data_7QAB # _entry.id 7QAB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7QAB pdb_00007qab 10.2210/pdb7qab/pdb WWPDB D_1292118852 ? ? BMRB 51091 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 51091 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7QAB _pdbx_database_status.recvd_initial_deposition_date 2021-11-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Morando, M.A.' 1 0000-0002-7349-3876 'Venturella, F.' 2 ? 'Pastore, A.' 3 0000-0002-3047-654X 'Alfano, C.' 4 0000-0003-0374-5852 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Commun Biol' ? ? 2399-3642 ? ? 5 ? 739 739 'Solution structure of recombinant Pvfp-5 beta reveals insights into mussel adhesion.' 2022 ? 10.1038/s42003-022-03699-w 35879391 ? ? ? ? ? ? ? ? ? US ? ? 1 'J Biol Chem' JBCHA3 0071 1083-351X ? ? 294 ? 12826 12835 'Recombinant mussel protein Pvfp-5b: A potential tissue bioadhesive.' 2019 ? 10.1074/jbc.RA119.009531 31292195 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Morando, M.A.' 1 ? primary 'Venturella, F.' 2 ? primary 'Sollazzo, M.' 3 ? primary 'Monaca, E.' 4 ? primary 'Sabbatella, R.' 5 ? primary 'Vetri, V.' 6 ? primary 'Passantino, R.' 7 ? primary 'Pastore, A.' 8 ? primary 'Alfano, C.' 9 ? 1 'Santonocito, R.' 10 0000-0002-4489-2034 1 'Venturella, F.' 11 ? 1 'Dal Piaz, F.' 12 ? 1 'Morando, M.A.' 13 0000-0002-7349-3876 1 'Provenzano, A.' 14 ? 1 'Rao, E.' 15 ? 1 'Costa, M.A.' 16 0000-0003-3377-6123 1 'Bulone, D.' 17 0000-0002-5841-9133 1 'San Biagio, P.L.' 18 0000-0002-4622-7361 1 'Giacomazza, D.' 19 0000-0002-6667-0205 1 'Sicorello, A.' 20 ? 1 'Alfano, C.' 21 0000-0003-0374-5852 1 'Passantino, R.' 22 0000-0001-6598-2664 1 'Pastore, A.' 23 0000-0002-3047-654X # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description PVFP-5 _entity.formula_weight 9514.961 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GVYYPNPCSPYPCRNGGTCKKRGLYSYKCYCRKGYTGKNCQYNACFPNPCLNGGTCGYVYGYPYYKCSCPYGYYGKQCQL KKY ; _entity_poly.pdbx_seq_one_letter_code_can ;GVYYPNPCSPYPCRNGGTCKKRGLYSYKCYCRKGYTGKNCQYNACFPNPCLNGGTCGYVYGYPYYKCSCPYGYYGKQCQL KKY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 VAL n 1 3 TYR n 1 4 TYR n 1 5 PRO n 1 6 ASN n 1 7 PRO n 1 8 CYS n 1 9 SER n 1 10 PRO n 1 11 TYR n 1 12 PRO n 1 13 CYS n 1 14 ARG n 1 15 ASN n 1 16 GLY n 1 17 GLY n 1 18 THR n 1 19 CYS n 1 20 LYS n 1 21 LYS n 1 22 ARG n 1 23 GLY n 1 24 LEU n 1 25 TYR n 1 26 SER n 1 27 TYR n 1 28 LYS n 1 29 CYS n 1 30 TYR n 1 31 CYS n 1 32 ARG n 1 33 LYS n 1 34 GLY n 1 35 TYR n 1 36 THR n 1 37 GLY n 1 38 LYS n 1 39 ASN n 1 40 CYS n 1 41 GLN n 1 42 TYR n 1 43 ASN n 1 44 ALA n 1 45 CYS n 1 46 PHE n 1 47 PRO n 1 48 ASN n 1 49 PRO n 1 50 CYS n 1 51 LEU n 1 52 ASN n 1 53 GLY n 1 54 GLY n 1 55 THR n 1 56 CYS n 1 57 GLY n 1 58 TYR n 1 59 VAL n 1 60 TYR n 1 61 GLY n 1 62 TYR n 1 63 PRO n 1 64 TYR n 1 65 TYR n 1 66 LYS n 1 67 CYS n 1 68 SER n 1 69 CYS n 1 70 PRO n 1 71 TYR n 1 72 GLY n 1 73 TYR n 1 74 TYR n 1 75 GLY n 1 76 LYS n 1 77 GLN n 1 78 CYS n 1 79 GLN n 1 80 LEU n 1 81 LYS n 1 82 LYS n 1 83 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 83 _entity_src_gen.gene_src_common_name 'Asian green mussel, Mytilus viridis' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Perna viridis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 73031 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code U5Y6P4_PERVI _struct_ref.pdbx_db_accession U5Y6P4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VYYPNPCSPYPCRNGGTCKKRGLYSYKCYCRKGYTGKNCQYNACFPNPCLNGGTCGYVYGYPYYKCSCPYGYYGKQCQLK KY ; _struct_ref.pdbx_align_begin 18 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7QAB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 83 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession U5Y6P4 _struct_ref_seq.db_align_beg 18 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 99 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 83 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 7QAB _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code U5Y6P4 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 2 '2D 1H-15N HSQC' 1 isotropic 2 1 2 '2D 1H-13C HSQC' 1 isotropic 3 1 2 '2D HBCBCGCDHD' 1 isotropic 4 1 2 '2D HBCBCGCDCEHE' 1 isotropic 5 1 1 '3D HNCO' 1 isotropic 6 1 1 '3D HNCA' 1 isotropic 8 1 1 '3D HN(CO)CA' 1 isotropic 9 1 2 '3D HN(COCA)CB' 1 isotropic 10 1 2 '3D HNCACB' 1 isotropic 11 1 2 '3D HBHA(CO)NH' 1 isotropic 12 1 2 '3D HBHANH' 1 isotropic 13 1 2 '3D 1H-13C NOESY aliphatic' 1 isotropic 14 1 2 '3D 1H-13C NOESY aromatic' 1 isotropic 15 1 2 '3D 1H-15N NOESY' 1 isotropic 16 1 2 '3D HCCH-TOCSY aliphatic' 1 isotropic 17 1 1 '3D HCCH-TOCSY aromatic' 2 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm 1 4.5 NA ? ? 'Not defined' 'condition 1' ? pH ? ? K 2 298 atm 1 4.5 NA ? ? 'Not defined' 'condition 1' ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '300 uM [U-100% 13C; U-100% 15N] Pvfp-5b, 20 mM sodium acetate pH 4.5, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N13C_Pvfp5b_1 solution ? 2 '900 uM [U-100% 13C; U-100% 15N] pvfp5b, 20 mM sodium acetate pH 4.5, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N13C_Pvfp5b_2 solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE NEO' ? Bruker 800 'Ri.MED Foundation' 2 'AVANCE III HD' ? Bruker 700 'MRC Biomedical NMR Centre' # _pdbx_nmr_refine.entry_id 7QAB _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 7QAB _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7QAB _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria medoid # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 2 'structure calculation' ARIA ? ;Linge, O'Donoghue and Nilges ; 3 'chemical shift assignment' 'CcpNmr Analysis' ? CCPN 4 'peak picking' 'CcpNmr Analysis' ? CCPN # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7QAB _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7QAB _struct.title 'NMR Solution Structure of mussel adhesive protein Pvfp-5b' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7QAB _struct_keywords.text 'adhesion proteins, bioadhesives, mussel foot proteins, coacervation, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 19 SG ? ? A CYS 8 A CYS 19 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 29 SG ? ? A CYS 13 A CYS 29 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf3 disulf ? ? A CYS 31 SG ? ? ? 1_555 A CYS 40 SG ? ? A CYS 31 A CYS 40 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf4 disulf ? ? A CYS 45 SG ? ? ? 1_555 A CYS 56 SG ? ? A CYS 45 A CYS 56 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf5 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 67 SG ? ? A CYS 50 A CYS 67 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf6 disulf ? ? A CYS 69 SG ? ? ? 1_555 A CYS 78 SG ? ? A CYS 69 A CYS 78 1_555 ? ? ? ? ? ? ? 2.029 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 18 ? ARG A 22 ? THR A 18 ARG A 22 AA1 2 SER A 26 ? TYR A 30 ? SER A 26 TYR A 30 AA2 1 THR A 55 ? GLY A 57 ? THR A 55 GLY A 57 AA2 2 LYS A 66 ? SER A 68 ? LYS A 66 SER A 68 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 18 ? N THR A 18 O TYR A 30 ? O TYR A 30 AA2 1 2 N GLY A 57 ? N GLY A 57 O LYS A 66 ? O LYS A 66 # _atom_sites.entry_id 7QAB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 CYS 78 78 78 CYS CYS A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 TYR 83 83 83 TYR TYR A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email calfano@fondazionerimed.com _pdbx_contact_author.name_first Caterina _pdbx_contact_author.name_last Alfano _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0374-5852 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-08-03 2 'Structure model' 1 1 2022-08-10 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 Pvfp-5b 300 ? uM '[U-100% 13C; U-100% 15N]' 1 'sodium acetate pH 4.5' 20 ? mM 'natural abundance' 2 pvfp5b 900 ? uM '[U-100% 13C; U-100% 15N]' 2 'sodium acetate pH 4.5' 20 ? mM 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 25 ? ? -144.52 -45.87 2 1 TYR A 35 ? ? -114.46 -79.59 3 1 CYS A 45 ? ? -86.31 48.55 4 1 LEU A 51 ? ? -94.17 -63.37 5 1 PRO A 63 ? ? -68.02 60.10 6 2 TYR A 11 ? ? -50.29 109.01 7 2 TYR A 25 ? ? -144.12 -43.89 8 2 SER A 26 ? ? -160.21 -168.45 9 2 TYR A 35 ? ? -104.47 -88.76 10 2 CYS A 40 ? ? 35.36 49.68 11 2 CYS A 45 ? ? -84.57 49.32 12 2 LEU A 51 ? ? -127.48 -73.67 13 2 PRO A 63 ? ? -64.76 72.18 14 3 TYR A 25 ? ? -143.22 -44.01 15 3 SER A 26 ? ? -173.31 -168.21 16 3 CYS A 40 ? ? 38.03 54.67 17 3 CYS A 45 ? ? -85.57 48.31 18 3 LEU A 51 ? ? -102.55 -72.79 19 3 PRO A 63 ? ? -66.21 66.22 20 4 TYR A 25 ? ? -144.20 -46.10 21 4 SER A 26 ? ? -168.88 -169.63 22 4 TYR A 35 ? ? -132.27 -80.33 23 4 CYS A 45 ? ? -88.26 47.96 24 4 PRO A 63 ? ? -69.15 64.89 25 5 TYR A 25 ? ? -144.02 -46.25 26 5 TYR A 35 ? ? -88.86 -88.96 27 5 CYS A 40 ? ? 34.75 50.35 28 5 CYS A 45 ? ? -85.20 49.21 29 5 PRO A 63 ? ? -69.50 68.49 30 6 TYR A 25 ? ? -143.77 -43.86 31 6 SER A 26 ? ? -179.97 -170.57 32 6 CYS A 45 ? ? -84.43 42.10 33 6 LEU A 51 ? ? -89.38 -74.52 34 6 PRO A 63 ? ? -65.52 65.79 35 7 PRO A 7 ? ? -72.61 36.37 36 7 PRO A 12 ? ? -73.87 27.14 37 7 TYR A 25 ? ? -143.65 -43.41 38 7 TYR A 35 ? ? -126.74 -78.38 39 7 CYS A 40 ? ? 39.50 33.17 40 7 CYS A 45 ? ? -89.31 48.48 41 7 LEU A 51 ? ? -126.12 -72.79 42 7 PRO A 63 ? ? -67.27 63.05 43 8 TYR A 11 ? ? -42.69 106.14 44 8 TYR A 25 ? ? -144.23 -43.75 45 8 TYR A 35 ? ? -101.76 -91.03 46 8 CYS A 40 ? ? 39.08 36.85 47 8 CYS A 45 ? ? -82.26 49.40 48 8 LEU A 51 ? ? -79.33 -73.24 49 8 PRO A 63 ? ? -60.72 69.29 50 9 TYR A 25 ? ? -144.64 -42.18 51 9 TYR A 35 ? ? -131.75 -70.79 52 9 CYS A 45 ? ? -87.42 46.59 53 9 VAL A 59 ? ? -174.11 148.76 54 9 PRO A 63 ? ? -69.87 66.03 55 9 CYS A 78 ? ? 70.08 48.57 56 10 VAL A 2 ? ? 68.79 125.82 57 10 TYR A 25 ? ? -144.33 -32.72 58 10 SER A 26 ? ? -166.64 -167.36 59 10 TYR A 35 ? ? -92.45 -70.25 60 10 CYS A 45 ? ? -87.91 47.83 61 10 LEU A 51 ? ? -95.92 -69.77 62 10 VAL A 59 ? ? -170.03 146.76 63 10 PRO A 63 ? ? -64.96 63.16 64 11 PRO A 12 ? ? -76.09 22.33 65 11 TYR A 25 ? ? -143.76 -44.31 66 11 TYR A 35 ? ? -117.75 -75.91 67 11 CYS A 45 ? ? -82.23 45.62 68 11 LEU A 51 ? ? -97.74 -68.63 69 11 PRO A 63 ? ? -63.27 75.71 70 12 VAL A 2 ? ? -141.68 43.34 71 12 TYR A 25 ? ? -144.26 -42.27 72 12 TYR A 35 ? ? -126.43 -73.73 73 12 CYS A 45 ? ? -88.84 47.20 74 12 PRO A 63 ? ? -68.14 62.08 75 13 LEU A 24 ? ? -95.67 -64.19 76 13 TYR A 25 ? ? -144.43 -44.28 77 13 CYS A 45 ? ? -96.11 48.56 78 13 LEU A 51 ? ? -87.19 -73.69 79 13 PRO A 63 ? ? -65.56 63.49 80 13 TYR A 74 ? ? -170.04 125.89 81 14 TYR A 25 ? ? -144.40 -44.40 82 14 SER A 26 ? ? -161.03 -169.33 83 14 TYR A 35 ? ? -120.77 -60.65 84 14 CYS A 40 ? ? 48.97 28.65 85 14 CYS A 45 ? ? -82.12 42.59 86 14 LEU A 51 ? ? -90.27 -73.54 87 14 PRO A 63 ? ? -60.48 71.93 88 15 LEU A 24 ? ? -96.77 -67.44 89 15 TYR A 25 ? ? -146.52 -23.95 90 15 CYS A 45 ? ? -83.22 39.82 91 15 LEU A 51 ? ? -77.91 -76.51 92 15 PRO A 63 ? ? -66.55 73.31 93 16 PRO A 7 ? ? -52.69 108.29 94 16 LEU A 24 ? ? -101.84 -64.48 95 16 TYR A 25 ? ? -144.81 -28.33 96 16 CYS A 31 ? ? -95.78 -156.81 97 16 TYR A 35 ? ? -126.97 -68.77 98 16 CYS A 40 ? ? 35.98 65.50 99 16 CYS A 45 ? ? -89.22 46.72 100 16 LEU A 51 ? ? -90.23 -73.32 101 16 PRO A 63 ? ? -66.48 68.29 102 17 PRO A 7 ? ? -64.40 90.58 103 17 TYR A 11 ? ? -45.60 105.52 104 17 TYR A 25 ? ? -142.77 -43.55 105 17 CYS A 45 ? ? -93.79 44.79 106 17 LEU A 51 ? ? -113.63 -70.20 107 17 PRO A 63 ? ? -61.74 71.78 108 18 TYR A 11 ? ? -55.84 107.03 109 18 TYR A 25 ? ? -144.04 -37.47 110 18 TYR A 35 ? ? -121.58 -78.87 111 18 CYS A 40 ? ? 35.50 51.02 112 18 PRO A 63 ? ? -64.66 64.63 113 19 PRO A 5 ? ? -62.37 96.29 114 19 PRO A 7 ? ? -65.74 92.20 115 19 TYR A 25 ? ? -144.15 -45.10 116 19 TYR A 35 ? ? -136.81 -73.26 117 19 CYS A 45 ? ? -80.75 49.66 118 19 PRO A 63 ? ? -68.75 60.29 119 20 PRO A 7 ? ? -77.53 41.54 120 20 PRO A 12 ? ? -58.63 9.89 121 20 LEU A 24 ? ? -101.54 -65.13 122 20 TYR A 25 ? ? -146.44 -34.04 123 20 TYR A 35 ? ? -135.34 -75.75 124 20 CYS A 45 ? ? -86.59 36.99 125 20 LEU A 51 ? ? -111.26 -73.65 126 20 VAL A 59 ? ? -171.23 139.35 127 20 PRO A 63 ? ? -65.28 54.04 128 20 TYR A 74 ? ? -171.86 124.90 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Other government' ? 'CUP G77B17000110001' 1 'Other government' ? 'CUP G76G17000130007' 2 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR relaxation study' _pdbx_struct_assembly_auth_evidence.details ? #