data_7NBL # _entry.id 7NBL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7NBL pdb_00007nbl 10.2210/pdb7nbl/pdb WWPDB D_1292113668 ? ? BMRB 34595 ? 10.13018/BMR34595 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-04-07 2 'Structure model' 1 1 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7NBL _pdbx_database_status.recvd_initial_deposition_date 2021-01-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Structure with the same modification' 7NBK unspecified BMRB ;Solution structure of DNA:RNA hybrid containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification ; 34595 unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Cabrero, C.' 1 ? 'Martin-Pintado, N.' 2 ? 'Mazzini, S.' 3 ? 'Gargallo, R.' 4 ? 'Eritja, R.' 5 ? 'Avino, A.' 6 ? 'Gonzalez, C.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chemistry _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0947-6539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural Effects of Incorporation of 2 -Deoxy-2 2 -difluorodeoxycytidine (Gemcitabine) in A- and B-form Duplexes.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/chem.202100503 _citation.pdbx_database_id_PubMed 33772916 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cabrero, C.' 1 ? primary 'Martin-Pintado, N.' 2 ? primary 'Mazzini, S.' 3 ? primary 'Gargallo, R.' 4 ? primary 'Eritja, R.' 5 ? primary 'Avino, A.' 6 ? primary 'Gonzalez, C.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*AP*(FFC)P*AP*CP*GP*G)-3') ; 2447.587 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3') ; 2542.561 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DT)(DA)(U7B)(DA)(DC)(DG)(DG)' CTACACGG A ? 2 polyribonucleotide no no CCGUGUAG CCGUGUAG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DA n 1 4 U7B n 1 5 DA n 1 6 DC n 1 7 DG n 1 8 DG n 2 1 C n 2 2 C n 2 3 G n 2 4 U n 2 5 G n 2 6 U n 2 7 A n 2 8 G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 8 'synthetic construct' ? 32630 ? 2 1 sample 1 8 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U7B 'DNA linking' n "2'-deoxy-2'2'-difluorodeoxycytidine" ;[(2~{R},3~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4,4-bis(fluoranyl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphite ; 'C9 H12 F2 N3 O7 P' 343.178 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 U7B 4 4 4 U7B FFC A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n B 2 1 C 1 9 9 C C B . n B 2 2 C 2 10 10 C C B . n B 2 3 G 3 11 11 G G B . n B 2 4 U 4 12 12 U U B . n B 2 5 G 5 13 13 G G B . n B 2 6 U 6 14 14 U U B . n B 2 7 A 7 15 15 A A B . n B 2 8 G 8 16 16 G G B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7NBL _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7NBL _struct.title ;Solution structure of DNA:RNA hybrid containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7NBL _struct_keywords.text 'Fluorine modification, modified DNA, gemcitabine, DNA-RNA HYBRID' _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7NBL 7NBL ? 1 ? 1 2 PDB 7NBL 7NBL ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7NBL A 1 ? 8 ? 7NBL 1 ? 8 ? 1 8 2 2 7NBL B 1 ? 8 ? 7NBL 9 ? 16 ? 9 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 850 ? 1 MORE -1 ? 1 'SSA (A^2)' 3230 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 3 "O3'" ? ? ? 1_555 A U7B 4 P ? ? A DA 3 A U7B 4 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale2 covale one ? A U7B 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A U7B 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.590 ? ? hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B A 7 N1 ? ? A DT 2 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B A 7 N6 ? ? A DT 2 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B U 6 N3 ? ? A DA 3 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B U 6 O4 ? ? A DA 3 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U7B 4 N3 ? ? ? 1_555 B G 5 N1 ? ? A U7B 4 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U7B 4 N4 ? ? ? 1_555 B G 5 O6 ? ? A U7B 4 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U7B 4 O2 ? ? ? 1_555 B G 5 N2 ? ? A U7B 4 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B U 4 N3 ? ? A DA 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B U 4 O4 ? ? A DA 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B G 3 N1 ? ? A DC 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B G 3 O6 ? ? A DC 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B G 3 N2 ? ? A DC 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B C 2 N3 ? ? A DG 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B C 2 O2 ? ? A DG 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B C 2 N4 ? ? A DG 7 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B C 1 N3 ? ? A DG 8 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B C 1 O2 ? ? A DG 8 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B C 1 N4 ? ? A DG 8 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.59 2 2 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.57 3 3 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.54 4 4 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.55 5 5 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.55 6 6 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.60 7 7 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.54 8 10 "HO2'" B A 15 ? ? "O5'" B G 16 ? ? 1.58 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.20 108.30 2.90 0.30 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 113.30 118.00 -4.70 0.70 N 3 1 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 124.95 120.20 4.75 0.70 N 4 1 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.20 122.90 -3.70 0.60 N 5 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.23 108.30 1.93 0.30 N 6 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.20 118.60 -4.40 0.60 N 7 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.91 108.30 3.61 0.30 N 8 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.54 108.30 2.24 0.30 N 9 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.55 108.30 2.25 0.30 N 10 1 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 113.16 108.50 4.66 0.70 N 11 1 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 113.53 108.50 5.03 0.70 N 12 1 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 106.52 101.50 5.02 0.80 N 13 1 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 115.84 108.50 7.34 0.70 N 14 1 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.34 117.00 -3.66 0.50 N 15 1 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.89 118.60 -3.71 0.60 N 16 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.00 108.30 2.70 0.30 N 17 2 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.56 118.90 3.66 0.60 N 18 2 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 111.72 118.00 -6.28 0.70 N 19 2 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 126.39 120.20 6.19 0.70 N 20 2 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.78 122.90 -4.12 0.60 N 21 2 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.76 118.60 -3.84 0.60 N 22 2 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.70 108.30 3.40 0.30 N 23 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.23 108.30 2.93 0.30 N 24 2 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.68 108.30 2.38 0.30 N 25 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.54 108.30 5.24 0.30 N 26 2 "O5'" B C 9 ? ? "C5'" B C 9 ? ? "C4'" B C 9 ? ? 102.72 109.40 -6.68 0.80 N 27 2 N3 B C 9 ? ? C2 B C 9 ? ? O2 B C 9 ? ? 117.35 121.90 -4.55 0.70 N 28 2 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.47 108.50 4.97 0.70 N 29 2 N3 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 117.64 121.90 -4.26 0.70 N 30 2 "O4'" B G 11 ? ? "C1'" B G 11 ? ? N9 B G 11 ? ? 113.01 108.50 4.51 0.70 N 31 2 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 113.72 108.50 5.22 0.70 N 32 2 C5 B U 12 ? ? C6 B U 12 ? ? N1 B U 12 ? ? 119.62 122.70 -3.08 0.50 N 33 2 C5 B U 14 ? ? C6 B U 14 ? ? N1 B U 14 ? ? 119.55 122.70 -3.15 0.50 N 34 2 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 107.50 101.50 6.00 0.80 N 35 2 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 115.32 108.50 6.82 0.70 N 36 2 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.34 117.00 -3.66 0.50 N 37 2 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.55 118.60 -4.05 0.60 N 38 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.88 108.30 2.58 0.30 N 39 3 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 124.65 120.20 4.45 0.70 N 40 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.74 108.30 2.44 0.30 N 41 3 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.24 122.90 -3.66 0.60 N 42 3 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.31 118.60 -4.29 0.60 N 43 3 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.40 108.30 2.10 0.30 N 44 3 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.69 121.90 -4.21 0.70 N 45 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.41 108.30 3.11 0.30 N 46 3 "C5'" B C 9 ? ? "C4'" B C 9 ? ? "O4'" B C 9 ? ? 115.20 109.80 5.40 0.90 N 47 3 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.42 108.50 4.92 0.70 N 48 3 "O4'" B G 11 ? ? "C1'" B G 11 ? ? N9 B G 11 ? ? 113.64 108.50 5.14 0.70 N 49 3 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 112.83 108.50 4.33 0.70 N 50 3 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 106.93 101.50 5.43 0.80 N 51 3 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 115.47 108.50 6.97 0.70 N 52 3 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.14 117.00 -3.86 0.50 N 53 3 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.42 118.60 -4.18 0.60 N 54 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.11 108.30 1.81 0.30 N 55 4 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 113.16 118.00 -4.84 0.70 N 56 4 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.00 120.20 4.80 0.70 N 57 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.21 108.30 1.91 0.30 N 58 4 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.70 118.60 -3.90 0.60 N 59 4 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.52 108.30 3.22 0.30 N 60 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.53 108.30 2.23 0.30 N 61 4 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.36 108.30 2.06 0.30 N 62 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.10 108.30 3.80 0.30 N 63 4 "O4'" B C 9 ? ? "C1'" B C 9 ? ? N1 B C 9 ? ? 113.01 108.50 4.51 0.70 N 64 4 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.23 108.50 4.73 0.70 N 65 4 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 113.19 108.50 4.69 0.70 N 66 4 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 113.25 108.50 4.75 0.70 N 67 4 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 106.88 101.50 5.38 0.80 N 68 4 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 114.92 108.50 6.42 0.70 N 69 4 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.27 117.00 -3.73 0.50 N 70 4 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.50 118.60 -4.10 0.60 N 71 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.51 108.30 2.21 0.30 N 72 5 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 113.00 118.00 -5.00 0.70 N 73 5 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.25 120.20 5.05 0.70 N 74 5 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.18 122.90 -3.72 0.60 N 75 5 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 113.96 117.00 -3.04 0.50 N 76 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.04 108.30 2.74 0.30 N 77 5 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.96 108.30 2.66 0.30 N 78 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.84 108.30 3.54 0.30 N 79 5 "O4'" B C 9 ? ? "C1'" B C 9 ? ? N1 B C 9 ? ? 113.29 108.50 4.79 0.70 N 80 5 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 112.89 108.50 4.39 0.70 N 81 5 "O5'" B U 12 ? ? P B U 12 ? ? OP2 B U 12 ? ? 99.82 105.70 -5.88 0.90 N 82 5 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.72 108.50 6.22 0.70 N 83 5 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 106.65 101.50 5.15 0.80 N 84 5 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 115.78 108.50 7.28 0.70 N 85 5 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.13 117.00 -3.87 0.50 N 86 5 C6 B A 15 ? ? C5 B A 15 ? ? N7 B A 15 ? ? 136.73 132.30 4.43 0.70 N 87 5 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.79 118.60 -4.81 0.60 N 88 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.60 108.30 2.30 0.30 N 89 6 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 113.50 118.00 -4.50 0.70 N 90 6 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.08 120.20 4.88 0.70 N 91 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.55 108.30 2.25 0.30 N 92 6 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.72 122.90 -4.18 0.60 N 93 6 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.12 108.30 1.82 0.30 N 94 6 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.76 118.60 -3.84 0.60 N 95 6 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.47 108.30 3.17 0.30 N 96 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.20 108.30 1.90 0.30 N 97 6 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.10 108.30 2.80 0.30 N 98 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.25 108.30 2.95 0.30 N 99 6 "O4'" B C 9 ? ? "C1'" B C 9 ? ? N1 B C 9 ? ? 112.81 108.50 4.31 0.70 N 100 6 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 112.94 108.50 4.44 0.70 N 101 6 "O4'" B G 11 ? ? "C1'" B G 11 ? ? N9 B G 11 ? ? 112.95 108.50 4.45 0.70 N 102 6 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 112.77 108.50 4.27 0.70 N 103 6 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.48 108.50 5.98 0.70 N 104 6 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 107.03 101.50 5.53 0.80 N 105 6 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 115.40 108.50 6.90 0.70 N 106 6 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.17 117.00 -3.83 0.50 N 107 6 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.42 118.60 -4.18 0.60 N 108 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.32 108.30 2.02 0.30 N 109 7 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 124.68 120.20 4.48 0.70 N 110 7 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.50 122.90 -4.40 0.60 N 111 7 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.32 108.30 2.02 0.30 N 112 7 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.87 108.30 2.57 0.30 N 113 7 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.13 108.30 1.83 0.30 N 114 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.20 108.30 2.90 0.30 N 115 7 "O4'" B C 9 ? ? "C1'" B C 9 ? ? N1 B C 9 ? ? 113.05 108.50 4.55 0.70 N 116 7 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 112.94 108.50 4.44 0.70 N 117 7 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 114.45 108.50 5.95 0.70 N 118 7 "O4'" B G 13 ? ? "C1'" B G 13 ? ? N9 B G 13 ? ? 112.75 108.50 4.25 0.70 N 119 7 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.09 108.50 5.59 0.70 N 120 7 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 106.47 101.50 4.97 0.80 N 121 7 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 114.93 108.50 6.43 0.70 N 122 7 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.34 117.00 -3.66 0.50 N 123 7 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.38 118.60 -4.22 0.60 N 124 8 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 113.47 118.00 -4.53 0.70 N 125 8 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.03 120.20 4.83 0.70 N 126 8 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.47 108.30 2.17 0.30 N 127 8 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.02 122.90 -3.88 0.60 N 128 8 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.70 118.60 -3.90 0.60 N 129 8 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.85 108.30 2.55 0.30 N 130 8 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.14 108.30 2.84 0.30 N 131 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.05 108.30 2.75 0.30 N 132 8 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.15 108.50 5.65 0.70 N 133 8 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 114.09 108.50 5.59 0.70 N 134 8 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.71 117.00 -3.29 0.50 N 135 8 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.62 118.60 -3.98 0.60 N 136 8 "C5'" B G 16 ? ? "C4'" B G 16 ? ? "O4'" B G 16 ? ? 115.51 109.80 5.71 0.90 N 137 8 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 113.02 108.50 4.52 0.70 N 138 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.11 108.30 2.81 0.30 N 139 9 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 113.41 118.00 -4.59 0.70 N 140 9 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.23 120.20 5.03 0.70 N 141 9 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.64 108.30 2.34 0.30 N 142 9 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.11 108.30 2.81 0.30 N 143 9 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 112.20 108.30 3.90 0.30 N 144 9 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.95 108.30 3.65 0.30 N 145 9 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.32 108.50 4.82 0.70 N 146 9 "O4'" B G 13 ? ? "C1'" B G 13 ? ? N9 B G 13 ? ? 113.10 108.50 4.60 0.70 N 147 9 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 115.42 108.50 6.92 0.70 N 148 9 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 114.25 108.50 5.75 0.70 N 149 9 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.26 117.00 -3.74 0.50 N 150 9 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 114.56 108.50 6.06 0.70 N 151 10 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 112.44 118.00 -5.56 0.70 N 152 10 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.63 120.20 5.43 0.70 N 153 10 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.98 122.90 -3.92 0.60 N 154 10 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.43 108.30 2.13 0.30 N 155 10 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.69 118.60 -3.91 0.60 N 156 10 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.71 108.30 2.41 0.30 N 157 10 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.47 108.30 2.17 0.30 N 158 10 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.41 108.30 2.11 0.30 N 159 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.45 108.30 3.15 0.30 N 160 10 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.35 108.50 5.85 0.70 N 161 10 "C3'" B A 15 ? ? "C2'" B A 15 ? ? "C1'" B A 15 ? ? 106.67 101.50 5.17 0.80 N 162 10 "O4'" B A 15 ? ? "C1'" B A 15 ? ? N9 B A 15 ? ? 114.48 108.50 5.98 0.70 N 163 10 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.47 117.00 -3.53 0.50 N 164 10 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.50 118.60 -4.10 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 1 ? ? 0.077 'SIDE CHAIN' 2 1 DG A 7 ? ? 0.056 'SIDE CHAIN' 3 1 C B 9 ? ? 0.061 'SIDE CHAIN' 4 1 A B 15 ? ? 0.070 'SIDE CHAIN' 5 2 C B 10 ? ? 0.068 'SIDE CHAIN' 6 2 A B 15 ? ? 0.074 'SIDE CHAIN' 7 3 DC A 1 ? ? 0.064 'SIDE CHAIN' 8 3 C B 10 ? ? 0.064 'SIDE CHAIN' 9 3 G B 11 ? ? 0.050 'SIDE CHAIN' 10 3 G B 13 ? ? 0.080 'SIDE CHAIN' 11 3 A B 15 ? ? 0.065 'SIDE CHAIN' 12 4 DC A 1 ? ? 0.070 'SIDE CHAIN' 13 4 A B 15 ? ? 0.081 'SIDE CHAIN' 14 5 DC A 1 ? ? 0.090 'SIDE CHAIN' 15 5 C B 10 ? ? 0.070 'SIDE CHAIN' 16 5 G B 11 ? ? 0.055 'SIDE CHAIN' 17 5 A B 15 ? ? 0.075 'SIDE CHAIN' 18 6 G B 11 ? ? 0.057 'SIDE CHAIN' 19 6 A B 15 ? ? 0.087 'SIDE CHAIN' 20 6 G B 16 ? ? 0.065 'SIDE CHAIN' 21 7 DC A 1 ? ? 0.066 'SIDE CHAIN' 22 7 C B 9 ? ? 0.063 'SIDE CHAIN' 23 7 G B 11 ? ? 0.064 'SIDE CHAIN' 24 7 A B 15 ? ? 0.074 'SIDE CHAIN' 25 8 DC A 1 ? ? 0.064 'SIDE CHAIN' 26 8 C B 9 ? ? 0.068 'SIDE CHAIN' 27 8 C B 10 ? ? 0.069 'SIDE CHAIN' 28 8 G B 16 ? ? 0.077 'SIDE CHAIN' 29 9 DC A 1 ? ? 0.094 'SIDE CHAIN' 30 9 C B 9 ? ? 0.066 'SIDE CHAIN' 31 9 G B 11 ? ? 0.075 'SIDE CHAIN' 32 9 G B 16 ? ? 0.070 'SIDE CHAIN' 33 10 C B 9 ? ? 0.061 'SIDE CHAIN' 34 10 C B 10 ? ? 0.067 'SIDE CHAIN' 35 10 G B 11 ? ? 0.069 'SIDE CHAIN' 36 10 A B 15 ? ? 0.073 'SIDE CHAIN' 37 10 G B 16 ? ? 0.061 'SIDE CHAIN' # _pdbx_entry_details.entry_id 7NBL _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 7NBL _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7NBL _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;0.5 M DNA (5'-D(*CP*TP*AP*(FFC)P*AP*CP*GP*G)-3'), 0.5 M RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3'), 25 mM sodium phosphate, 100 mM sodium chloride, 0.5 % v/v DSS, 90% H2O/10% D2O ; '90% H2O/10% D2O' DiFs_Hybrid solution ? 2 ;0.5 M DNA (5'-D(*CP*TP*AP*(FFC)P*AP*CP*GP*G)-3'), 0.5 M RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3'), 25 mM sodium phosphate, 100 mM sodium chloride, 0.5 % v/v DSS, 100% D2O ; '100% D2O' DiFs_Hybrid_D2O solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*CP*TP*AP*(FFC)P*AP*CP*GP*G)-3') ; 0.5 ? M 'natural abundance' 1 ;RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3') ; 0.5 ? M 'natural abundance' 1 'sodium phosphate' 25 ? mM 'natural abundance' 1 'sodium chloride' 100 ? mM 'natural abundance' 1 DSS 0.5 ? '% v/v' 'natural abundance' 2 ;DNA (5'-D(*CP*TP*AP*(FFC)P*AP*CP*GP*G)-3') ; 0.5 ? M 'natural abundance' 2 ;RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3') ; 0.5 ? M 'natural abundance' 2 'sodium phosphate' 25 ? mM 'natural abundance' 2 'sodium chloride' 100 ? mM 'natural abundance' 2 DSS 0.5 ? '% v/v' 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 278 atm 1 7 125 ? ? mM T5 ? pH ? ? K 2 298 atm 1 7 125 ? ? mM T25 ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 2 2 '2D 1H-1H COSY' 1 isotropic 4 2 2 '2D 1H-1H NOESY' 1 isotropic 5 2 2 '2D 1H-1H TOCSY' 1 isotropic # _pdbx_nmr_refine.entry_id 7NBL _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 5 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 processing TopSpin ? 'Bruker Biospin' 3 'chemical shift assignment' NMRFAM-SPARKY ? 'Goddard & Kneller' 4 'structure calculation' Amber 18 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 5 refinement Amber 18 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 6 'data analysis' MOLMOL ? 'Koradi, Billeter and Wuthrich' 7 'data analysis' 3DNA ? 'Lu & Olson' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DA OP3 O N N 73 DA P P N N 74 DA OP1 O N N 75 DA OP2 O N N 76 DA "O5'" O N N 77 DA "C5'" C N N 78 DA "C4'" C N R 79 DA "O4'" O N N 80 DA "C3'" C N S 81 DA "O3'" O N N 82 DA "C2'" C N N 83 DA "C1'" C N R 84 DA N9 N Y N 85 DA C8 C Y N 86 DA N7 N Y N 87 DA C5 C Y N 88 DA C6 C Y N 89 DA N6 N N N 90 DA N1 N Y N 91 DA C2 C Y N 92 DA N3 N Y N 93 DA C4 C Y N 94 DA HOP3 H N N 95 DA HOP2 H N N 96 DA "H5'" H N N 97 DA "H5''" H N N 98 DA "H4'" H N N 99 DA "H3'" H N N 100 DA "HO3'" H N N 101 DA "H2'" H N N 102 DA "H2''" H N N 103 DA "H1'" H N N 104 DA H8 H N N 105 DA H61 H N N 106 DA H62 H N N 107 DA H2 H N N 108 DC OP3 O N N 109 DC P P N N 110 DC OP1 O N N 111 DC OP2 O N N 112 DC "O5'" O N N 113 DC "C5'" C N N 114 DC "C4'" C N R 115 DC "O4'" O N N 116 DC "C3'" C N S 117 DC "O3'" O N N 118 DC "C2'" C N N 119 DC "C1'" C N R 120 DC N1 N N N 121 DC C2 C N N 122 DC O2 O N N 123 DC N3 N N N 124 DC C4 C N N 125 DC N4 N N N 126 DC C5 C N N 127 DC C6 C N N 128 DC HOP3 H N N 129 DC HOP2 H N N 130 DC "H5'" H N N 131 DC "H5''" H N N 132 DC "H4'" H N N 133 DC "H3'" H N N 134 DC "HO3'" H N N 135 DC "H2'" H N N 136 DC "H2''" H N N 137 DC "H1'" H N N 138 DC H41 H N N 139 DC H42 H N N 140 DC H5 H N N 141 DC H6 H N N 142 DG OP3 O N N 143 DG P P N N 144 DG OP1 O N N 145 DG OP2 O N N 146 DG "O5'" O N N 147 DG "C5'" C N N 148 DG "C4'" C N R 149 DG "O4'" O N N 150 DG "C3'" C N S 151 DG "O3'" O N N 152 DG "C2'" C N N 153 DG "C1'" C N R 154 DG N9 N Y N 155 DG C8 C Y N 156 DG N7 N Y N 157 DG C5 C Y N 158 DG C6 C N N 159 DG O6 O N N 160 DG N1 N N N 161 DG C2 C N N 162 DG N2 N N N 163 DG N3 N N N 164 DG C4 C Y N 165 DG HOP3 H N N 166 DG HOP2 H N N 167 DG "H5'" H N N 168 DG "H5''" H N N 169 DG "H4'" H N N 170 DG "H3'" H N N 171 DG "HO3'" H N N 172 DG "H2'" H N N 173 DG "H2''" H N N 174 DG "H1'" H N N 175 DG H8 H N N 176 DG H1 H N N 177 DG H21 H N N 178 DG H22 H N N 179 DT OP3 O N N 180 DT P P N N 181 DT OP1 O N N 182 DT OP2 O N N 183 DT "O5'" O N N 184 DT "C5'" C N N 185 DT "C4'" C N R 186 DT "O4'" O N N 187 DT "C3'" C N S 188 DT "O3'" O N N 189 DT "C2'" C N N 190 DT "C1'" C N R 191 DT N1 N N N 192 DT C2 C N N 193 DT O2 O N N 194 DT N3 N N N 195 DT C4 C N N 196 DT O4 O N N 197 DT C5 C N N 198 DT C7 C N N 199 DT C6 C N N 200 DT HOP3 H N N 201 DT HOP2 H N N 202 DT "H5'" H N N 203 DT "H5''" H N N 204 DT "H4'" H N N 205 DT "H3'" H N N 206 DT "HO3'" H N N 207 DT "H2'" H N N 208 DT "H2''" H N N 209 DT "H1'" H N N 210 DT H3 H N N 211 DT H71 H N N 212 DT H72 H N N 213 DT H73 H N N 214 DT H6 H N N 215 G OP3 O N N 216 G P P N N 217 G OP1 O N N 218 G OP2 O N N 219 G "O5'" O N N 220 G "C5'" C N N 221 G "C4'" C N R 222 G "O4'" O N N 223 G "C3'" C N S 224 G "O3'" O N N 225 G "C2'" C N R 226 G "O2'" O N N 227 G "C1'" C N R 228 G N9 N Y N 229 G C8 C Y N 230 G N7 N Y N 231 G C5 C Y N 232 G C6 C N N 233 G O6 O N N 234 G N1 N N N 235 G C2 C N N 236 G N2 N N N 237 G N3 N N N 238 G C4 C Y N 239 G HOP3 H N N 240 G HOP2 H N N 241 G "H5'" H N N 242 G "H5''" H N N 243 G "H4'" H N N 244 G "H3'" H N N 245 G "HO3'" H N N 246 G "H2'" H N N 247 G "HO2'" H N N 248 G "H1'" H N N 249 G H8 H N N 250 G H1 H N N 251 G H21 H N N 252 G H22 H N N 253 U OP3 O N N 254 U P P N N 255 U OP1 O N N 256 U OP2 O N N 257 U "O5'" O N N 258 U "C5'" C N N 259 U "C4'" C N R 260 U "O4'" O N N 261 U "C3'" C N S 262 U "O3'" O N N 263 U "C2'" C N R 264 U "O2'" O N N 265 U "C1'" C N R 266 U N1 N N N 267 U C2 C N N 268 U O2 O N N 269 U N3 N N N 270 U C4 C N N 271 U O4 O N N 272 U C5 C N N 273 U C6 C N N 274 U HOP3 H N N 275 U HOP2 H N N 276 U "H5'" H N N 277 U "H5''" H N N 278 U "H4'" H N N 279 U "H3'" H N N 280 U "HO3'" H N N 281 U "H2'" H N N 282 U "HO2'" H N N 283 U "H1'" H N N 284 U H3 H N N 285 U H5 H N N 286 U H6 H N N 287 U7B P P N N 288 U7B "C5'" C N N 289 U7B "O5'" O N N 290 U7B "C4'" C N R 291 U7B "O4'" O N N 292 U7B "C3'" C N R 293 U7B "O3'" O N N 294 U7B "C2'" C N N 295 U7B "C1'" C N R 296 U7B N1 N N N 297 U7B C2 C N N 298 U7B O2 O N N 299 U7B N3 N N N 300 U7B C4 C N N 301 U7B N4 N N N 302 U7B C5 C N N 303 U7B C6 C N N 304 U7B OP1 O N N 305 U7B OP2 O N N 306 U7B F1 F N N 307 U7B F2 F N N 308 U7B "H5''" H N N 309 U7B "H5'" H N N 310 U7B "H4'" H N N 311 U7B "H3'" H N N 312 U7B H1 H N N 313 U7B "H1'" H N N 314 U7B H42 H N N 315 U7B H41 H N N 316 U7B H5 H N N 317 U7B H6 H N N 318 U7B H3 H N N 319 U7B OP3 O N N 320 U7B H2 H N N 321 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DA OP3 P sing N N 76 DA OP3 HOP3 sing N N 77 DA P OP1 doub N N 78 DA P OP2 sing N N 79 DA P "O5'" sing N N 80 DA OP2 HOP2 sing N N 81 DA "O5'" "C5'" sing N N 82 DA "C5'" "C4'" sing N N 83 DA "C5'" "H5'" sing N N 84 DA "C5'" "H5''" sing N N 85 DA "C4'" "O4'" sing N N 86 DA "C4'" "C3'" sing N N 87 DA "C4'" "H4'" sing N N 88 DA "O4'" "C1'" sing N N 89 DA "C3'" "O3'" sing N N 90 DA "C3'" "C2'" sing N N 91 DA "C3'" "H3'" sing N N 92 DA "O3'" "HO3'" sing N N 93 DA "C2'" "C1'" sing N N 94 DA "C2'" "H2'" sing N N 95 DA "C2'" "H2''" sing N N 96 DA "C1'" N9 sing N N 97 DA "C1'" "H1'" sing N N 98 DA N9 C8 sing Y N 99 DA N9 C4 sing Y N 100 DA C8 N7 doub Y N 101 DA C8 H8 sing N N 102 DA N7 C5 sing Y N 103 DA C5 C6 sing Y N 104 DA C5 C4 doub Y N 105 DA C6 N6 sing N N 106 DA C6 N1 doub Y N 107 DA N6 H61 sing N N 108 DA N6 H62 sing N N 109 DA N1 C2 sing Y N 110 DA C2 N3 doub Y N 111 DA C2 H2 sing N N 112 DA N3 C4 sing Y N 113 DC OP3 P sing N N 114 DC OP3 HOP3 sing N N 115 DC P OP1 doub N N 116 DC P OP2 sing N N 117 DC P "O5'" sing N N 118 DC OP2 HOP2 sing N N 119 DC "O5'" "C5'" sing N N 120 DC "C5'" "C4'" sing N N 121 DC "C5'" "H5'" sing N N 122 DC "C5'" "H5''" sing N N 123 DC "C4'" "O4'" sing N N 124 DC "C4'" "C3'" sing N N 125 DC "C4'" "H4'" sing N N 126 DC "O4'" "C1'" sing N N 127 DC "C3'" "O3'" sing N N 128 DC "C3'" "C2'" sing N N 129 DC "C3'" "H3'" sing N N 130 DC "O3'" "HO3'" sing N N 131 DC "C2'" "C1'" sing N N 132 DC "C2'" "H2'" sing N N 133 DC "C2'" "H2''" sing N N 134 DC "C1'" N1 sing N N 135 DC "C1'" "H1'" sing N N 136 DC N1 C2 sing N N 137 DC N1 C6 sing N N 138 DC C2 O2 doub N N 139 DC C2 N3 sing N N 140 DC N3 C4 doub N N 141 DC C4 N4 sing N N 142 DC C4 C5 sing N N 143 DC N4 H41 sing N N 144 DC N4 H42 sing N N 145 DC C5 C6 doub N N 146 DC C5 H5 sing N N 147 DC C6 H6 sing N N 148 DG OP3 P sing N N 149 DG OP3 HOP3 sing N N 150 DG P OP1 doub N N 151 DG P OP2 sing N N 152 DG P "O5'" sing N N 153 DG OP2 HOP2 sing N N 154 DG "O5'" "C5'" sing N N 155 DG "C5'" "C4'" sing N N 156 DG "C5'" "H5'" sing N N 157 DG "C5'" "H5''" sing N N 158 DG "C4'" "O4'" sing N N 159 DG "C4'" "C3'" sing N N 160 DG "C4'" "H4'" sing N N 161 DG "O4'" "C1'" sing N N 162 DG "C3'" "O3'" sing N N 163 DG "C3'" "C2'" sing N N 164 DG "C3'" "H3'" sing N N 165 DG "O3'" "HO3'" sing N N 166 DG "C2'" "C1'" sing N N 167 DG "C2'" "H2'" sing N N 168 DG "C2'" "H2''" sing N N 169 DG "C1'" N9 sing N N 170 DG "C1'" "H1'" sing N N 171 DG N9 C8 sing Y N 172 DG N9 C4 sing Y N 173 DG C8 N7 doub Y N 174 DG C8 H8 sing N N 175 DG N7 C5 sing Y N 176 DG C5 C6 sing N N 177 DG C5 C4 doub Y N 178 DG C6 O6 doub N N 179 DG C6 N1 sing N N 180 DG N1 C2 sing N N 181 DG N1 H1 sing N N 182 DG C2 N2 sing N N 183 DG C2 N3 doub N N 184 DG N2 H21 sing N N 185 DG N2 H22 sing N N 186 DG N3 C4 sing N N 187 DT OP3 P sing N N 188 DT OP3 HOP3 sing N N 189 DT P OP1 doub N N 190 DT P OP2 sing N N 191 DT P "O5'" sing N N 192 DT OP2 HOP2 sing N N 193 DT "O5'" "C5'" sing N N 194 DT "C5'" "C4'" sing N N 195 DT "C5'" "H5'" sing N N 196 DT "C5'" "H5''" sing N N 197 DT "C4'" "O4'" sing N N 198 DT "C4'" "C3'" sing N N 199 DT "C4'" "H4'" sing N N 200 DT "O4'" "C1'" sing N N 201 DT "C3'" "O3'" sing N N 202 DT "C3'" "C2'" sing N N 203 DT "C3'" "H3'" sing N N 204 DT "O3'" "HO3'" sing N N 205 DT "C2'" "C1'" sing N N 206 DT "C2'" "H2'" sing N N 207 DT "C2'" "H2''" sing N N 208 DT "C1'" N1 sing N N 209 DT "C1'" "H1'" sing N N 210 DT N1 C2 sing N N 211 DT N1 C6 sing N N 212 DT C2 O2 doub N N 213 DT C2 N3 sing N N 214 DT N3 C4 sing N N 215 DT N3 H3 sing N N 216 DT C4 O4 doub N N 217 DT C4 C5 sing N N 218 DT C5 C7 sing N N 219 DT C5 C6 doub N N 220 DT C7 H71 sing N N 221 DT C7 H72 sing N N 222 DT C7 H73 sing N N 223 DT C6 H6 sing N N 224 G OP3 P sing N N 225 G OP3 HOP3 sing N N 226 G P OP1 doub N N 227 G P OP2 sing N N 228 G P "O5'" sing N N 229 G OP2 HOP2 sing N N 230 G "O5'" "C5'" sing N N 231 G "C5'" "C4'" sing N N 232 G "C5'" "H5'" sing N N 233 G "C5'" "H5''" sing N N 234 G "C4'" "O4'" sing N N 235 G "C4'" "C3'" sing N N 236 G "C4'" "H4'" sing N N 237 G "O4'" "C1'" sing N N 238 G "C3'" "O3'" sing N N 239 G "C3'" "C2'" sing N N 240 G "C3'" "H3'" sing N N 241 G "O3'" "HO3'" sing N N 242 G "C2'" "O2'" sing N N 243 G "C2'" "C1'" sing N N 244 G "C2'" "H2'" sing N N 245 G "O2'" "HO2'" sing N N 246 G "C1'" N9 sing N N 247 G "C1'" "H1'" sing N N 248 G N9 C8 sing Y N 249 G N9 C4 sing Y N 250 G C8 N7 doub Y N 251 G C8 H8 sing N N 252 G N7 C5 sing Y N 253 G C5 C6 sing N N 254 G C5 C4 doub Y N 255 G C6 O6 doub N N 256 G C6 N1 sing N N 257 G N1 C2 sing N N 258 G N1 H1 sing N N 259 G C2 N2 sing N N 260 G C2 N3 doub N N 261 G N2 H21 sing N N 262 G N2 H22 sing N N 263 G N3 C4 sing N N 264 U OP3 P sing N N 265 U OP3 HOP3 sing N N 266 U P OP1 doub N N 267 U P OP2 sing N N 268 U P "O5'" sing N N 269 U OP2 HOP2 sing N N 270 U "O5'" "C5'" sing N N 271 U "C5'" "C4'" sing N N 272 U "C5'" "H5'" sing N N 273 U "C5'" "H5''" sing N N 274 U "C4'" "O4'" sing N N 275 U "C4'" "C3'" sing N N 276 U "C4'" "H4'" sing N N 277 U "O4'" "C1'" sing N N 278 U "C3'" "O3'" sing N N 279 U "C3'" "C2'" sing N N 280 U "C3'" "H3'" sing N N 281 U "O3'" "HO3'" sing N N 282 U "C2'" "O2'" sing N N 283 U "C2'" "C1'" sing N N 284 U "C2'" "H2'" sing N N 285 U "O2'" "HO2'" sing N N 286 U "C1'" N1 sing N N 287 U "C1'" "H1'" sing N N 288 U N1 C2 sing N N 289 U N1 C6 sing N N 290 U C2 O2 doub N N 291 U C2 N3 sing N N 292 U N3 C4 sing N N 293 U N3 H3 sing N N 294 U C4 O4 doub N N 295 U C4 C5 sing N N 296 U C5 C6 doub N N 297 U C5 H5 sing N N 298 U C6 H6 sing N N 299 U7B OP1 P doub N N 300 U7B P "O5'" sing N N 301 U7B P OP2 sing N N 302 U7B "C5'" "C4'" sing N N 303 U7B "C5'" "O5'" sing N N 304 U7B "O4'" "C4'" sing N N 305 U7B "O4'" "C1'" sing N N 306 U7B "C4'" "C3'" sing N N 307 U7B "C1'" N1 sing N N 308 U7B "C1'" "C2'" sing N N 309 U7B N1 C6 sing N N 310 U7B N1 C2 sing N N 311 U7B O2 C2 doub N N 312 U7B C6 C5 doub N N 313 U7B C2 N3 sing N N 314 U7B C5 C4 sing N N 315 U7B N3 C4 doub N N 316 U7B "C3'" "O3'" sing N N 317 U7B "C3'" "C2'" sing N N 318 U7B C4 N4 sing N N 319 U7B "C2'" F1 sing N N 320 U7B "C2'" F2 sing N N 321 U7B "C5'" "H5''" sing N N 322 U7B "C5'" "H5'" sing N N 323 U7B "C4'" "H4'" sing N N 324 U7B "C3'" "H3'" sing N N 325 U7B "O3'" H1 sing N N 326 U7B "C1'" "H1'" sing N N 327 U7B N4 H42 sing N N 328 U7B N4 H41 sing N N 329 U7B C5 H5 sing N N 330 U7B C6 H6 sing N N 331 U7B OP2 H3 sing N N 332 U7B P OP3 sing N N 333 U7B OP3 H2 sing N N 334 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7NBL 'double helix' 7NBL 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B A 7 1_555 -0.335 -0.043 0.036 -4.632 -2.754 8.199 1 A_DT2:A15_B A 2 ? B 15 ? 20 1 1 A DA 3 1_555 B U 6 1_555 0.115 -0.119 0.512 1.676 -3.995 2.909 2 A_DA3:U14_B A 3 ? B 14 ? 20 1 1 A U7B 4 1_555 B G 5 1_555 0.443 -0.173 0.488 -23.233 -0.084 -2.196 3 A_U7B4:G13_B A 4 ? B 13 ? 19 1 1 A DA 5 1_555 B U 4 1_555 0.335 0.004 0.309 0.391 -3.448 -7.925 4 A_DA5:U12_B A 5 ? B 12 ? 20 1 1 A DC 6 1_555 B G 3 1_555 0.526 -0.223 0.342 9.290 -3.809 0.457 5 A_DC6:G11_B A 6 ? B 11 ? 19 1 1 A DG 7 1_555 B C 2 1_555 -0.110 -0.158 0.192 6.607 -14.887 -0.052 6 A_DG7:C10_B A 7 ? B 10 ? 19 1 1 A DG 8 1_555 B C 1 1_555 -0.615 -0.261 0.143 -9.869 -16.940 -1.611 7 A_DG8:C9_B A 8 ? B 9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B A 7 1_555 A DA 3 1_555 B U 6 1_555 -0.849 -1.500 3.000 -2.819 3.239 31.653 -3.259 1.081 2.899 5.904 5.139 31.935 1 AA_DT2DA3:U14A15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A DA 3 1_555 B U 6 1_555 A U7B 4 1_555 B G 5 1_555 -0.835 -1.574 4.296 -1.632 16.261 30.875 -5.624 1.094 3.141 28.202 2.831 34.840 2 AA_DA3U7B4:G13U14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A U7B 4 1_555 B G 5 1_555 A DA 5 1_555 B U 4 1_555 -0.343 -0.963 2.658 1.624 1.833 30.961 -2.081 0.891 2.577 3.426 -3.036 31.055 3 AA_U7B4DA5:U12G13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A DA 5 1_555 B U 4 1_555 A DC 6 1_555 B G 3 1_555 0.984 -0.949 3.142 -2.398 -0.643 31.277 -1.641 -2.250 3.078 -1.191 4.439 31.372 4 AA_DA5DC6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A DC 6 1_555 B G 3 1_555 A DG 7 1_555 B C 2 1_555 -0.858 -0.711 3.188 -1.504 3.564 36.533 -1.600 1.162 3.139 5.665 2.391 36.730 5 AA_DC6DG7:C10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A DG 7 1_555 B C 2 1_555 A DG 8 1_555 B C 1 1_555 -0.247 -1.547 3.519 -1.938 5.975 33.503 -3.627 0.102 3.212 10.252 3.326 34.070 6 AA_DG7DG8:C9C10_BB A 7 ? B 10 ? A 8 ? B 9 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Spanish Ministry of Science, Innovation, and Universities' Spain PRE2018-083173 1 'Spanish Ministry of Science, Innovation, and Universities' Spain BFU2017-89707-P 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id U7B _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id U7B _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 7NBL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C F H N O P # loop_