data_7TDC # _entry.id 7TDC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7TDC pdb_00007tdc 10.2210/pdb7tdc/pdb WWPDB D_1000262088 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7TDC _pdbx_database_status.recvd_initial_deposition_date 2021-12-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nuthanakanti, A.' 1 0000-0003-0105-3430 'Serganov, A.' 2 0000-0001-8328-9310 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1554-8937 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 17 _citation.language ? _citation.page_first 438 _citation.page_last 448 _citation.title 'Subsite Ligand Recognition and Cooperativity in the TPP Riboswitch: Implications for Fragment-Linking in RNA Ligand Discovery.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acschembio.1c00880 _citation.pdbx_database_id_PubMed 35060698 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zeller, M.J.' 1 ? primary 'Nuthanakanti, A.' 2 ? primary 'Li, K.' 3 ? primary 'Aube, J.' 4 ? primary 'Serganov, A.' 5 ? primary 'Weeks, K.M.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 7TDC _cell.details ? _cell.formula_units_Z ? _cell.length_a 65.006 _cell.length_a_esd ? _cell.length_b 65.006 _cell.length_b_esd ? _cell.length_c 101.274 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7TDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'thiM riboswitch RNA (83-MER)' 26860.900 1 ? ? ? ? 2 non-polymer syn '[2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-5-yl]ethoxy-oxidanyl-phosphoryl]methylphosphonic acid' 423.342 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 5 water nat water 18.015 14 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GC(A23) ; _entity_poly.pdbx_seq_one_letter_code_can ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 A n 1 5 C n 1 6 U n 1 7 C n 1 8 G n 1 9 G n 1 10 G n 1 11 G n 1 12 U n 1 13 G n 1 14 C n 1 15 C n 1 16 C n 1 17 U n 1 18 U n 1 19 C n 1 20 U n 1 21 G n 1 22 C n 1 23 G n 1 24 U n 1 25 G n 1 26 A n 1 27 A n 1 28 G n 1 29 G n 1 30 C n 1 31 U n 1 32 G n 1 33 A n 1 34 G n 1 35 A n 1 36 A n 1 37 A n 1 38 U n 1 39 A n 1 40 C n 1 41 C n 1 42 C n 1 43 G n 1 44 U n 1 45 A n 1 46 U n 1 47 C n 1 48 A n 1 49 C n 1 50 C n 1 51 U n 1 52 G n 1 53 A n 1 54 U n 1 55 C n 1 56 U n 1 57 G n 1 58 G n 1 59 A n 1 60 U n 1 61 A n 1 62 A n 1 63 U n 1 64 G n 1 65 C n 1 66 C n 1 67 A n 1 68 G n 1 69 C n 1 70 G n 1 71 U n 1 72 A n 1 73 G n 1 74 G n 1 75 G n 1 76 A n 1 77 A n 1 78 G n 1 79 U n 1 80 C n 1 81 G n 1 82 C n 1 83 A23 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 83 _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7TDC _struct_ref.pdbx_db_accession 7TDC _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7TDC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 83 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7TDC _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 91 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 9 _struct_ref_seq.pdbx_auth_seq_align_end 91 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A23 'RNA linking' n ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O9 P2' 409.186 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GMI non-polymer . '[2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-5-yl]ethoxy-oxidanyl-phosphoryl]methylphosphonic acid' ? 'C13 H21 N4 O6 P2 S 1' 423.342 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7TDC _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;RNA (0.15 mM) was incubated in a buffer containing 5 mM Tris-HCl, pH 8.0, 3 mM MgCl2, 10 mM NaCl, 0.1 M KCl, and 0.5 mM spermine with 0.75 mM TPPc. Reservoir solution was 50 mM sodium cacodylate, pH 6.0, 0.3 M NH4Cl, 10 mm CaCl2, and 30% (v/v) PEG2000 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-03-21 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 84.79 _reflns.entry_id 7TDC _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.460 _reflns.d_resolution_low 56.300 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9133 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.80 _reflns.pdbx_Rmerge_I_obs 0.09800 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.9000 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.46 _reflns_shell.d_res_low 2.56 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.700 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1026 _reflns_shell.percent_possible_all 99.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 3.73000 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 12.90 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 93.15 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7TDC _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.46 _refine.ls_d_res_low 56.30 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9133 _refine.ls_number_reflns_R_free 1681 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.1 _refine.ls_percent_reflns_R_free 9.850 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.215 _refine.ls_R_factor_R_free 0.247 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.211 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 2HOJ _refine.pdbx_stereochemistry_target_values 'GEOSTD + MONOMER LIBRARY + CDL V1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 40.444 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.521 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.46 _refine_hist.d_res_low 56.30 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 1709 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1664 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 1900 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.116 ? 2951 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 18.315 ? 938 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.053 ? 384 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 78 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.4600 2.5300 . . 107 1096 83.00 . . . 0.4801 . 0.4494 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5300 2.6100 . . 146 1313 99.00 . . . 0.5104 . 0.4540 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6100 2.7100 . . 146 1290 100.00 . . . 0.4184 . 0.4285 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7100 2.8200 . . 139 1314 100.00 . . . 0.3706 . 0.3649 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8200 2.9400 . . 130 1301 100.00 . . . 0.4141 . 0.3434 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9400 3.1000 . . 154 1291 100.00 . . . 0.2754 . 0.2749 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1000 3.2900 . . 143 1292 99.00 . . . 0.3148 . 0.2664 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2900 3.5500 . . 148 1280 99.00 . . . 0.2636 . 0.2111 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5500 3.9000 . . 145 1292 99.00 . . . 0.2377 . 0.2014 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.9100 4.4700 . . 145 1289 100.00 . . . 0.2031 . 0.2084 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.4700 5.6300 . . 140 1318 100.00 . . . 0.2133 . 0.1796 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.6400 56.3000 . . 138 1315 100.00 . . . 0.2084 . 0.1581 . . . . . . . . . . . # _struct.entry_id 7TDC _struct.title 'Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7TDC _struct_keywords.text RNA _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 82 "O3'" ? ? ? 1_555 A A23 83 P ? ? A C 90 A A23 91 1_555 ? ? ? ? ? ? ? 1.534 ? ? metalc1 metalc ? ? A A 26 OP2 ? ? ? 1_555 G MG . MG ? ? A A 34 A MG 106 1_555 ? ? ? ? ? ? ? 2.894 ? ? metalc2 metalc ? ? A A 27 OP2 ? ? ? 1_555 G MG . MG ? ? A A 35 A MG 106 1_555 ? ? ? ? ? ? ? 2.232 ? ? metalc3 metalc ? ? A G 52 O6 ? ? ? 1_555 D CA . CA ? ? A G 60 A CA 103 1_555 ? ? ? ? ? ? ? 2.579 ? ? metalc4 metalc ? ? A C 55 OP1 ? ? ? 1_555 F MG . MG ? ? A C 63 A MG 105 1_555 ? ? ? ? ? ? ? 2.485 ? ? metalc5 metalc ? ? A U 56 OP2 ? ? ? 1_555 F MG . MG ? ? A U 64 A MG 105 1_555 ? ? ? ? ? ? ? 2.710 ? ? metalc6 metalc ? ? A U 56 OP1 ? ? ? 1_555 F MG . MG ? ? A U 64 A MG 105 4_665 ? ? ? ? ? ? ? 2.296 ? ? metalc7 metalc ? ? A A 61 OP1 ? ? ? 1_555 C MG . MG ? ? A A 69 A MG 102 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc8 metalc ? ? A G 70 O6 ? ? ? 1_555 D CA . CA ? ? A G 78 A CA 103 1_555 ? ? ? ? ? ? ? 2.643 ? ? metalc9 metalc ? ? A A23 83 O2C ? ? ? 1_555 C MG . MG ? ? A A23 91 A MG 102 5_554 ? ? ? ? ? ? ? 2.950 ? ? metalc10 metalc ? ? B GMI . O2A ? ? ? 1_555 D CA . CA ? ? A GMI 101 A CA 103 1_555 ? ? ? ? ? ? ? 2.745 ? ? metalc11 metalc ? ? B GMI . O1B ? ? ? 1_555 D CA . CA ? ? A GMI 101 A CA 103 1_555 ? ? ? ? ? ? ? 2.562 ? ? metalc12 metalc ? ? B GMI . O1A ? ? ? 1_555 E MG . MG ? ? A GMI 101 A MG 104 1_555 ? ? ? ? ? ? ? 2.260 ? ? metalc13 metalc ? ? B GMI . O2B ? ? ? 1_555 E MG . MG ? ? A GMI 101 A MG 104 1_555 ? ? ? ? ? ? ? 2.447 ? ? metalc14 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 A HOH 308 5_554 ? ? ? ? ? ? ? 2.062 ? ? metalc15 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 A HOH 309 5_554 ? ? ? ? ? ? ? 2.079 ? ? metalc16 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 A HOH 313 3_565 ? ? ? ? ? ? ? 2.061 ? ? metalc17 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 A HOH 314 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc18 metalc ? ? D CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 103 A HOH 301 1_555 ? ? ? ? ? ? ? 2.306 ? ? metalc19 metalc ? ? D CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 103 A HOH 302 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc20 metalc ? ? D CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 103 A HOH 306 1_555 ? ? ? ? ? ? ? 2.317 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 104 A HOH 303 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 104 A HOH 307 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc23 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 104 A HOH 310 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc24 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 104 A HOH 311 1_555 ? ? ? ? ? ? ? 2.053 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 105 A HOH 304 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc26 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 105 A HOH 305 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc27 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 105 A HOH 312 4_665 ? ? ? ? ? ? ? 2.049 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 80 N3 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 80 O2 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 80 N4 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 79 N3 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 79 O4 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 78 N1 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 78 O6 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 77 N1 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 77 N6 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 76 N3 ? ? A G 16 A A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 48 N3 ? ? A G 17 A A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog28 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 34 N3 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog32 hydrog ? ? A G 11 N3 ? ? ? 1_555 A G 34 N2 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog33 hydrog ? ? A G 11 N1 ? ? ? 1_555 A A 39 N1 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog34 hydrog ? ? A G 11 O6 ? ? ? 1_555 A A 39 N6 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog35 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 37 N1 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 37 N6 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 13 N2 ? ? ? 1_555 A U 63 O2 ? ? A G 21 A U 71 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog41 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 16 N3 ? ? ? 1_555 A A 27 N6 ? ? A C 24 A A 35 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog48 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 24 A G 36 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog49 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 35 N7 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? A U 31 O2 ? ? ? 1_555 A A 35 N6 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog51 hydrog ? ? A A 45 N6 ? ? ? 1_555 A A 76 N7 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog52 hydrog ? ? A A 45 N7 ? ? ? 1_555 A A 76 N6 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog53 hydrog ? ? A A 48 N6 ? ? ? 1_555 A G 75 N3 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog54 hydrog ? ? A A 48 N7 ? ? ? 1_555 A G 75 N2 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog55 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 51 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 52 N1 ? ? ? 1_555 A G 70 O6 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog64 hydrog ? ? A G 52 N2 ? ? ? 1_555 A G 70 N7 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog65 hydrog ? ? A A 53 N3 ? ? ? 1_555 A G 64 N2 ? ? A A 61 A G 72 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog66 hydrog ? ? A A 53 N6 ? ? ? 1_555 A C 69 O2 ? ? A A 61 A C 77 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog67 hydrog ? ? A C 55 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 55 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 55 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A U 56 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A U 56 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 58 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 58 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 7TDC _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.015383 _atom_sites.fract_transf_matrix[1][2] 0.008881 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017763 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009874 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 16.26893 3.65395 ? ? 3.58509 77.28589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 9 9 G G A . n A 1 2 C 2 10 10 C C A . n A 1 3 G 3 11 11 G G A . n A 1 4 A 4 12 12 A A A . n A 1 5 C 5 13 13 C C A . n A 1 6 U 6 14 14 U U A . n A 1 7 C 7 15 15 C C A . n A 1 8 G 8 16 16 G G A . n A 1 9 G 9 17 17 G G A . n A 1 10 G 10 18 18 G G A . n A 1 11 G 11 19 19 G G A . n A 1 12 U 12 20 20 U U A . n A 1 13 G 13 21 21 G G A . n A 1 14 C 14 22 22 C C A . n A 1 15 C 15 23 23 C C A . n A 1 16 C 16 24 24 C C A . n A 1 17 U 17 25 25 U U A . n A 1 18 U 18 26 26 U U A . n A 1 19 C 19 27 ? ? ? A . n A 1 20 U 20 28 ? ? ? A . n A 1 21 G 21 29 ? ? ? A . n A 1 22 C 22 30 30 C C A . n A 1 23 G 23 31 31 G G A . n A 1 24 U 24 32 32 U U A . n A 1 25 G 25 33 33 G G A . n A 1 26 A 26 34 34 A A A . n A 1 27 A 27 35 35 A A A . n A 1 28 G 28 36 36 G G A . n A 1 29 G 29 37 37 G G A . n A 1 30 C 30 38 38 C C A . n A 1 31 U 31 39 39 U U A . n A 1 32 G 32 40 40 G G A . n A 1 33 A 33 41 41 A A A . n A 1 34 G 34 42 42 G G A . n A 1 35 A 35 43 43 A A A . n A 1 36 A 36 44 44 A A A . n A 1 37 A 37 45 45 A A A . n A 1 38 U 38 46 46 U U A . n A 1 39 A 39 47 47 A A A . n A 1 40 C 40 48 48 C C A . n A 1 41 C 41 49 49 C C A . n A 1 42 C 42 50 50 C C A . n A 1 43 G 43 51 51 G G A . n A 1 44 U 44 52 52 U U A . n A 1 45 A 45 53 53 A A A . n A 1 46 U 46 54 54 U U A . n A 1 47 C 47 55 55 C C A . n A 1 48 A 48 56 56 A A A . n A 1 49 C 49 57 57 C C A . n A 1 50 C 50 58 58 C C A . n A 1 51 U 51 59 59 U U A . n A 1 52 G 52 60 60 G G A . n A 1 53 A 53 61 61 A A A . n A 1 54 U 54 62 62 U U A . n A 1 55 C 55 63 63 C C A . n A 1 56 U 56 64 64 U U A . n A 1 57 G 57 65 65 G G A . n A 1 58 G 58 66 66 G G A . n A 1 59 A 59 67 67 A A A . n A 1 60 U 60 68 68 U U A . n A 1 61 A 61 69 69 A A A . n A 1 62 A 62 70 70 A A A . n A 1 63 U 63 71 71 U U A . n A 1 64 G 64 72 72 G G A . n A 1 65 C 65 73 73 C C A . n A 1 66 C 66 74 74 C C A . n A 1 67 A 67 75 75 A A A . n A 1 68 G 68 76 76 G G A . n A 1 69 C 69 77 77 C C A . n A 1 70 G 70 78 78 G G A . n A 1 71 U 71 79 79 U U A . n A 1 72 A 72 80 80 A A A . n A 1 73 G 73 81 81 G G A . n A 1 74 G 74 82 82 G G A . n A 1 75 G 75 83 83 G G A . n A 1 76 A 76 84 84 A A A . n A 1 77 A 77 85 85 A A A . n A 1 78 G 78 86 86 G G A . n A 1 79 U 79 87 87 U U A . n A 1 80 C 80 88 88 C C A . n A 1 81 G 81 89 89 G G A . n A 1 82 C 82 90 90 C C A . n A 1 83 A23 83 91 91 A23 A23 A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email Alexander.Serganov@nyulangone.org _pdbx_contact_author.name_first Alexander _pdbx_contact_author.name_last Serganov _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8328-9310 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GMI 1 101 101 GMI GMI A . C 3 MG 1 102 202 MG MG A . D 4 CA 1 103 203 CA CA A . E 3 MG 1 104 204 MG MG A . F 3 MG 1 105 205 MG MG A . G 3 MG 1 106 206 MG MG A . H 5 HOH 1 301 301 HOH HOH A . H 5 HOH 2 302 303 HOH HOH A . H 5 HOH 3 303 302 HOH HOH A . H 5 HOH 4 304 304 HOH HOH A . H 5 HOH 5 305 306 HOH HOH A . H 5 HOH 6 306 305 HOH HOH A . H 5 HOH 7 307 307 HOH HOH A . H 5 HOH 8 308 308 HOH HOH A . H 5 HOH 9 309 309 HOH HOH A . H 5 HOH 10 310 310 HOH HOH A . H 5 HOH 11 311 311 HOH HOH A . H 5 HOH 12 312 312 HOH HOH A . H 5 HOH 13 313 313 HOH HOH A . H 5 HOH 14 314 314 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 26 ? A A 34 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 OP2 ? A A 27 ? A A 35 ? 1_555 95.8 ? 2 O6 ? A G 52 ? A G 60 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 66.1 ? 3 O6 ? A G 52 ? A G 60 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O2A ? B GMI . ? A GMI 101 ? 1_555 119.6 ? 4 O6 ? A G 70 ? A G 78 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O2A ? B GMI . ? A GMI 101 ? 1_555 147.4 ? 5 O6 ? A G 52 ? A G 60 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O1B ? B GMI . ? A GMI 101 ? 1_555 144.0 ? 6 O6 ? A G 70 ? A G 78 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O1B ? B GMI . ? A GMI 101 ? 1_555 79.1 ? 7 O2A ? B GMI . ? A GMI 101 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O1B ? B GMI . ? A GMI 101 ? 1_555 94.5 ? 8 O6 ? A G 52 ? A G 60 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 301 ? 1_555 89.4 ? 9 O6 ? A G 70 ? A G 78 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 301 ? 1_555 91.7 ? 10 O2A ? B GMI . ? A GMI 101 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 301 ? 1_555 119.4 ? 11 O1B ? B GMI . ? A GMI 101 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 301 ? 1_555 82.7 ? 12 O6 ? A G 52 ? A G 60 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 302 ? 1_555 67.7 ? 13 O6 ? A G 70 ? A G 78 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 302 ? 1_555 133.3 ? 14 O2A ? B GMI . ? A GMI 101 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 302 ? 1_555 59.0 ? 15 O1B ? B GMI . ? A GMI 101 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 302 ? 1_555 147.7 ? 16 O ? H HOH . ? A HOH 301 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 302 ? 1_555 94.3 ? 17 O6 ? A G 52 ? A G 60 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 306 ? 1_555 89.2 ? 18 O6 ? A G 70 ? A G 78 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 306 ? 1_555 83.6 ? 19 O2A ? B GMI . ? A GMI 101 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 306 ? 1_555 65.1 ? 20 O1B ? B GMI . ? A GMI 101 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 306 ? 1_555 95.8 ? 21 O ? H HOH . ? A HOH 301 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 306 ? 1_555 175.3 ? 22 O ? H HOH . ? A HOH 302 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? H HOH . ? A HOH 306 ? 1_555 89.3 ? 23 OP1 ? A C 55 ? A C 63 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 OP2 ? A U 56 ? A U 64 ? 1_555 65.3 ? 24 OP1 ? A C 55 ? A C 63 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 OP1 ? A U 56 ? A U 64 ? 1_555 76.5 ? 25 OP2 ? A U 56 ? A U 64 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 OP1 ? A U 56 ? A U 64 ? 1_555 44.0 ? 26 OP1 ? A C 55 ? A C 63 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 304 ? 1_555 69.6 ? 27 OP2 ? A U 56 ? A U 64 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 304 ? 1_555 69.9 ? 28 OP1 ? A U 56 ? A U 64 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 304 ? 1_555 113.5 ? 29 OP1 ? A C 55 ? A C 63 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 305 ? 1_555 130.9 ? 30 OP2 ? A U 56 ? A U 64 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 305 ? 1_555 65.9 ? 31 OP1 ? A U 56 ? A U 64 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 305 ? 1_555 72.8 ? 32 O ? H HOH . ? A HOH 304 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 305 ? 1_555 88.8 ? 33 OP1 ? A C 55 ? A C 63 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 312 ? 4_665 135.2 ? 34 OP2 ? A U 56 ? A U 64 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 312 ? 4_665 152.3 ? 35 OP1 ? A U 56 ? A U 64 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 312 ? 4_665 143.0 ? 36 O ? H HOH . ? A HOH 304 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 312 ? 4_665 98.0 ? 37 O ? H HOH . ? A HOH 305 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 312 ? 4_665 89.8 ? 38 OP1 ? A A 61 ? A A 69 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O2C ? A A23 83 ? A A23 91 ? 1_555 89.2 ? 39 OP1 ? A A 61 ? A A 69 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 308 ? 5_554 84.4 ? 40 O2C ? A A23 83 ? A A23 91 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 308 ? 5_554 14.3 ? 41 OP1 ? A A 61 ? A A 69 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 309 ? 5_554 93.9 ? 42 O2C ? A A23 83 ? A A23 91 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 309 ? 5_554 168.4 ? 43 O ? H HOH . ? A HOH 308 ? 5_554 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 309 ? 5_554 177.2 ? 44 OP1 ? A A 61 ? A A 69 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 313 ? 3_565 167.0 ? 45 O2C ? A A23 83 ? A A23 91 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 313 ? 3_565 86.1 ? 46 O ? H HOH . ? A HOH 308 ? 5_554 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 313 ? 3_565 88.1 ? 47 O ? H HOH . ? A HOH 309 ? 5_554 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 313 ? 3_565 93.1 ? 48 OP1 ? A A 61 ? A A 69 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 314 ? 1_555 98.3 ? 49 O2C ? A A23 83 ? A A23 91 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 314 ? 1_555 77.1 ? 50 O ? H HOH . ? A HOH 308 ? 5_554 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 314 ? 1_555 91.1 ? 51 O ? H HOH . ? A HOH 309 ? 5_554 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 314 ? 1_555 91.4 ? 52 O ? H HOH . ? A HOH 313 ? 3_565 MG ? C MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 314 ? 1_555 92.4 ? 53 O1A ? B GMI . ? A GMI 101 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O2B ? B GMI . ? A GMI 101 ? 1_555 66.0 ? 54 O1A ? B GMI . ? A GMI 101 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 303 ? 1_555 88.5 ? 55 O2B ? B GMI . ? A GMI 101 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 303 ? 1_555 76.9 ? 56 O1A ? B GMI . ? A GMI 101 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 307 ? 1_555 93.9 ? 57 O2B ? B GMI . ? A GMI 101 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 307 ? 1_555 157.2 ? 58 O ? H HOH . ? A HOH 303 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 307 ? 1_555 92.7 ? 59 O1A ? B GMI . ? A GMI 101 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 310 ? 1_555 170.8 ? 60 O2B ? B GMI . ? A GMI 101 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 310 ? 1_555 105.4 ? 61 O ? H HOH . ? A HOH 303 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 310 ? 1_555 86.2 ? 62 O ? H HOH . ? A HOH 307 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 310 ? 1_555 93.9 ? 63 O1A ? B GMI . ? A GMI 101 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 311 ? 1_555 90.5 ? 64 O2B ? B GMI . ? A GMI 101 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 311 ? 1_555 97.7 ? 65 O ? H HOH . ? A HOH 303 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 311 ? 1_555 174.5 ? 66 O ? H HOH . ? A HOH 307 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 311 ? 1_555 92.9 ? 67 O ? H HOH . ? A HOH 310 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? H HOH . ? A HOH 311 ? 1_555 94.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-16 2 'Structure model' 1 1 2022-03-02 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' diffrn_radiation 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_diffrn_radiation.pdbx_diffrn_protocol' 6 3 'Structure model' '_diffrn_radiation.pdbx_monochromatic_or_laue_m_l' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+2/3 3 -x+y,-x,z+1/3 4 -y,-x,-z+1/3 5 -x+y,y,-z+2/3 6 x,x-y,-z # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7TDC _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 G _pdbx_validate_close_contact.auth_seq_id_1 78 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O1B _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GMI _pdbx_validate_close_contact.auth_seq_id_2 101 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 C _pdbx_validate_rmsd_bond.auth_seq_id_1 90 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 A23 _pdbx_validate_rmsd_bond.auth_seq_id_2 91 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.534 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.073 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A C 90 ? ? "O3'" A C 90 ? ? P A A23 91 ? ? 140.12 119.70 20.42 1.20 Y 2 1 "O3'" A C 90 ? ? P A A23 91 ? ? "O5'" A A23 91 ? ? 89.51 104.00 -14.49 1.90 Y 3 1 "O3'" A C 90 ? ? P A A23 91 ? ? OP2 A A23 91 ? ? 122.66 110.50 12.16 1.10 Y # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 26 ? "C5'" ? A U 18 "C5'" 2 1 Y 1 A U 26 ? "C4'" ? A U 18 "C4'" 3 1 Y 1 A U 26 ? "O4'" ? A U 18 "O4'" 4 1 Y 1 A U 26 ? "C3'" ? A U 18 "C3'" 5 1 Y 1 A U 26 ? "O3'" ? A U 18 "O3'" 6 1 Y 1 A U 26 ? "C2'" ? A U 18 "C2'" 7 1 Y 1 A U 26 ? "O2'" ? A U 18 "O2'" 8 1 Y 1 A U 26 ? "C1'" ? A U 18 "C1'" 9 1 Y 1 A U 26 ? N1 ? A U 18 N1 10 1 Y 1 A U 26 ? C2 ? A U 18 C2 11 1 Y 1 A U 26 ? O2 ? A U 18 O2 12 1 Y 1 A U 26 ? N3 ? A U 18 N3 13 1 Y 1 A U 26 ? C4 ? A U 18 C4 14 1 Y 1 A U 26 ? O4 ? A U 18 O4 15 1 Y 1 A U 26 ? C5 ? A U 18 C5 16 1 Y 1 A U 26 ? C6 ? A U 18 C6 17 1 Y 1 A U 46 ? "O2'" ? A U 38 "O2'" 18 1 Y 1 A U 46 ? N1 ? A U 38 N1 19 1 Y 1 A U 46 ? C2 ? A U 38 C2 20 1 Y 1 A U 46 ? O2 ? A U 38 O2 21 1 Y 1 A U 46 ? N3 ? A U 38 N3 22 1 Y 1 A U 46 ? C4 ? A U 38 C4 23 1 Y 1 A U 46 ? O4 ? A U 38 O4 24 1 Y 1 A U 46 ? C5 ? A U 38 C5 25 1 Y 1 A U 46 ? C6 ? A U 38 C6 26 1 Y 1 A C 55 ? "O4'" ? A C 47 "O4'" 27 1 Y 1 A C 55 ? "C2'" ? A C 47 "C2'" 28 1 Y 1 A C 55 ? "O2'" ? A C 47 "O2'" 29 1 Y 1 A C 55 ? "C1'" ? A C 47 "C1'" 30 1 Y 1 A C 55 ? N1 ? A C 47 N1 31 1 Y 1 A C 55 ? C2 ? A C 47 C2 32 1 Y 1 A C 55 ? O2 ? A C 47 O2 33 1 Y 1 A C 55 ? N3 ? A C 47 N3 34 1 Y 1 A C 55 ? C4 ? A C 47 C4 35 1 Y 1 A C 55 ? N4 ? A C 47 N4 36 1 Y 1 A C 55 ? C5 ? A C 47 C5 37 1 Y 1 A C 55 ? C6 ? A C 47 C6 38 1 Y 1 A U 79 ? "O4'" ? A U 71 "O4'" 39 1 Y 1 A U 79 ? "C2'" ? A U 71 "C2'" 40 1 Y 1 A U 79 ? "O2'" ? A U 71 "O2'" 41 1 Y 1 A U 79 ? "C1'" ? A U 71 "C1'" 42 1 Y 1 A U 79 ? N1 ? A U 71 N1 43 1 Y 1 A U 79 ? C2 ? A U 71 C2 44 1 Y 1 A U 79 ? O2 ? A U 71 O2 45 1 Y 1 A U 79 ? N3 ? A U 71 N3 46 1 Y 1 A U 79 ? C4 ? A U 71 C4 47 1 Y 1 A U 79 ? O4 ? A U 71 O4 48 1 Y 1 A U 79 ? C5 ? A U 71 C5 49 1 Y 1 A U 79 ? C6 ? A U 71 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 27 ? A C 19 2 1 Y 1 A U 28 ? A U 20 3 1 Y 1 A G 29 ? A G 21 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A23 PC P N S 38 A23 O1C O N N 39 A23 O2C O N N 40 A23 P P N N 41 A23 OP1 O N N 42 A23 OP2 O N N 43 A23 OP3 O N N 44 A23 "O5'" O N N 45 A23 "C5'" C N N 46 A23 "C4'" C N R 47 A23 "O4'" O N N 48 A23 "C3'" C N R 49 A23 "O3'" O N N 50 A23 "C2'" C N R 51 A23 "O2'" O N N 52 A23 "C1'" C N R 53 A23 N9 N Y N 54 A23 C8 C Y N 55 A23 N7 N Y N 56 A23 C5 C Y N 57 A23 C6 C Y N 58 A23 N6 N N N 59 A23 N1 N Y N 60 A23 C2 C Y N 61 A23 N3 N Y N 62 A23 C4 C Y N 63 A23 HOC2 H N N 64 A23 HOP2 H N N 65 A23 HOP3 H N N 66 A23 "H5'" H N N 67 A23 "H5''" H N N 68 A23 "H4'" H N N 69 A23 "H3'" H N N 70 A23 "H2'" H N N 71 A23 "H1'" H N N 72 A23 H8 H N N 73 A23 HN61 H N N 74 A23 HN62 H N N 75 A23 H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 CA CA CA N N 112 G OP3 O N N 113 G P P N N 114 G OP1 O N N 115 G OP2 O N N 116 G "O5'" O N N 117 G "C5'" C N N 118 G "C4'" C N R 119 G "O4'" O N N 120 G "C3'" C N S 121 G "O3'" O N N 122 G "C2'" C N R 123 G "O2'" O N N 124 G "C1'" C N R 125 G N9 N Y N 126 G C8 C Y N 127 G N7 N Y N 128 G C5 C Y N 129 G C6 C N N 130 G O6 O N N 131 G N1 N N N 132 G C2 C N N 133 G N2 N N N 134 G N3 N N N 135 G C4 C Y N 136 G HOP3 H N N 137 G HOP2 H N N 138 G "H5'" H N N 139 G "H5''" H N N 140 G "H4'" H N N 141 G "H3'" H N N 142 G "HO3'" H N N 143 G "H2'" H N N 144 G "HO2'" H N N 145 G "H1'" H N N 146 G H8 H N N 147 G H1 H N N 148 G H21 H N N 149 G H22 H N N 150 GMI "N1'" N Y N 151 GMI "C2'" C Y N 152 GMI CM2 C N N 153 GMI "N3'" N Y N 154 GMI "C4'" C Y N 155 GMI "N4'" N N N 156 GMI "C5'" C Y N 157 GMI "C6'" C Y N 158 GMI "C7'" C N N 159 GMI N3 N Y N 160 GMI C2 C Y N 161 GMI S1 S Y N 162 GMI C5 C Y N 163 GMI C4 C Y N 164 GMI CM4 C N N 165 GMI C6 C N N 166 GMI C7 C N N 167 GMI O7 O N N 168 GMI PA P N N 169 GMI O1A O N N 170 GMI O2A O N N 171 GMI PB P N N 172 GMI O1B O N N 173 GMI O2B O N N 174 GMI O3B O N N 175 GMI C3A C N N 176 GMI H1 H N N 177 GMI H2 H N N 178 GMI H3 H N N 179 GMI H4 H N N 180 GMI H5 H N N 181 GMI H6 H N N 182 GMI H7 H N N 183 GMI H8 H N N 184 GMI H9 H N N 185 GMI H10 H N N 186 GMI H11 H N N 187 GMI H12 H N N 188 GMI H13 H N N 189 GMI H14 H N N 190 GMI H15 H N N 191 GMI H16 H N N 192 GMI H17 H N N 193 GMI H18 H N N 194 GMI H19 H N N 195 GMI H20 H N N 196 GMI H21 H N N 197 HOH O O N N 198 HOH H1 H N N 199 HOH H2 H N N 200 MG MG MG N N 201 U OP3 O N N 202 U P P N N 203 U OP1 O N N 204 U OP2 O N N 205 U "O5'" O N N 206 U "C5'" C N N 207 U "C4'" C N R 208 U "O4'" O N N 209 U "C3'" C N S 210 U "O3'" O N N 211 U "C2'" C N R 212 U "O2'" O N N 213 U "C1'" C N R 214 U N1 N N N 215 U C2 C N N 216 U O2 O N N 217 U N3 N N N 218 U C4 C N N 219 U O4 O N N 220 U C5 C N N 221 U C6 C N N 222 U HOP3 H N N 223 U HOP2 H N N 224 U "H5'" H N N 225 U "H5''" H N N 226 U "H4'" H N N 227 U "H3'" H N N 228 U "HO3'" H N N 229 U "H2'" H N N 230 U "HO2'" H N N 231 U "H1'" H N N 232 U H3 H N N 233 U H5 H N N 234 U H6 H N N 235 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A23 PC O1C doub N N 40 A23 PC O2C sing N N 41 A23 PC "O3'" sing N N 42 A23 PC "O2'" sing N N 43 A23 O2C HOC2 sing N N 44 A23 P OP1 doub N N 45 A23 P OP2 sing N N 46 A23 P OP3 sing N N 47 A23 P "O5'" sing N N 48 A23 OP2 HOP2 sing N N 49 A23 OP3 HOP3 sing N N 50 A23 "O5'" "C5'" sing N N 51 A23 "C5'" "C4'" sing N N 52 A23 "C5'" "H5'" sing N N 53 A23 "C5'" "H5''" sing N N 54 A23 "C4'" "O4'" sing N N 55 A23 "C4'" "C3'" sing N N 56 A23 "C4'" "H4'" sing N N 57 A23 "O4'" "C1'" sing N N 58 A23 "C3'" "O3'" sing N N 59 A23 "C3'" "C2'" sing N N 60 A23 "C3'" "H3'" sing N N 61 A23 "C2'" "O2'" sing N N 62 A23 "C2'" "C1'" sing N N 63 A23 "C2'" "H2'" sing N N 64 A23 "C1'" N9 sing N N 65 A23 "C1'" "H1'" sing N N 66 A23 N9 C8 sing Y N 67 A23 N9 C4 sing Y N 68 A23 C8 N7 doub Y N 69 A23 C8 H8 sing N N 70 A23 N7 C5 sing Y N 71 A23 C5 C6 sing Y N 72 A23 C5 C4 doub Y N 73 A23 C6 N6 sing N N 74 A23 C6 N1 doub Y N 75 A23 N6 HN61 sing N N 76 A23 N6 HN62 sing N N 77 A23 N1 C2 sing Y N 78 A23 C2 N3 doub Y N 79 A23 C2 H2 sing N N 80 A23 N3 C4 sing Y N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 GMI CM2 "C2'" sing N N 158 GMI "C2'" "N3'" doub Y N 159 GMI "C2'" "N1'" sing Y N 160 GMI "N3'" "C4'" sing Y N 161 GMI O3B PB doub N N 162 GMI "N1'" "C6'" doub Y N 163 GMI "C4'" "N4'" sing N N 164 GMI "C4'" "C5'" doub Y N 165 GMI C2 S1 sing Y N 166 GMI C2 N3 doub Y N 167 GMI "C6'" "C5'" sing Y N 168 GMI S1 C5 sing Y N 169 GMI "C5'" "C7'" sing N N 170 GMI "C7'" N3 sing N N 171 GMI N3 C4 sing Y N 172 GMI PB C3A sing N N 173 GMI PB O1B sing N N 174 GMI PB O2B sing N N 175 GMI C3A PA sing N N 176 GMI C5 C4 doub Y N 177 GMI C5 C6 sing N N 178 GMI C4 CM4 sing N N 179 GMI C7 C6 sing N N 180 GMI C7 O7 sing N N 181 GMI PA O7 sing N N 182 GMI PA O1A doub N N 183 GMI PA O2A sing N N 184 GMI CM2 H1 sing N N 185 GMI CM2 H2 sing N N 186 GMI CM2 H3 sing N N 187 GMI "N4'" H4 sing N N 188 GMI "N4'" H5 sing N N 189 GMI "C6'" H6 sing N N 190 GMI "C7'" H7 sing N N 191 GMI "C7'" H8 sing N N 192 GMI C2 H9 sing N N 193 GMI CM4 H10 sing N N 194 GMI CM4 H11 sing N N 195 GMI CM4 H12 sing N N 196 GMI C6 H13 sing N N 197 GMI C6 H14 sing N N 198 GMI C7 H15 sing N N 199 GMI C7 H16 sing N N 200 GMI O2A H17 sing N N 201 GMI O1B H18 sing N N 202 GMI O2B H19 sing N N 203 GMI C3A H20 sing N N 204 GMI C3A H21 sing N N 205 HOH O H1 sing N N 206 HOH O H2 sing N N 207 U OP3 P sing N N 208 U OP3 HOP3 sing N N 209 U P OP1 doub N N 210 U P OP2 sing N N 211 U P "O5'" sing N N 212 U OP2 HOP2 sing N N 213 U "O5'" "C5'" sing N N 214 U "C5'" "C4'" sing N N 215 U "C5'" "H5'" sing N N 216 U "C5'" "H5''" sing N N 217 U "C4'" "O4'" sing N N 218 U "C4'" "C3'" sing N N 219 U "C4'" "H4'" sing N N 220 U "O4'" "C1'" sing N N 221 U "C3'" "O3'" sing N N 222 U "C3'" "C2'" sing N N 223 U "C3'" "H3'" sing N N 224 U "O3'" "HO3'" sing N N 225 U "C2'" "O2'" sing N N 226 U "C2'" "C1'" sing N N 227 U "C2'" "H2'" sing N N 228 U "O2'" "HO2'" sing N N 229 U "C1'" N1 sing N N 230 U "C1'" "H1'" sing N N 231 U N1 C2 sing N N 232 U N1 C6 sing N N 233 U C2 O2 doub N N 234 U C2 N3 sing N N 235 U N3 C4 sing N N 236 U N3 H3 sing N N 237 U C4 O4 doub N N 238 U C4 C5 sing N N 239 U C5 C6 doub N N 240 U C5 H5 sing N N 241 U C6 H6 sing N N 242 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7TDC 'double helix' 7TDC 'a-form double helix' 7TDC 'hairpin loop' 7TDC 'bulge loop' 7TDC 'mismatched base pair' 7TDC 'internal loop' 7TDC 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 82 1_555 -0.192 -0.100 0.757 7.790 -2.231 3.110 1 A_G9:C90_A A 9 ? A 90 ? 19 1 1 A C 2 1_555 A G 81 1_555 0.099 -0.283 0.727 -0.197 -5.087 -2.321 2 A_C10:G89_A A 10 ? A 89 ? 19 1 1 A G 3 1_555 A C 80 1_555 -0.235 -0.138 0.064 -5.243 -9.107 0.728 3 A_G11:C88_A A 11 ? A 88 ? 19 1 1 A A 4 1_555 A U 79 1_555 -0.013 -0.069 -0.271 -8.829 -6.332 3.164 4 A_A12:U87_A A 12 ? A 87 ? 20 1 1 A C 5 1_555 A G 78 1_555 0.210 -0.163 0.055 -1.398 -6.842 0.712 5 A_C13:G86_A A 13 ? A 86 ? 19 1 1 A U 6 1_555 A A 77 1_555 -0.037 -0.032 -0.140 -2.746 -3.265 0.750 6 A_U14:A85_A A 14 ? A 85 ? 20 1 1 A C 7 1_555 A G 43 1_555 0.162 -0.226 0.207 4.877 -6.115 0.030 7 A_C15:G51_A A 15 ? A 51 ? 19 1 1 A G 8 1_555 A C 42 1_555 -0.216 -0.093 -0.227 -8.214 -13.426 2.920 8 A_G16:C50_A A 16 ? A 50 ? 19 1 1 A G 9 1_555 A C 41 1_555 -0.215 -0.099 0.167 -14.501 -6.278 1.267 9 A_G17:C49_A A 17 ? A 49 ? 19 1 1 A G 10 1_555 A C 40 1_555 -0.128 -0.182 0.592 -4.810 -4.124 -3.524 10 A_G18:C48_A A 18 ? A 48 ? 19 1 1 A G 11 1_555 A A 39 1_555 -0.418 1.574 0.015 0.184 0.130 -17.998 11 A_G19:A47_A A 19 ? A 47 ? 8 1 1 A U 12 1_555 A A 37 1_555 0.167 -0.154 0.324 6.988 10.135 7.896 12 A_U20:A45_A A 20 ? A 45 ? 20 1 1 A A 27 1_555 A C 16 1_555 -2.848 -0.403 -0.699 -17.679 5.061 -21.557 13 A_A35:C24_A A 35 ? A 24 ? ? 1 1 A G 28 1_555 A C 15 1_555 -0.244 -0.071 -0.083 2.149 1.034 3.198 14 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A G 29 1_555 A C 14 1_555 -0.300 -0.210 0.271 -1.494 6.786 4.015 15 A_G37:C22_A A 37 ? A 22 ? 19 1 1 A C 30 1_555 A G 13 1_555 0.239 -0.208 0.266 -6.920 9.032 -1.891 16 A_C38:G21_A A 38 ? A 21 ? 19 1 1 A U 31 1_555 A A 35 1_555 4.433 -2.153 0.081 3.709 4.393 -96.407 17 A_U39:A43_A A 39 ? A 43 ? 24 4 1 A A 45 1_555 A A 76 1_555 5.627 -5.353 0.080 -11.338 20.287 169.485 18 A_A53:A84_A A 53 ? A 84 ? 2 8 1 A A 48 1_555 A G 75 1_555 -6.939 -4.569 -0.171 6.687 -10.013 -11.562 19 A_A56:G83_A A 56 ? A 83 ? 11 10 1 A C 49 1_555 A G 74 1_555 0.158 -0.118 0.267 1.336 -0.912 0.950 20 A_C57:G82_A A 57 ? A 82 ? 19 1 1 A C 50 1_555 A G 73 1_555 0.229 -0.205 0.208 -1.405 -5.794 -0.288 21 A_C58:G81_A A 58 ? A 81 ? 19 1 1 A U 51 1_555 A A 72 1_555 0.023 -0.165 0.077 -9.511 -1.937 2.768 22 A_U59:A80_A A 59 ? A 80 ? 20 1 1 A G 52 1_555 A G 70 1_555 1.147 3.350 0.162 -7.527 10.056 -96.149 23 A_G60:G78_A A 60 ? A 78 ? 6 3 1 A A 53 1_555 A C 69 1_555 -2.117 2.641 0.436 -3.871 4.896 102.627 24 A_A61:C77_A A 61 ? A 77 ? ? ? 1 A C 55 1_555 A G 68 1_555 0.161 -0.190 0.574 -1.711 -4.609 1.121 25 A_C63:G76_A A 63 ? A 76 ? 19 1 1 A U 56 1_555 A A 67 1_555 -0.054 -0.174 0.541 -4.054 -6.084 3.217 26 A_U64:A75_A A 64 ? A 75 ? 20 1 1 A G 57 1_555 A C 66 1_555 -0.277 -0.148 0.258 0.984 -0.883 0.156 27 A_G65:C74_A A 65 ? A 74 ? 19 1 1 A G 58 1_555 A C 65 1_555 -0.220 -0.233 -0.290 -2.129 -3.626 -0.311 28 A_G66:C73_A A 66 ? A 73 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 82 1_555 A C 2 1_555 A G 81 1_555 -0.106 -1.308 3.327 1.095 1.664 37.568 -2.246 0.308 3.264 2.582 -1.699 37.619 1 AA_G9C10:G89C90_AA A 9 ? A 90 ? A 10 ? A 89 ? 1 A C 2 1_555 A G 81 1_555 A G 3 1_555 A C 80 1_555 0.028 -1.801 3.040 3.804 7.976 32.304 -4.269 0.495 2.523 14.012 -6.682 33.460 2 AA_C10G11:C88G89_AA A 10 ? A 89 ? A 11 ? A 88 ? 1 A G 3 1_555 A C 80 1_555 A A 4 1_555 A U 79 1_555 -0.527 -1.169 3.278 -1.401 3.117 31.234 -2.737 0.713 3.169 5.767 2.593 31.415 3 AA_G11A12:U87C88_AA A 11 ? A 88 ? A 12 ? A 87 ? 1 A A 4 1_555 A U 79 1_555 A C 5 1_555 A G 78 1_555 -0.692 -1.067 3.046 -5.740 4.872 32.171 -2.642 0.315 2.934 8.645 10.185 33.018 4 AA_A12C13:G86U87_AA A 12 ? A 87 ? A 13 ? A 86 ? 1 A C 5 1_555 A G 78 1_555 A U 6 1_555 A A 77 1_555 0.323 -1.092 3.264 2.903 2.240 33.390 -2.254 -0.087 3.202 3.884 -5.033 33.585 5 AA_C13U14:A85G86_AA A 13 ? A 86 ? A 14 ? A 85 ? 1 A U 6 1_555 A A 77 1_555 A C 7 1_555 A G 43 1_555 1.307 -0.850 3.076 -2.349 5.317 40.743 -1.735 -2.092 2.871 7.590 3.353 41.138 6 AA_U14C15:G51A85_AA A 14 ? A 85 ? A 15 ? A 51 ? 1 A C 7 1_555 A G 43 1_555 A G 8 1_555 A C 42 1_555 0.790 -1.875 3.504 1.539 8.126 29.675 -5.127 -1.187 2.936 15.490 -2.935 30.781 7 AA_C15G16:C50G51_AA A 15 ? A 51 ? A 16 ? A 50 ? 1 A G 8 1_555 A C 42 1_555 A G 9 1_555 A C 41 1_555 -0.680 -1.766 3.433 -4.040 0.373 35.191 -2.961 0.489 3.469 0.614 6.655 35.417 8 AA_G16G17:C49C50_AA A 16 ? A 50 ? A 17 ? A 49 ? 1 A G 9 1_555 A C 41 1_555 A G 10 1_555 A C 40 1_555 0.282 -1.971 2.926 3.263 4.319 29.288 -4.610 0.036 2.630 8.450 -6.385 29.774 9 AA_G17G18:C48C49_AA A 17 ? A 49 ? A 18 ? A 48 ? 1 A G 10 1_555 A C 40 1_555 A G 11 1_555 A A 39 1_555 -1.043 -1.009 3.042 7.107 4.047 32.710 -2.320 2.817 2.624 7.049 -12.379 33.690 10 AA_G18G19:A47C48_AA A 18 ? A 48 ? A 19 ? A 47 ? 1 A G 11 1_555 A A 39 1_555 A U 12 1_555 A A 37 1_555 0.205 0.269 3.462 -0.616 11.387 11.611 -7.850 -1.201 2.656 44.561 2.409 16.260 11 AA_G19U20:A45A47_AA A 19 ? A 47 ? A 20 ? A 45 ? 1 A A 27 1_555 A C 16 1_555 A G 28 1_555 A C 15 1_555 1.708 -1.046 2.833 -13.916 10.291 44.292 -1.936 -2.984 1.966 13.072 17.677 47.395 12 AA_A35G36:C23C24_AA A 35 ? A 24 ? A 36 ? A 23 ? 1 A G 28 1_555 A C 15 1_555 A G 29 1_555 A C 14 1_555 -0.754 -1.991 2.956 -7.978 9.853 34.977 -4.246 0.277 2.435 15.767 12.767 37.136 13 AA_G36G37:C22C23_AA A 36 ? A 23 ? A 37 ? A 22 ? 1 A G 29 1_555 A C 14 1_555 A C 30 1_555 A G 13 1_555 -0.776 -2.177 3.310 2.238 8.703 36.446 -4.447 1.479 2.687 13.660 -3.513 37.501 14 AA_G37C38:G21C22_AA A 37 ? A 22 ? A 38 ? A 21 ? 1 A C 30 1_555 A G 13 1_555 A U 31 1_555 A A 35 1_555 -3.182 -1.156 3.031 11.779 3.394 70.356 -1.091 3.073 2.491 2.923 -10.146 71.280 15 AA_C38U39:A43G21_AA A 38 ? A 21 ? A 39 ? A 43 ? 1 A A 45 1_555 A A 76 1_555 A A 48 1_555 A G 75 1_555 -2.394 -1.980 0.685 146.877 -84.284 -51.424 1.301 -0.665 1.280 43.641 76.051 -170.399 16 AA_A53A56:G83A84_AA A 53 ? A 84 ? A 56 ? A 83 ? 1 A A 48 1_555 A G 75 1_555 A C 49 1_555 A G 74 1_555 1.038 -0.861 3.585 -9.371 8.111 66.585 -1.105 -1.316 3.319 7.323 8.460 67.598 17 AA_A56C57:G82G83_AA A 56 ? A 83 ? A 57 ? A 82 ? 1 A C 49 1_555 A G 74 1_555 A C 50 1_555 A G 73 1_555 -0.867 -2.238 3.122 -3.854 4.336 27.454 -5.559 0.952 2.834 9.008 8.008 28.049 18 AA_C57C58:G81G82_AA A 57 ? A 82 ? A 58 ? A 81 ? 1 A C 50 1_555 A G 73 1_555 A U 51 1_555 A A 72 1_555 0.531 -1.232 3.351 2.056 5.886 40.984 -2.371 -0.530 3.173 8.348 -2.916 41.436 19 AA_C58U59:A80G81_AA A 58 ? A 81 ? A 59 ? A 80 ? 1 A U 51 1_555 A A 72 1_555 A G 52 1_555 A G 70 1_555 1.944 -1.950 2.798 13.994 7.945 90.786 -1.491 -1.117 2.871 5.545 -9.766 91.894 20 AA_U59G60:G78A80_AA A 59 ? A 80 ? A 60 ? A 78 ? 1 A G 52 1_555 A G 70 1_555 A A 53 1_555 A C 69 1_555 2.799 1.907 0.546 26.907 -168.488 -175.516 -0.942 1.402 0.602 84.247 13.454 -179.634 21 AA_G60A61:C77G78_AA A 60 ? A 78 ? A 61 ? A 77 ? 1 A A 53 1_555 A C 69 1_555 A C 55 1_555 A G 68 1_555 -3.508 -0.854 -1.198 98.418 -133.022 -23.278 0.407 -1.785 1.127 71.166 52.653 -165.773 22 AA_A61C63:G76C77_AA A 61 ? A 77 ? A 63 ? A 76 ? 1 A C 55 1_555 A G 68 1_555 A U 56 1_555 A A 67 1_555 -0.441 -1.915 3.113 -2.180 3.082 33.436 -3.776 0.432 2.952 5.337 3.773 33.642 23 AA_C63U64:A75G76_AA A 63 ? A 76 ? A 64 ? A 75 ? 1 A U 56 1_555 A A 67 1_555 A G 57 1_555 A C 66 1_555 -0.638 -1.682 2.673 -0.669 11.946 32.094 -4.240 1.008 1.953 20.730 1.161 34.197 24 AA_U64G65:C74A75_AA A 64 ? A 75 ? A 65 ? A 74 ? 1 A G 57 1_555 A C 66 1_555 A G 58 1_555 A C 65 1_555 0.360 -2.057 3.345 3.651 5.098 32.641 -4.436 -0.030 3.020 8.967 -6.422 33.221 25 AA_G65G66:C73C74_AA A 65 ? A 74 ? A 66 ? A 73 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01GM112940 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GMI _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GMI _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '[2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-5-yl]ethoxy-oxidanyl-phosphoryl]methylphosphonic acid' GMI 3 'MAGNESIUM ION' MG 4 'CALCIUM ION' CA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2HOJ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 32 1 2' _space_group.name_Hall 'P 32 2 (x,y,z+1/6)' _space_group.IT_number 153 _space_group.crystal_system trigonal _space_group.id 1 #