HEADER DNA BINDING PROTEIN 27-JAN-21 7NBN TITLE ALLOSTERY THROUGH DNA DRIVES PHENOTYPE SWITCHING COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADDAB PROMOTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ADDAB PROMOTER; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 4 ORGANISM_TAXID: 1423; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 8 ORGANISM_TAXID: 1423 KEYWDS TRANSCRIPTION-FACTOR, DNA-BINDING, A-TRACT, ALLOSTERY, DNA BINDING KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR G.ROSENBLUM,N.ELAD,H.ROZENBERG,F.WIGGERS,J.JUNGWIRTH,H.HOFMANN REVDAT 2 02-JUN-21 7NBN 1 JRNL REVDAT 1 07-APR-21 7NBN 0 JRNL AUTH G.ROSENBLUM,N.ELAD,H.ROZENBERG,F.WIGGERS,J.JUNGWIRTH, JRNL AUTH 2 H.HOFMANN JRNL TITL ALLOSTERY THROUGH DNA DRIVES PHENOTYPE SWITCHING. JRNL REF NAT COMMUN V. 12 2967 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34016970 JRNL DOI 10.1038/S41467-021-23148-2 REMARK 2 REMARK 2 RESOLUTION. 7.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, CRYOSPARC, COOT, COOT, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, PHENIX, REMARK 3 PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.000 REMARK 3 NUMBER OF PARTICLES : 100695 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7NBN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113458. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMK TRANSCRIPTION FACTOR BOUND REMARK 245 TO ITS COMG PROMOTER DNA. REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.24 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5570.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : 58207 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-11022 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12260 RELATED DB: EMDB REMARK 900 ALLOSTERY THROUGH DNA DRIVES PHENOTYPE SWITCHING DBREF 7NBN A 1 78 PDB 7NBN 7NBN 1 78 DBREF 7NBN B 1 78 PDB 7NBN 7NBN 1 78 SEQRES 1 A 78 DG DG DA DG DA DG DA DT DG DT DG DC DG SEQRES 2 A 78 DG DA DG DA DT DA DA DT DC DA DG DC DT SEQRES 3 A 78 DT DT DT DT DA DT DA DT DG DT DG DA DA SEQRES 4 A 78 DA DA DG DG DC DC DG DT DT DT DT DT DA SEQRES 5 A 78 DC DC DA DA DT DA DG DA DT DC DA DG DA SEQRES 6 A 78 DT DT DG DG DT DC DA DT DT DT DT DC DG SEQRES 1 B 78 DC DG DA DA DA DA DT DG DA DC DC DA DA SEQRES 2 B 78 DT DC DT DG DA DT DC DT DA DT DT DG DG SEQRES 3 B 78 DT DA DA DA DA DA DC DG DG DC DC DT DT SEQRES 4 B 78 DT DT DC DA DC DA DT DA DT DA DA DA DA SEQRES 5 B 78 DA DG DC DT DG DA DT DT DA DT DC DT DC SEQRES 6 B 78 DC DG DC DA DC DA DT DC DT DC DT DC DC CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000