data_7Q7Y # _entry.id 7Q7Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.384 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7Q7Y pdb_00007q7y 10.2210/pdb7q7y/pdb WWPDB D_1292118316 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-03-23 2 'Structure model' 1 1 2022-03-30 3 'Structure model' 1 2 2022-05-11 4 'Structure model' 1 3 2024-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.name' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7Q7Y _pdbx_database_status.recvd_initial_deposition_date 2021-11-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 7Q7X _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email claudia.hoebartner@uni-wuerzburg.de _pdbx_contact_author.name_first Hoebartner _pdbx_contact_author.name_last Claudia _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4548-2299 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mieczkowski, M.' 1 ? 'Hoebartner, C.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 18 _citation.language ? _citation.page_first 547 _citation.page_last 555 _citation.title 'Structure and mechanism of the methyltransferase ribozyme MTR1.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-022-00976-x _citation.pdbx_database_id_PubMed 35301481 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Scheitl, C.P.M.' 1 ? primary 'Mieczkowski, M.' 2 ? primary 'Schindelin, H.' 3 ? primary 'Hobartner, C.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA 1' 4514.798 1 ? ? ? ? 2 polymer syn 'RNA 2' 7641.636 1 ? ? ? ? 3 polymer syn 'RNA 3' 7755.703 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 5 non-polymer syn GUANINE 151.126 1 ? ? ? ? 6 water nat water 18.015 12 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'CCACUG(9SY)GAGUUUC' CCACUGAGAGUUUC A ? 2 polyribonucleotide no no GGAAGCUCUGACCGACCCCCAGCC GGAAGCUCUGACCGACCCCCAGCC B ? 3 polyribonucleotide no no GCUGGGACAACUAGACAUACAGUG GCUGGGACAACUAGACAUACAGUG C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 GUANINE GUN 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 A n 1 4 C n 1 5 U n 1 6 G n 1 7 9SY n 1 8 G n 1 9 A n 1 10 G n 1 11 U n 1 12 U n 1 13 U n 1 14 C n 2 1 G n 2 2 G n 2 3 A n 2 4 A n 2 5 G n 2 6 C n 2 7 U n 2 8 C n 2 9 U n 2 10 G n 2 11 A n 2 12 C n 2 13 C n 2 14 G n 2 15 A n 2 16 C n 2 17 C n 2 18 C n 2 19 C n 2 20 C n 2 21 A n 2 22 G n 2 23 C n 2 24 C n 3 1 G n 3 2 C n 3 3 U n 3 4 G n 3 5 G n 3 6 G n 3 7 A n 3 8 C n 3 9 A n 3 10 A n 3 11 C n 3 12 U n 3 13 A n 3 14 G n 3 15 A n 3 16 C n 3 17 A n 3 18 U n 3 19 A n 3 20 C n 3 21 A n 3 22 G n 3 23 U n 3 24 G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 14 'synthetic construct' ? 32630 ? 2 1 sample 1 24 'synthetic construct' ? 32630 ? 3 1 sample 1 24 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 9SY 'RNA linking' n '[(2R,3S,4R,5R)-5-[6-azanyl-1-(phenylmethyl)purin-1-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate' '1-benzyl-adenosine derivative' 'C17 H21 N5 O7 P 1' 438.352 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GUN non-polymer . GUANINE ? 'C5 H5 N5 O' 151.126 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 C 2 2 2 C C A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 9SY 7 7 7 9SY BNA A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 U 12 12 12 U U A . n A 1 13 U 13 13 13 U U A . n A 1 14 C 14 14 14 C C A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 A 3 3 3 A A B . n B 2 4 A 4 4 4 A A B . n B 2 5 G 5 5 5 G G B . n B 2 6 C 6 6 6 C C B . n B 2 7 U 7 7 7 U U B . n B 2 8 C 8 8 8 C C B . n B 2 9 U 9 9 9 U U B . n B 2 10 G 10 10 10 G G B . n B 2 11 A 11 11 11 A A B . n B 2 12 C 12 12 12 C C B . n B 2 13 C 13 13 13 C C B . n B 2 14 G 14 14 14 G G B . n B 2 15 A 15 15 15 A A B . n B 2 16 C 16 16 16 C C B . n B 2 17 C 17 17 17 C C B . n B 2 18 C 18 18 18 C C B . n B 2 19 C 19 19 19 C C B . n B 2 20 C 20 20 20 C C B . n B 2 21 A 21 21 21 A A B . n B 2 22 G 22 22 22 G G B . n B 2 23 C 23 23 23 C C B . n B 2 24 C 24 24 24 C C B . n C 3 1 G 1 25 25 G G C . n C 3 2 C 2 26 26 C C C . n C 3 3 U 3 27 27 U U C . n C 3 4 G 4 28 28 G G C . n C 3 5 G 5 29 29 G G C . n C 3 6 G 6 30 30 G G C . n C 3 7 A 7 31 31 A A C . n C 3 8 C 8 32 32 C C C . n C 3 9 A 9 33 33 A A C . n C 3 10 A 10 34 34 A A C . n C 3 11 C 11 35 35 C C C . n C 3 12 U 12 36 36 U U C . n C 3 13 A 13 37 37 A A C . n C 3 14 G 14 38 38 G G C . n C 3 15 A 15 39 39 A A C . n C 3 16 C 16 40 40 C C C . n C 3 17 A 17 41 41 A A C . n C 3 18 U 18 42 42 U U C . n C 3 19 A 19 43 43 A A C . n C 3 20 C 20 44 44 C C C . n C 3 21 A 21 45 45 A A C . n C 3 22 G 22 46 46 G G C . n C 3 23 U 23 47 47 U U C . n C 3 24 G 24 48 48 G G C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG 1 101 3 MG MG B . E 4 MG 1 102 2 MG MO6 B . F 4 MG 1 101 1 MG MG C . G 4 MG 1 102 2 MG MG C . H 5 GUN 1 103 1 GUN GUN C . I 4 MG 1 104 1 MG MO6 C . J 6 HOH 1 201 2 HOH MO6 B . J 6 HOH 2 202 1 HOH MO6 B . J 6 HOH 3 203 2 HOH MO6 B . J 6 HOH 4 204 2 HOH MO6 B . J 6 HOH 5 205 2 HOH MO6 B . J 6 HOH 6 206 1 HOH MO6 B . J 6 HOH 7 207 2 HOH MO6 B . K 6 HOH 1 201 1 HOH MO6 C . K 6 HOH 2 202 1 HOH MO6 C . K 6 HOH 3 203 1 HOH MO6 C . K 6 HOH 4 204 1 HOH MO6 C . K 6 HOH 5 205 2 HOH MO6 C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.19.1_4122: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7Q7Y _cell.details ? _cell.formula_units_Z ? _cell.length_a 71.265 _cell.length_a_esd ? _cell.length_b 71.265 _cell.length_b_esd ? _cell.length_c 83.090 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q7Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7Q7Y _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '36-42% MPD, 50mM MES pH 6.4-6.7, 100mM NaCl, 100mM LiCl, 10mM MgCl2' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-02-27 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator M _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9716 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9716 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7Q7Y _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.90 _reflns.d_resolution_low 43.09 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5134 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.0 _reflns.pdbx_Rmerge_I_obs 0.14 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.08 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.20 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 799 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.561 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7Q7Y _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.90 _refine.ls_d_res_low 29.76 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5091 _refine.ls_number_reflns_R_free 230 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.82 _refine.ls_percent_reflns_R_free 4.52 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1996 _refine.ls_R_factor_R_free 0.2446 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1974 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7Q7X _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.26 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.38 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1318 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 1344 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 29.76 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.002 ? 1496 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.425 ? 2334 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 12.564 ? 733 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.024 ? 306 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 64 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.90 3.65 . . 114 2363 100.00 . . . 0.2745 . 0.2966 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.65 29.76 . . 116 2498 100.00 . . . 0.2356 . 0.1705 . . . . . . . . . . . # _struct.entry_id 7Q7Y _struct.title 'Crystal structure of the methyltransferase-ribozyme 1 (1-benzyl-adenosine derivative)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7Q7Y _struct_keywords.text 'MTR1, methyltransferase ribozyme, ribozyme, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 4 ? J N N 6 ? K N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7Q7Y 7Q7Y ? 1 ? 1 2 PDB 7Q7Y 7Q7Y ? 2 ? 1 3 PDB 7Q7Y 7Q7Y ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7Q7Y A 1 ? 14 ? 7Q7Y 1 ? 14 ? 1 14 2 2 7Q7Y B 1 ? 24 ? 7Q7Y 1 ? 24 ? 1 24 3 3 7Q7Y C 1 ? 24 ? 7Q7Y 25 ? 48 ? 25 48 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5300 ? 1 MORE -40 ? 1 'SSA (A^2)' 10120 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 6 "O3'" ? ? ? 1_555 A 9SY 7 P ? ? A G 6 A 9SY 7 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? A 9SY 7 "O3'" ? ? ? 1_555 A G 8 P ? ? A 9SY 7 A G 8 1_555 ? ? ? ? ? ? ? 1.605 ? ? metalc1 metalc ? ? B C 12 "O2'" ? ? ? 1_555 D MG . MG ? ? B C 12 B MG 101 1_555 ? ? ? ? ? ? ? 2.246 ? ? metalc2 metalc ? ? B C 12 O2 ? ? ? 1_555 D MG . MG ? ? B C 12 B MG 101 1_555 ? ? ? ? ? ? ? 2.599 ? ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 102 B HOH 201 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 102 B HOH 203 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 102 B HOH 204 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 102 B HOH 205 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 102 B HOH 207 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 102 C HOH 205 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc9 metalc ? ? J HOH . O ? ? ? 1_555 I MG . MG ? ? B HOH 202 C MG 104 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc10 metalc ? ? J HOH . O ? ? ? 1_555 I MG . MG ? ? B HOH 206 C MG 104 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc11 metalc ? ? C C 8 O2 ? ? ? 1_555 F MG . MG ? ? C C 32 C MG 101 1_555 ? ? ? ? ? ? ? 2.450 ? ? metalc12 metalc ? ? C U 23 O4 ? ? ? 1_555 G MG . MG ? ? C U 47 C MG 102 1_555 ? ? ? ? ? ? ? 2.352 ? ? metalc13 metalc ? ? C G 24 O6 ? ? ? 1_555 G MG . MG ? ? C G 48 C MG 102 1_555 ? ? ? ? ? ? ? 2.192 ? ? metalc14 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 104 C HOH 201 1_555 ? ? ? ? ? ? ? 2.177 ? ? metalc15 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 104 C HOH 202 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc16 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 104 C HOH 203 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc17 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 104 C HOH 204 1_555 ? ? ? ? ? ? ? 2.179 ? ? hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 C G 24 N1 ? ? A C 2 C G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 C G 24 O6 ? ? A C 2 C G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 C G 24 N2 ? ? A C 2 C G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 C U 23 N3 ? ? A A 3 C U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 C U 23 O4 ? ? A A 3 C U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 N3 ? ? ? 1_555 C G 22 N1 ? ? A C 4 C G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N4 ? ? ? 1_555 C G 22 O6 ? ? A C 4 C G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 O2 ? ? ? 1_555 C G 22 N2 ? ? A C 4 C G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 N3 ? ? ? 1_555 C A 21 N1 ? ? A U 5 C A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 O4 ? ? ? 1_555 C A 21 N6 ? ? A U 5 C A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 6 N1 ? ? ? 1_555 C C 20 N3 ? ? A G 6 C C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N2 ? ? ? 1_555 C C 20 O2 ? ? A G 6 C C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 O6 ? ? ? 1_555 C C 20 N4 ? ? A G 6 C C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 8 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 8 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 8 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 9 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 9 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 10 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 10 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 10 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 O4 ? ? ? 1_555 B G 5 N1 ? ? A U 11 B G 5 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog23 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 12 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 4 N6 ? ? A U 12 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 13 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 13 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 13 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 13 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 14 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 14 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 14 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B U 9 N3 ? ? ? 1_555 C A 10 N7 ? ? B U 9 C A 34 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog31 hydrog ? ? B U 9 O2 ? ? ? 1_555 C A 10 N6 ? ? B U 9 C A 34 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog32 hydrog ? ? B A 11 N6 ? ? ? 1_555 C A 19 N3 ? ? B A 11 C A 43 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog33 hydrog ? ? B C 13 N3 ? ? ? 1_555 C G 14 N1 ? ? B C 13 C G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B C 13 N4 ? ? ? 1_555 C G 14 O6 ? ? B C 13 C G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 13 O2 ? ? ? 1_555 C G 14 N2 ? ? B C 13 C G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 13 O2 ? ? ? 1_555 C A 17 N6 ? ? B C 13 C A 41 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog37 hydrog ? ? B G 14 N1 ? ? ? 1_555 C C 11 N3 ? ? B G 14 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 14 N2 ? ? ? 1_555 C C 11 O2 ? ? B G 14 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 14 O6 ? ? ? 1_555 C C 11 N4 ? ? B G 14 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B C 17 N4 ? ? ? 1_555 C A 7 N1 ? ? B C 17 C A 31 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog41 hydrog ? ? B C 18 N3 ? ? ? 1_555 C G 6 N1 ? ? B C 18 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B C 18 N4 ? ? ? 1_555 C G 6 O6 ? ? B C 18 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B C 18 O2 ? ? ? 1_555 C G 6 N2 ? ? B C 18 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B C 19 N3 ? ? ? 1_555 C G 5 N1 ? ? B C 19 C G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 19 N4 ? ? ? 1_555 C G 5 O6 ? ? B C 19 C G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B C 19 O2 ? ? ? 1_555 C G 5 N2 ? ? B C 19 C G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 20 N3 ? ? ? 1_555 C G 4 N1 ? ? B C 20 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B C 20 N4 ? ? ? 1_555 C G 4 O6 ? ? B C 20 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B C 20 O2 ? ? ? 1_555 C G 4 N2 ? ? B C 20 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B A 21 N1 ? ? ? 1_555 C U 3 N3 ? ? B A 21 C U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B A 21 N6 ? ? ? 1_555 C U 3 O4 ? ? B A 21 C U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 22 N1 ? ? ? 1_555 C C 2 N3 ? ? B G 22 C C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 22 N2 ? ? ? 1_555 C C 2 O2 ? ? B G 22 C C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B G 22 O6 ? ? ? 1_555 C C 2 N4 ? ? B G 22 C C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B C 23 N3 ? ? ? 1_555 C G 1 N1 ? ? B C 23 C G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 23 N4 ? ? ? 1_555 C G 1 O6 ? ? B C 23 C G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B C 23 O2 ? ? ? 1_555 C G 1 N2 ? ? B C 23 C G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O2'" ? B C 12 ? B C 12 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O2 ? B C 12 ? B C 12 ? 1_555 100.9 ? 2 O ? J HOH . ? B HOH 201 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? J HOH . ? B HOH 203 ? 1_555 90.0 ? 3 O ? J HOH . ? B HOH 201 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? J HOH . ? B HOH 204 ? 1_555 90.0 ? 4 O ? J HOH . ? B HOH 203 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? J HOH . ? B HOH 204 ? 1_555 89.9 ? 5 O ? J HOH . ? B HOH 201 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? J HOH . ? B HOH 205 ? 1_555 90.1 ? 6 O ? J HOH . ? B HOH 203 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? J HOH . ? B HOH 205 ? 1_555 179.7 ? 7 O ? J HOH . ? B HOH 204 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? J HOH . ? B HOH 205 ? 1_555 89.7 ? 8 O ? J HOH . ? B HOH 201 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? J HOH . ? B HOH 207 ? 1_555 179.8 ? 9 O ? J HOH . ? B HOH 203 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? J HOH . ? B HOH 207 ? 1_555 90.0 ? 10 O ? J HOH . ? B HOH 204 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? J HOH . ? B HOH 207 ? 1_555 90.2 ? 11 O ? J HOH . ? B HOH 205 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? J HOH . ? B HOH 207 ? 1_555 90.0 ? 12 O ? J HOH . ? B HOH 201 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? K HOH . ? C HOH 205 ? 1_555 89.8 ? 13 O ? J HOH . ? B HOH 203 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? K HOH . ? C HOH 205 ? 1_555 90.3 ? 14 O ? J HOH . ? B HOH 204 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? K HOH . ? C HOH 205 ? 1_555 179.7 ? 15 O ? J HOH . ? B HOH 205 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? K HOH . ? C HOH 205 ? 1_555 90.1 ? 16 O ? J HOH . ? B HOH 207 ? 1_555 MG ? E MG . ? B MG 102 ? 1_555 O ? K HOH . ? C HOH 205 ? 1_555 90.0 ? 17 O ? J HOH . ? B HOH 202 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? J HOH . ? B HOH 206 ? 1_555 90.3 ? 18 O ? J HOH . ? B HOH 202 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 201 ? 1_555 179.5 ? 19 O ? J HOH . ? B HOH 206 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 201 ? 1_555 89.3 ? 20 O ? J HOH . ? B HOH 202 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 202 ? 1_555 90.3 ? 21 O ? J HOH . ? B HOH 206 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 202 ? 1_555 90.0 ? 22 O ? K HOH . ? C HOH 201 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 202 ? 1_555 89.4 ? 23 O ? J HOH . ? B HOH 202 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 203 ? 1_555 89.8 ? 24 O ? J HOH . ? B HOH 206 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 203 ? 1_555 179.9 ? 25 O ? K HOH . ? C HOH 201 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 203 ? 1_555 90.6 ? 26 O ? K HOH . ? C HOH 202 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 203 ? 1_555 89.9 ? 27 O ? J HOH . ? B HOH 202 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 204 ? 1_555 90.1 ? 28 O ? J HOH . ? B HOH 206 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 204 ? 1_555 90.4 ? 29 O ? K HOH . ? C HOH 201 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 204 ? 1_555 90.2 ? 30 O ? K HOH . ? C HOH 202 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 204 ? 1_555 179.4 ? 31 O ? K HOH . ? C HOH 203 ? 1_555 MG ? I MG . ? C MG 104 ? 1_555 O ? K HOH . ? C HOH 204 ? 1_555 89.7 ? 32 O4 ? C U 23 ? C U 47 ? 1_555 MG ? G MG . ? C MG 102 ? 1_555 O6 ? C G 24 ? C G 48 ? 1_555 84.9 ? # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 45.1143 _pdbx_refine_tls.origin_y 13.0435 _pdbx_refine_tls.origin_z 42.1005 _pdbx_refine_tls.T[1][1] 0.5242 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.0143 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.0347 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.5163 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0153 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.6603 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 2.6906 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 3.0493 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -1.4179 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 7.0213 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -1.6810 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 2.7296 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.4220 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.1860 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.2097 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.0460 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.3949 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.0088 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.0746 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.3526 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.0361 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # _pdbx_entry_details.entry_id 7Q7Y _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 9SY C11 C Y N 1 9SY C12 C Y N 2 9SY C1 C N N 3 9SY "C1'" C N R 4 9SY C10 C Y N 5 9SY C2 C Y N 6 9SY "C2'" C N R 7 9SY C3 C Y N 8 9SY "C3'" C N S 9 9SY C4 C Y N 10 9SY "C4'" C N R 11 9SY C5 C Y N 12 9SY "C5'" C N N 13 9SY C6 C Y N 14 9SY C7 C Y N 15 9SY C8 C Y N 16 9SY C9 C Y N 17 9SY N1 N Y N 18 9SY N3 N Y N 19 9SY N6 N N N 20 9SY N7 N Y N 21 9SY N9 N Y N 22 9SY OP1 O N N 23 9SY "O2'" O N N 24 9SY OP2 O N N 25 9SY "O3'" O N N 26 9SY "O4'" O N N 27 9SY "O5'" O N N 28 9SY P P N N 29 9SY H1 H N N 30 9SY H5 H N N 31 9SY H3 H N N 32 9SY H4 H N N 33 9SY "H1'" H N N 34 9SY H6 H N N 35 9SY H2 H N N 36 9SY "H2'" H N N 37 9SY "H3'" H N N 38 9SY "H4'" H N N 39 9SY "H5'" H N N 40 9SY "H5''" H N N 41 9SY H13 H N N 42 9SY H8 H N N 43 9SY H15 H N N 44 9SY H61 H N N 45 9SY H62 H N N 46 9SY "HO2'" H N N 47 9SY HOP2 H N N 48 9SY "HO3'" H N N 49 9SY OP3 O N N 50 9SY HOP3 H N N 51 A OP3 O N N 52 A P P N N 53 A OP1 O N N 54 A OP2 O N N 55 A "O5'" O N N 56 A "C5'" C N N 57 A "C4'" C N R 58 A "O4'" O N N 59 A "C3'" C N S 60 A "O3'" O N N 61 A "C2'" C N R 62 A "O2'" O N N 63 A "C1'" C N R 64 A N9 N Y N 65 A C8 C Y N 66 A N7 N Y N 67 A C5 C Y N 68 A C6 C Y N 69 A N6 N N N 70 A N1 N Y N 71 A C2 C Y N 72 A N3 N Y N 73 A C4 C Y N 74 A HOP3 H N N 75 A HOP2 H N N 76 A "H5'" H N N 77 A "H5''" H N N 78 A "H4'" H N N 79 A "H3'" H N N 80 A "HO3'" H N N 81 A "H2'" H N N 82 A "HO2'" H N N 83 A "H1'" H N N 84 A H8 H N N 85 A H61 H N N 86 A H62 H N N 87 A H2 H N N 88 C OP3 O N N 89 C P P N N 90 C OP1 O N N 91 C OP2 O N N 92 C "O5'" O N N 93 C "C5'" C N N 94 C "C4'" C N R 95 C "O4'" O N N 96 C "C3'" C N S 97 C "O3'" O N N 98 C "C2'" C N R 99 C "O2'" O N N 100 C "C1'" C N R 101 C N1 N N N 102 C C2 C N N 103 C O2 O N N 104 C N3 N N N 105 C C4 C N N 106 C N4 N N N 107 C C5 C N N 108 C C6 C N N 109 C HOP3 H N N 110 C HOP2 H N N 111 C "H5'" H N N 112 C "H5''" H N N 113 C "H4'" H N N 114 C "H3'" H N N 115 C "HO3'" H N N 116 C "H2'" H N N 117 C "HO2'" H N N 118 C "H1'" H N N 119 C H41 H N N 120 C H42 H N N 121 C H5 H N N 122 C H6 H N N 123 G OP3 O N N 124 G P P N N 125 G OP1 O N N 126 G OP2 O N N 127 G "O5'" O N N 128 G "C5'" C N N 129 G "C4'" C N R 130 G "O4'" O N N 131 G "C3'" C N S 132 G "O3'" O N N 133 G "C2'" C N R 134 G "O2'" O N N 135 G "C1'" C N R 136 G N9 N Y N 137 G C8 C Y N 138 G N7 N Y N 139 G C5 C Y N 140 G C6 C N N 141 G O6 O N N 142 G N1 N N N 143 G C2 C N N 144 G N2 N N N 145 G N3 N N N 146 G C4 C Y N 147 G HOP3 H N N 148 G HOP2 H N N 149 G "H5'" H N N 150 G "H5''" H N N 151 G "H4'" H N N 152 G "H3'" H N N 153 G "HO3'" H N N 154 G "H2'" H N N 155 G "HO2'" H N N 156 G "H1'" H N N 157 G H8 H N N 158 G H1 H N N 159 G H21 H N N 160 G H22 H N N 161 GUN N9 N Y N 162 GUN C8 C Y N 163 GUN N7 N Y N 164 GUN C5 C Y N 165 GUN C6 C N N 166 GUN O6 O N N 167 GUN N1 N N N 168 GUN C2 C N N 169 GUN N2 N N N 170 GUN N3 N N N 171 GUN C4 C Y N 172 GUN HN9 H N N 173 GUN H8 H N N 174 GUN HN1 H N N 175 GUN HN21 H N N 176 GUN HN22 H N N 177 HOH O O N N 178 HOH H1 H N N 179 HOH H2 H N N 180 MG MG MG N N 181 U OP3 O N N 182 U P P N N 183 U OP1 O N N 184 U OP2 O N N 185 U "O5'" O N N 186 U "C5'" C N N 187 U "C4'" C N R 188 U "O4'" O N N 189 U "C3'" C N S 190 U "O3'" O N N 191 U "C2'" C N R 192 U "O2'" O N N 193 U "C1'" C N R 194 U N1 N N N 195 U C2 C N N 196 U O2 O N N 197 U N3 N N N 198 U C4 C N N 199 U O4 O N N 200 U C5 C N N 201 U C6 C N N 202 U HOP3 H N N 203 U HOP2 H N N 204 U "H5'" H N N 205 U "H5''" H N N 206 U "H4'" H N N 207 U "H3'" H N N 208 U "HO3'" H N N 209 U "H2'" H N N 210 U "HO2'" H N N 211 U "H1'" H N N 212 U H3 H N N 213 U H5 H N N 214 U H6 H N N 215 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9SY OP2 P sing N N 1 9SY N6 C6 sing N N 2 9SY N7 C8 doub Y N 3 9SY N7 C5 sing Y N 4 9SY P OP1 doub N N 5 9SY P "O5'" sing N N 6 9SY C8 N9 sing Y N 7 9SY C5 C6 doub Y N 8 9SY C5 C4 sing Y N 9 9SY C6 N1 sing Y N 10 9SY "O5'" "C5'" sing N N 11 9SY N9 C4 sing Y N 12 9SY N9 "C1'" sing N N 13 9SY C4 N3 doub Y N 14 9SY N1 C1 sing N N 15 9SY N1 C2 doub Y N 16 9SY C1 C3 sing N N 17 9SY "C5'" "C4'" sing N N 18 9SY "C2'" "O2'" sing N N 19 9SY "C2'" "C1'" sing N N 20 9SY "C2'" "C3'" sing N N 21 9SY "C1'" "O4'" sing N N 22 9SY "O4'" "C4'" sing N N 23 9SY N3 C2 sing Y N 24 9SY "C3'" "C4'" sing N N 25 9SY "C3'" "O3'" sing N N 26 9SY C3 C12 doub Y N 27 9SY C3 C7 sing Y N 28 9SY C12 C11 sing Y N 29 9SY C7 C9 doub Y N 30 9SY C11 C10 doub Y N 31 9SY C9 C10 sing Y N 32 9SY C11 H1 sing N N 33 9SY C12 H5 sing N N 34 9SY C1 H3 sing N N 35 9SY C1 H4 sing N N 36 9SY "C1'" "H1'" sing N N 37 9SY C10 H6 sing N N 38 9SY C2 H2 sing N N 39 9SY "C2'" "H2'" sing N N 40 9SY "C3'" "H3'" sing N N 41 9SY "C4'" "H4'" sing N N 42 9SY "C5'" "H5'" sing N N 43 9SY "C5'" "H5''" sing N N 44 9SY C7 H13 sing N N 45 9SY C8 H8 sing N N 46 9SY C9 H15 sing N N 47 9SY N6 H61 sing N N 48 9SY N6 H62 sing N N 49 9SY "O2'" "HO2'" sing N N 50 9SY OP2 HOP2 sing N N 51 9SY "O3'" "HO3'" sing N N 52 9SY P OP3 sing N N 53 9SY OP3 HOP3 sing N N 54 A OP3 P sing N N 55 A OP3 HOP3 sing N N 56 A P OP1 doub N N 57 A P OP2 sing N N 58 A P "O5'" sing N N 59 A OP2 HOP2 sing N N 60 A "O5'" "C5'" sing N N 61 A "C5'" "C4'" sing N N 62 A "C5'" "H5'" sing N N 63 A "C5'" "H5''" sing N N 64 A "C4'" "O4'" sing N N 65 A "C4'" "C3'" sing N N 66 A "C4'" "H4'" sing N N 67 A "O4'" "C1'" sing N N 68 A "C3'" "O3'" sing N N 69 A "C3'" "C2'" sing N N 70 A "C3'" "H3'" sing N N 71 A "O3'" "HO3'" sing N N 72 A "C2'" "O2'" sing N N 73 A "C2'" "C1'" sing N N 74 A "C2'" "H2'" sing N N 75 A "O2'" "HO2'" sing N N 76 A "C1'" N9 sing N N 77 A "C1'" "H1'" sing N N 78 A N9 C8 sing Y N 79 A N9 C4 sing Y N 80 A C8 N7 doub Y N 81 A C8 H8 sing N N 82 A N7 C5 sing Y N 83 A C5 C6 sing Y N 84 A C5 C4 doub Y N 85 A C6 N6 sing N N 86 A C6 N1 doub Y N 87 A N6 H61 sing N N 88 A N6 H62 sing N N 89 A N1 C2 sing Y N 90 A C2 N3 doub Y N 91 A C2 H2 sing N N 92 A N3 C4 sing Y N 93 C OP3 P sing N N 94 C OP3 HOP3 sing N N 95 C P OP1 doub N N 96 C P OP2 sing N N 97 C P "O5'" sing N N 98 C OP2 HOP2 sing N N 99 C "O5'" "C5'" sing N N 100 C "C5'" "C4'" sing N N 101 C "C5'" "H5'" sing N N 102 C "C5'" "H5''" sing N N 103 C "C4'" "O4'" sing N N 104 C "C4'" "C3'" sing N N 105 C "C4'" "H4'" sing N N 106 C "O4'" "C1'" sing N N 107 C "C3'" "O3'" sing N N 108 C "C3'" "C2'" sing N N 109 C "C3'" "H3'" sing N N 110 C "O3'" "HO3'" sing N N 111 C "C2'" "O2'" sing N N 112 C "C2'" "C1'" sing N N 113 C "C2'" "H2'" sing N N 114 C "O2'" "HO2'" sing N N 115 C "C1'" N1 sing N N 116 C "C1'" "H1'" sing N N 117 C N1 C2 sing N N 118 C N1 C6 sing N N 119 C C2 O2 doub N N 120 C C2 N3 sing N N 121 C N3 C4 doub N N 122 C C4 N4 sing N N 123 C C4 C5 sing N N 124 C N4 H41 sing N N 125 C N4 H42 sing N N 126 C C5 C6 doub N N 127 C C5 H5 sing N N 128 C C6 H6 sing N N 129 G OP3 P sing N N 130 G OP3 HOP3 sing N N 131 G P OP1 doub N N 132 G P OP2 sing N N 133 G P "O5'" sing N N 134 G OP2 HOP2 sing N N 135 G "O5'" "C5'" sing N N 136 G "C5'" "C4'" sing N N 137 G "C5'" "H5'" sing N N 138 G "C5'" "H5''" sing N N 139 G "C4'" "O4'" sing N N 140 G "C4'" "C3'" sing N N 141 G "C4'" "H4'" sing N N 142 G "O4'" "C1'" sing N N 143 G "C3'" "O3'" sing N N 144 G "C3'" "C2'" sing N N 145 G "C3'" "H3'" sing N N 146 G "O3'" "HO3'" sing N N 147 G "C2'" "O2'" sing N N 148 G "C2'" "C1'" sing N N 149 G "C2'" "H2'" sing N N 150 G "O2'" "HO2'" sing N N 151 G "C1'" N9 sing N N 152 G "C1'" "H1'" sing N N 153 G N9 C8 sing Y N 154 G N9 C4 sing Y N 155 G C8 N7 doub Y N 156 G C8 H8 sing N N 157 G N7 C5 sing Y N 158 G C5 C6 sing N N 159 G C5 C4 doub Y N 160 G C6 O6 doub N N 161 G C6 N1 sing N N 162 G N1 C2 sing N N 163 G N1 H1 sing N N 164 G C2 N2 sing N N 165 G C2 N3 doub N N 166 G N2 H21 sing N N 167 G N2 H22 sing N N 168 G N3 C4 sing N N 169 GUN N9 C8 sing Y N 170 GUN N9 C4 sing Y N 171 GUN N9 HN9 sing N N 172 GUN C8 N7 doub Y N 173 GUN C8 H8 sing N N 174 GUN N7 C5 sing Y N 175 GUN C5 C6 sing N N 176 GUN C5 C4 doub Y N 177 GUN C6 O6 doub N N 178 GUN C6 N1 sing N N 179 GUN N1 C2 sing N N 180 GUN N1 HN1 sing N N 181 GUN C2 N2 sing N N 182 GUN C2 N3 doub N N 183 GUN N2 HN21 sing N N 184 GUN N2 HN22 sing N N 185 GUN N3 C4 sing N N 186 HOH O H1 sing N N 187 HOH O H2 sing N N 188 U OP3 P sing N N 189 U OP3 HOP3 sing N N 190 U P OP1 doub N N 191 U P OP2 sing N N 192 U P "O5'" sing N N 193 U OP2 HOP2 sing N N 194 U "O5'" "C5'" sing N N 195 U "C5'" "C4'" sing N N 196 U "C5'" "H5'" sing N N 197 U "C5'" "H5''" sing N N 198 U "C4'" "O4'" sing N N 199 U "C4'" "C3'" sing N N 200 U "C4'" "H4'" sing N N 201 U "O4'" "C1'" sing N N 202 U "C3'" "O3'" sing N N 203 U "C3'" "C2'" sing N N 204 U "C3'" "H3'" sing N N 205 U "O3'" "HO3'" sing N N 206 U "C2'" "O2'" sing N N 207 U "C2'" "C1'" sing N N 208 U "C2'" "H2'" sing N N 209 U "O2'" "HO2'" sing N N 210 U "C1'" N1 sing N N 211 U "C1'" "H1'" sing N N 212 U N1 C2 sing N N 213 U N1 C6 sing N N 214 U C2 O2 doub N N 215 U C2 N3 sing N N 216 U N3 C4 sing N N 217 U N3 H3 sing N N 218 U C4 O4 doub N N 219 U C4 C5 sing N N 220 U C5 C6 doub N N 221 U C5 H5 sing N N 222 U C6 H6 sing N N 223 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7Q7Y 'double helix' 7Q7Y 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 C G 24 1_555 -0.257 -0.016 -0.106 6.023 -5.477 4.161 1 A_C2:G48_C A 2 ? C 48 ? 19 1 1 A A 3 1_555 C U 23 1_555 -0.157 -0.037 0.237 4.804 -11.927 5.839 2 A_A3:U47_C A 3 ? C 47 ? 20 1 1 A C 4 1_555 C G 22 1_555 0.503 -0.033 -0.010 7.676 -10.081 3.810 3 A_C4:G46_C A 4 ? C 46 ? 19 1 1 A U 5 1_555 C A 21 1_555 -0.136 0.095 0.011 0.142 -11.712 7.233 4 A_U5:A45_C A 5 ? C 45 ? 20 1 1 A G 6 1_555 C C 20 1_555 -0.448 -0.031 -0.114 -7.873 -18.939 2.568 5 A_G6:C44_C A 6 ? C 44 ? 19 1 1 B A 11 1_555 C A 19 1_555 -6.737 -0.887 -0.695 18.446 15.204 55.423 6 B_A11:A43_C B 11 ? C 43 ? ? 5 1 B C 13 1_555 C G 14 1_555 -0.061 -0.128 -0.295 -4.668 -3.347 -3.427 7 B_C13:G38_C B 13 ? C 38 ? 19 1 1 B G 14 1_555 C C 11 1_555 -0.040 -0.030 -0.357 -7.743 -6.903 2.317 8 B_G14:C35_C B 14 ? C 35 ? 19 1 1 B G 2 1_555 A C 14 1_555 0.952 -0.033 -0.536 -14.055 -16.635 -8.942 9 B_G2:C14_A B 2 ? A 14 ? 19 1 1 B A 3 1_555 A U 13 1_555 0.685 -0.078 -0.776 -10.296 -24.992 -2.588 10 B_A3:U13_A B 3 ? A 13 ? 20 1 1 B A 4 1_555 A U 12 1_555 0.079 -0.178 -0.016 3.347 2.658 -3.302 11 B_A4:U12_A B 4 ? A 12 ? 20 1 1 B G 5 1_555 A U 11 1_555 1.653 -0.253 -0.533 -4.622 -16.991 -8.525 12 B_G5:U11_A B 5 ? A 11 ? ? 1 1 B C 6 1_555 A G 10 1_555 0.610 0.042 -0.462 5.004 -14.748 3.516 13 B_C6:G10_A B 6 ? A 10 ? 19 1 1 B U 7 1_555 A A 9 1_555 0.097 0.091 -0.026 -1.920 -8.734 -1.190 14 B_U7:A9_A B 7 ? A 9 ? 20 1 1 B C 8 1_555 A G 8 1_555 0.781 -0.137 -0.110 1.584 -5.751 0.267 15 B_C8:G8_A B 8 ? A 8 ? 19 1 1 B U 9 1_555 C A 10 1_555 4.276 -2.223 -0.050 -2.858 -2.340 -100.588 16 B_U9:A34_C B 9 ? C 34 ? 24 4 1 B C 17 1_555 C A 7 1_555 -3.312 0.646 -1.285 43.395 -19.173 -9.853 17 B_C17:A31_C B 17 ? C 31 ? ? ? 1 B C 18 1_555 C G 6 1_555 0.439 0.003 -0.454 19.505 -16.770 7.242 18 B_C18:G30_C B 18 ? C 30 ? 19 1 1 B C 19 1_555 C G 5 1_555 0.418 -0.256 -0.510 6.199 -10.496 4.884 19 B_C19:G29_C B 19 ? C 29 ? 19 1 1 B C 20 1_555 C G 4 1_555 0.015 -0.183 0.063 0.195 -2.996 7.160 20 B_C20:G28_C B 20 ? C 28 ? 19 1 1 B A 21 1_555 C U 3 1_555 -0.034 -0.179 -0.094 -3.977 -18.041 8.175 21 B_A21:U27_C B 21 ? C 27 ? 20 1 1 B G 22 1_555 C C 2 1_555 -0.110 -0.048 -0.102 -6.847 -20.354 4.084 22 B_G22:C26_C B 22 ? C 26 ? 19 1 1 B C 23 1_555 C G 1 1_555 0.717 -0.375 0.136 -1.330 -13.091 -3.612 23 B_C23:G25_C B 23 ? C 25 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 C G 24 1_555 A A 3 1_555 C U 23 1_555 -0.259 -1.444 3.101 -3.803 15.018 31.065 -4.411 -0.068 2.208 26.104 6.611 34.629 1 AA_C2A3:U47G48_CC A 2 ? C 48 ? A 3 ? C 47 ? 1 A A 3 1_555 C U 23 1_555 A C 4 1_555 C G 22 1_555 -0.089 -1.158 3.133 1.792 7.891 34.401 -2.981 0.390 2.799 13.117 -2.979 35.312 2 AA_A3C4:G46U47_CC A 3 ? C 47 ? A 4 ? C 46 ? 1 A C 4 1_555 C G 22 1_555 A U 5 1_555 C A 21 1_555 0.166 -1.796 3.352 -0.007 7.950 28.162 -5.198 -0.330 2.752 15.941 0.015 29.241 3 AA_C4U5:A45G46_CC A 4 ? C 46 ? A 5 ? C 45 ? 1 A U 5 1_555 C A 21 1_555 A G 6 1_555 C C 20 1_555 -0.298 -1.733 3.428 2.370 9.914 30.446 -4.857 0.950 2.714 18.247 -4.363 32.069 4 AA_U5G6:C44A45_CC A 5 ? C 45 ? A 6 ? C 44 ? 1 A G 6 1_555 C C 20 1_555 B A 11 1_555 C A 19 1_555 -3.913 -4.288 3.347 12.298 21.990 64.776 -4.387 3.790 1.327 19.766 -11.054 69.003 5 AB_G6A11:A43C44_CC A 6 ? C 44 ? B 11 ? C 43 ? 1 B A 11 1_555 C A 19 1_555 B C 13 1_555 C G 14 1_555 1.599 -1.549 6.714 -9.061 10.631 121.958 -1.077 -1.077 6.550 6.069 5.173 122.429 6 BB_A11C13:G38A43_CC B 11 ? C 43 ? B 13 ? C 38 ? 1 B C 13 1_555 C G 14 1_555 B G 14 1_555 C C 11 1_555 -0.207 -1.917 3.447 1.664 10.196 23.753 -6.930 0.894 2.411 23.405 -3.819 25.873 7 BB_C13G14:C35G38_CC B 13 ? C 38 ? B 14 ? C 35 ? 1 B G 2 1_555 A C 14 1_555 B A 3 1_555 A U 13 1_555 -0.515 -1.053 3.143 0.553 14.834 28.649 -4.247 1.016 2.321 27.748 -1.034 32.195 8 BB_G2A3:U13C14_AA B 2 ? A 14 ? B 3 ? A 13 ? 1 B A 3 1_555 A U 13 1_555 B A 4 1_555 A U 12 1_555 -0.081 -0.964 2.944 -8.623 3.075 28.418 -2.443 -1.441 2.733 6.067 17.016 29.828 9 BB_A3A4:U12U13_AA B 3 ? A 13 ? B 4 ? A 12 ? 1 B A 4 1_555 A U 12 1_555 B G 5 1_555 A U 11 1_555 0.086 -1.408 3.571 6.823 18.623 39.540 -3.650 0.534 2.663 25.666 -9.403 44.057 10 BB_A4G5:U11U12_AA B 4 ? A 12 ? B 5 ? A 11 ? 1 B G 5 1_555 A U 11 1_555 B C 6 1_555 A G 10 1_555 0.294 -2.334 2.915 2.039 3.731 25.049 -6.213 -0.173 2.561 8.524 -4.659 25.402 11 BB_G5C6:G10U11_AA B 5 ? A 11 ? B 6 ? A 10 ? 1 B C 6 1_555 A G 10 1_555 B U 7 1_555 A A 9 1_555 -0.534 -1.725 3.346 -1.570 10.756 30.166 -4.952 0.701 2.616 19.874 2.901 32.022 12 BB_C6U7:A9G10_AA B 6 ? A 10 ? B 7 ? A 9 ? 1 B U 7 1_555 A A 9 1_555 B C 8 1_555 A G 8 1_555 0.049 -1.624 3.008 2.145 6.970 33.946 -3.654 0.205 2.631 11.769 -3.622 34.698 13 BB_U7C8:G8A9_AA B 7 ? A 9 ? B 8 ? A 8 ? 1 B C 8 1_555 A G 8 1_555 B U 9 1_555 C A 10 1_555 -3.372 -1.895 3.339 3.318 5.899 77.284 -1.678 2.785 3.087 4.715 -2.652 77.533 14 BB_C8U9:A34G8_CA B 8 ? A 8 ? B 9 ? C 34 ? 1 B C 17 1_555 C A 7 1_555 B C 18 1_555 C G 6 1_555 0.543 -1.347 4.145 -6.933 15.019 47.656 -2.881 -1.237 3.492 17.968 8.294 50.286 15 BB_C17C18:G30A31_CC B 17 ? C 31 ? B 18 ? C 30 ? 1 B C 18 1_555 C G 6 1_555 B C 19 1_555 C G 5 1_555 -0.015 -1.797 3.508 1.483 12.458 32.989 -4.780 0.241 2.672 21.015 -2.502 35.232 16 BB_C18C19:G29G30_CC B 18 ? C 30 ? B 19 ? C 29 ? 1 B C 19 1_555 C G 5 1_555 B C 20 1_555 C G 4 1_555 -0.566 -1.979 3.449 -5.146 9.160 25.735 -6.267 -0.024 2.663 19.559 10.987 27.764 17 BB_C19C20:G28G29_CC B 19 ? C 29 ? B 20 ? C 28 ? 1 B C 20 1_555 C G 4 1_555 B A 21 1_555 C U 3 1_555 0.190 -1.472 3.187 3.489 13.649 30.989 -4.462 0.172 2.356 24.049 -6.148 33.969 18 BB_C20A21:U27G28_CC B 20 ? C 28 ? B 21 ? C 27 ? 1 B A 21 1_555 C U 3 1_555 B G 22 1_555 C C 2 1_555 -0.224 -1.347 3.266 -0.201 10.910 31.177 -4.100 0.362 2.658 19.563 0.361 32.987 19 BB_A21G22:C26U27_CC B 21 ? C 27 ? B 22 ? C 26 ? 1 B G 22 1_555 C C 2 1_555 B C 23 1_555 C G 1 1_555 0.015 -1.554 3.179 -0.381 1.759 36.090 -2.743 -0.076 3.102 2.837 0.614 36.133 20 BB_G22C23:G25C26_CC B 22 ? C 26 ? B 23 ? C 25 ? # _pdbx_audit_support.funding_organization 'European Research Council (ERC)' _pdbx_audit_support.country 'European Union' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 9SY _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 9SY _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7Q7X _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 7Q7Y _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.014032 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014032 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012035 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_