . . . . . . 11 . . . 'X-RAY DIFFRACTION' 1.9000 1.9800 2804 . 127 2677 100.0000 . . . 0.2686 0.0000 0.2091 . . . . . . . 11 . . . 'X-RAY DIFFRACTION' 1.9800 2.0700 2789 . 147 2642 100.0000 . . . 0.2356 0.0000 0.1890 . . . . . . . 11 . . . 'X-RAY DIFFRACTION' 2.0700 2.1800 2812 . 147 2665 100.0000 . . . 0.2378 0.0000 0.1994 . . . . . . . 11 . . . 'X-RAY DIFFRACTION' 2.1800 2.3100 2814 . 122 2692 100.0000 . . . 0.2278 0.0000 0.2101 . . . . . . . 11 . . . 'X-RAY DIFFRACTION' 2.3200 2.4900 2835 . 154 2681 100.0000 . . . 0.2524 0.0000 0.2079 . . . . . . . 11 . . . 'X-RAY DIFFRACTION' 2.4900 2.7400 2855 . 131 2724 100.0000 . . . 0.2093 0.0000 0.2015 . . . . . . . 11 . . . 'X-RAY DIFFRACTION' 2.7500 3.1400 2876 . 149 2727 100.0000 . . . 0.2313 0.0000 0.2091 . . . . . . . 11 . . . 'X-RAY DIFFRACTION' 3.1400 3.9600 2912 . 147 2765 100.0000 . . . 0.2297 0.0000 0.1726 . . . . . . . 11 . . . 'X-RAY DIFFRACTION' 3.9600 39.0300 3101 . 159 2942 100.0000 . . . 0.1879 0.0000 0.1755 . . . . . . . 11 . . . # _struct.entry_id 7MED _struct.title 'CDD-1 beta-lactamase in imidazole/MPD 5 minute avibactam complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7MED _struct_keywords.text 'Gram-positive, beta-lactamase, antibiotic resistance, inhibitor, avibactam, HYDROLASE, HYDROLASE-INHIBITOR complex' _struct_keywords.pdbx_keywords HYDROLASE/INHIBITOR # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 6 ? GLU A 11 ? TYR A 65 GLU A 70 1 ? 6 HELX_P HELX_P2 AA2 ASN A 31 ? GLU A 36 ? ASN A 90 GLU A 95 1 ? 6 HELX_P HELX_P3 AA3 PRO A 41 ? THR A 44 ? PRO A 100 THR A 103 5 ? 4 HELX_P HELX_P4 AA4 PHE A 45 ? LYS A 56 ? PHE A 104 LYS A 115 1 ? 12 HELX_P HELX_P5 AA5 ASN A 75 ? ASN A 79 ? ASN A 134 ASN A 138 5 ? 5 HELX_P HELX_P6 AA6 SER A 83 ? SER A 91 ? SER A 142 SER A 150 1 ? 9 HELX_P HELX_P7 AA7 CYS A 92 ? LYS A 102 ? CYS A 151 LYS A 161 1 ? 11 HELX_P HELX_P8 AA8 ASP A 104 ? LYS A 116 ? ASP A 163 LYS A 175 1 ? 13 HELX_P HELX_P9 AA9 ASP A 128 ? GLY A 132 ? ASP A 187 GLY A 191 5 ? 5 HELX_P HELX_P10 AB1 SER A 148 ? GLU A 161 ? SER A 207 GLU A 220 1 ? 14 HELX_P HELX_P11 AB2 LYS A 167 ? MET A 178 ? LYS A 226 MET A 237 1 ? 12 HELX_P HELX_P12 AB3 THR A 233 ? TYR A 249 ? THR A 292 TYR A 308 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A SER 43 OG ? ? ? 1_555 B NXL . CAN ? ? A SER 102 A NXL 401 1_555 ? ? ? ? ? ? ? 1.413 ? ? covale2 covale both ? A PHE 45 C ? ? ? 1_555 A KCX 46 N ? ? A PHE 104 A KCX 105 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A KCX 46 C ? ? ? 1_555 A ILE 47 N ? ? A KCX 105 A ILE 106 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 2 ? ILE A 3 ? ASN A 61 ILE A 62 AA1 2 GLU A 26 ? TYR A 30 ? GLU A 85 TYR A 89 AA1 3 GLY A 15 ? ASN A 21 ? GLY A 74 ASN A 80 AA1 4 ASP A 217 ? SER A 225 ? ASP A 276 SER A 284 AA1 5 ARG A 203 ? ARG A 214 ? ARG A 262 ARG A 273 AA1 6 ASN A 188 ? ASP A 198 ? ASN A 247 ASP A 257 AA1 7 ALA A 179 ? ILE A 180 ? ALA A 238 ILE A 239 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASN A 2 ? N ASN A 61 O ILE A 29 ? O ILE A 88 AA1 2 3 O ASN A 28 ? O ASN A 87 N PHE A 19 ? N PHE A 78 AA1 3 4 N CYS A 20 ? N CYS A 79 O TYR A 220 ? O TYR A 279 AA1 4 5 O TYR A 219 ? O TYR A 278 N LEU A 212 ? N LEU A 271 AA1 5 6 O ARG A 203 ? O ARG A 262 N ASP A 198 ? N ASP A 257 AA1 6 7 O VAL A 189 ? O VAL A 248 N ILE A 180 ? N ILE A 239 # _atom_sites.entry_id 7MED _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.008101 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008101 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008101 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 60 60 VAL VAL A . n A 1 2 ASN 2 61 61 ASN ASN A . n A 1 3 ILE 3 62 62 ILE ILE A . n A 1 4 VAL 4 63 63 VAL VAL A . n A 1 5 ASP 5 64 64 ASP ASP A . n A 1 6 TYR 6 65 65 TYR TYR A . n A 1 7 SER 7 66 66 SER SER A . n A 1 8 ASP 8 67 67 ASP ASP A . n A 1 9 CYS 9 68 68 CYS CYS A . n A 1 10 PHE 10 69 69 PHE PHE A . n A 1 11 GLU 11 70 70 GLU GLU A . n A 1 12 GLY 12 71 71 GLY GLY A . n A 1 13 ILE 13 72 72 ILE ILE A . n A 1 14 SER 14 73 73 SER SER A . n A 1 15 GLY 15 74 74 GLY GLY A . n A 1 16 GLY 16 75 75 GLY GLY A . n A 1 17 ALA 17 76 76 ALA ALA A . n A 1 18 ILE 18 77 77 ILE ILE A . n A 1 19 PHE 19 78 78 PHE PHE A . n A 1 20 CYS 20 79 79 CYS CYS A . n A 1 21 ASN 21 80 80 ASN ASN A . n A 1 22 THR 22 81 81 THR THR A . n A 1 23 LYS 23 82 82 LYS LYS A . n A 1 24 ASN 24 83 83 ASN ASN A . n A 1 25 LYS 25 84 84 LYS LYS A . n A 1 26 GLU 26 85 85 GLU GLU A . n A 1 27 TYR 27 86 86 TYR TYR A . n A 1 28 ASN 28 87 87 ASN ASN A . n A 1 29 ILE 29 88 88 ILE ILE A . n A 1 30 TYR 30 89 89 TYR TYR A . n A 1 31 ASN 31 90 90 ASN ASN A . n A 1 32 LYS 32 91 91 LYS LYS A . n A 1 33 GLU 33 92 92 GLU GLU A . n A 1 34 LEU 34 93 93 LEU LEU A . n A 1 35 ILE 35 94 94 ILE ILE A . n A 1 36 GLU 36 95 95 GLU GLU A . n A 1 37 THR 37 96 96 THR THR A . n A 1 38 ARG 38 97 97 ARG ARG A . n A 1 39 ARG 39 98 98 ARG ARG A . n A 1 40 SER 40 99 99 SER SER A . n A 1 41 PRO 41 100 100 PRO PRO A . n A 1 42 CYS 42 101 101 CYS CYS A . n A 1 43 SER 43 102 102 SER SER A . n A 1 44 THR 44 103 103 THR THR A . n A 1 45 PHE 45 104 104 PHE PHE A . n A 1 46 KCX 46 105 105 KCX KCX A . n A 1 47 ILE 47 106 106 ILE ILE A . n A 1 48 VAL 48 107 107 VAL VAL A . n A 1 49 SER 49 108 108 SER SER A . n A 1 50 THR 50 109 109 THR THR A . n A 1 51 LEU 51 110 110 LEU LEU A . n A 1 52 ILE 52 111 111 ILE ILE A . n A 1 53 GLY 53 112 112 GLY GLY A . n A 1 54 LEU 54 113 113 LEU LEU A . n A 1 55 GLU 55 114 114 GLU GLU A . n A 1 56 LYS 56 115 115 LYS LYS A . n A 1 57 GLY 57 116 116 GLY GLY A . n A 1 58 VAL 58 117 117 VAL VAL A . n A 1 59 ILE 59 118 118 ILE ILE A . n A 1 60 ASN 60 119 119 ASN ASN A . n A 1 61 SER 61 120 120 SER SER A . n A 1 62 LYS 62 121 121 LYS LYS A . n A 1 63 GLU 63 122 122 GLU GLU A . n A 1 64 SER 64 123 123 SER SER A . n A 1 65 VAL 65 124 124 VAL VAL A . n A 1 66 MET 66 125 125 MET MET A . n A 1 67 GLY 67 126 126 GLY GLY A . n A 1 68 TYR 68 127 127 TYR TYR A . n A 1 69 ASP 69 128 128 ASP ASP A . n A 1 70 GLY 70 129 129 GLY GLY A . n A 1 71 THR 71 130 130 THR THR A . n A 1 72 ASP 72 131 131 ASP ASP A . n A 1 73 TYR 73 132 132 TYR TYR A . n A 1 74 PRO 74 133 133 PRO PRO A . n A 1 75 ASN 75 134 134 ASN ASN A . n A 1 76 LYS 76 135 135 LYS LYS A . n A 1 77 ASN 77 136 136 ASN ASN A . n A 1 78 TRP 78 137 137 TRP TRP A . n A 1 79 ASN 79 138 138 ASN ASN A . n A 1 80 LYS 80 139 139 LYS LYS A . n A 1 81 ASN 81 140 140 ASN ASN A . n A 1 82 LEU 82 141 141 LEU LEU A . n A 1 83 SER 83 142 142 SER SER A . n A 1 84 LEU 84 143 143 LEU LEU A . n A 1 85 GLU 85 144 144 GLU GLU A . n A 1 86 GLU 86 145 145 GLU GLU A . n A 1 87 ALA 87 146 146 ALA ALA A . n A 1 88 PHE 88 147 147 PHE PHE A . n A 1 89 LYS 89 148 148 LYS LYS A . n A 1 90 GLU 90 149 149 GLU GLU A . n A 1 91 SER 91 150 150 SER SER A . n A 1 92 CYS 92 151 151 CYS CYS A . n A 1 93 VAL 93 152 152 VAL VAL A . n A 1 94 TRP 94 153 153 TRP TRP A . n A 1 95 TYR 95 154 154 TYR TYR A . n A 1 96 TYR 96 155 155 TYR TYR A . n A 1 97 LYS 97 156 156 LYS LYS A . n A 1 98 LYS 98 157 157 LYS LYS A . n A 1 99 LEU 99 158 158 LEU LEU A . n A 1 100 ILE 100 159 159 ILE ILE A . n A 1 101 ASN 101 160 160 ASN ASN A . n A 1 102 LYS 102 161 161 LYS LYS A . n A 1 103 VAL 103 162 162 VAL VAL A . n A 1 104 ASP 104 163 163 ASP ASP A . n A 1 105 ALA 105 164 164 ALA ALA A . n A 1 106 LYS 106 165 165 LYS LYS A . n A 1 107 SER 107 166 166 SER SER A . n A 1 108 VAL 108 167 167 VAL VAL A . n A 1 109 GLN 109 168 168 GLN GLN A . n A 1 110 ASN 110 169 169 ASN ASN A . n A 1 111 ILE 111 170 170 ILE ILE A . n A 1 112 LEU 112 171 171 LEU LEU A . n A 1 113 ASP 113 172 172 ASP ASP A . n A 1 114 ASP 114 173 173 ASP ASP A . n A 1 115 LEU 115 174 174 LEU LEU A . n A 1 116 LYS 116 175 175 LYS LYS A . n A 1 117 TYR 117 176 176 TYR TYR A . n A 1 118 GLY 118 177 177 GLY GLY A . n A 1 119 ASN 119 178 178 ASN ASN A . n A 1 120 CYS 120 179 179 CYS CYS A . n A 1 121 ASP 121 180 180 ASP ASP A . n A 1 122 ILE 122 181 181 ILE ILE A . n A 1 123 SER 123 182 182 SER SER A . n A 1 124 GLU 124 183 183 GLU GLU A . n A 1 125 TRP 125 184 184 TRP TRP A . n A 1 126 GLU 126 185 185 GLU GLU A . n A 1 127 GLY 127 186 186 GLY GLY A . n A 1 128 ASP 128 187 187 ASP ASP A . n A 1 129 LEU 129 188 188 LEU LEU A . n A 1 130 LYS 130 189 189 LYS LYS A . n A 1 131 ASN 131 190 190 ASN ASN A . n A 1 132 GLY 132 191 191 GLY GLY A . n A 1 133 LYS 133 192 192 LYS LYS A . n A 1 134 GLY 134 193 193 GLY GLY A . n A 1 135 HIS 135 194 194 HIS HIS A . n A 1 136 LEU 136 195 195 LEU LEU A . n A 1 137 ASN 137 196 196 ASN ASN A . n A 1 138 GLY 138 197 197 GLY GLY A . n A 1 139 PHE 139 198 198 PHE PHE A . n A 1 140 TRP 140 199 199 TRP TRP A . n A 1 141 LEU 141 200 200 LEU LEU A . n A 1 142 GLU 142 201 201 GLU GLU A . n A 1 143 SER 143 202 202 SER SER A . n A 1 144 SER 144 203 203 SER SER A . n A 1 145 LEU 145 204 204 LEU LEU A . n A 1 146 GLN 146 205 205 GLN GLN A . n A 1 147 ILE 147 206 206 ILE ILE A . n A 1 148 SER 148 207 207 SER SER A . n A 1 149 PRO 149 208 208 PRO PRO A . n A 1 150 LYS 150 209 209 LYS LYS A . n A 1 151 GLU 151 210 210 GLU GLU A . n A 1 152 GLN 152 211 211 GLN GLN A . n A 1 153 VAL 153 212 212 VAL VAL A . n A 1 154 GLN 154 213 213 GLN GLN A . n A 1 155 THR 155 214 214 THR THR A . n A 1 156 MET 156 215 215 MET MET A . n A 1 157 ALA 157 216 216 ALA ALA A . n A 1 158 LYS 158 217 217 LYS LYS A . n A 1 159 ILE 159 218 218 ILE ILE A . n A 1 160 PHE 160 219 219 PHE PHE A . n A 1 161 GLU 161 220 220 GLU GLU A . n A 1 162 GLY 162 221 221 GLY GLY A . n A 1 163 ASP 163 222 222 ASP ASP A . n A 1 164 THR 164 223 223 THR THR A . n A 1 165 ASN 165 224 224 ASN ASN A . n A 1 166 PHE 166 225 225 PHE PHE A . n A 1 167 LYS 167 226 226 LYS LYS A . n A 1 168 LYS 168 227 227 LYS LYS A . n A 1 169 GLU 169 228 228 GLU GLU A . n A 1 170 HIS 170 229 229 HIS HIS A . n A 1 171 ILE 171 230 230 ILE ILE A . n A 1 172 ASN 172 231 231 ASN ASN A . n A 1 173 ILE 173 232 232 ILE ILE A . n A 1 174 LEU 174 233 233 LEU LEU A . n A 1 175 ARG 175 234 234 ARG ARG A . n A 1 176 ASP 176 235 235 ASP ASP A . n A 1 177 ILE 177 236 236 ILE ILE A . n A 1 178 MET 178 237 237 MET MET A . n A 1 179 ALA 179 238 238 ALA ALA A . n A 1 180 ILE 180 239 239 ILE ILE A . n A 1 181 ASP 181 240 240 ASP ASP A . n A 1 182 VAL 182 241 241 VAL VAL A . n A 1 183 ASN 183 242 242 ASN ASN A . n A 1 184 ASP 184 243 243 ASP ASP A . n A 1 185 ALA 185 244 244 ALA ALA A . n A 1 186 ASN 186 245 245 ASN ASN A . n A 1 187 ILE 187 246 246 ILE ILE A . n A 1 188 ASN 188 247 247 ASN ASN A . n A 1 189 VAL 189 248 248 VAL VAL A . n A 1 190 TYR 190 249 249 TYR TYR A . n A 1 191 GLY 191 250 250 GLY GLY A . n A 1 192 LYS 192 251 251 LYS LYS A . n A 1 193 THR 193 252 252 THR THR A . n A 1 194 GLY 194 253 253 GLY GLY A . n A 1 195 THR 195 254 254 THR THR A . n A 1 196 GLY 196 255 255 GLY GLY A . n A 1 197 PHE 197 256 256 PHE PHE A . n A 1 198 ASP 198 257 257 ASP ASP A . n A 1 199 GLU 199 258 258 GLU GLU A . n A 1 200 LYS 200 259 259 LYS LYS A . n A 1 201 ASN 201 260 260 ASN ASN A . n A 1 202 LYS 202 261 261 LYS LYS A . n A 1 203 ARG 203 262 262 ARG ARG A . n A 1 204 VAL 204 263 263 VAL VAL A . n A 1 205 ASP 205 264 264 ASP ASP A . n A 1 206 ALA 206 265 265 ALA ALA A . n A 1 207 TRP 207 266 266 TRP TRP A . n A 1 208 PHE 208 267 267 PHE PHE A . n A 1 209 VAL 209 268 268 VAL VAL A . n A 1 210 GLY 210 269 269 GLY GLY A . n A 1 211 MET 211 270 270 MET MET A . n A 1 212 LEU 212 271 271 LEU LEU A . n A 1 213 GLU 213 272 272 GLU GLU A . n A 1 214 ARG 214 273 273 ARG ARG A . n A 1 215 GLU 215 274 274 GLU GLU A . n A 1 216 GLY 216 275 275 GLY GLY A . n A 1 217 ASP 217 276 276 ASP ASP A . n A 1 218 THR 218 277 277 THR THR A . n A 1 219 TYR 219 278 278 TYR TYR A . n A 1 220 TYR 220 279 279 TYR TYR A . n A 1 221 PHE 221 280 280 PHE PHE A . n A 1 222 ALA 222 281 281 ALA ALA A . n A 1 223 ILE 223 282 282 ILE ILE A . n A 1 224 LYS 224 283 283 LYS LYS A . n A 1 225 SER 225 284 284 SER SER A . n A 1 226 ASP 226 285 285 ASP ASP A . n A 1 227 ASP 227 286 286 ASP ASP A . n A 1 228 SER 228 287 287 SER SER A . n A 1 229 ASN 229 288 288 ASN ASN A . n A 1 230 LYS 230 289 289 LYS LYS A . n A 1 231 GLU 231 290 290 GLU GLU A . n A 1 232 ILE 232 291 291 ILE ILE A . n A 1 233 THR 233 292 292 THR THR A . n A 1 234 GLY 234 293 293 GLY GLY A . n A 1 235 PRO 235 294 294 PRO PRO A . n A 1 236 LYS 236 295 295 LYS LYS A . n A 1 237 VAL 237 296 296 VAL VAL A . n A 1 238 LYS 238 297 297 LYS LYS A . n A 1 239 GLU 239 298 298 GLU GLU A . n A 1 240 ILE 240 299 299 ILE ILE A . n A 1 241 ALA 241 300 300 ALA ALA A . n A 1 242 ILE 242 301 301 ILE ILE A . n A 1 243 ASN 243 302 302 ASN ASN A . n A 1 244 ILE 244 303 303 ILE ILE A . n A 1 245 ILE 245 304 304 ILE ILE A . n A 1 246 LYS 246 305 305 LYS LYS A . n A 1 247 LYS 247 306 306 LYS LYS A . n A 1 248 TYR 248 307 307 TYR TYR A . n A 1 249 TYR 249 308 308 TYR TYR A . n A 1 250 SER 250 309 309 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL 1 401 401 NXL NXL A . C 3 CO2 1 402 1 CO2 CO2 A . D 4 SO4 1 403 2 SO4 SO4 A . E 4 SO4 1 404 4 SO4 SO4 A . F 4 SO4 1 405 5 SO4 SO4 A . G 4 SO4 1 406 6 SO4 SO4 A . H 5 MPD 1 407 1 MPD MPD A . I 6 HOH 1 501 96 HOH HOH A . I 6 HOH 2 502 141 HOH HOH A . I 6 HOH 3 503 155 HOH HOH A . I 6 HOH 4 504 148 HOH HOH A . I 6 HOH 5 505 101 HOH HOH A . I 6 HOH 6 506 78 HOH HOH A . I 6 HOH 7 507 99 HOH HOH A . I 6 HOH 8 508 149 HOH HOH A . I 6 HOH 9 509 48 HOH HOH A . I 6 HOH 10 510 113 HOH HOH A . I 6 HOH 11 511 24 HOH HOH A . I 6 HOH 12 512 98 HOH HOH A . I 6 HOH 13 513 41 HOH HOH A . I 6 HOH 14 514 17 HOH HOH A . I 6 HOH 15 515 43 HOH HOH A . I 6 HOH 16 516 33 HOH HOH A . I 6 HOH 17 517 8 HOH HOH A . I 6 HOH 18 518 144 HOH HOH A . I 6 HOH 19 519 80 HOH HOH A . I 6 HOH 20 520 16 HOH HOH A . I 6 HOH 21 521 111 HOH HOH A . I 6 HOH 22 522 54 HOH HOH A . I 6 HOH 23 523 126 HOH HOH A . I 6 HOH 24 524 154 HOH HOH A . I 6 HOH 25 525 129 HOH HOH A . I 6 HOH 26 526 139 HOH HOH A . I 6 HOH 27 527 85 HOH HOH A . I 6 HOH 28 528 29 HOH HOH A . I 6 HOH 29 529 65 HOH HOH A . I 6 HOH 30 530 50 HOH HOH A . I 6 HOH 31 531 39 HOH HOH A . I 6 HOH 32 532 58 HOH HOH A . I 6 HOH 33 533 112 HOH HOH A . I 6 HOH 34 534 42 HOH HOH A . I 6 HOH 35 535 64 HOH HOH A . I 6 HOH 36 536 158 HOH HOH A . I 6 HOH 37 537 31 HOH HOH A . I 6 HOH 38 538 145 HOH HOH A . I 6 HOH 39 539 153 HOH HOH A . I 6 HOH 40 540 81 HOH HOH A . I 6 HOH 41 541 10 HOH HOH A . I 6 HOH 42 542 108 HOH HOH A . I 6 HOH 43 543 91 HOH HOH A . I 6 HOH 44 544 104 HOH HOH A . I 6 HOH 45 545 92 HOH HOH A . I 6 HOH 46 546 13 HOH HOH A . I 6 HOH 47 547 131 HOH HOH A . I 6 HOH 48 548 137 HOH HOH A . I 6 HOH 49 549 46 HOH HOH A . I 6 HOH 50 550 103 HOH HOH A . I 6 HOH 51 551 52 HOH HOH A . I 6 HOH 52 552 150 HOH HOH A . I 6 HOH 53 553 19 HOH HOH A . I 6 HOH 54 554 35 HOH HOH A . I 6 HOH 55 555 32 HOH HOH A . I 6 HOH 56 556 116 HOH HOH A . I 6 HOH 57 557 22 HOH HOH A . I 6 HOH 58 558 37 HOH HOH A . I 6 HOH 59 559 15 HOH HOH A . I 6 HOH 60 560 82 HOH HOH A . I 6 HOH 61 561 55 HOH HOH A . I 6 HOH 62 562 21 HOH HOH A . I 6 HOH 63 563 107 HOH HOH A . I 6 HOH 64 564 124 HOH HOH A . I 6 HOH 65 565 18 HOH HOH A . I 6 HOH 66 566 63 HOH HOH A . I 6 HOH 67 567 120 HOH HOH A . I 6 HOH 68 568 12 HOH HOH A . I 6 HOH 69 569 136 HOH HOH A . I 6 HOH 70 570 118 HOH HOH A . I 6 HOH 71 571 122 HOH HOH A . I 6 HOH 72 572 72 HOH HOH A . I 6 HOH 73 573 14 HOH HOH A . I 6 HOH 74 574 147 HOH HOH A . I 6 HOH 75 575 57 HOH HOH A . I 6 HOH 76 576 115 HOH HOH A . I 6 HOH 77 577 26 HOH HOH A . I 6 HOH 78 578 114 HOH HOH A . I 6 HOH 79 579 95 HOH HOH A . I 6 HOH 80 580 30 HOH HOH A . I 6 HOH 81 581 159 HOH HOH A . I 6 HOH 82 582 25 HOH HOH A . I 6 HOH 83 583 146 HOH HOH A . I 6 HOH 84 584 66 HOH HOH A . I 6 HOH 85 585 27 HOH HOH A . I 6 HOH 86 586 119 HOH HOH A . I 6 HOH 87 587 36 HOH HOH A . I 6 HOH 88 588 45 HOH HOH A . I 6 HOH 89 589 60 HOH HOH A . I 6 HOH 90 590 106 HOH HOH A . I 6 HOH 91 591 73 HOH HOH A . I 6 HOH 92 592 5 HOH HOH A . I 6 HOH 93 593 135 HOH HOH A . I 6 HOH 94 594 117 HOH HOH A . I 6 HOH 95 595 90 HOH HOH A . I 6 HOH 96 596 143 HOH HOH A . I 6 HOH 97 597 9 HOH HOH A . I 6 HOH 98 598 38 HOH HOH A . I 6 HOH 99 599 94 HOH HOH A . I 6 HOH 100 600 140 HOH HOH A . I 6 HOH 101 601 11 HOH HOH A . I 6 HOH 102 602 51 HOH HOH A . I 6 HOH 103 603 2 HOH HOH A . I 6 HOH 104 604 134 HOH HOH A . I 6 HOH 105 605 102 HOH HOH A . I 6 HOH 106 606 105 HOH HOH A . I 6 HOH 107 607 123 HOH HOH A . I 6 HOH 108 608 100 HOH HOH A . I 6 HOH 109 609 40 HOH HOH A . I 6 HOH 110 610 97 HOH HOH A . I 6 HOH 111 611 67 HOH HOH A . I 6 HOH 112 612 44 HOH HOH A . I 6 HOH 113 613 34 HOH HOH A . I 6 HOH 114 614 142 HOH HOH A . I 6 HOH 115 615 28 HOH HOH A . I 6 HOH 116 616 74 HOH HOH A . I 6 HOH 117 617 23 HOH HOH A . I 6 HOH 118 618 59 HOH HOH A . I 6 HOH 119 619 110 HOH HOH A . I 6 HOH 120 620 130 HOH HOH A . I 6 HOH 121 621 138 HOH HOH A . I 6 HOH 122 622 83 HOH HOH A . I 6 HOH 123 623 70 HOH HOH A . I 6 HOH 124 624 88 HOH HOH A . I 6 HOH 125 625 3 HOH HOH A . I 6 HOH 126 626 7 HOH HOH A . I 6 HOH 127 627 61 HOH HOH A . I 6 HOH 128 628 75 HOH HOH A . I 6 HOH 129 629 47 HOH HOH A . I 6 HOH 130 630 53 HOH HOH A . I 6 HOH 131 631 62 HOH HOH A . I 6 HOH 132 632 84 HOH HOH A . I 6 HOH 133 633 132 HOH HOH A . I 6 HOH 134 634 157 HOH HOH A . I 6 HOH 135 635 109 HOH HOH A . I 6 HOH 136 636 79 HOH HOH A . I 6 HOH 137 637 87 HOH HOH A . I 6 HOH 138 638 77 HOH HOH A . I 6 HOH 139 639 86 HOH HOH A . I 6 HOH 140 640 71 HOH HOH A . I 6 HOH 141 641 56 HOH HOH A . I 6 HOH 142 642 93 HOH HOH A . I 6 HOH 143 643 76 HOH HOH A . I 6 HOH 144 644 133 HOH HOH A . I 6 HOH 145 645 127 HOH HOH A . I 6 HOH 146 646 6 HOH HOH A . I 6 HOH 147 647 89 HOH HOH A . I 6 HOH 148 648 4 HOH HOH A . I 6 HOH 149 649 156 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id KCX _pdbx_struct_mod_residue.label_seq_id 46 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id KCX _pdbx_struct_mod_residue.auth_seq_id 105 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 403 ? D SO4 . 2 1 A SO4 403 ? D SO4 . 3 1 A HOH 609 ? I HOH . 4 1 A HOH 649 ? I HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19_4092 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 5 # _pdbx_entry_details.entry_id 7MED _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 84 ? ? 34.43 35.73 2 1 ASN A 90 ? ? 67.97 69.13 3 1 CYS A 101 ? ? 49.61 -140.28 4 1 ASN A 138 ? ? -91.58 50.10 5 1 GLU A 183 ? ? -100.40 69.24 6 1 SER A 202 ? ? -141.86 -142.20 7 1 GLU A 274 ? ? 47.56 81.20 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NXL _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NXL _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide' NXL 3 'CARBON DIOXIDE' CO2 4 'SULFATE ION' SO4 5 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 6 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #