data_7SXB # _entry.id 7SXB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7SXB pdb_00007sxb 10.2210/pdb7sxb/pdb WWPDB D_1000259961 ? ? BMRB 51083 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 51083 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7SXB _pdbx_database_status.recvd_initial_deposition_date 2021-11-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mukundan, A.' 1 ? 'Byeon, C.' 2 ? 'Hinck, A.P.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 298 _citation.language ? _citation.page_first 101994 _citation.page_last 101994 _citation.title ;Convergent evolution of a parasite-encoded complement control protein-scaffold to mimic binding of mammalian TGF-beta to its receptors, T beta RI and T beta RII. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jbc.2022.101994 _citation.pdbx_database_id_PubMed 35500648 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mukundan, A.' 1 ? primary 'Byeon, C.H.' 2 ? primary 'Hinck, C.S.' 3 ? primary 'Cunningham, K.' 4 ? primary 'Campion, T.' 5 ? primary 'Smyth, D.J.' 6 ? primary 'Maizels, R.M.' 7 ? primary 'Hinck, A.P.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Transforming growth factor mimic' _entity.formula_weight 9817.747 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSGTGCPPLPDDGIVFYEYYGYAGDRHTVGPVVTKDSSGNYPSPTHARRRCRALSQEADPGEFVAICYKSGTTGESHWEY YKNIGKCPDP ; _entity_poly.pdbx_seq_one_letter_code_can ;GSGTGCPPLPDDGIVFYEYYGYAGDRHTVGPVVTKDSSGNYPSPTHARRRCRALSQEADPGEFVAICYKSGTTGESHWEY YKNIGKCPDP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLY n 1 4 THR n 1 5 GLY n 1 6 CYS n 1 7 PRO n 1 8 PRO n 1 9 LEU n 1 10 PRO n 1 11 ASP n 1 12 ASP n 1 13 GLY n 1 14 ILE n 1 15 VAL n 1 16 PHE n 1 17 TYR n 1 18 GLU n 1 19 TYR n 1 20 TYR n 1 21 GLY n 1 22 TYR n 1 23 ALA n 1 24 GLY n 1 25 ASP n 1 26 ARG n 1 27 HIS n 1 28 THR n 1 29 VAL n 1 30 GLY n 1 31 PRO n 1 32 VAL n 1 33 VAL n 1 34 THR n 1 35 LYS n 1 36 ASP n 1 37 SER n 1 38 SER n 1 39 GLY n 1 40 ASN n 1 41 TYR n 1 42 PRO n 1 43 SER n 1 44 PRO n 1 45 THR n 1 46 HIS n 1 47 ALA n 1 48 ARG n 1 49 ARG n 1 50 ARG n 1 51 CYS n 1 52 ARG n 1 53 ALA n 1 54 LEU n 1 55 SER n 1 56 GLN n 1 57 GLU n 1 58 ALA n 1 59 ASP n 1 60 PRO n 1 61 GLY n 1 62 GLU n 1 63 PHE n 1 64 VAL n 1 65 ALA n 1 66 ILE n 1 67 CYS n 1 68 TYR n 1 69 LYS n 1 70 SER n 1 71 GLY n 1 72 THR n 1 73 THR n 1 74 GLY n 1 75 GLU n 1 76 SER n 1 77 HIS n 1 78 TRP n 1 79 GLU n 1 80 TYR n 1 81 TYR n 1 82 LYS n 1 83 ASN n 1 84 ILE n 1 85 GLY n 1 86 LYS n 1 87 CYS n 1 88 PRO n 1 89 ASP n 1 90 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 90 _entity_src_gen.gene_src_common_name 'Parasitic nematode' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Heligmosomoides polygyrus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6339 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pet32b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A2D1LW19_HELBK _struct_ref.pdbx_db_accession A0A2D1LW19 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GCPPLPDDGIVFYEYYGYAGDRHTVGPVVTKDSSGNYPSPTHARRRCRALSQEADPGEFVAICYKSGTTGESHWEYYKNI GKCPDP ; _struct_ref.pdbx_align_begin 177 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7SXB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 90 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A2D1LW19 _struct_ref_seq.db_align_beg 177 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 262 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 90 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7SXB GLY A 1 ? UNP A0A2D1LW19 ? ? 'expression tag' 1 1 1 7SXB SER A 2 ? UNP A0A2D1LW19 ? ? 'expression tag' 2 2 1 7SXB GLY A 3 ? UNP A0A2D1LW19 ? ? 'expression tag' 3 3 1 7SXB THR A 4 ? UNP A0A2D1LW19 ? ? 'expression tag' 4 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '3D HNHB' 2 isotropic 3 1 1 '3D HCCH-TOCSY' 2 isotropic 4 1 1 '2D 1H-13C HSQC' 2 isotropic 12 1 1 '3D HN(CO)CA' 4 isotropic 5 2 2 '3D HN(CO)CA' 4 anisotropic 6 1 1 '3D HBHA(CO)NH' 2 isotropic 7 1 1 '3D HNCO' 1 isotropic 26 2 2 '3D HNCO' 1 anisotropic 8 1 1 '3D HN(CA)CO' 1 isotropic 9 1 1 '2D CB(CGCDCD)HD' 1 isotropic 10 1 3 '1H 13C HSQC-TOCSY' 1 isotropic 11 1 3 '3D 1H-13C NOESY aliphatic' 3 isotropic 13 1 3 '3D 1H-15N NOESY' 3 isotropic 14 1 1 '2D CB(CGCDCD)HE' 1 isotropic 15 1 1 '3D HNCACB' 1 isotropic 16 1 1 '3D H(CCO)NH' 2 isotropic 17 1 3 '3D 1H-13C NOESY aromatic' 3 isotropic 18 1 1 '3D C(CO)NH' 1 isotropic 19 1 4 '3D 1H-15N NOESY' 1 isotropic 20 1 1 '3D HCA(CO)N' 1 isotropic 21 1 1 '2D 1H-13C HSQC' 1 isotropic 22 1 1 '3D CBCA(CO)NH' 1 isotropic 23 1 1 '2D 1H-15N HSQC IPAP' 1 isotropic 24 2 2 '2D 1H-15N HSQC IPAP' 1 anisotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 310 ? ambient 6.0 '25mM Na2HPO4, 50mM NaCl' '25mM Na2HPO4 50mM NaCl pH 6.0 310K' ? M 'phosphate pH 6.0' ? pH ? ? K 2 310 ? ambient 6.0 '25mM Na2HPO4, 50mM NaCl' ;25mM Na2HPO4 50mM NaCl pH 6.0 310K 10mg/mL Pf1 phage ; ? M aligned ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '250 uM [U-100% 13C; U-100% 15N] TGM-1 D3, 95% H2O/5% D2O' '95% H2O/5% D2O' '13C 15N labeled TGM-1 D3' solution ? 2 '250 uM [U-100% 13C; U-100% 15N] TGM-1 D3, 10mg/mL pf1 phage, 95% H2O/5% D2O' '10mg/mL pf1 phage, 95% H2O/5% D2O' '13C 15N labeled TGM-1 D3 Aligned' 'filamentous virus' '13C 15N labeled TGM-1 D3 Aligned with phage 10mg/mL' 3 '250 uM [U-100% 13C; U-100% 15N; U-80% 2H] TGM-1 D3, 95% H2O/5% D2O' '95% H2O/5% D2O' '13C 15N deuterated TGM-1 D3' solution ? 4 '250 uM [U-100% 15N; U-80% 2H] TGM-1 D3, 95% H2O/5% D2O' '95% H2O/5% D2O' '15N deuterated TGM-1 D3' solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 600 ? 2 AVANCE ? Bruker 700 ? 3 AVANCE ? Bruker 800 ? 4 AVANCE ? Bruker 900 ? # _pdbx_nmr_refine.entry_id 7SXB _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 7SXB _pdbx_nmr_ensemble.conformers_calculated_total_number 500 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7SXB _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 2 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' 'CcpNmr Analysis' ? CCPN 4 'chemical shift assignment' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL' 5 'chemical shift assignment' I-PINE ? 'Lee, Bahrami, Dashti, Eghbalnia, Tonelli, Westler and Markley' 6 'peak picking' 'CcpNmr Analysis' ? CCPN 7 'peak picking' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL' 8 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 9 collection TopSpin ? 'Bruker Biospin' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7SXB _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7SXB _struct.title 'NMR Solution Structure for Domain 3 of Heligmosomoides polygyrus protein Transforming Growth Factor Beta Mimic 1 (TGM-1 D3)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7SXB _struct_keywords.text 'CCP domain, TGF-beta, TbRII-binding domain, IMMUNOSUPPRESSANT' _struct_keywords.pdbx_keywords IMMUNOSUPPRESSANT # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 67 SG ? ? A CYS 6 A CYS 67 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf2 disulf ? ? A CYS 51 SG ? ? ? 1_555 A CYS 87 SG ? ? A CYS 51 A CYS 87 1_555 ? ? ? ? ? ? ? 2.022 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 15 ? PHE A 16 ? VAL A 15 PHE A 16 AA1 2 THR A 45 ? CYS A 51 ? THR A 45 CYS A 51 AA1 3 TYR A 19 ? GLY A 21 ? TYR A 19 GLY A 21 AA2 1 VAL A 15 ? PHE A 16 ? VAL A 15 PHE A 16 AA2 2 THR A 45 ? CYS A 51 ? THR A 45 CYS A 51 AA2 3 GLU A 62 ? LYS A 69 ? GLU A 62 LYS A 69 AA2 4 SER A 76 ? TYR A 80 ? SER A 76 TYR A 80 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 16 ? N PHE A 16 O ARG A 50 ? O ARG A 50 AA1 2 3 O HIS A 46 ? O HIS A 46 N TYR A 20 ? N TYR A 20 AA2 1 2 N PHE A 16 ? N PHE A 16 O ARG A 50 ? O ARG A 50 AA2 2 3 N THR A 45 ? N THR A 45 O CYS A 67 ? O CYS A 67 AA2 3 4 N ILE A 66 ? N ILE A 66 O GLU A 79 ? O GLU A 79 # _atom_sites.entry_id 7SXB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 TYR 22 22 22 TYR TYR A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 HIS 46 46 46 HIS HIS A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 HIS 77 77 77 HIS HIS A . n A 1 78 TRP 78 78 78 TRP TRP A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 CYS 87 87 87 CYS CYS A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 PRO 90 90 90 PRO PRO A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email ahinck@pitt.edu _pdbx_contact_author.name_first Andrew _pdbx_contact_author.name_last Hinck _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3320-8054 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-05-18 2 'Structure model' 1 1 2022-06-15 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'TGM-1 D3' 250 ? uM '[U-100% 13C; U-100% 15N]' 2 'TGM-1 D3' 250 ? uM '[U-100% 13C; U-100% 15N]' 3 'TGM-1 D3' 250 ? uM '[U-100% 13C; U-100% 15N; U-80% 2H]' 4 'TGM-1 D3' 250 ? uM '[U-100% 15N; U-80% 2H]' 5 'TGM-1 D3' 250 ? uM 'natural abundance' # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 5 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 PRO _pdbx_validate_rmsd_angle.auth_seq_id_1 44 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 44 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 THR _pdbx_validate_rmsd_angle.auth_seq_id_3 45 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 103.19 _pdbx_validate_rmsd_angle.angle_target_value 117.20 _pdbx_validate_rmsd_angle.angle_deviation -14.01 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.20 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 4 ? ? 39.15 -99.69 2 1 LEU A 9 ? ? 74.99 99.06 3 1 HIS A 27 ? ? 55.39 5.07 4 1 LYS A 35 ? ? 105.33 158.91 5 1 ASP A 36 ? ? -120.56 -165.16 6 2 THR A 4 ? ? -102.18 -157.26 7 2 PRO A 7 ? ? -54.74 -179.22 8 2 LEU A 9 ? ? 98.82 -54.66 9 2 ASP A 11 ? ? 160.71 56.83 10 2 ILE A 14 ? ? -142.31 -43.83 11 2 ASP A 25 ? ? 40.35 100.99 12 2 ARG A 26 ? ? -179.99 47.54 13 2 LYS A 35 ? ? 154.49 134.82 14 2 ILE A 84 ? ? -150.51 79.94 15 3 SER A 2 ? ? 63.48 116.30 16 3 THR A 4 ? ? 39.78 30.26 17 3 PRO A 8 ? ? -68.67 2.50 18 3 LEU A 9 ? ? 70.00 108.95 19 3 ILE A 14 ? ? -134.46 -39.93 20 3 ASP A 25 ? ? 108.18 -153.73 21 3 ARG A 26 ? ? 21.00 68.88 22 3 VAL A 29 ? ? 26.00 104.92 23 3 ASN A 40 ? ? -111.18 71.86 24 3 ALA A 53 ? ? 100.42 -19.30 25 4 THR A 4 ? ? -87.63 -86.57 26 4 LEU A 9 ? ? 73.48 97.82 27 4 ILE A 14 ? ? -135.36 -40.61 28 4 HIS A 27 ? ? 45.02 1.01 29 4 LYS A 35 ? ? 109.42 157.42 30 4 ASP A 36 ? ? -120.60 -165.71 31 4 LYS A 82 ? ? 58.56 17.07 32 4 ASN A 83 ? ? 56.70 19.69 33 4 ILE A 84 ? ? 36.95 119.05 34 5 SER A 2 ? ? 62.89 117.72 35 5 THR A 4 ? ? 37.74 -126.14 36 5 CYS A 6 ? ? 77.81 71.95 37 5 PRO A 7 ? ? -49.01 176.47 38 5 LEU A 9 ? ? 67.19 126.75 39 5 ILE A 14 ? ? -131.03 -43.69 40 5 HIS A 27 ? ? 43.94 2.01 41 5 LYS A 35 ? ? 115.72 155.84 42 5 ASP A 36 ? ? -120.13 -169.77 43 5 ASN A 40 ? ? 61.49 144.73 44 5 PRO A 44 ? ? -28.36 106.95 45 5 ILE A 84 ? ? 36.55 -140.61 46 6 SER A 2 ? ? 46.93 -123.84 47 6 LEU A 9 ? ? 36.55 48.55 48 6 ASP A 11 ? ? 53.64 120.06 49 6 ILE A 14 ? ? -146.57 -47.27 50 6 HIS A 27 ? ? 50.35 -11.16 51 6 LYS A 35 ? ? 150.37 155.74 52 6 ASN A 40 ? ? 62.64 145.95 53 6 PRO A 44 ? ? -33.58 102.10 54 6 ALA A 53 ? ? 63.05 -21.09 55 6 LEU A 54 ? ? 55.93 166.23 56 6 ASP A 89 ? ? 61.53 64.32 57 7 THR A 4 ? ? 38.57 -99.44 58 7 LEU A 9 ? ? 82.23 100.12 59 7 ILE A 14 ? ? -133.64 -40.79 60 7 HIS A 27 ? ? 48.56 7.54 61 7 ASN A 40 ? ? -110.71 66.01 62 7 LYS A 82 ? ? -177.68 -8.96 63 8 THR A 4 ? ? 43.49 97.41 64 8 PRO A 7 ? ? -49.90 172.08 65 8 LEU A 9 ? ? 60.93 68.92 66 8 ILE A 14 ? ? -138.41 -46.26 67 8 ASP A 25 ? ? 102.19 105.15 68 8 ARG A 26 ? ? 64.69 126.69 69 8 HIS A 27 ? ? -80.35 45.28 70 8 VAL A 29 ? ? 31.40 56.65 71 8 ASN A 40 ? ? -105.76 71.01 72 8 ARG A 52 ? ? 38.51 35.85 73 8 ALA A 53 ? ? 60.70 -19.32 74 8 LEU A 54 ? ? 47.32 178.05 75 9 THR A 4 ? ? 93.27 -31.69 76 9 PRO A 7 ? ? -52.87 -178.71 77 9 LEU A 9 ? ? 112.51 120.36 78 9 ILE A 14 ? ? -133.70 -44.69 79 9 ASP A 25 ? ? -162.18 77.93 80 9 HIS A 27 ? ? 57.97 14.37 81 9 VAL A 29 ? ? 13.54 110.96 82 9 ALA A 53 ? ? 101.26 -18.44 83 10 THR A 4 ? ? 138.13 105.96 84 10 LEU A 9 ? ? 33.18 48.99 85 10 ASP A 11 ? ? 54.64 118.09 86 10 ILE A 14 ? ? -139.67 -43.37 87 10 LYS A 35 ? ? 153.58 154.30 88 10 ASN A 40 ? ? 61.65 147.04 89 10 PRO A 44 ? ? -35.81 102.12 90 10 LEU A 54 ? ? 71.96 150.37 91 10 ALA A 58 ? ? 97.21 -114.42 92 10 LYS A 82 ? ? 24.38 79.96 93 10 ILE A 84 ? ? 61.94 133.31 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 5 SER A 43 ? ? 11.67 2 6 SER A 43 ? ? 11.30 3 10 SER A 43 ? ? 11.26 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM58670 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' AI153915 2 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' AI157069 3 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #