data_7S21 # _entry.id 7S21 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.357 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7S21 pdb_00007s21 10.2210/pdb7s21/pdb WWPDB D_1000259427 ? ? EMDB EMD-24815 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'M. xanthus encapsulin shell protein EncA with T=1 symmetry' _pdbx_database_related.db_id EMD-24815 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7S21 _pdbx_database_status.recvd_initial_deposition_date 2021-09-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Eren, E.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID 0000-0002-7942-4943 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 30 _citation.language ? _citation.page_first 551 _citation.page_last 563.e4 _citation.title ;Structural characterization of the Myxococcus xanthus encapsulin and ferritin-like cargo system gives insight into its iron storage mechanism. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2022.01.008 _citation.pdbx_database_id_PubMed 35150605 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eren, E.' 1 ? primary 'Wang, B.' 2 ? primary 'Winkler, D.C.' 3 ? primary 'Watts, N.R.' 4 ? primary 'Steven, A.C.' 5 ? primary 'Wingfield, P.T.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7S21 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7S21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description EncA _entity.formula_weight 33505.074 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHMPLEPHFMPDFLGHAENPLREEEWARLNETVIQVARRSLVGRRILDIYGPLGAGVQTVPYDEFQGVSPGAVDI VGEQETAMVFTDARKFKTIPIIYKDFLLHWRDIEAARTHNMPLDVSAAAGAAALCAQQEDELIFYGDARLGYEGLMTANG RLTVPLGDWTSPGGGFQAIVEATRKLNEQGHFGPYAVVLSPRLYSQLHRIYEKTGVLEIETIRQLASDGVYQSNRLRGES GVVVSTGRENMDLAVSMDMVAAYLGASRMNHPFRVLEALLLRIKHPDAICTLEGAGATERR ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHMPLEPHFMPDFLGHAENPLREEEWARLNETVIQVARRSLVGRRILDIYGPLGAGVQTVPYDEFQGVSPGAVDI VGEQETAMVFTDARKFKTIPIIYKDFLLHWRDIEAARTHNMPLDVSAAAGAAALCAQQEDELIFYGDARLGYEGLMTANG RLTVPLGDWTSPGGGFQAIVEATRKLNEQGHFGPYAVVLSPRLYSQLHRIYEKTGVLEIETIRQLASDGVYQSNRLRGES GVVVSTGRENMDLAVSMDMVAAYLGASRMNHPFRVLEALLLRIKHPDAICTLEGAGATERR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 MET n 1 9 PRO n 1 10 LEU n 1 11 GLU n 1 12 PRO n 1 13 HIS n 1 14 PHE n 1 15 MET n 1 16 PRO n 1 17 ASP n 1 18 PHE n 1 19 LEU n 1 20 GLY n 1 21 HIS n 1 22 ALA n 1 23 GLU n 1 24 ASN n 1 25 PRO n 1 26 LEU n 1 27 ARG n 1 28 GLU n 1 29 GLU n 1 30 GLU n 1 31 TRP n 1 32 ALA n 1 33 ARG n 1 34 LEU n 1 35 ASN n 1 36 GLU n 1 37 THR n 1 38 VAL n 1 39 ILE n 1 40 GLN n 1 41 VAL n 1 42 ALA n 1 43 ARG n 1 44 ARG n 1 45 SER n 1 46 LEU n 1 47 VAL n 1 48 GLY n 1 49 ARG n 1 50 ARG n 1 51 ILE n 1 52 LEU n 1 53 ASP n 1 54 ILE n 1 55 TYR n 1 56 GLY n 1 57 PRO n 1 58 LEU n 1 59 GLY n 1 60 ALA n 1 61 GLY n 1 62 VAL n 1 63 GLN n 1 64 THR n 1 65 VAL n 1 66 PRO n 1 67 TYR n 1 68 ASP n 1 69 GLU n 1 70 PHE n 1 71 GLN n 1 72 GLY n 1 73 VAL n 1 74 SER n 1 75 PRO n 1 76 GLY n 1 77 ALA n 1 78 VAL n 1 79 ASP n 1 80 ILE n 1 81 VAL n 1 82 GLY n 1 83 GLU n 1 84 GLN n 1 85 GLU n 1 86 THR n 1 87 ALA n 1 88 MET n 1 89 VAL n 1 90 PHE n 1 91 THR n 1 92 ASP n 1 93 ALA n 1 94 ARG n 1 95 LYS n 1 96 PHE n 1 97 LYS n 1 98 THR n 1 99 ILE n 1 100 PRO n 1 101 ILE n 1 102 ILE n 1 103 TYR n 1 104 LYS n 1 105 ASP n 1 106 PHE n 1 107 LEU n 1 108 LEU n 1 109 HIS n 1 110 TRP n 1 111 ARG n 1 112 ASP n 1 113 ILE n 1 114 GLU n 1 115 ALA n 1 116 ALA n 1 117 ARG n 1 118 THR n 1 119 HIS n 1 120 ASN n 1 121 MET n 1 122 PRO n 1 123 LEU n 1 124 ASP n 1 125 VAL n 1 126 SER n 1 127 ALA n 1 128 ALA n 1 129 ALA n 1 130 GLY n 1 131 ALA n 1 132 ALA n 1 133 ALA n 1 134 LEU n 1 135 CYS n 1 136 ALA n 1 137 GLN n 1 138 GLN n 1 139 GLU n 1 140 ASP n 1 141 GLU n 1 142 LEU n 1 143 ILE n 1 144 PHE n 1 145 TYR n 1 146 GLY n 1 147 ASP n 1 148 ALA n 1 149 ARG n 1 150 LEU n 1 151 GLY n 1 152 TYR n 1 153 GLU n 1 154 GLY n 1 155 LEU n 1 156 MET n 1 157 THR n 1 158 ALA n 1 159 ASN n 1 160 GLY n 1 161 ARG n 1 162 LEU n 1 163 THR n 1 164 VAL n 1 165 PRO n 1 166 LEU n 1 167 GLY n 1 168 ASP n 1 169 TRP n 1 170 THR n 1 171 SER n 1 172 PRO n 1 173 GLY n 1 174 GLY n 1 175 GLY n 1 176 PHE n 1 177 GLN n 1 178 ALA n 1 179 ILE n 1 180 VAL n 1 181 GLU n 1 182 ALA n 1 183 THR n 1 184 ARG n 1 185 LYS n 1 186 LEU n 1 187 ASN n 1 188 GLU n 1 189 GLN n 1 190 GLY n 1 191 HIS n 1 192 PHE n 1 193 GLY n 1 194 PRO n 1 195 TYR n 1 196 ALA n 1 197 VAL n 1 198 VAL n 1 199 LEU n 1 200 SER n 1 201 PRO n 1 202 ARG n 1 203 LEU n 1 204 TYR n 1 205 SER n 1 206 GLN n 1 207 LEU n 1 208 HIS n 1 209 ARG n 1 210 ILE n 1 211 TYR n 1 212 GLU n 1 213 LYS n 1 214 THR n 1 215 GLY n 1 216 VAL n 1 217 LEU n 1 218 GLU n 1 219 ILE n 1 220 GLU n 1 221 THR n 1 222 ILE n 1 223 ARG n 1 224 GLN n 1 225 LEU n 1 226 ALA n 1 227 SER n 1 228 ASP n 1 229 GLY n 1 230 VAL n 1 231 TYR n 1 232 GLN n 1 233 SER n 1 234 ASN n 1 235 ARG n 1 236 LEU n 1 237 ARG n 1 238 GLY n 1 239 GLU n 1 240 SER n 1 241 GLY n 1 242 VAL n 1 243 VAL n 1 244 VAL n 1 245 SER n 1 246 THR n 1 247 GLY n 1 248 ARG n 1 249 GLU n 1 250 ASN n 1 251 MET n 1 252 ASP n 1 253 LEU n 1 254 ALA n 1 255 VAL n 1 256 SER n 1 257 MET n 1 258 ASP n 1 259 MET n 1 260 VAL n 1 261 ALA n 1 262 ALA n 1 263 TYR n 1 264 LEU n 1 265 GLY n 1 266 ALA n 1 267 SER n 1 268 ARG n 1 269 MET n 1 270 ASN n 1 271 HIS n 1 272 PRO n 1 273 PHE n 1 274 ARG n 1 275 VAL n 1 276 LEU n 1 277 GLU n 1 278 ALA n 1 279 LEU n 1 280 LEU n 1 281 LEU n 1 282 ARG n 1 283 ILE n 1 284 LYS n 1 285 HIS n 1 286 PRO n 1 287 ASP n 1 288 ALA n 1 289 ILE n 1 290 CYS n 1 291 THR n 1 292 LEU n 1 293 GLU n 1 294 GLY n 1 295 ALA n 1 296 GLY n 1 297 ALA n 1 298 THR n 1 299 GLU n 1 300 ARG n 1 301 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 301 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MXAN_3556 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Myxococcus xanthus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 34 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q1D6H4_MYXXD _struct_ref.pdbx_db_accession Q1D6H4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MPLEPHFMPDFLGHAENPLREEEWARLNETVIQVARRSLVGRRILDIYGPLGAGVQTVPYDEFQGVSPGAVDIVGEQETA MVFTDARKFKTIPIIYKDFLLHWRDIEAARTHNMPLDVSAAAGAAALCAQQEDELIFYGDARLGYEGLMTANGRLTVPLG DWTSPGGGFQAIVEATRKLNEQGHFGPYAVVLSPRLYSQLHRIYEKTGVLEIETIRQLASDGVYQSNRLRGESGVVVSTG RENMDLAVSMDMVAAYLGASRMNHPFRVLEALLLRIKHPDAICTLEGAGATERR ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7S21 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 301 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q1D6H4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 294 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -7 _struct_ref_seq.pdbx_auth_seq_align_end 286 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7S21 MET A 1 ? UNP Q1D6H4 ? ? 'initiating methionine' -14 1 1 7S21 HIS A 2 ? UNP Q1D6H4 ? ? 'expression tag' -13 2 1 7S21 HIS A 3 ? UNP Q1D6H4 ? ? 'expression tag' -12 3 1 7S21 HIS A 4 ? UNP Q1D6H4 ? ? 'expression tag' -11 4 1 7S21 HIS A 5 ? UNP Q1D6H4 ? ? 'expression tag' -10 5 1 7S21 HIS A 6 ? UNP Q1D6H4 ? ? 'expression tag' -9 6 1 7S21 HIS A 7 ? UNP Q1D6H4 ? ? 'expression tag' -8 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7S21 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7S21 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 2082 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.727 ? 2826 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 12.063 ? 293 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.044 ? 318 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.007 ? 369 ? f_plane_restr ? ? # _struct.entry_id 7S21 _struct.title 'M. xanthus encapsulin shell protein EncA with T=1 symmetry' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7S21 _struct_keywords.text 'encapsulin, nanocage, iron storage, bacterial nano-compartment, CYTOSOLIC PROTEIN, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 27 ? LEU A 46 ? ARG A 12 LEU A 31 1 ? 20 HELX_P HELX_P2 AA2 VAL A 47 ? ILE A 51 ? VAL A 32 ILE A 36 5 ? 5 HELX_P HELX_P3 AA3 HIS A 109 ? HIS A 119 ? HIS A 94 HIS A 104 1 ? 11 HELX_P HELX_P4 AA4 VAL A 125 ? TYR A 145 ? VAL A 110 TYR A 130 1 ? 21 HELX_P HELX_P5 AA5 GLY A 175 ? GLN A 189 ? GLY A 160 GLN A 174 1 ? 15 HELX_P HELX_P6 AA6 SER A 200 ? ILE A 210 ? SER A 185 ILE A 195 1 ? 11 HELX_P HELX_P7 AA7 ILE A 219 ? SER A 227 ? ILE A 204 SER A 212 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 64 ? PRO A 66 ? THR A 49 PRO A 51 AA1 2 PHE A 96 ? THR A 98 ? PHE A 81 THR A 83 AA2 1 ILE A 102 ? LEU A 108 ? ILE A 87 LEU A 93 AA2 2 HIS A 271 ? ARG A 282 ? HIS A 256 ARG A 267 AA2 3 ASP A 252 ? TYR A 263 ? ASP A 237 TYR A 248 AA3 1 VAL A 230 ? GLN A 232 ? VAL A 215 GLN A 217 AA3 2 TYR A 195 ? LEU A 199 ? TYR A 180 LEU A 184 AA3 3 VAL A 243 ? SER A 245 ? VAL A 228 SER A 230 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 65 ? N VAL A 50 O LYS A 97 ? O LYS A 82 AA2 1 2 N ILE A 102 ? N ILE A 87 O GLU A 277 ? O GLU A 262 AA2 2 3 O ARG A 274 ? O ARG A 259 N ALA A 262 ? N ALA A 247 AA3 1 2 O TYR A 231 ? O TYR A 216 N VAL A 197 ? N VAL A 182 AA3 2 3 N ALA A 196 ? N ALA A 181 O VAL A 244 ? O VAL A 229 # _atom_sites.entry_id 7S21 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -14 ? ? ? A . n A 1 2 HIS 2 -13 ? ? ? A . n A 1 3 HIS 3 -12 ? ? ? A . n A 1 4 HIS 4 -11 ? ? ? A . n A 1 5 HIS 5 -10 ? ? ? A . n A 1 6 HIS 6 -9 ? ? ? A . n A 1 7 HIS 7 -8 ? ? ? A . n A 1 8 MET 8 -7 ? ? ? A . n A 1 9 PRO 9 -6 ? ? ? A . n A 1 10 LEU 10 -5 ? ? ? A . n A 1 11 GLU 11 -4 ? ? ? A . n A 1 12 PRO 12 -3 ? ? ? A . n A 1 13 HIS 13 -2 ? ? ? A . n A 1 14 PHE 14 -1 ? ? ? A . n A 1 15 MET 15 0 ? ? ? A . n A 1 16 PRO 16 1 1 PRO PRO A . n A 1 17 ASP 17 2 2 ASP ASP A . n A 1 18 PHE 18 3 3 PHE PHE A . n A 1 19 LEU 19 4 4 LEU LEU A . n A 1 20 GLY 20 5 5 GLY GLY A . n A 1 21 HIS 21 6 6 HIS HIS A . n A 1 22 ALA 22 7 7 ALA ALA A . n A 1 23 GLU 23 8 8 GLU GLU A . n A 1 24 ASN 24 9 9 ASN ASN A . n A 1 25 PRO 25 10 10 PRO PRO A . n A 1 26 LEU 26 11 11 LEU LEU A . n A 1 27 ARG 27 12 12 ARG ARG A . n A 1 28 GLU 28 13 13 GLU GLU A . n A 1 29 GLU 29 14 14 GLU GLU A . n A 1 30 GLU 30 15 15 GLU GLU A . n A 1 31 TRP 31 16 16 TRP TRP A . n A 1 32 ALA 32 17 17 ALA ALA A . n A 1 33 ARG 33 18 18 ARG ARG A . n A 1 34 LEU 34 19 19 LEU LEU A . n A 1 35 ASN 35 20 20 ASN ASN A . n A 1 36 GLU 36 21 21 GLU GLU A . n A 1 37 THR 37 22 22 THR THR A . n A 1 38 VAL 38 23 23 VAL VAL A . n A 1 39 ILE 39 24 24 ILE ILE A . n A 1 40 GLN 40 25 25 GLN GLN A . n A 1 41 VAL 41 26 26 VAL VAL A . n A 1 42 ALA 42 27 27 ALA ALA A . n A 1 43 ARG 43 28 28 ARG ARG A . n A 1 44 ARG 44 29 29 ARG ARG A . n A 1 45 SER 45 30 30 SER SER A . n A 1 46 LEU 46 31 31 LEU LEU A . n A 1 47 VAL 47 32 32 VAL VAL A . n A 1 48 GLY 48 33 33 GLY GLY A . n A 1 49 ARG 49 34 34 ARG ARG A . n A 1 50 ARG 50 35 35 ARG ARG A . n A 1 51 ILE 51 36 36 ILE ILE A . n A 1 52 LEU 52 37 37 LEU LEU A . n A 1 53 ASP 53 38 38 ASP ASP A . n A 1 54 ILE 54 39 39 ILE ILE A . n A 1 55 TYR 55 40 40 TYR TYR A . n A 1 56 GLY 56 41 41 GLY GLY A . n A 1 57 PRO 57 42 42 PRO PRO A . n A 1 58 LEU 58 43 43 LEU LEU A . n A 1 59 GLY 59 44 44 GLY GLY A . n A 1 60 ALA 60 45 45 ALA ALA A . n A 1 61 GLY 61 46 46 GLY GLY A . n A 1 62 VAL 62 47 47 VAL VAL A . n A 1 63 GLN 63 48 48 GLN GLN A . n A 1 64 THR 64 49 49 THR THR A . n A 1 65 VAL 65 50 50 VAL VAL A . n A 1 66 PRO 66 51 51 PRO PRO A . n A 1 67 TYR 67 52 52 TYR TYR A . n A 1 68 ASP 68 53 53 ASP ASP A . n A 1 69 GLU 69 54 54 GLU GLU A . n A 1 70 PHE 70 55 55 PHE PHE A . n A 1 71 GLN 71 56 56 GLN GLN A . n A 1 72 GLY 72 57 57 GLY GLY A . n A 1 73 VAL 73 58 58 VAL VAL A . n A 1 74 SER 74 59 ? ? ? A . n A 1 75 PRO 75 60 ? ? ? A . n A 1 76 GLY 76 61 ? ? ? A . n A 1 77 ALA 77 62 ? ? ? A . n A 1 78 VAL 78 63 ? ? ? A . n A 1 79 ASP 79 64 ? ? ? A . n A 1 80 ILE 80 65 ? ? ? A . n A 1 81 VAL 81 66 ? ? ? A . n A 1 82 GLY 82 67 ? ? ? A . n A 1 83 GLU 83 68 ? ? ? A . n A 1 84 GLN 84 69 ? ? ? A . n A 1 85 GLU 85 70 ? ? ? A . n A 1 86 THR 86 71 71 THR THR A . n A 1 87 ALA 87 72 72 ALA ALA A . n A 1 88 MET 88 73 73 MET MET A . n A 1 89 VAL 89 74 74 VAL VAL A . n A 1 90 PHE 90 75 75 PHE PHE A . n A 1 91 THR 91 76 76 THR THR A . n A 1 92 ASP 92 77 77 ASP ASP A . n A 1 93 ALA 93 78 78 ALA ALA A . n A 1 94 ARG 94 79 79 ARG ARG A . n A 1 95 LYS 95 80 80 LYS LYS A . n A 1 96 PHE 96 81 81 PHE PHE A . n A 1 97 LYS 97 82 82 LYS LYS A . n A 1 98 THR 98 83 83 THR THR A . n A 1 99 ILE 99 84 84 ILE ILE A . n A 1 100 PRO 100 85 85 PRO PRO A . n A 1 101 ILE 101 86 86 ILE ILE A . n A 1 102 ILE 102 87 87 ILE ILE A . n A 1 103 TYR 103 88 88 TYR TYR A . n A 1 104 LYS 104 89 89 LYS LYS A . n A 1 105 ASP 105 90 90 ASP ASP A . n A 1 106 PHE 106 91 91 PHE PHE A . n A 1 107 LEU 107 92 92 LEU LEU A . n A 1 108 LEU 108 93 93 LEU LEU A . n A 1 109 HIS 109 94 94 HIS HIS A . n A 1 110 TRP 110 95 95 TRP TRP A . n A 1 111 ARG 111 96 96 ARG ARG A . n A 1 112 ASP 112 97 97 ASP ASP A . n A 1 113 ILE 113 98 98 ILE ILE A . n A 1 114 GLU 114 99 99 GLU GLU A . n A 1 115 ALA 115 100 100 ALA ALA A . n A 1 116 ALA 116 101 101 ALA ALA A . n A 1 117 ARG 117 102 102 ARG ARG A . n A 1 118 THR 118 103 103 THR THR A . n A 1 119 HIS 119 104 104 HIS HIS A . n A 1 120 ASN 120 105 105 ASN ASN A . n A 1 121 MET 121 106 106 MET MET A . n A 1 122 PRO 122 107 107 PRO PRO A . n A 1 123 LEU 123 108 108 LEU LEU A . n A 1 124 ASP 124 109 109 ASP ASP A . n A 1 125 VAL 125 110 110 VAL VAL A . n A 1 126 SER 126 111 111 SER SER A . n A 1 127 ALA 127 112 112 ALA ALA A . n A 1 128 ALA 128 113 113 ALA ALA A . n A 1 129 ALA 129 114 114 ALA ALA A . n A 1 130 GLY 130 115 115 GLY GLY A . n A 1 131 ALA 131 116 116 ALA ALA A . n A 1 132 ALA 132 117 117 ALA ALA A . n A 1 133 ALA 133 118 118 ALA ALA A . n A 1 134 LEU 134 119 119 LEU LEU A . n A 1 135 CYS 135 120 120 CYS CYS A . n A 1 136 ALA 136 121 121 ALA ALA A . n A 1 137 GLN 137 122 122 GLN GLN A . n A 1 138 GLN 138 123 123 GLN GLN A . n A 1 139 GLU 139 124 124 GLU GLU A . n A 1 140 ASP 140 125 125 ASP ASP A . n A 1 141 GLU 141 126 126 GLU GLU A . n A 1 142 LEU 142 127 127 LEU LEU A . n A 1 143 ILE 143 128 128 ILE ILE A . n A 1 144 PHE 144 129 129 PHE PHE A . n A 1 145 TYR 145 130 130 TYR TYR A . n A 1 146 GLY 146 131 131 GLY GLY A . n A 1 147 ASP 147 132 132 ASP ASP A . n A 1 148 ALA 148 133 133 ALA ALA A . n A 1 149 ARG 149 134 134 ARG ARG A . n A 1 150 LEU 150 135 135 LEU LEU A . n A 1 151 GLY 151 136 136 GLY GLY A . n A 1 152 TYR 152 137 137 TYR TYR A . n A 1 153 GLU 153 138 138 GLU GLU A . n A 1 154 GLY 154 139 139 GLY GLY A . n A 1 155 LEU 155 140 140 LEU LEU A . n A 1 156 MET 156 141 141 MET MET A . n A 1 157 THR 157 142 142 THR THR A . n A 1 158 ALA 158 143 143 ALA ALA A . n A 1 159 ASN 159 144 144 ASN ASN A . n A 1 160 GLY 160 145 145 GLY GLY A . n A 1 161 ARG 161 146 146 ARG ARG A . n A 1 162 LEU 162 147 147 LEU LEU A . n A 1 163 THR 163 148 148 THR THR A . n A 1 164 VAL 164 149 149 VAL VAL A . n A 1 165 PRO 165 150 150 PRO PRO A . n A 1 166 LEU 166 151 151 LEU LEU A . n A 1 167 GLY 167 152 152 GLY GLY A . n A 1 168 ASP 168 153 153 ASP ASP A . n A 1 169 TRP 169 154 154 TRP TRP A . n A 1 170 THR 170 155 155 THR THR A . n A 1 171 SER 171 156 156 SER SER A . n A 1 172 PRO 172 157 157 PRO PRO A . n A 1 173 GLY 173 158 158 GLY GLY A . n A 1 174 GLY 174 159 159 GLY GLY A . n A 1 175 GLY 175 160 160 GLY GLY A . n A 1 176 PHE 176 161 161 PHE PHE A . n A 1 177 GLN 177 162 162 GLN GLN A . n A 1 178 ALA 178 163 163 ALA ALA A . n A 1 179 ILE 179 164 164 ILE ILE A . n A 1 180 VAL 180 165 165 VAL VAL A . n A 1 181 GLU 181 166 166 GLU GLU A . n A 1 182 ALA 182 167 167 ALA ALA A . n A 1 183 THR 183 168 168 THR THR A . n A 1 184 ARG 184 169 169 ARG ARG A . n A 1 185 LYS 185 170 170 LYS LYS A . n A 1 186 LEU 186 171 171 LEU LEU A . n A 1 187 ASN 187 172 172 ASN ASN A . n A 1 188 GLU 188 173 173 GLU GLU A . n A 1 189 GLN 189 174 174 GLN GLN A . n A 1 190 GLY 190 175 175 GLY GLY A . n A 1 191 HIS 191 176 176 HIS HIS A . n A 1 192 PHE 192 177 177 PHE PHE A . n A 1 193 GLY 193 178 178 GLY GLY A . n A 1 194 PRO 194 179 179 PRO PRO A . n A 1 195 TYR 195 180 180 TYR TYR A . n A 1 196 ALA 196 181 181 ALA ALA A . n A 1 197 VAL 197 182 182 VAL VAL A . n A 1 198 VAL 198 183 183 VAL VAL A . n A 1 199 LEU 199 184 184 LEU LEU A . n A 1 200 SER 200 185 185 SER SER A . n A 1 201 PRO 201 186 186 PRO PRO A . n A 1 202 ARG 202 187 187 ARG ARG A . n A 1 203 LEU 203 188 188 LEU LEU A . n A 1 204 TYR 204 189 189 TYR TYR A . n A 1 205 SER 205 190 190 SER SER A . n A 1 206 GLN 206 191 191 GLN GLN A . n A 1 207 LEU 207 192 192 LEU LEU A . n A 1 208 HIS 208 193 193 HIS HIS A . n A 1 209 ARG 209 194 194 ARG ARG A . n A 1 210 ILE 210 195 195 ILE ILE A . n A 1 211 TYR 211 196 196 TYR TYR A . n A 1 212 GLU 212 197 197 GLU GLU A . n A 1 213 LYS 213 198 198 LYS LYS A . n A 1 214 THR 214 199 199 THR THR A . n A 1 215 GLY 215 200 200 GLY GLY A . n A 1 216 VAL 216 201 201 VAL VAL A . n A 1 217 LEU 217 202 202 LEU LEU A . n A 1 218 GLU 218 203 203 GLU GLU A . n A 1 219 ILE 219 204 204 ILE ILE A . n A 1 220 GLU 220 205 205 GLU GLU A . n A 1 221 THR 221 206 206 THR THR A . n A 1 222 ILE 222 207 207 ILE ILE A . n A 1 223 ARG 223 208 208 ARG ARG A . n A 1 224 GLN 224 209 209 GLN GLN A . n A 1 225 LEU 225 210 210 LEU LEU A . n A 1 226 ALA 226 211 211 ALA ALA A . n A 1 227 SER 227 212 212 SER SER A . n A 1 228 ASP 228 213 213 ASP ASP A . n A 1 229 GLY 229 214 214 GLY GLY A . n A 1 230 VAL 230 215 215 VAL VAL A . n A 1 231 TYR 231 216 216 TYR TYR A . n A 1 232 GLN 232 217 217 GLN GLN A . n A 1 233 SER 233 218 218 SER SER A . n A 1 234 ASN 234 219 219 ASN ASN A . n A 1 235 ARG 235 220 220 ARG ARG A . n A 1 236 LEU 236 221 221 LEU LEU A . n A 1 237 ARG 237 222 222 ARG ARG A . n A 1 238 GLY 238 223 223 GLY GLY A . n A 1 239 GLU 239 224 224 GLU GLU A . n A 1 240 SER 240 225 225 SER SER A . n A 1 241 GLY 241 226 226 GLY GLY A . n A 1 242 VAL 242 227 227 VAL VAL A . n A 1 243 VAL 243 228 228 VAL VAL A . n A 1 244 VAL 244 229 229 VAL VAL A . n A 1 245 SER 245 230 230 SER SER A . n A 1 246 THR 246 231 231 THR THR A . n A 1 247 GLY 247 232 232 GLY GLY A . n A 1 248 ARG 248 233 233 ARG ARG A . n A 1 249 GLU 249 234 234 GLU GLU A . n A 1 250 ASN 250 235 235 ASN ASN A . n A 1 251 MET 251 236 236 MET MET A . n A 1 252 ASP 252 237 237 ASP ASP A . n A 1 253 LEU 253 238 238 LEU LEU A . n A 1 254 ALA 254 239 239 ALA ALA A . n A 1 255 VAL 255 240 240 VAL VAL A . n A 1 256 SER 256 241 241 SER SER A . n A 1 257 MET 257 242 242 MET MET A . n A 1 258 ASP 258 243 243 ASP ASP A . n A 1 259 MET 259 244 244 MET MET A . n A 1 260 VAL 260 245 245 VAL VAL A . n A 1 261 ALA 261 246 246 ALA ALA A . n A 1 262 ALA 262 247 247 ALA ALA A . n A 1 263 TYR 263 248 248 TYR TYR A . n A 1 264 LEU 264 249 249 LEU LEU A . n A 1 265 GLY 265 250 250 GLY GLY A . n A 1 266 ALA 266 251 251 ALA ALA A . n A 1 267 SER 267 252 252 SER SER A . n A 1 268 ARG 268 253 253 ARG ARG A . n A 1 269 MET 269 254 254 MET MET A . n A 1 270 ASN 270 255 255 ASN ASN A . n A 1 271 HIS 271 256 256 HIS HIS A . n A 1 272 PRO 272 257 257 PRO PRO A . n A 1 273 PHE 273 258 258 PHE PHE A . n A 1 274 ARG 274 259 259 ARG ARG A . n A 1 275 VAL 275 260 260 VAL VAL A . n A 1 276 LEU 276 261 261 LEU LEU A . n A 1 277 GLU 277 262 262 GLU GLU A . n A 1 278 ALA 278 263 263 ALA ALA A . n A 1 279 LEU 279 264 264 LEU LEU A . n A 1 280 LEU 280 265 265 LEU LEU A . n A 1 281 LEU 281 266 266 LEU LEU A . n A 1 282 ARG 282 267 267 ARG ARG A . n A 1 283 ILE 283 268 268 ILE ILE A . n A 1 284 LYS 284 269 269 LYS LYS A . n A 1 285 HIS 285 270 270 HIS HIS A . n A 1 286 PRO 286 271 271 PRO PRO A . n A 1 287 ASP 287 272 272 ASP ASP A . n A 1 288 ALA 288 273 273 ALA ALA A . n A 1 289 ILE 289 274 274 ILE ILE A . n A 1 290 CYS 290 275 275 CYS CYS A . n A 1 291 THR 291 276 276 THR THR A . n A 1 292 LEU 292 277 277 LEU LEU A . n A 1 293 GLU 293 278 ? ? ? A . n A 1 294 GLY 294 279 ? ? ? A . n A 1 295 ALA 295 280 ? ? ? A . n A 1 296 GLY 296 281 ? ? ? A . n A 1 297 ALA 297 282 ? ? ? A . n A 1 298 THR 298 283 ? ? ? A . n A 1 299 GLU 299 284 ? ? ? A . n A 1 300 ARG 300 285 ? ? ? A . n A 1 301 ARG 301 286 ? ? ? A . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-meric 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A 2 1 A 3 '(1-5)' A 4 '(1,2,6,10,23,24)' A 5 P A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -1.00000000 0.00000000 0.00000000 271.36000 0.00000000 -1.00000000 0.00000000 271.36000 0.00000000 0.00000000 1.00000000 -270.30000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.30901699 -0.80901699 -0.50000000 542.19000 0.80901699 0.50000000 -0.30901699 -0.32756 0.50000000 -0.30901699 0.80901699 -0.20244 3 'point symmetry operation' ? ? -0.80901699 -0.50000000 -0.30901699 710.10215 0.50000000 -0.30901699 -0.80901699 438.21215 0.30901699 -0.80901699 0.50000000 270.83000 4 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901699 271.68756 -0.50000000 -0.30901699 -0.80901699 709.57215 -0.30901699 -0.80901699 0.50000000 438.53970 5 'point symmetry operation' ? ? 0.30901699 0.80901699 0.50000000 -167.17970 -0.80901699 0.50000000 -0.30901699 438.74215 -0.50000000 -0.30901699 0.80901699 271.15756 6 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 542.72000 0.00000000 -1.00000000 0.00000000 542.72000 0.00000000 0.00000000 1.00000000 0.00000 7 'point symmetry operation' ? ? -0.30901699 0.80901699 0.50000000 0.53000 -0.80901699 -0.50000000 0.30901699 543.04756 0.50000000 -0.30901699 0.80901699 -0.20244 8 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901699 -167.38215 -0.50000000 0.30901699 0.80901699 104.50785 0.30901699 -0.80901699 0.50000000 270.83000 9 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901699 271.03244 0.50000000 0.30901699 0.80901699 -166.85215 -0.30901699 -0.80901699 0.50000000 438.53970 10 'point symmetry operation' ? ? -0.30901699 -0.80901699 -0.50000000 709.89970 0.80901699 -0.50000000 0.30901699 103.97785 -0.50000000 -0.30901699 0.80901699 271.15756 11 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 542.72000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 540.60000 12 'point symmetry operation' ? ? -0.30901699 0.80901699 0.50000000 0.53000 0.80901699 0.50000000 -0.30901699 -0.32756 -0.50000000 0.30901699 -0.80901699 540.80244 13 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901699 -167.38215 0.50000000 -0.30901699 -0.80901699 438.21215 -0.30901699 0.80901699 -0.50000000 269.77000 14 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901699 271.03244 -0.50000000 -0.30901699 -0.80901699 709.57215 0.30901699 0.80901699 -0.50000000 102.06030 15 'point symmetry operation' ? ? -0.30901699 -0.80901699 -0.50000000 709.89970 -0.80901699 0.50000000 -0.30901699 438.74215 0.50000000 0.30901699 -0.80901699 269.44244 16 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 542.72000 0.00000000 0.00000000 -1.00000000 540.60000 17 'point symmetry operation' ? ? 0.30901699 -0.80901699 -0.50000000 542.19000 -0.80901699 -0.50000000 0.30901699 543.04756 -0.50000000 0.30901699 -0.80901699 540.80244 18 'point symmetry operation' ? ? -0.80901699 -0.50000000 -0.30901699 710.10215 -0.50000000 0.30901699 0.80901699 104.50785 -0.30901699 0.80901699 -0.50000000 269.77000 19 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901699 271.68756 0.50000000 0.30901699 0.80901699 -166.85215 0.30901699 0.80901699 -0.50000000 102.06030 20 'point symmetry operation' ? ? 0.30901699 0.80901699 0.50000000 -167.17970 0.80901699 -0.50000000 0.30901699 103.97785 0.50000000 0.30901699 -0.80901699 269.44244 21 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 541.66000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 541.66000 22 'point symmetry operation' ? ? -0.50000000 0.30901699 -0.80901699 541.86244 0.30901699 -0.80901699 -0.50000000 542.19000 -0.80901699 -0.50000000 0.30901699 541.98756 23 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.50000000 270.83000 -0.80901699 -0.50000000 -0.30901699 710.10215 -0.50000000 0.30901699 0.80901699 103.44785 24 'point symmetry operation' ? ? 0.30901699 0.80901699 -0.50000000 103.12030 -0.80901699 0.50000000 0.30901699 271.68756 0.50000000 0.30901699 0.80901699 -167.91215 25 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901699 270.50244 0.30901699 0.80901699 0.50000000 -167.17970 0.80901699 -0.50000000 0.30901699 102.91785 26 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 541.66000 -1.00000000 0.00000000 0.00000000 542.72000 0.00000000 1.00000000 0.00000000 -1.06000 27 'point symmetry operation' ? ? -0.50000000 0.30901699 -0.80901699 541.86244 -0.30901699 0.80901699 0.50000000 0.53000 0.80901699 0.50000000 -0.30901699 -1.38756 28 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.50000000 270.83000 0.80901699 0.50000000 0.30901699 -167.38215 0.50000000 -0.30901699 -0.80901699 437.15215 29 'point symmetry operation' ? ? 0.30901699 0.80901699 -0.50000000 103.12030 0.80901699 -0.50000000 -0.30901699 271.03244 -0.50000000 -0.30901699 -0.80901699 708.51215 30 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901699 270.50244 -0.30901699 -0.80901699 -0.50000000 709.89970 -0.80901699 0.50000000 -0.30901699 437.68215 31 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 1.06000 -1.00000000 0.00000000 0.00000000 542.72000 0.00000000 -1.00000000 0.00000000 541.66000 32 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901699 0.85756 -0.30901699 0.80901699 0.50000000 0.53000 -0.80901699 -0.50000000 0.30901699 541.98756 33 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.50000000 271.89000 0.80901699 0.50000000 0.30901699 -167.38215 -0.50000000 0.30901699 0.80901699 103.44785 34 'point symmetry operation' ? ? -0.30901699 -0.80901699 0.50000000 439.59970 0.80901699 -0.50000000 -0.30901699 271.03244 0.50000000 0.30901699 0.80901699 -167.91215 35 'point symmetry operation' ? ? -0.50000000 -0.30901699 0.80901699 272.21756 -0.30901699 -0.80901699 -0.50000000 709.89970 0.80901699 -0.50000000 0.30901699 102.91785 36 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 1.06000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 -1.06000 37 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901699 0.85756 0.30901699 -0.80901699 -0.50000000 542.19000 0.80901699 0.50000000 -0.30901699 -1.38756 38 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.50000000 271.89000 -0.80901699 -0.50000000 -0.30901699 710.10215 0.50000000 -0.30901699 -0.80901699 437.15215 39 'point symmetry operation' ? ? -0.30901699 -0.80901699 0.50000000 439.59970 -0.80901699 0.50000000 0.30901699 271.68756 -0.50000000 -0.30901699 -0.80901699 708.51215 40 'point symmetry operation' ? ? -0.50000000 -0.30901699 0.80901699 272.21756 0.30901699 0.80901699 0.50000000 -167.17970 -0.80901699 0.50000000 -0.30901699 437.68215 41 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 541.66000 -1.00000000 0.00000000 0.00000000 541.66000 42 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901699 -0.32756 -0.50000000 0.30901699 -0.80901699 541.86244 -0.30901699 0.80901699 0.50000000 -0.53000 43 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901699 438.21215 -0.30901699 0.80901699 -0.50000000 270.83000 0.80901699 0.50000000 0.30901699 -168.44215 44 'point symmetry operation' ? ? -0.50000000 -0.30901699 -0.80901699 709.57215 0.30901699 0.80901699 -0.50000000 103.12030 0.80901699 -0.50000000 -0.30901699 269.97244 45 'point symmetry operation' ? ? -0.80901699 0.50000000 -0.30901699 438.74215 0.50000000 0.30901699 -0.80901699 270.50244 -0.30901699 -0.80901699 -0.50000000 708.83970 46 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 542.72000 0.00000000 0.00000000 -1.00000000 541.66000 1.00000000 0.00000000 0.00000000 -1.06000 47 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901699 543.04756 -0.50000000 0.30901699 -0.80901699 541.86244 0.30901699 -0.80901699 -0.50000000 541.13000 48 'point symmetry operation' ? ? -0.50000000 0.30901699 0.80901699 104.50785 -0.30901699 0.80901699 -0.50000000 270.83000 -0.80901699 -0.50000000 -0.30901699 709.04215 49 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901699 -166.85215 0.30901699 0.80901699 -0.50000000 103.12030 -0.80901699 0.50000000 0.30901699 270.62756 50 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901699 103.97785 0.50000000 0.30901699 -0.80901699 270.50244 0.30901699 0.80901699 0.50000000 -168.23970 51 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 1.06000 1.00000000 0.00000000 0.00000000 -1.06000 52 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901699 -0.32756 0.50000000 -0.30901699 0.80901699 0.85756 0.30901699 -0.80901699 -0.50000000 541.13000 53 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901699 438.21215 0.30901699 -0.80901699 0.50000000 271.89000 -0.80901699 -0.50000000 -0.30901699 709.04215 54 'point symmetry operation' ? ? -0.50000000 -0.30901699 -0.80901699 709.57215 -0.30901699 -0.80901699 0.50000000 439.59970 -0.80901699 0.50000000 0.30901699 270.62756 55 'point symmetry operation' ? ? -0.80901699 0.50000000 -0.30901699 438.74215 -0.50000000 -0.30901699 0.80901699 272.21756 0.30901699 0.80901699 0.50000000 -168.23970 56 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 542.72000 0.00000000 0.00000000 1.00000000 1.06000 -1.00000000 0.00000000 0.00000000 541.66000 57 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901699 543.04756 0.50000000 -0.30901699 0.80901699 0.85756 -0.30901699 0.80901699 0.50000000 -0.53000 58 'point symmetry operation' ? ? -0.50000000 0.30901699 0.80901699 104.50785 0.30901699 -0.80901699 0.50000000 271.89000 0.80901699 0.50000000 0.30901699 -168.44215 59 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901699 -166.85215 -0.30901699 -0.80901699 0.50000000 439.59970 0.80901699 -0.50000000 -0.30901699 269.97244 60 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901699 103.97785 -0.50000000 -0.30901699 0.80901699 272.21756 -0.30901699 -0.80901699 -0.50000000 708.83970 # _pdbx_point_symmetry.entry_id 7S21 _pdbx_point_symmetry.Schoenflies_symbol I # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-02 2 'Structure model' 1 1 2022-02-23 3 'Structure model' 1 2 2022-04-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 3 'Structure model' '_citation.title' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.18.2_3874: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 7S21 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7S21 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 5183 _em_3d_reconstruction.resolution 3.4 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details '20 mM HEPES, pH 7.3, 150 mM NaCl' _em_buffer.pH 7.3 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'EncA with T=1 symmetry' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7S21 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277.15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 95 _em_vitrification.instrument 'LEICA EM GP' _em_vitrification.entry_id 7S21 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7S21 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7S21 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 2 ? ? 72.16 -9.47 2 1 LEU A 4 ? ? -90.73 49.95 3 1 ALA A 7 ? ? -159.13 -154.92 4 1 GLU A 8 ? ? 68.60 72.81 5 1 ASN A 9 ? ? 63.63 74.84 6 1 ARG A 79 ? ? -81.86 -73.10 7 1 LYS A 80 ? ? 174.14 160.32 8 1 HIS A 104 ? ? -77.92 -157.47 9 1 ASN A 105 ? ? -33.40 119.34 10 1 ALA A 133 ? ? 68.71 -4.76 11 1 GLU A 197 ? ? 71.82 -11.87 12 1 LYS A 198 ? ? -123.58 -71.40 13 1 THR A 199 ? ? -128.57 -56.86 14 1 GLU A 203 ? ? -82.14 48.49 15 1 SER A 212 ? ? 68.62 -3.67 16 1 ARG A 222 ? ? -78.87 -165.46 17 1 GLU A 234 ? ? 70.65 -7.14 18 1 MET A 254 ? ? 78.38 -2.62 19 1 HIS A 270 ? ? -159.20 86.91 20 1 PRO A 271 ? ? -76.90 45.40 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 14 ? CG ? A GLU 29 CG 2 1 Y 1 A GLU 14 ? CD ? A GLU 29 CD 3 1 Y 1 A GLU 14 ? OE1 ? A GLU 29 OE1 4 1 Y 1 A GLU 14 ? OE2 ? A GLU 29 OE2 5 1 Y 1 A HIS 94 ? CG ? A HIS 109 CG 6 1 Y 1 A HIS 94 ? ND1 ? A HIS 109 ND1 7 1 Y 1 A HIS 94 ? CD2 ? A HIS 109 CD2 8 1 Y 1 A HIS 94 ? CE1 ? A HIS 109 CE1 9 1 Y 1 A HIS 94 ? NE2 ? A HIS 109 NE2 10 1 Y 1 A LEU 151 ? CG ? A LEU 166 CG 11 1 Y 1 A LEU 151 ? CD1 ? A LEU 166 CD1 12 1 Y 1 A LEU 151 ? CD2 ? A LEU 166 CD2 13 1 Y 1 A ARG 194 ? CG ? A ARG 209 CG 14 1 Y 1 A ARG 194 ? CD ? A ARG 209 CD 15 1 Y 1 A ARG 194 ? NE ? A ARG 209 NE 16 1 Y 1 A ARG 194 ? CZ ? A ARG 209 CZ 17 1 Y 1 A ARG 194 ? NH1 ? A ARG 209 NH1 18 1 Y 1 A ARG 194 ? NH2 ? A ARG 209 NH2 19 1 Y 1 A GLU 197 ? CG ? A GLU 212 CG 20 1 Y 1 A GLU 197 ? CD ? A GLU 212 CD 21 1 Y 1 A GLU 197 ? OE1 ? A GLU 212 OE1 22 1 Y 1 A GLU 197 ? OE2 ? A GLU 212 OE2 23 1 Y 1 A LYS 198 ? CG ? A LYS 213 CG 24 1 Y 1 A LYS 198 ? CD ? A LYS 213 CD 25 1 Y 1 A LYS 198 ? CE ? A LYS 213 CE 26 1 Y 1 A LYS 198 ? NZ ? A LYS 213 NZ 27 1 Y 1 A GLN 209 ? CG ? A GLN 224 CG 28 1 Y 1 A GLN 209 ? CD ? A GLN 224 CD 29 1 Y 1 A GLN 209 ? OE1 ? A GLN 224 OE1 30 1 Y 1 A GLN 209 ? NE2 ? A GLN 224 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -14 ? A MET 1 2 1 Y 1 A HIS -13 ? A HIS 2 3 1 Y 1 A HIS -12 ? A HIS 3 4 1 Y 1 A HIS -11 ? A HIS 4 5 1 Y 1 A HIS -10 ? A HIS 5 6 1 Y 1 A HIS -9 ? A HIS 6 7 1 Y 1 A HIS -8 ? A HIS 7 8 1 Y 1 A MET -7 ? A MET 8 9 1 Y 1 A PRO -6 ? A PRO 9 10 1 Y 1 A LEU -5 ? A LEU 10 11 1 Y 1 A GLU -4 ? A GLU 11 12 1 Y 1 A PRO -3 ? A PRO 12 13 1 Y 1 A HIS -2 ? A HIS 13 14 1 Y 1 A PHE -1 ? A PHE 14 15 1 Y 1 A MET 0 ? A MET 15 16 1 Y 1 A SER 59 ? A SER 74 17 1 Y 1 A PRO 60 ? A PRO 75 18 1 Y 1 A GLY 61 ? A GLY 76 19 1 Y 1 A ALA 62 ? A ALA 77 20 1 Y 1 A VAL 63 ? A VAL 78 21 1 Y 1 A ASP 64 ? A ASP 79 22 1 Y 1 A ILE 65 ? A ILE 80 23 1 Y 1 A VAL 66 ? A VAL 81 24 1 Y 1 A GLY 67 ? A GLY 82 25 1 Y 1 A GLU 68 ? A GLU 83 26 1 Y 1 A GLN 69 ? A GLN 84 27 1 Y 1 A GLU 70 ? A GLU 85 28 1 Y 1 A GLU 278 ? A GLU 293 29 1 Y 1 A GLY 279 ? A GLY 294 30 1 Y 1 A ALA 280 ? A ALA 295 31 1 Y 1 A GLY 281 ? A GLY 296 32 1 Y 1 A ALA 282 ? A ALA 297 33 1 Y 1 A THR 283 ? A THR 298 34 1 Y 1 A GLU 284 ? A GLU 299 35 1 Y 1 A ARG 285 ? A ARG 300 36 1 Y 1 A ARG 286 ? A ARG 301 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 34 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Myxococcus xanthus' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 66 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? ? ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.5 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #