data_7RX5 # _entry.id 7RX5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.361 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7RX5 pdb_00007rx5 10.2210/pdb7rx5/pdb WWPDB D_1000259174 ? ? EMDB EMD-24725 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM reconstruction of Form1-N2 nanotube (Form I like)' _pdbx_database_related.db_id EMD-24725 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7RX5 _pdbx_database_status.recvd_initial_deposition_date 2021-08-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, F.' 1 0000-0003-1008-663X 'Gnewou, O.M.' 2 ? 'Solemanifar, A.' 3 ? 'Xu, C.' 4 ? 'Egelman, E.H.' 5 ? 'Conticello, V.P.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chem.Rev. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-6890 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 122 _citation.language ? _citation.page_first 14055 _citation.page_last 14065 _citation.title 'Cryo-EM of Helical Polymers.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.chemrev.1c00753 _citation.pdbx_database_id_PubMed 35133794 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, F.' 1 ? primary 'Gnewou, O.' 2 ? primary 'Solemanifar, A.' 3 ? primary 'Conticello, V.P.' 4 ? primary 'Egelman, E.H.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'F1-N2 nanotube' _entity.formula_weight 3255.659 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code QAEILKADAENNRAYARILEAHAEILKAQ _entity_poly.pdbx_seq_one_letter_code_can QAEILKADAENNRAYARILEAHAEILKAQ _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ALA n 1 3 GLU n 1 4 ILE n 1 5 LEU n 1 6 LYS n 1 7 ALA n 1 8 ASP n 1 9 ALA n 1 10 GLU n 1 11 ASN n 1 12 ASN n 1 13 ARG n 1 14 ALA n 1 15 TYR n 1 16 ALA n 1 17 ARG n 1 18 ILE n 1 19 LEU n 1 20 GLU n 1 21 ALA n 1 22 HIS n 1 23 ALA n 1 24 GLU n 1 25 ILE n 1 26 LEU n 1 27 LYS n 1 28 ALA n 1 29 GLN n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 29 _pdbx_entity_src_syn.organism_scientific 'Synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7RX5 _struct_ref.pdbx_db_accession 7RX5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7RX5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 29 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7RX5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 29 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 29 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7RX5 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7RX5 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 9160 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.232 ? 12280 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 3.140 ? 1240 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.028 ? 1400 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.001 ? 1640 ? f_plane_restr ? ? # _struct.entry_id 7RX5 _struct.title 'Cryo-EM reconstruction of Form1-N2 nanotube (Form I like)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7RX5 _struct_keywords.text 'helical symmetry, peptide nanotube, self-assembly, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id GLN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 1 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 29 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 1 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 29 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 7RX5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 GLN 29 29 29 GLN GLN A . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 40-meric 40 2 'helical asymmetric unit' ? monomeric 1 3 'helical asymmetric unit, std helical frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-40)' A 2 21 A 3 H A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? -0.40817113 -0.91290543 0.00000000 0.00000 0.91290543 -0.40817113 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -41.12000 2 'helical symmetry operation' ? ? 0.40817113 0.91290543 0.00000000 0.00000 -0.91290543 0.40817113 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -41.12000 3 'helical symmetry operation' ? ? 0.86002153 -0.51025775 0.00000000 0.00000 0.51025775 0.86002153 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -37.00800 4 'helical symmetry operation' ? ? -0.86002153 0.51025775 0.00000000 0.00000 -0.51025775 -0.86002153 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -37.00800 5 'helical symmetry operation' ? ? 0.60559959 0.79576953 0.00000000 0.00000 -0.79576953 0.60559959 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -32.89600 6 'helical symmetry operation' ? ? -0.60559959 -0.79576953 0.00000000 0.00000 0.79576953 -0.60559959 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -32.89600 7 'helical symmetry operation' ? ? -0.72099874 0.69293637 0.00000000 0.00000 -0.69293637 -0.72099874 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -28.78400 8 'helical symmetry operation' ? ? 0.72099874 -0.69293637 0.00000000 0.00000 0.69293637 0.72099874 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -28.78400 9 'helical symmetry operation' ? ? -0.77111366 -0.63669752 0.00000000 0.00000 0.63669752 -0.77111366 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -24.67200 10 'helical symmetry operation' ? ? 0.77111366 0.63669752 0.00000000 0.00000 -0.63669752 0.77111366 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -24.67200 11 'helical symmetry operation' ? ? 0.54398018 -0.83909807 0.00000000 0.00000 0.83909807 0.54398018 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -20.56000 12 'helical symmetry operation' ? ? -0.54398018 0.83909807 0.00000000 0.00000 -0.83909807 -0.54398018 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -20.56000 13 'helical symmetry operation' ? ? 0.89599096 0.44407230 0.00000000 0.00000 -0.44407230 0.89599096 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -16.44800 14 'helical symmetry operation' ? ? -0.89599096 -0.44407230 0.00000000 0.00000 0.44407230 -0.89599096 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -16.44800 15 'helical symmetry operation' ? ? -0.33829450 0.94104029 0.00000000 0.00000 -0.94104029 -0.33829450 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -12.33600 16 'helical symmetry operation' ? ? 0.33829450 -0.94104029 0.00000000 0.00000 0.94104029 0.33829450 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -12.33600 17 'helical symmetry operation' ? ? -0.97365059 -0.22804500 0.00000000 0.00000 0.22804500 -0.97365059 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -8.22400 18 'helical symmetry operation' ? ? 0.97365059 0.22804500 0.00000000 0.00000 -0.22804500 0.97365059 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -8.22400 19 'helical symmetry operation' ? ? 0.11478111 -0.99339081 0.00000000 0.00000 0.99339081 0.11478111 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -4.11200 20 'helical symmetry operation' ? ? -0.11478111 0.99339081 0.00000000 0.00000 -0.99339081 -0.11478111 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -4.11200 21 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 22 'helical symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 23 'helical symmetry operation' ? ? 0.11478111 0.99339081 0.00000000 0.00000 -0.99339081 0.11478111 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 4.11200 24 'helical symmetry operation' ? ? -0.11478111 -0.99339081 0.00000000 0.00000 0.99339081 -0.11478111 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 4.11200 25 'helical symmetry operation' ? ? -0.97365059 0.22804500 0.00000000 0.00000 -0.22804500 -0.97365059 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 8.22400 26 'helical symmetry operation' ? ? 0.97365059 -0.22804500 0.00000000 0.00000 0.22804500 0.97365059 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 8.22400 27 'helical symmetry operation' ? ? -0.33829450 -0.94104029 0.00000000 0.00000 0.94104029 -0.33829450 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 12.33600 28 'helical symmetry operation' ? ? 0.33829450 0.94104029 0.00000000 0.00000 -0.94104029 0.33829450 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 12.33600 29 'helical symmetry operation' ? ? 0.89599096 -0.44407230 0.00000000 0.00000 0.44407230 0.89599096 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 16.44800 30 'helical symmetry operation' ? ? -0.89599096 0.44407230 0.00000000 0.00000 -0.44407230 -0.89599096 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 16.44800 31 'helical symmetry operation' ? ? 0.54398018 0.83909807 0.00000000 0.00000 -0.83909807 0.54398018 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 20.56000 32 'helical symmetry operation' ? ? -0.54398018 -0.83909807 0.00000000 0.00000 0.83909807 -0.54398018 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 20.56000 33 'helical symmetry operation' ? ? -0.77111366 0.63669752 0.00000000 0.00000 -0.63669752 -0.77111366 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 24.67200 34 'helical symmetry operation' ? ? 0.77111366 -0.63669752 0.00000000 0.00000 0.63669752 0.77111366 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 24.67200 35 'helical symmetry operation' ? ? -0.72099874 -0.69293637 0.00000000 0.00000 0.69293637 -0.72099874 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 28.78400 36 'helical symmetry operation' ? ? 0.72099874 0.69293637 0.00000000 0.00000 -0.69293637 0.72099874 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 28.78400 37 'helical symmetry operation' ? ? 0.60559959 -0.79576953 0.00000000 0.00000 0.79576953 0.60559959 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 32.89600 38 'helical symmetry operation' ? ? -0.60559959 0.79576953 0.00000000 0.00000 -0.79576953 -0.60559959 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 32.89600 39 'helical symmetry operation' ? ? 0.86002153 0.51025775 0.00000000 0.00000 -0.51025775 0.86002153 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 37.00800 40 'helical symmetry operation' ? ? -0.86002153 -0.51025775 0.00000000 0.00000 0.51025775 -0.86002153 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 37.00800 # _pdbx_helical_symmetry.entry_id 7RX5 _pdbx_helical_symmetry.number_of_operations 40 _pdbx_helical_symmetry.rotation_per_n_subunits -83.409000 _pdbx_helical_symmetry.rise_per_n_subunits 4.112000 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 2 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-08 2 'Structure model' 1 1 2022-02-23 3 'Structure model' 1 2 2022-03-02 4 'Structure model' 1 3 2022-09-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_struct_oper_list 4 3 'Structure model' citation 5 4 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation.year' 8 2 'Structure model' '_pdbx_struct_oper_list.name' 9 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 10 2 'Structure model' '_pdbx_struct_oper_list.type' 11 3 'Structure model' '_citation.pdbx_database_id_PubMed' 12 3 'Structure model' '_citation.title' 13 4 'Structure model' '_citation.journal_volume' 14 4 'Structure model' '_citation.page_first' 15 4 'Structure model' '_citation.page_last' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 7RX5 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7RX5 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 1000000 _em_3d_reconstruction.resolution 3.4 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'F1-N2 nanotube' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7RX5 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7RX5 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7RX5 _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Synthetic construct' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -83.409 _em_helical_entity.axial_rise_per_subunit 4.112 _em_helical_entity.axial_symmetry C2 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' NSF-DMR-1533958 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM122510 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' K99GM138756 3 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? #