data_7R84 # _entry.id 7R84 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7R84 pdb_00007r84 10.2210/pdb7r84/pdb WWPDB D_1000257790 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-11-10 2 'Structure model' 1 1 2022-05-25 3 'Structure model' 1 2 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7R84 _pdbx_database_status.recvd_initial_deposition_date 2021-06-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Miao, Y.' 1 ? 'Jude, K.M.' 2 ? 'Garcia, K.C.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 184 _citation.language ? _citation.page_first 5869 _citation.page_last 5885.e25 _citation.title 'RTN4/NoGo-receptor binding to BAI adhesion-GPCRs regulates neuronal development.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2021.10.016 _citation.pdbx_database_id_PubMed 34758294 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, J.' 1 ? primary 'Miao, Y.' 2 ? primary 'Wicklein, R.' 3 ? primary 'Sun, Z.' 4 ? primary 'Wang, J.' 5 ? primary 'Jude, K.M.' 6 ? primary 'Fernandes, R.A.' 7 ? primary 'Merrill, S.A.' 8 ? primary 'Wernig, M.' 9 ? primary 'Garcia, K.C.' 10 ? primary 'Sudhof, T.C.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Vasculostatin-120 6080.832 4 ? ? ? ? 2 branched man 'beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose' 326.297 4 ? ? ? ? 3 non-polymer syn alpha-D-mannopyranose 180.156 8 ? ? ? ? 4 water nat water 18.015 179 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Vstat120 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code HGAWDEWSPWSLCSSTCGRGFRDRTRTCRPPQFGGNPCEGPEKQTKFCNIALCP _entity_poly.pdbx_seq_one_letter_code_can HGAWDEWSPWSLCSSTCGRGFRDRTRTCRPPQFGGNPCEGPEKQTKFCNIALCP _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 alpha-D-mannopyranose MAN 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 GLY n 1 3 ALA n 1 4 TRP n 1 5 ASP n 1 6 GLU n 1 7 TRP n 1 8 SER n 1 9 PRO n 1 10 TRP n 1 11 SER n 1 12 LEU n 1 13 CYS n 1 14 SER n 1 15 SER n 1 16 THR n 1 17 CYS n 1 18 GLY n 1 19 ARG n 1 20 GLY n 1 21 PHE n 1 22 ARG n 1 23 ASP n 1 24 ARG n 1 25 THR n 1 26 ARG n 1 27 THR n 1 28 CYS n 1 29 ARG n 1 30 PRO n 1 31 PRO n 1 32 GLN n 1 33 PHE n 1 34 GLY n 1 35 GLY n 1 36 ASN n 1 37 PRO n 1 38 CYS n 1 39 GLU n 1 40 GLY n 1 41 PRO n 1 42 GLU n 1 43 LYS n 1 44 GLN n 1 45 THR n 1 46 LYS n 1 47 PHE n 1 48 CYS n 1 49 ASN n 1 50 ILE n 1 51 ALA n 1 52 LEU n 1 53 CYS n 1 54 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 54 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Adgrb1, Bai1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name Human _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpb1-3LFucpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a1221m-1a_1-5][a2122h-1b_1-5]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][L-1-deoxy-Fucp]{[(3+1)][b-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 FUC _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 1 ? ? ? A . n A 1 2 GLY 2 2 ? ? ? A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 TRP 4 4 4 TRP TRP A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 TRP 10 10 10 TRP TRP A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 CYS 48 48 48 CYS CYS A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 CYS 53 53 53 CYS CYS A . n A 1 54 PRO 54 54 54 PRO PRO A . n B 1 1 HIS 1 1 ? ? ? B . n B 1 2 GLY 2 2 ? ? ? B . n B 1 3 ALA 3 3 ? ? ? B . n B 1 4 TRP 4 4 4 TRP TRP B . n B 1 5 ASP 5 5 5 ASP ASP B . n B 1 6 GLU 6 6 6 GLU GLU B . n B 1 7 TRP 7 7 7 TRP TRP B . n B 1 8 SER 8 8 8 SER SER B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 TRP 10 10 10 TRP TRP B . n B 1 11 SER 11 11 11 SER SER B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 CYS 13 13 13 CYS CYS B . n B 1 14 SER 14 14 14 SER SER B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 THR 16 16 16 THR THR B . n B 1 17 CYS 17 17 17 CYS CYS B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 ARG 19 19 19 ARG ARG B . n B 1 20 GLY 20 20 20 GLY GLY B . n B 1 21 PHE 21 21 21 PHE PHE B . n B 1 22 ARG 22 22 22 ARG ARG B . n B 1 23 ASP 23 23 23 ASP ASP B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 THR 25 25 25 THR THR B . n B 1 26 ARG 26 26 26 ARG ARG B . n B 1 27 THR 27 27 27 THR THR B . n B 1 28 CYS 28 28 28 CYS CYS B . n B 1 29 ARG 29 29 29 ARG ARG B . n B 1 30 PRO 30 30 30 PRO PRO B . n B 1 31 PRO 31 31 31 PRO PRO B . n B 1 32 GLN 32 32 32 GLN GLN B . n B 1 33 PHE 33 33 ? ? ? B . n B 1 34 GLY 34 34 ? ? ? B . n B 1 35 GLY 35 35 ? ? ? B . n B 1 36 ASN 36 36 ? ? ? B . n B 1 37 PRO 37 37 ? ? ? B . n B 1 38 CYS 38 38 ? ? ? B . n B 1 39 GLU 39 39 39 GLU GLU B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 PRO 41 41 41 PRO PRO B . n B 1 42 GLU 42 42 42 GLU GLU B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 GLN 44 44 44 GLN GLN B . n B 1 45 THR 45 45 45 THR THR B . n B 1 46 LYS 46 46 46 LYS LYS B . n B 1 47 PHE 47 47 47 PHE PHE B . n B 1 48 CYS 48 48 48 CYS CYS B . n B 1 49 ASN 49 49 49 ASN ASN B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 ALA 51 51 51 ALA ALA B . n B 1 52 LEU 52 52 52 LEU LEU B . n B 1 53 CYS 53 53 53 CYS CYS B . n B 1 54 PRO 54 54 54 PRO PRO B . n C 1 1 HIS 1 1 ? ? ? C . n C 1 2 GLY 2 2 ? ? ? C . n C 1 3 ALA 3 3 3 ALA ALA C . n C 1 4 TRP 4 4 4 TRP TRP C . n C 1 5 ASP 5 5 5 ASP ASP C . n C 1 6 GLU 6 6 6 GLU GLU C . n C 1 7 TRP 7 7 7 TRP TRP C . n C 1 8 SER 8 8 8 SER SER C . n C 1 9 PRO 9 9 9 PRO PRO C . n C 1 10 TRP 10 10 10 TRP TRP C . n C 1 11 SER 11 11 11 SER SER C . n C 1 12 LEU 12 12 12 LEU LEU C . n C 1 13 CYS 13 13 13 CYS CYS C . n C 1 14 SER 14 14 14 SER SER C . n C 1 15 SER 15 15 15 SER SER C . n C 1 16 THR 16 16 16 THR THR C . n C 1 17 CYS 17 17 17 CYS CYS C . n C 1 18 GLY 18 18 18 GLY GLY C . n C 1 19 ARG 19 19 19 ARG ARG C . n C 1 20 GLY 20 20 20 GLY GLY C . n C 1 21 PHE 21 21 21 PHE PHE C . n C 1 22 ARG 22 22 22 ARG ARG C . n C 1 23 ASP 23 23 23 ASP ASP C . n C 1 24 ARG 24 24 24 ARG ARG C . n C 1 25 THR 25 25 25 THR THR C . n C 1 26 ARG 26 26 26 ARG ARG C . n C 1 27 THR 27 27 27 THR THR C . n C 1 28 CYS 28 28 28 CYS CYS C . n C 1 29 ARG 29 29 29 ARG ARG C . n C 1 30 PRO 30 30 30 PRO PRO C . n C 1 31 PRO 31 31 31 PRO PRO C . n C 1 32 GLN 32 32 32 GLN GLN C . n C 1 33 PHE 33 33 33 PHE PHE C . n C 1 34 GLY 34 34 34 GLY GLY C . n C 1 35 GLY 35 35 35 GLY GLY C . n C 1 36 ASN 36 36 36 ASN ASN C . n C 1 37 PRO 37 37 37 PRO PRO C . n C 1 38 CYS 38 38 38 CYS CYS C . n C 1 39 GLU 39 39 39 GLU GLU C . n C 1 40 GLY 40 40 40 GLY GLY C . n C 1 41 PRO 41 41 41 PRO PRO C . n C 1 42 GLU 42 42 42 GLU GLU C . n C 1 43 LYS 43 43 43 LYS LYS C . n C 1 44 GLN 44 44 44 GLN GLN C . n C 1 45 THR 45 45 45 THR THR C . n C 1 46 LYS 46 46 46 LYS LYS C . n C 1 47 PHE 47 47 47 PHE PHE C . n C 1 48 CYS 48 48 48 CYS CYS C . n C 1 49 ASN 49 49 49 ASN ASN C . n C 1 50 ILE 50 50 50 ILE ILE C . n C 1 51 ALA 51 51 51 ALA ALA C . n C 1 52 LEU 52 52 52 LEU LEU C . n C 1 53 CYS 53 53 53 CYS CYS C . n C 1 54 PRO 54 54 54 PRO PRO C . n D 1 1 HIS 1 1 ? ? ? D . n D 1 2 GLY 2 2 ? ? ? D . n D 1 3 ALA 3 3 3 ALA ALA D . n D 1 4 TRP 4 4 4 TRP TRP D . n D 1 5 ASP 5 5 5 ASP ASP D . n D 1 6 GLU 6 6 6 GLU GLU D . n D 1 7 TRP 7 7 7 TRP TRP D . n D 1 8 SER 8 8 8 SER SER D . n D 1 9 PRO 9 9 9 PRO PRO D . n D 1 10 TRP 10 10 10 TRP TRP D . n D 1 11 SER 11 11 11 SER SER D . n D 1 12 LEU 12 12 12 LEU LEU D . n D 1 13 CYS 13 13 13 CYS CYS D . n D 1 14 SER 14 14 14 SER SER D . n D 1 15 SER 15 15 15 SER SER D . n D 1 16 THR 16 16 16 THR THR D . n D 1 17 CYS 17 17 17 CYS CYS D . n D 1 18 GLY 18 18 18 GLY GLY D . n D 1 19 ARG 19 19 19 ARG ARG D . n D 1 20 GLY 20 20 20 GLY GLY D . n D 1 21 PHE 21 21 21 PHE PHE D . n D 1 22 ARG 22 22 22 ARG ARG D . n D 1 23 ASP 23 23 23 ASP ASP D . n D 1 24 ARG 24 24 24 ARG ARG D . n D 1 25 THR 25 25 25 THR THR D . n D 1 26 ARG 26 26 26 ARG ARG D . n D 1 27 THR 27 27 27 THR THR D . n D 1 28 CYS 28 28 28 CYS CYS D . n D 1 29 ARG 29 29 29 ARG ARG D . n D 1 30 PRO 30 30 30 PRO PRO D . n D 1 31 PRO 31 31 31 PRO PRO D . n D 1 32 GLN 32 32 32 GLN GLN D . n D 1 33 PHE 33 33 ? ? ? D . n D 1 34 GLY 34 34 ? ? ? D . n D 1 35 GLY 35 35 ? ? ? D . n D 1 36 ASN 36 36 ? ? ? D . n D 1 37 PRO 37 37 37 PRO PRO D . n D 1 38 CYS 38 38 38 CYS CYS D . n D 1 39 GLU 39 39 39 GLU GLU D . n D 1 40 GLY 40 40 40 GLY GLY D . n D 1 41 PRO 41 41 41 PRO PRO D . n D 1 42 GLU 42 42 42 GLU GLU D . n D 1 43 LYS 43 43 43 LYS LYS D . n D 1 44 GLN 44 44 44 GLN GLN D . n D 1 45 THR 45 45 45 THR THR D . n D 1 46 LYS 46 46 46 LYS LYS D . n D 1 47 PHE 47 47 47 PHE PHE D . n D 1 48 CYS 48 48 48 CYS CYS D . n D 1 49 ASN 49 49 49 ASN ASN D . n D 1 50 ILE 50 50 50 ILE ILE D . n D 1 51 ALA 51 51 51 ALA ALA D . n D 1 52 LEU 52 52 52 LEU LEU D . n D 1 53 CYS 53 53 53 CYS CYS D . n D 1 54 PRO 54 54 54 PRO PRO D . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero E 2 FUC 1 E FUC 1 A FUC 101 n E 2 BGC 2 E BGC 2 A BGC 102 n F 2 FUC 1 F FUC 1 B FUC 101 n F 2 BGC 2 F BGC 2 B BGC 102 n G 2 FUC 1 G FUC 1 C FUC 101 n G 2 BGC 2 G BGC 2 C BGC 102 n H 2 FUC 1 H FUC 1 D FUC 101 n H 2 BGC 2 H BGC 2 D BGC 102 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MAN 1 201 201 MAN MAN A . J 3 MAN 1 202 301 MAN MAN A . K 3 MAN 1 201 201 MAN MAN B . L 3 MAN 1 202 301 MAN MAN B . M 3 MAN 1 201 201 MAN MAN C . N 3 MAN 1 202 301 MAN MAN C . O 3 MAN 1 201 201 MAN MAN D . P 3 MAN 1 202 301 MAN MAN D . Q 4 HOH 1 301 15 HOH HOH A . Q 4 HOH 2 302 92 HOH HOH A . Q 4 HOH 3 303 93 HOH HOH A . Q 4 HOH 4 304 201 HOH HOH A . Q 4 HOH 5 305 104 HOH HOH A . Q 4 HOH 6 306 173 HOH HOH A . Q 4 HOH 7 307 36 HOH HOH A . Q 4 HOH 8 308 12 HOH HOH A . Q 4 HOH 9 309 31 HOH HOH A . Q 4 HOH 10 310 7 HOH HOH A . Q 4 HOH 11 311 128 HOH HOH A . Q 4 HOH 12 312 1 HOH HOH A . Q 4 HOH 13 313 136 HOH HOH A . Q 4 HOH 14 314 149 HOH HOH A . Q 4 HOH 15 315 4 HOH HOH A . Q 4 HOH 16 316 49 HOH HOH A . Q 4 HOH 17 317 21 HOH HOH A . Q 4 HOH 18 318 45 HOH HOH A . Q 4 HOH 19 319 26 HOH HOH A . Q 4 HOH 20 320 115 HOH HOH A . Q 4 HOH 21 321 202 HOH HOH A . Q 4 HOH 22 322 6 HOH HOH A . Q 4 HOH 23 323 50 HOH HOH A . Q 4 HOH 24 324 99 HOH HOH A . Q 4 HOH 25 325 157 HOH HOH A . Q 4 HOH 26 326 101 HOH HOH A . Q 4 HOH 27 327 52 HOH HOH A . Q 4 HOH 28 328 53 HOH HOH A . Q 4 HOH 29 329 33 HOH HOH A . Q 4 HOH 30 330 25 HOH HOH A . Q 4 HOH 31 331 76 HOH HOH A . Q 4 HOH 32 332 62 HOH HOH A . Q 4 HOH 33 333 43 HOH HOH A . Q 4 HOH 34 334 14 HOH HOH A . Q 4 HOH 35 335 88 HOH HOH A . Q 4 HOH 36 336 110 HOH HOH A . Q 4 HOH 37 337 27 HOH HOH A . Q 4 HOH 38 338 174 HOH HOH A . Q 4 HOH 39 339 96 HOH HOH A . Q 4 HOH 40 340 140 HOH HOH A . Q 4 HOH 41 341 142 HOH HOH A . Q 4 HOH 42 342 89 HOH HOH A . Q 4 HOH 43 343 55 HOH HOH A . Q 4 HOH 44 344 38 HOH HOH A . Q 4 HOH 45 345 19 HOH HOH A . Q 4 HOH 46 346 203 HOH HOH A . Q 4 HOH 47 347 117 HOH HOH A . Q 4 HOH 48 348 193 HOH HOH A . Q 4 HOH 49 349 183 HOH HOH A . Q 4 HOH 50 350 154 HOH HOH A . Q 4 HOH 51 351 161 HOH HOH A . Q 4 HOH 52 352 123 HOH HOH A . Q 4 HOH 53 353 81 HOH HOH A . Q 4 HOH 54 354 179 HOH HOH A . Q 4 HOH 55 355 129 HOH HOH A . Q 4 HOH 56 356 150 HOH HOH A . Q 4 HOH 57 357 71 HOH HOH A . Q 4 HOH 58 358 133 HOH HOH A . Q 4 HOH 59 359 147 HOH HOH A . Q 4 HOH 60 360 155 HOH HOH A . Q 4 HOH 61 361 194 HOH HOH A . Q 4 HOH 62 362 120 HOH HOH A . R 4 HOH 1 301 67 HOH HOH B . R 4 HOH 2 302 11 HOH HOH B . R 4 HOH 3 303 171 HOH HOH B . R 4 HOH 4 304 95 HOH HOH B . R 4 HOH 5 305 78 HOH HOH B . R 4 HOH 6 306 47 HOH HOH B . R 4 HOH 7 307 35 HOH HOH B . R 4 HOH 8 308 9 HOH HOH B . R 4 HOH 9 309 59 HOH HOH B . R 4 HOH 10 310 109 HOH HOH B . R 4 HOH 11 311 116 HOH HOH B . R 4 HOH 12 312 69 HOH HOH B . R 4 HOH 13 313 10 HOH HOH B . R 4 HOH 14 314 121 HOH HOH B . R 4 HOH 15 315 34 HOH HOH B . R 4 HOH 16 316 113 HOH HOH B . R 4 HOH 17 317 57 HOH HOH B . R 4 HOH 18 318 188 HOH HOH B . R 4 HOH 19 319 86 HOH HOH B . R 4 HOH 20 320 32 HOH HOH B . R 4 HOH 21 321 94 HOH HOH B . R 4 HOH 22 322 28 HOH HOH B . R 4 HOH 23 323 18 HOH HOH B . R 4 HOH 24 324 126 HOH HOH B . R 4 HOH 25 325 189 HOH HOH B . R 4 HOH 26 326 176 HOH HOH B . R 4 HOH 27 327 63 HOH HOH B . R 4 HOH 28 328 151 HOH HOH B . R 4 HOH 29 329 159 HOH HOH B . R 4 HOH 30 330 23 HOH HOH B . R 4 HOH 31 331 75 HOH HOH B . R 4 HOH 32 332 41 HOH HOH B . R 4 HOH 33 333 137 HOH HOH B . R 4 HOH 34 334 118 HOH HOH B . R 4 HOH 35 335 166 HOH HOH B . R 4 HOH 36 336 122 HOH HOH B . R 4 HOH 37 337 73 HOH HOH B . R 4 HOH 38 338 167 HOH HOH B . R 4 HOH 39 339 127 HOH HOH B . R 4 HOH 40 340 192 HOH HOH B . S 4 HOH 1 301 42 HOH HOH C . S 4 HOH 2 302 199 HOH HOH C . S 4 HOH 3 303 119 HOH HOH C . S 4 HOH 4 304 20 HOH HOH C . S 4 HOH 5 305 22 HOH HOH C . S 4 HOH 6 306 114 HOH HOH C . S 4 HOH 7 307 169 HOH HOH C . S 4 HOH 8 308 13 HOH HOH C . S 4 HOH 9 309 30 HOH HOH C . S 4 HOH 10 310 178 HOH HOH C . S 4 HOH 11 311 2 HOH HOH C . S 4 HOH 12 312 60 HOH HOH C . S 4 HOH 13 313 56 HOH HOH C . S 4 HOH 14 314 44 HOH HOH C . S 4 HOH 15 315 190 HOH HOH C . S 4 HOH 16 316 54 HOH HOH C . S 4 HOH 17 317 131 HOH HOH C . S 4 HOH 18 318 108 HOH HOH C . S 4 HOH 19 319 164 HOH HOH C . S 4 HOH 20 320 17 HOH HOH C . S 4 HOH 21 321 83 HOH HOH C . S 4 HOH 22 322 74 HOH HOH C . S 4 HOH 23 323 138 HOH HOH C . S 4 HOH 24 324 85 HOH HOH C . S 4 HOH 25 325 29 HOH HOH C . S 4 HOH 26 326 46 HOH HOH C . S 4 HOH 27 327 48 HOH HOH C . S 4 HOH 28 328 134 HOH HOH C . S 4 HOH 29 329 107 HOH HOH C . S 4 HOH 30 330 3 HOH HOH C . S 4 HOH 31 331 61 HOH HOH C . S 4 HOH 32 332 162 HOH HOH C . S 4 HOH 33 333 139 HOH HOH C . S 4 HOH 34 334 124 HOH HOH C . S 4 HOH 35 335 143 HOH HOH C . T 4 HOH 1 301 200 HOH HOH D . T 4 HOH 2 302 130 HOH HOH D . T 4 HOH 3 303 197 HOH HOH D . T 4 HOH 4 304 8 HOH HOH D . T 4 HOH 5 305 87 HOH HOH D . T 4 HOH 6 306 80 HOH HOH D . T 4 HOH 7 307 58 HOH HOH D . T 4 HOH 8 308 68 HOH HOH D . T 4 HOH 9 309 170 HOH HOH D . T 4 HOH 10 310 112 HOH HOH D . T 4 HOH 11 311 98 HOH HOH D . T 4 HOH 12 312 40 HOH HOH D . T 4 HOH 13 313 37 HOH HOH D . T 4 HOH 14 314 24 HOH HOH D . T 4 HOH 15 315 168 HOH HOH D . T 4 HOH 16 316 51 HOH HOH D . T 4 HOH 17 317 105 HOH HOH D . T 4 HOH 18 318 77 HOH HOH D . T 4 HOH 19 319 148 HOH HOH D . T 4 HOH 20 320 39 HOH HOH D . T 4 HOH 21 321 5 HOH HOH D . T 4 HOH 22 322 180 HOH HOH D . T 4 HOH 23 323 66 HOH HOH D . T 4 HOH 24 324 65 HOH HOH D . T 4 HOH 25 325 145 HOH HOH D . T 4 HOH 26 326 84 HOH HOH D . T 4 HOH 27 327 82 HOH HOH D . T 4 HOH 28 328 90 HOH HOH D . T 4 HOH 29 329 125 HOH HOH D . T 4 HOH 30 330 16 HOH HOH D . T 4 HOH 31 331 152 HOH HOH D . T 4 HOH 32 332 97 HOH HOH D . T 4 HOH 33 333 106 HOH HOH D . T 4 HOH 34 334 102 HOH HOH D . T 4 HOH 35 335 135 HOH HOH D . T 4 HOH 36 336 160 HOH HOH D . T 4 HOH 37 337 72 HOH HOH D . T 4 HOH 38 338 64 HOH HOH D . T 4 HOH 39 339 172 HOH HOH D . T 4 HOH 40 340 177 HOH HOH D . T 4 HOH 41 341 70 HOH HOH D . T 4 HOH 42 342 175 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 39 ? CG ? A GLU 39 CG 2 1 Y 1 A GLU 39 ? CD ? A GLU 39 CD 3 1 Y 1 A GLU 39 ? OE1 ? A GLU 39 OE1 4 1 Y 1 A GLU 39 ? OE2 ? A GLU 39 OE2 5 1 Y 1 B GLN 32 ? CG ? B GLN 32 CG 6 1 Y 1 B GLN 32 ? CD ? B GLN 32 CD 7 1 Y 1 B GLN 32 ? OE1 ? B GLN 32 OE1 8 1 Y 1 B GLN 32 ? NE2 ? B GLN 32 NE2 9 1 Y 1 B GLU 39 ? CG ? B GLU 39 CG 10 1 Y 1 B GLU 39 ? CD ? B GLU 39 CD 11 1 Y 1 B GLU 39 ? OE1 ? B GLU 39 OE1 12 1 Y 1 B GLU 39 ? OE2 ? B GLU 39 OE2 13 1 Y 1 C GLU 39 ? CG ? C GLU 39 CG 14 1 Y 1 C GLU 39 ? CD ? C GLU 39 CD 15 1 Y 1 C GLU 39 ? OE1 ? C GLU 39 OE1 16 1 Y 1 C GLU 39 ? OE2 ? C GLU 39 OE2 17 1 Y 1 D GLU 39 ? CG ? D GLU 39 CG 18 1 Y 1 D GLU 39 ? CD ? D GLU 39 CD 19 1 Y 1 D GLU 39 ? OE1 ? D GLU 39 OE1 20 1 Y 1 D GLU 39 ? OE2 ? D GLU 39 OE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.4 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 109.670 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7R84 _cell.details ? _cell.formula_units_Z ? _cell.length_a 40.572 _cell.length_a_esd ? _cell.length_b 60.784 _cell.length_b_esd ? _cell.length_c 44.420 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7R84 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M acetate, pH 4.6, 2M sodium formate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-04-08 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97946 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7R84 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.3360 _reflns.d_resolution_low 41.830 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 44014 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.500 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.500 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.900 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.071 _reflns.pdbx_Rpim_I_all 0.027 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.340 1.360 ? ? 8079 ? ? ? 1557 68.400 ? ? ? ? 1.457 ? ? ? ? ? ? ? ? 5.200 ? ? ? 0.900 1.621 0.695 ? 1 1 0.359 ? ? ? ? ? ? ? ? ? ? 7.320 41.830 ? ? 1968 ? ? ? 305 99.800 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 6.500 ? ? ? 33.000 0.051 0.019 ? 2 1 0.998 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 94.770 _refine.B_iso_mean 30.2509 _refine.B_iso_min 12.610 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7R84 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.3360 _refine.ls_d_res_low 41.8270 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 43946 _refine.ls_number_reflns_R_free 1999 _refine.ls_number_reflns_R_work 41947 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.3400 _refine.ls_percent_reflns_R_free 4.5500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1789 _refine.ls_R_factor_R_free 0.2081 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1775 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'Complex structure of BAI1-RTN4R' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.2700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1800 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.3360 _refine_hist.d_res_low 41.8270 _refine_hist.number_atoms_solvent 179 _refine_hist.number_atoms_total 1895 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 197 _refine_hist.pdbx_B_iso_mean_ligand 39.44 _refine_hist.pdbx_B_iso_mean_solvent 36.46 _refine_hist.pdbx_number_atoms_protein 1544 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 172 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.34 1.3690 . . 105 2212 71.0000 . . . 0.4298 0.0000 0.3371 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3690 1.4061 . . 129 2698 86.0000 . . . 0.3433 0.0000 0.2692 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4061 1.4474 . . 149 3116 99.0000 . . . 0.2637 0.0000 0.2290 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4474 1.4942 . . 145 3069 99.0000 . . . 0.3009 0.0000 0.2035 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4942 1.5476 . . 146 3051 98.0000 . . . 0.2444 0.0000 0.1712 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5476 1.6095 . . 144 3018 96.0000 . . . 0.2183 0.0000 0.1639 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6095 1.6828 . . 148 3127 99.0000 . . . 0.2073 0.0000 0.1442 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6828 1.7715 . . 148 3098 99.0000 . . . 0.1774 0.0000 0.1453 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7715 1.8825 . . 144 3026 97.0000 . . . 0.2328 0.0000 0.1558 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8825 2.0278 . . 149 3119 98.0000 . . . 0.2211 0.0000 0.1629 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0278 2.2319 . . 147 3082 99.0000 . . . 0.1916 0.0000 0.1571 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2319 2.5548 . . 145 3045 97.0000 . . . 0.2119 0.0000 0.1854 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5548 3.2186 . . 150 3132 99.0000 . . . 0.1918 0.0000 0.1914 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2186 41.8270 . . 150 3154 98.0000 . . . 0.1954 0.0000 0.1774 . . . . . . . . . . . # _struct.entry_id 7R84 _struct.title 'Structure of mouse BAI1 (ADGRB1) TSR3 domain in P21 space group' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7R84 _struct_keywords.text 'adhesion GPCR, O-linked glycosylation, C-mannosylation, thrombospondin type 1 repeat (TSR) domain, cell adhesion' _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AGRB1_MOUSE _struct_ref.pdbx_db_accession Q3UHD1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code HGAWDEWSPWSLCSSTCGRGFRDRTRTCRPPQFGGNPCEGPEKQTKFCNIALCP _struct_ref.pdbx_align_begin 409 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7R84 A 1 ? 54 ? Q3UHD1 409 ? 462 ? 1 54 2 1 7R84 B 1 ? 54 ? Q3UHD1 409 ? 462 ? 1 54 3 1 7R84 C 1 ? 54 ? Q3UHD1 409 ? 462 ? 1 54 4 1 7R84 D 1 ? 54 ? Q3UHD1 409 ? 462 ? 1 54 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 4 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E,I,J,Q 2 1 B,F,K,L,R 3 1 C,G,M,N,S 4 1 D,H,O,P,T # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id C _struct_conf.beg_label_seq_id 30 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id C _struct_conf.end_label_seq_id 34 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id C _struct_conf.beg_auth_seq_id 30 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id C _struct_conf.end_auth_seq_id 34 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 48 SG ? ? A CYS 13 A CYS 48 1_555 ? ? ? ? ? ? ? 2.105 ? ? disulf2 disulf ? ? A CYS 17 SG ? ? ? 1_555 A CYS 53 SG ? ? A CYS 17 A CYS 53 1_555 ? ? ? ? ? ? ? 2.051 ? ? disulf3 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 38 SG ? ? A CYS 28 A CYS 38 1_555 ? ? ? ? ? ? ? 2.050 ? ? disulf4 disulf ? ? B CYS 13 SG ? ? ? 1_555 B CYS 48 SG ? ? B CYS 13 B CYS 48 1_555 ? ? ? ? ? ? ? 2.084 ? ? disulf5 disulf ? ? B CYS 17 SG ? ? ? 1_555 B CYS 53 SG ? ? B CYS 17 B CYS 53 1_555 ? ? ? ? ? ? ? 2.049 ? ? disulf6 disulf ? ? C CYS 13 SG ? ? ? 1_555 C CYS 48 SG ? ? C CYS 13 C CYS 48 1_555 ? ? ? ? ? ? ? 2.097 ? ? disulf7 disulf ? ? C CYS 17 SG ? ? ? 1_555 C CYS 53 SG ? ? C CYS 17 C CYS 53 1_555 ? ? ? ? ? ? ? 2.074 ? ? disulf8 disulf ? ? C CYS 28 SG ? ? ? 1_555 C CYS 38 SG ? ? C CYS 28 C CYS 38 1_555 ? ? ? ? ? ? ? 2.186 ? ? disulf9 disulf ? ? D CYS 13 SG ? ? ? 1_555 D CYS 48 SG ? ? D CYS 13 D CYS 48 1_555 ? ? ? ? ? ? ? 2.018 ? ? disulf10 disulf ? ? D CYS 17 SG ? ? ? 1_555 D CYS 53 SG ? ? D CYS 17 D CYS 53 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf11 disulf ? ? D CYS 28 SG ? ? ? 1_555 D CYS 38 SG ? ? D CYS 28 D CYS 38 1_555 ? ? ? ? ? ? ? 2.046 ? ? covale1 covale one ? A TRP 7 CD1 ? ? ? 1_555 I MAN . C1 ? ? A TRP 7 A MAN 201 1_555 ? ? ? ? ? ? ? 1.511 ? C-Mannosylation covale2 covale one ? A TRP 10 CD1 ? ? ? 1_555 J MAN . C1 ? ? A TRP 10 A MAN 202 1_555 ? ? ? ? ? ? ? 1.511 ? C-Mannosylation covale3 covale one ? A THR 16 OG1 ? ? ? 1_555 E FUC . C1 ? ? A THR 16 E FUC 1 1_555 ? ? ? ? ? ? ? 1.378 ? O-Glycosylation covale4 covale one ? B TRP 7 CD1 ? ? ? 1_555 K MAN . C1 ? ? B TRP 7 B MAN 201 1_555 ? ? ? ? ? ? ? 1.508 ? C-Mannosylation covale5 covale one ? B TRP 10 CD1 ? ? ? 1_555 L MAN . C1 ? ? B TRP 10 B MAN 202 1_555 ? ? ? ? ? ? ? 1.499 ? C-Mannosylation covale6 covale one ? B THR 16 OG1 ? ? ? 1_555 F FUC . C1 ? ? B THR 16 F FUC 1 1_555 ? ? ? ? ? ? ? 1.375 ? O-Glycosylation covale7 covale one ? C TRP 7 CD1 ? ? ? 1_555 M MAN . C1 ? ? C TRP 7 C MAN 201 1_555 ? ? ? ? ? ? ? 1.513 ? C-Mannosylation covale8 covale one ? C TRP 10 CD1 ? ? ? 1_555 N MAN . C1 ? ? C TRP 10 C MAN 202 1_555 ? ? ? ? ? ? ? 1.494 ? C-Mannosylation covale9 covale one ? C THR 16 OG1 ? ? ? 1_555 G FUC . C1 ? ? C THR 16 G FUC 1 1_555 ? ? ? ? ? ? ? 1.377 ? O-Glycosylation covale10 covale one ? D TRP 7 CD1 ? ? ? 1_555 O MAN . C1 ? ? D TRP 7 D MAN 201 1_555 ? ? ? ? ? ? ? 1.511 ? C-Mannosylation covale11 covale one ? D TRP 10 CD1 ? ? ? 1_555 P MAN . C1 ? ? D TRP 10 D MAN 202 1_555 ? ? ? ? ? ? ? 1.502 ? C-Mannosylation covale12 covale one ? D THR 16 OG1 ? ? ? 1_555 H FUC . C1 ? ? D THR 16 H FUC 1 1_555 ? ? ? ? ? ? ? 1.375 ? O-Glycosylation covale13 covale both ? E FUC . O3 ? ? ? 1_555 E BGC . C1 ? ? E FUC 1 E BGC 2 1_555 ? ? ? ? ? ? ? 1.412 ? ? covale14 covale both ? F FUC . O3 ? ? ? 1_555 F BGC . C1 ? ? F FUC 1 F BGC 2 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale15 covale both ? G FUC . O3 ? ? ? 1_555 G BGC . C1 ? ? G FUC 1 G BGC 2 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale16 covale both ? H FUC . O3 ? ? ? 1_555 H BGC . C1 ? ? H FUC 1 H BGC 2 1_555 ? ? ? ? ? ? ? 1.434 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 40 A . ? GLY 40 A PRO 41 A ? PRO 41 A 1 -9.40 2 GLY 40 C . ? GLY 40 C PRO 41 C ? PRO 41 C 1 0.72 3 GLY 40 D . ? GLY 40 D PRO 41 D ? PRO 41 D 1 -9.77 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 20 ? ARG A 26 ? GLY A 20 ARG A 26 AA1 2 GLU A 42 ? CYS A 48 ? GLU A 42 CYS A 48 AA1 3 GLU C 42 ? CYS C 48 ? GLU C 42 CYS C 48 AA1 4 GLY C 20 ? ARG C 26 ? GLY C 20 ARG C 26 AA2 1 GLY B 20 ? ARG B 26 ? GLY B 20 ARG B 26 AA2 2 GLU B 42 ? CYS B 48 ? GLU B 42 CYS B 48 AA2 3 GLU D 42 ? CYS D 48 ? GLU D 42 CYS D 48 AA2 4 GLY D 20 ? ARG D 26 ? GLY D 20 ARG D 26 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 24 ? N ARG A 24 O GLN A 44 ? O GLN A 44 AA1 2 3 N THR A 45 ? N THR A 45 O LYS C 43 ? O LYS C 43 AA1 3 4 O GLN C 44 ? O GLN C 44 N ARG C 24 ? N ARG C 24 AA2 1 2 N GLY B 20 ? N GLY B 20 O CYS B 48 ? O CYS B 48 AA2 2 3 N THR B 45 ? N THR B 45 O LYS D 43 ? O LYS D 43 AA2 3 4 O CYS D 48 ? O CYS D 48 N GLY D 20 ? N GLY D 20 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG1 _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 THR _pdbx_validate_close_contact.auth_seq_id_1 16 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O5 _pdbx_validate_close_contact.auth_asym_id_2 G _pdbx_validate_close_contact.auth_comp_id_2 FUC _pdbx_validate_close_contact.auth_seq_id_2 1 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 49 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -162.06 _pdbx_validate_torsion.psi 112.78 # _pdbx_entry_details.entry_id 7R84 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 1 ? A HIS 1 2 1 Y 1 A GLY 2 ? A GLY 2 3 1 Y 1 B HIS 1 ? B HIS 1 4 1 Y 1 B GLY 2 ? B GLY 2 5 1 Y 1 B ALA 3 ? B ALA 3 6 1 Y 1 B PHE 33 ? B PHE 33 7 1 Y 1 B GLY 34 ? B GLY 34 8 1 Y 1 B GLY 35 ? B GLY 35 9 1 Y 1 B ASN 36 ? B ASN 36 10 1 Y 1 B PRO 37 ? B PRO 37 11 1 Y 1 B CYS 38 ? B CYS 38 12 1 Y 1 C HIS 1 ? C HIS 1 13 1 Y 1 C GLY 2 ? C GLY 2 14 1 Y 1 D HIS 1 ? D HIS 1 15 1 Y 1 D GLY 2 ? D GLY 2 16 1 Y 1 D PHE 33 ? D PHE 33 17 1 Y 1 D GLY 34 ? D GLY 34 18 1 Y 1 D GLY 35 ? D GLY 35 19 1 Y 1 D ASN 36 ? D ASN 36 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BGC C2 C N R 74 BGC C3 C N S 75 BGC C4 C N S 76 BGC C5 C N R 77 BGC C6 C N N 78 BGC C1 C N R 79 BGC O1 O N N 80 BGC O2 O N N 81 BGC O3 O N N 82 BGC O4 O N N 83 BGC O5 O N N 84 BGC O6 O N N 85 BGC H2 H N N 86 BGC H3 H N N 87 BGC H4 H N N 88 BGC H5 H N N 89 BGC H61 H N N 90 BGC H62 H N N 91 BGC H1 H N N 92 BGC HO1 H N N 93 BGC HO2 H N N 94 BGC HO3 H N N 95 BGC HO4 H N N 96 BGC HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 FUC C1 C N R 112 FUC C2 C N S 113 FUC C3 C N R 114 FUC C4 C N S 115 FUC C5 C N S 116 FUC C6 C N N 117 FUC O1 O N N 118 FUC O2 O N N 119 FUC O3 O N N 120 FUC O4 O N N 121 FUC O5 O N N 122 FUC H1 H N N 123 FUC H2 H N N 124 FUC H3 H N N 125 FUC H4 H N N 126 FUC H5 H N N 127 FUC H61 H N N 128 FUC H62 H N N 129 FUC H63 H N N 130 FUC HO1 H N N 131 FUC HO2 H N N 132 FUC HO3 H N N 133 FUC HO4 H N N 134 GLN N N N N 135 GLN CA C N S 136 GLN C C N N 137 GLN O O N N 138 GLN CB C N N 139 GLN CG C N N 140 GLN CD C N N 141 GLN OE1 O N N 142 GLN NE2 N N N 143 GLN OXT O N N 144 GLN H H N N 145 GLN H2 H N N 146 GLN HA H N N 147 GLN HB2 H N N 148 GLN HB3 H N N 149 GLN HG2 H N N 150 GLN HG3 H N N 151 GLN HE21 H N N 152 GLN HE22 H N N 153 GLN HXT H N N 154 GLU N N N N 155 GLU CA C N S 156 GLU C C N N 157 GLU O O N N 158 GLU CB C N N 159 GLU CG C N N 160 GLU CD C N N 161 GLU OE1 O N N 162 GLU OE2 O N N 163 GLU OXT O N N 164 GLU H H N N 165 GLU H2 H N N 166 GLU HA H N N 167 GLU HB2 H N N 168 GLU HB3 H N N 169 GLU HG2 H N N 170 GLU HG3 H N N 171 GLU HE2 H N N 172 GLU HXT H N N 173 GLY N N N N 174 GLY CA C N N 175 GLY C C N N 176 GLY O O N N 177 GLY OXT O N N 178 GLY H H N N 179 GLY H2 H N N 180 GLY HA2 H N N 181 GLY HA3 H N N 182 GLY HXT H N N 183 HIS N N N N 184 HIS CA C N S 185 HIS C C N N 186 HIS O O N N 187 HIS CB C N N 188 HIS CG C Y N 189 HIS ND1 N Y N 190 HIS CD2 C Y N 191 HIS CE1 C Y N 192 HIS NE2 N Y N 193 HIS OXT O N N 194 HIS H H N N 195 HIS H2 H N N 196 HIS HA H N N 197 HIS HB2 H N N 198 HIS HB3 H N N 199 HIS HD1 H N N 200 HIS HD2 H N N 201 HIS HE1 H N N 202 HIS HE2 H N N 203 HIS HXT H N N 204 HOH O O N N 205 HOH H1 H N N 206 HOH H2 H N N 207 ILE N N N N 208 ILE CA C N S 209 ILE C C N N 210 ILE O O N N 211 ILE CB C N S 212 ILE CG1 C N N 213 ILE CG2 C N N 214 ILE CD1 C N N 215 ILE OXT O N N 216 ILE H H N N 217 ILE H2 H N N 218 ILE HA H N N 219 ILE HB H N N 220 ILE HG12 H N N 221 ILE HG13 H N N 222 ILE HG21 H N N 223 ILE HG22 H N N 224 ILE HG23 H N N 225 ILE HD11 H N N 226 ILE HD12 H N N 227 ILE HD13 H N N 228 ILE HXT H N N 229 LEU N N N N 230 LEU CA C N S 231 LEU C C N N 232 LEU O O N N 233 LEU CB C N N 234 LEU CG C N N 235 LEU CD1 C N N 236 LEU CD2 C N N 237 LEU OXT O N N 238 LEU H H N N 239 LEU H2 H N N 240 LEU HA H N N 241 LEU HB2 H N N 242 LEU HB3 H N N 243 LEU HG H N N 244 LEU HD11 H N N 245 LEU HD12 H N N 246 LEU HD13 H N N 247 LEU HD21 H N N 248 LEU HD22 H N N 249 LEU HD23 H N N 250 LEU HXT H N N 251 LYS N N N N 252 LYS CA C N S 253 LYS C C N N 254 LYS O O N N 255 LYS CB C N N 256 LYS CG C N N 257 LYS CD C N N 258 LYS CE C N N 259 LYS NZ N N N 260 LYS OXT O N N 261 LYS H H N N 262 LYS H2 H N N 263 LYS HA H N N 264 LYS HB2 H N N 265 LYS HB3 H N N 266 LYS HG2 H N N 267 LYS HG3 H N N 268 LYS HD2 H N N 269 LYS HD3 H N N 270 LYS HE2 H N N 271 LYS HE3 H N N 272 LYS HZ1 H N N 273 LYS HZ2 H N N 274 LYS HZ3 H N N 275 LYS HXT H N N 276 MAN C1 C N S 277 MAN C2 C N S 278 MAN C3 C N S 279 MAN C4 C N S 280 MAN C5 C N R 281 MAN C6 C N N 282 MAN O1 O N N 283 MAN O2 O N N 284 MAN O3 O N N 285 MAN O4 O N N 286 MAN O5 O N N 287 MAN O6 O N N 288 MAN H1 H N N 289 MAN H2 H N N 290 MAN H3 H N N 291 MAN H4 H N N 292 MAN H5 H N N 293 MAN H61 H N N 294 MAN H62 H N N 295 MAN HO1 H N N 296 MAN HO2 H N N 297 MAN HO3 H N N 298 MAN HO4 H N N 299 MAN HO6 H N N 300 PHE N N N N 301 PHE CA C N S 302 PHE C C N N 303 PHE O O N N 304 PHE CB C N N 305 PHE CG C Y N 306 PHE CD1 C Y N 307 PHE CD2 C Y N 308 PHE CE1 C Y N 309 PHE CE2 C Y N 310 PHE CZ C Y N 311 PHE OXT O N N 312 PHE H H N N 313 PHE H2 H N N 314 PHE HA H N N 315 PHE HB2 H N N 316 PHE HB3 H N N 317 PHE HD1 H N N 318 PHE HD2 H N N 319 PHE HE1 H N N 320 PHE HE2 H N N 321 PHE HZ H N N 322 PHE HXT H N N 323 PRO N N N N 324 PRO CA C N S 325 PRO C C N N 326 PRO O O N N 327 PRO CB C N N 328 PRO CG C N N 329 PRO CD C N N 330 PRO OXT O N N 331 PRO H H N N 332 PRO HA H N N 333 PRO HB2 H N N 334 PRO HB3 H N N 335 PRO HG2 H N N 336 PRO HG3 H N N 337 PRO HD2 H N N 338 PRO HD3 H N N 339 PRO HXT H N N 340 SER N N N N 341 SER CA C N S 342 SER C C N N 343 SER O O N N 344 SER CB C N N 345 SER OG O N N 346 SER OXT O N N 347 SER H H N N 348 SER H2 H N N 349 SER HA H N N 350 SER HB2 H N N 351 SER HB3 H N N 352 SER HG H N N 353 SER HXT H N N 354 THR N N N N 355 THR CA C N S 356 THR C C N N 357 THR O O N N 358 THR CB C N R 359 THR OG1 O N N 360 THR CG2 C N N 361 THR OXT O N N 362 THR H H N N 363 THR H2 H N N 364 THR HA H N N 365 THR HB H N N 366 THR HG1 H N N 367 THR HG21 H N N 368 THR HG22 H N N 369 THR HG23 H N N 370 THR HXT H N N 371 TRP N N N N 372 TRP CA C N S 373 TRP C C N N 374 TRP O O N N 375 TRP CB C N N 376 TRP CG C Y N 377 TRP CD1 C Y N 378 TRP CD2 C Y N 379 TRP NE1 N Y N 380 TRP CE2 C Y N 381 TRP CE3 C Y N 382 TRP CZ2 C Y N 383 TRP CZ3 C Y N 384 TRP CH2 C Y N 385 TRP OXT O N N 386 TRP H H N N 387 TRP H2 H N N 388 TRP HA H N N 389 TRP HB2 H N N 390 TRP HB3 H N N 391 TRP HD1 H N N 392 TRP HE1 H N N 393 TRP HE3 H N N 394 TRP HZ2 H N N 395 TRP HZ3 H N N 396 TRP HH2 H N N 397 TRP HXT H N N 398 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BGC C2 C3 sing N N 70 BGC C2 C1 sing N N 71 BGC C2 O2 sing N N 72 BGC C2 H2 sing N N 73 BGC C3 C4 sing N N 74 BGC C3 O3 sing N N 75 BGC C3 H3 sing N N 76 BGC C4 C5 sing N N 77 BGC C4 O4 sing N N 78 BGC C4 H4 sing N N 79 BGC C5 C6 sing N N 80 BGC C5 O5 sing N N 81 BGC C5 H5 sing N N 82 BGC C6 O6 sing N N 83 BGC C6 H61 sing N N 84 BGC C6 H62 sing N N 85 BGC C1 O1 sing N N 86 BGC C1 O5 sing N N 87 BGC C1 H1 sing N N 88 BGC O1 HO1 sing N N 89 BGC O2 HO2 sing N N 90 BGC O3 HO3 sing N N 91 BGC O4 HO4 sing N N 92 BGC O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 FUC C1 C2 sing N N 107 FUC C1 O1 sing N N 108 FUC C1 O5 sing N N 109 FUC C1 H1 sing N N 110 FUC C2 C3 sing N N 111 FUC C2 O2 sing N N 112 FUC C2 H2 sing N N 113 FUC C3 C4 sing N N 114 FUC C3 O3 sing N N 115 FUC C3 H3 sing N N 116 FUC C4 C5 sing N N 117 FUC C4 O4 sing N N 118 FUC C4 H4 sing N N 119 FUC C5 C6 sing N N 120 FUC C5 O5 sing N N 121 FUC C5 H5 sing N N 122 FUC C6 H61 sing N N 123 FUC C6 H62 sing N N 124 FUC C6 H63 sing N N 125 FUC O1 HO1 sing N N 126 FUC O2 HO2 sing N N 127 FUC O3 HO3 sing N N 128 FUC O4 HO4 sing N N 129 GLN N CA sing N N 130 GLN N H sing N N 131 GLN N H2 sing N N 132 GLN CA C sing N N 133 GLN CA CB sing N N 134 GLN CA HA sing N N 135 GLN C O doub N N 136 GLN C OXT sing N N 137 GLN CB CG sing N N 138 GLN CB HB2 sing N N 139 GLN CB HB3 sing N N 140 GLN CG CD sing N N 141 GLN CG HG2 sing N N 142 GLN CG HG3 sing N N 143 GLN CD OE1 doub N N 144 GLN CD NE2 sing N N 145 GLN NE2 HE21 sing N N 146 GLN NE2 HE22 sing N N 147 GLN OXT HXT sing N N 148 GLU N CA sing N N 149 GLU N H sing N N 150 GLU N H2 sing N N 151 GLU CA C sing N N 152 GLU CA CB sing N N 153 GLU CA HA sing N N 154 GLU C O doub N N 155 GLU C OXT sing N N 156 GLU CB CG sing N N 157 GLU CB HB2 sing N N 158 GLU CB HB3 sing N N 159 GLU CG CD sing N N 160 GLU CG HG2 sing N N 161 GLU CG HG3 sing N N 162 GLU CD OE1 doub N N 163 GLU CD OE2 sing N N 164 GLU OE2 HE2 sing N N 165 GLU OXT HXT sing N N 166 GLY N CA sing N N 167 GLY N H sing N N 168 GLY N H2 sing N N 169 GLY CA C sing N N 170 GLY CA HA2 sing N N 171 GLY CA HA3 sing N N 172 GLY C O doub N N 173 GLY C OXT sing N N 174 GLY OXT HXT sing N N 175 HIS N CA sing N N 176 HIS N H sing N N 177 HIS N H2 sing N N 178 HIS CA C sing N N 179 HIS CA CB sing N N 180 HIS CA HA sing N N 181 HIS C O doub N N 182 HIS C OXT sing N N 183 HIS CB CG sing N N 184 HIS CB HB2 sing N N 185 HIS CB HB3 sing N N 186 HIS CG ND1 sing Y N 187 HIS CG CD2 doub Y N 188 HIS ND1 CE1 doub Y N 189 HIS ND1 HD1 sing N N 190 HIS CD2 NE2 sing Y N 191 HIS CD2 HD2 sing N N 192 HIS CE1 NE2 sing Y N 193 HIS CE1 HE1 sing N N 194 HIS NE2 HE2 sing N N 195 HIS OXT HXT sing N N 196 HOH O H1 sing N N 197 HOH O H2 sing N N 198 ILE N CA sing N N 199 ILE N H sing N N 200 ILE N H2 sing N N 201 ILE CA C sing N N 202 ILE CA CB sing N N 203 ILE CA HA sing N N 204 ILE C O doub N N 205 ILE C OXT sing N N 206 ILE CB CG1 sing N N 207 ILE CB CG2 sing N N 208 ILE CB HB sing N N 209 ILE CG1 CD1 sing N N 210 ILE CG1 HG12 sing N N 211 ILE CG1 HG13 sing N N 212 ILE CG2 HG21 sing N N 213 ILE CG2 HG22 sing N N 214 ILE CG2 HG23 sing N N 215 ILE CD1 HD11 sing N N 216 ILE CD1 HD12 sing N N 217 ILE CD1 HD13 sing N N 218 ILE OXT HXT sing N N 219 LEU N CA sing N N 220 LEU N H sing N N 221 LEU N H2 sing N N 222 LEU CA C sing N N 223 LEU CA CB sing N N 224 LEU CA HA sing N N 225 LEU C O doub N N 226 LEU C OXT sing N N 227 LEU CB CG sing N N 228 LEU CB HB2 sing N N 229 LEU CB HB3 sing N N 230 LEU CG CD1 sing N N 231 LEU CG CD2 sing N N 232 LEU CG HG sing N N 233 LEU CD1 HD11 sing N N 234 LEU CD1 HD12 sing N N 235 LEU CD1 HD13 sing N N 236 LEU CD2 HD21 sing N N 237 LEU CD2 HD22 sing N N 238 LEU CD2 HD23 sing N N 239 LEU OXT HXT sing N N 240 LYS N CA sing N N 241 LYS N H sing N N 242 LYS N H2 sing N N 243 LYS CA C sing N N 244 LYS CA CB sing N N 245 LYS CA HA sing N N 246 LYS C O doub N N 247 LYS C OXT sing N N 248 LYS CB CG sing N N 249 LYS CB HB2 sing N N 250 LYS CB HB3 sing N N 251 LYS CG CD sing N N 252 LYS CG HG2 sing N N 253 LYS CG HG3 sing N N 254 LYS CD CE sing N N 255 LYS CD HD2 sing N N 256 LYS CD HD3 sing N N 257 LYS CE NZ sing N N 258 LYS CE HE2 sing N N 259 LYS CE HE3 sing N N 260 LYS NZ HZ1 sing N N 261 LYS NZ HZ2 sing N N 262 LYS NZ HZ3 sing N N 263 LYS OXT HXT sing N N 264 MAN C1 C2 sing N N 265 MAN C1 O1 sing N N 266 MAN C1 O5 sing N N 267 MAN C1 H1 sing N N 268 MAN C2 C3 sing N N 269 MAN C2 O2 sing N N 270 MAN C2 H2 sing N N 271 MAN C3 C4 sing N N 272 MAN C3 O3 sing N N 273 MAN C3 H3 sing N N 274 MAN C4 C5 sing N N 275 MAN C4 O4 sing N N 276 MAN C4 H4 sing N N 277 MAN C5 C6 sing N N 278 MAN C5 O5 sing N N 279 MAN C5 H5 sing N N 280 MAN C6 O6 sing N N 281 MAN C6 H61 sing N N 282 MAN C6 H62 sing N N 283 MAN O1 HO1 sing N N 284 MAN O2 HO2 sing N N 285 MAN O3 HO3 sing N N 286 MAN O4 HO4 sing N N 287 MAN O6 HO6 sing N N 288 PHE N CA sing N N 289 PHE N H sing N N 290 PHE N H2 sing N N 291 PHE CA C sing N N 292 PHE CA CB sing N N 293 PHE CA HA sing N N 294 PHE C O doub N N 295 PHE C OXT sing N N 296 PHE CB CG sing N N 297 PHE CB HB2 sing N N 298 PHE CB HB3 sing N N 299 PHE CG CD1 doub Y N 300 PHE CG CD2 sing Y N 301 PHE CD1 CE1 sing Y N 302 PHE CD1 HD1 sing N N 303 PHE CD2 CE2 doub Y N 304 PHE CD2 HD2 sing N N 305 PHE CE1 CZ doub Y N 306 PHE CE1 HE1 sing N N 307 PHE CE2 CZ sing Y N 308 PHE CE2 HE2 sing N N 309 PHE CZ HZ sing N N 310 PHE OXT HXT sing N N 311 PRO N CA sing N N 312 PRO N CD sing N N 313 PRO N H sing N N 314 PRO CA C sing N N 315 PRO CA CB sing N N 316 PRO CA HA sing N N 317 PRO C O doub N N 318 PRO C OXT sing N N 319 PRO CB CG sing N N 320 PRO CB HB2 sing N N 321 PRO CB HB3 sing N N 322 PRO CG CD sing N N 323 PRO CG HG2 sing N N 324 PRO CG HG3 sing N N 325 PRO CD HD2 sing N N 326 PRO CD HD3 sing N N 327 PRO OXT HXT sing N N 328 SER N CA sing N N 329 SER N H sing N N 330 SER N H2 sing N N 331 SER CA C sing N N 332 SER CA CB sing N N 333 SER CA HA sing N N 334 SER C O doub N N 335 SER C OXT sing N N 336 SER CB OG sing N N 337 SER CB HB2 sing N N 338 SER CB HB3 sing N N 339 SER OG HG sing N N 340 SER OXT HXT sing N N 341 THR N CA sing N N 342 THR N H sing N N 343 THR N H2 sing N N 344 THR CA C sing N N 345 THR CA CB sing N N 346 THR CA HA sing N N 347 THR C O doub N N 348 THR C OXT sing N N 349 THR CB OG1 sing N N 350 THR CB CG2 sing N N 351 THR CB HB sing N N 352 THR OG1 HG1 sing N N 353 THR CG2 HG21 sing N N 354 THR CG2 HG22 sing N N 355 THR CG2 HG23 sing N N 356 THR OXT HXT sing N N 357 TRP N CA sing N N 358 TRP N H sing N N 359 TRP N H2 sing N N 360 TRP CA C sing N N 361 TRP CA CB sing N N 362 TRP CA HA sing N N 363 TRP C O doub N N 364 TRP C OXT sing N N 365 TRP CB CG sing N N 366 TRP CB HB2 sing N N 367 TRP CB HB3 sing N N 368 TRP CG CD1 doub Y N 369 TRP CG CD2 sing Y N 370 TRP CD1 NE1 sing Y N 371 TRP CD1 HD1 sing N N 372 TRP CD2 CE2 doub Y N 373 TRP CD2 CE3 sing Y N 374 TRP NE1 CE2 sing Y N 375 TRP NE1 HE1 sing N N 376 TRP CE2 CZ2 sing Y N 377 TRP CE3 CZ3 doub Y N 378 TRP CE3 HE3 sing N N 379 TRP CZ2 CH2 doub Y N 380 TRP CZ2 HZ2 sing N N 381 TRP CZ3 CH2 sing Y N 382 TRP CZ3 HZ3 sing N N 383 TRP CH2 HH2 sing N N 384 TRP OXT HXT sing N N 385 # _pdbx_audit_support.funding_organization 'Howard Hughes Medical Institute (HHMI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 FUC 1 n 2 BGC 2 n # _pdbx_initial_refinement_model.accession_code 7R86 _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'Complex structure of BAI1-RTN4R' # _atom_sites.entry_id 7R84 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.024648 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008813 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016452 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023908 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_