data_7UQ6 # _entry.id 7UQ6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7UQ6 pdb_00007uq6 10.2210/pdb7uq6/pdb WWPDB D_1000264659 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7UQ6 _pdbx_database_status.recvd_initial_deposition_date 2022-04-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Grigg, J.C.' 1 0000-0002-5627-273X 'Price, I.R.' 2 ? 'Ke, A.' 3 0000-0001-5957-7822 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Crystals _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2073-4352 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;tRNA Fusion to Streamline RNA Structure Determination: Case Studies in Probing Aminoacyl-tRNA Sensing Mechanisms by the T-Box Riboswitch ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/cryst12050694 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Grigg, J.C.' 1 ? primary 'Price, I.R.' 2 ? primary 'Ke, A.' 3 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7UQ6 _cell.details ? _cell.formula_units_Z ? _cell.length_a 88.576 _cell.length_a_esd ? _cell.length_b 165.208 _cell.length_b_esd ? _cell.length_c 57.047 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (86-MER)' 27936.480 1 ? ? ? ? 2 non-polymer syn 'BARIUM ION' 137.327 14 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 11 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)CGGAAGUAGUUCAGUGGUAGAACACCGGGUGGAACCCCAGGAAACUGGCCCGGGUCGCGCGGGUUCGAGUCCCGU CUUCCGCUCC ; _entity_poly.pdbx_seq_one_letter_code_can ;GCGGAAGUAGUUCAGUGGUAGAACACCGGGUGGAACCCCAGGAAACUGGCCCGGGUCGCGCGGGUUCGAGUCCCGUCUUC CGCUCC ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 C n 1 3 G n 1 4 G n 1 5 A n 1 6 A n 1 7 G n 1 8 U n 1 9 A n 1 10 G n 1 11 U n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 U n 1 20 A n 1 21 G n 1 22 A n 1 23 A n 1 24 C n 1 25 A n 1 26 C n 1 27 C n 1 28 G n 1 29 G n 1 30 G n 1 31 U n 1 32 G n 1 33 G n 1 34 A n 1 35 A n 1 36 C n 1 37 C n 1 38 C n 1 39 C n 1 40 A n 1 41 G n 1 42 G n 1 43 A n 1 44 A n 1 45 A n 1 46 C n 1 47 U n 1 48 G n 1 49 G n 1 50 C n 1 51 C n 1 52 C n 1 53 G n 1 54 G n 1 55 G n 1 56 U n 1 57 C n 1 58 G n 1 59 C n 1 60 G n 1 61 C n 1 62 G n 1 63 G n 1 64 G n 1 65 U n 1 66 U n 1 67 C n 1 68 G n 1 69 A n 1 70 G n 1 71 U n 1 72 C n 1 73 C n 1 74 C n 1 75 G n 1 76 U n 1 77 C n 1 78 U n 1 79 U n 1 80 C n 1 81 C n 1 82 G n 1 83 C n 1 84 U n 1 85 C n 1 86 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 86 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacillus kaustophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1462 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name unidentified _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 32644 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'in vitro transcription' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7UQ6 _struct_ref.pdbx_db_accession 7UQ6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7UQ6 _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 86 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7UQ6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 86 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 86 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7UQ6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.74 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 67.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '50 mM sodium cacodylate pH 6.0, 80 mM KCl, 12 mM spermine, 20 mM BaCl2, 15% 2-methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-04-11 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7UQ6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.951 _reflns.d_resolution_low 32.213 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 9103 _reflns.number_obs 9103 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.500 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.200 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.115 _reflns.pdbx_netI_over_av_sigmaI 4.600 _reflns.pdbx_netI_over_sigmaI 18.900 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.139 _reflns.pdbx_Rpim_I_all 0.055 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 56484 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.951 3.110 ? 1.200 ? ? ? ? 1263 97.500 ? ? ? ? 0.552 ? ? ? ? ? ? ? ? 4.900 0.552 ? ? ? 0.662 0.277 ? 1 1 ? ? ? ? ? ? ? ? ? ? ? 3.110 3.300 ? 2.000 ? ? ? ? 1236 100.000 ? ? ? ? 0.354 ? ? ? ? ? ? ? ? 6.500 0.354 ? ? ? 0.414 0.160 ? 2 1 ? ? ? ? ? ? ? ? ? ? ? 3.300 3.520 ? 2.900 ? ? ? ? 1183 99.900 ? ? ? ? 0.231 ? ? ? ? ? ? ? ? 6.500 0.231 ? ? ? 0.270 0.105 ? 3 1 ? ? ? ? ? ? ? ? ? ? ? 3.520 3.810 ? 3.500 ? ? ? ? 1092 100.000 ? ? ? ? 0.183 ? ? ? ? ? ? ? ? 6.500 0.183 ? ? ? 0.216 0.084 ? 4 1 ? ? ? ? ? ? ? ? ? ? ? 3.810 4.170 ? 4.400 ? ? ? ? 1006 100.000 ? ? ? ? 0.132 ? ? ? ? ? ? ? ? 6.500 0.132 ? ? ? 0.156 0.061 ? 5 1 ? ? ? ? ? ? ? ? ? ? ? 4.170 4.660 ? 5.700 ? ? ? ? 923 100.000 ? ? ? ? 0.102 ? ? ? ? ? ? ? ? 6.500 0.102 ? ? ? 0.121 0.047 ? 6 1 ? ? ? ? ? ? ? ? ? ? ? 4.660 5.380 ? 5.800 ? ? ? ? 813 100.000 ? ? ? ? 0.087 ? ? ? ? ? ? ? ? 6.500 0.087 ? ? ? 0.105 0.041 ? 7 1 ? ? ? ? ? ? ? ? ? ? ? 5.380 6.590 ? 6.200 ? ? ? ? 708 100.000 ? ? ? ? 0.085 ? ? ? ? ? ? ? ? 6.400 0.085 ? ? ? 0.104 0.041 ? 8 1 ? ? ? ? ? ? ? ? ? ? ? 6.590 9.330 ? 8.700 ? ? ? ? 567 100.000 ? ? ? ? 0.059 ? ? ? ? ? ? ? ? 6.000 0.059 ? ? ? 0.074 0.030 ? 9 1 ? ? ? ? ? ? ? ? ? ? ? 9.330 32.213 ? 9.400 ? ? ? ? 312 95.500 ? ? ? ? 0.053 ? ? ? ? ? ? ? ? 5.500 0.053 ? ? ? 0.075 0.032 ? 10 1 ? ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 234.610 _refine.B_iso_mean 63.3193 _refine.B_iso_min 22.110 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7UQ6 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9510 _refine.ls_d_res_low 32.2130 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9093 _refine.ls_number_reflns_R_free 434 _refine.ls_number_reflns_R_work 8659 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.4300 _refine.ls_percent_reflns_R_free 4.7700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2475 _refine.ls_R_factor_R_free 0.2648 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2466 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4MGM _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.8700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3900 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.9510 _refine_hist.d_res_low 32.2130 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1874 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 86 _refine_hist.pdbx_B_iso_mean_ligand 100.24 _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1849 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.9512 3.3779 . . 144 2794 99.0000 . . . 0.3312 0.0000 0.3107 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3779 4.2542 . . 145 2876 100.0000 . . . 0.2617 0.0000 0.2572 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.2542 32.2130 . . 145 2989 100.0000 . . . 0.2418 0.0000 0.2211 . . . . . . . . . . . # _struct.entry_id 7UQ6 _struct.title 'tRNA T-box antiterminator fusion, construct #4' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7UQ6 _struct_keywords.text 'tRNA, regulation, riboswitch, scaffold, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 3 ? U N N 3 ? V N N 3 ? W N N 3 ? X N N 3 ? Y N N 3 ? Z N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A C 2 P ? ? B GTP 1 B C 2 1_555 ? ? ? ? ? ? ? 1.591 ? ? metalc1 metalc ? ? A GTP 1 O1G ? ? ? 1_555 M BA . BA ? ? B GTP 1 B BA 112 1_555 ? ? ? ? ? ? ? 3.163 ? ? metalc2 metalc ? ? A GTP 1 O2G ? ? ? 1_555 M BA . BA ? ? B GTP 1 B BA 112 1_555 ? ? ? ? ? ? ? 2.721 ? ? metalc3 metalc ? ? A G 4 O6 ? ? ? 1_555 M BA . BA ? ? B G 4 B BA 112 1_555 ? ? ? ? ? ? ? 2.795 ? ? metalc4 metalc ? ? A U 8 OP1 ? ? ? 1_555 E BA . BA ? ? B U 8 B BA 104 1_555 ? ? ? ? ? ? ? 2.710 ? ? metalc5 metalc ? ? A A 9 OP2 ? ? ? 1_555 E BA . BA ? ? B A 9 B BA 104 1_555 ? ? ? ? ? ? ? 2.772 ? ? metalc6 metalc ? ? A A 9 OP1 ? ? ? 1_555 F BA . BA ? ? B A 9 B BA 105 1_555 ? ? ? ? ? ? ? 2.602 ? ? metalc7 metalc ? ? A A 9 OP1 ? ? ? 1_555 W K . K ? ? B A 9 B K 122 1_555 ? ? ? ? ? ? ? 2.737 ? ? metalc8 metalc ? ? A G 10 OP2 ? ? ? 1_555 F BA . BA ? ? B G 10 B BA 105 1_555 ? ? ? ? ? ? ? 3.287 ? ? metalc9 metalc ? ? A G 10 O6 ? ? ? 1_555 S K . K ? ? B G 10 B K 118 1_555 ? ? ? ? ? ? ? 3.300 ? ? metalc10 metalc ? ? A G 10 OP2 ? ? ? 1_555 W K . K ? ? B G 10 B K 122 1_555 ? ? ? ? ? ? ? 3.106 ? ? metalc11 metalc ? ? A U 11 OP2 ? ? ? 1_555 F BA . BA ? ? B U 11 B BA 105 1_555 ? ? ? ? ? ? ? 3.282 ? ? metalc12 metalc ? ? A U 12 OP2 ? ? ? 1_555 E BA . BA ? ? B U 12 B BA 104 1_555 ? ? ? ? ? ? ? 3.175 ? ? metalc13 metalc ? ? A A 14 OP2 ? ? ? 1_555 R K . K ? ? B A 14 B K 117 1_555 ? ? ? ? ? ? ? 2.672 ? ? metalc14 metalc ? ? A U 16 OP2 ? ? ? 1_555 D BA . BA ? ? B U 16 B BA 103 1_555 ? ? ? ? ? ? ? 2.699 ? ? metalc15 metalc ? ? A G 18 "O2'" ? ? ? 1_555 Q K . K ? ? B G 18 B K 116 1_555 ? ? ? ? ? ? ? 3.322 ? ? metalc16 metalc ? ? A U 19 OP1 ? ? ? 1_555 H BA . BA ? ? B U 19 B BA 107 1_555 ? ? ? ? ? ? ? 2.959 ? ? metalc17 metalc ? ? A G 21 OP2 ? ? ? 1_555 Z K . K ? ? B G 21 B K 125 1_555 ? ? ? ? ? ? ? 2.788 ? ? metalc18 metalc ? ? A G 30 O6 ? ? ? 1_555 U K . K ? ? B G 30 B K 120 1_555 ? ? ? ? ? ? ? 3.300 ? ? metalc19 metalc ? ? A G 32 O6 ? ? ? 1_555 J BA . BA ? ? B G 32 B BA 109 1_555 ? ? ? ? ? ? ? 2.812 ? ? metalc20 metalc ? ? A G 41 O6 ? ? ? 1_555 B BA . BA ? ? B G 41 B BA 101 1_555 ? ? ? ? ? ? ? 3.469 ? ? metalc21 metalc ? ? A G 42 O6 ? ? ? 1_555 B BA . BA ? ? B G 42 B BA 101 1_555 ? ? ? ? ? ? ? 2.610 ? ? metalc22 metalc ? ? A G 42 O6 ? ? ? 1_555 L BA . BA ? ? B G 42 B BA 111 1_555 ? ? ? ? ? ? ? 2.610 ? ? metalc23 metalc ? ? A G 48 "O3'" ? ? ? 1_555 T K . K ? ? B G 48 B K 119 1_555 ? ? ? ? ? ? ? 3.447 ? ? metalc24 metalc ? ? A G 49 O6 ? ? ? 1_555 J BA . BA ? ? B G 49 B BA 109 4_555 ? ? ? ? ? ? ? 3.401 ? ? metalc25 metalc ? ? A G 49 OP1 ? ? ? 1_555 T K . K ? ? B G 49 B K 119 1_555 ? ? ? ? ? ? ? 3.122 ? ? metalc26 metalc ? ? A G 54 O6 ? ? ? 1_555 O BA . BA ? ? B G 54 B BA 114 1_555 ? ? ? ? ? ? ? 3.380 ? ? metalc27 metalc ? ? A G 55 O6 ? ? ? 1_555 S K . K ? ? B G 55 B K 118 1_555 ? ? ? ? ? ? ? 3.410 ? ? metalc28 metalc ? ? A G 55 OP2 ? ? ? 1_555 Y K . K ? ? B G 55 B K 124 1_555 ? ? ? ? ? ? ? 2.821 ? ? metalc29 metalc ? ? A U 56 O4 ? ? ? 1_555 N BA . BA ? ? B U 56 B BA 113 1_555 ? ? ? ? ? ? ? 3.369 ? ? metalc30 metalc ? ? A U 56 O2 ? ? ? 1_555 S K . K ? ? B U 56 B K 118 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc31 metalc ? ? A G 60 O6 ? ? ? 1_555 I BA . BA ? ? B G 60 B BA 108 1_555 ? ? ? ? ? ? ? 2.690 ? ? metalc32 metalc ? ? A U 65 O4 ? ? ? 1_555 K BA . BA ? ? B U 65 B BA 110 1_555 ? ? ? ? ? ? ? 3.121 ? ? metalc33 metalc ? ? A U 66 O4 ? ? ? 1_555 C BA . BA ? ? B U 66 B BA 102 1_555 ? ? ? ? ? ? ? 2.855 ? ? metalc34 metalc ? ? A U 66 O4 ? ? ? 1_555 K BA . BA ? ? B U 66 B BA 110 1_555 ? ? ? ? ? ? ? 3.305 ? ? metalc35 metalc ? ? A G 70 O6 ? ? ? 1_555 D BA . BA ? ? B G 70 B BA 103 1_555 ? ? ? ? ? ? ? 3.322 ? ? metalc36 metalc ? ? A G 70 OP1 ? ? ? 1_555 H BA . BA ? ? B G 70 B BA 107 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc37 metalc ? ? A U 71 O4 ? ? ? 1_555 H BA . BA ? ? B U 71 B BA 107 1_555 ? ? ? ? ? ? ? 3.195 ? ? metalc38 metalc ? ? A U 76 O4 ? ? ? 1_555 I BA . BA ? ? B U 76 B BA 108 1_555 ? ? ? ? ? ? ? 3.243 ? ? metalc39 metalc ? ? A C 86 "O4'" ? ? ? 1_555 Q K . K ? ? B C 86 B K 116 6_555 ? ? ? ? ? ? ? 3.383 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A C 83 N3 ? ? B GTP 1 B C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A C 83 O2 ? ? B GTP 1 B C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A C 83 N4 ? ? B GTP 1 B C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 82 N1 ? ? B C 2 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 82 O6 ? ? B C 2 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 82 N2 ? ? B C 2 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 81 N3 ? ? B G 3 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 81 O2 ? ? B G 3 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 81 N4 ? ? B G 3 B C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 80 N3 ? ? B G 4 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 80 O2 ? ? B G 4 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 80 N4 ? ? B G 4 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 79 N3 ? ? B A 5 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 79 O4 ? ? B A 5 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 78 N3 ? ? B A 6 B U 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 78 O4 ? ? B A 6 B U 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 77 N3 ? ? B G 7 B C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 77 O2 ? ? B G 7 B C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 77 N4 ? ? B G 7 B C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? B U 8 B A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? B U 8 B A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 22 N6 ? ? B A 9 B A 22 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 24 N3 ? ? B G 10 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 24 O2 ? ? B G 10 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 24 N4 ? ? B G 10 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N7 ? ? ? 1_555 A G 55 N2 ? ? B G 10 B G 55 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog27 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 23 N1 ? ? B U 11 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 23 N6 ? ? B U 11 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 22 N1 ? ? B U 12 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 22 N6 ? ? B U 12 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 21 N1 ? ? B C 13 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 21 O6 ? ? B C 13 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 21 N2 ? ? B C 13 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 59 O2 ? ? B G 15 B C 59 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 59 N3 ? ? B G 15 B C 59 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A G 17 N2 ? ? ? 1_555 A U 66 O2 ? ? B G 17 B U 66 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 67 N3 ? ? B G 18 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 67 O2 ? ? B G 18 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 67 N4 ? ? B G 18 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 21 N7 ? ? ? 1_555 A C 57 N4 ? ? B G 21 B C 57 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog41 hydrog ? ? A A 25 N1 ? ? ? 1_555 A G 55 N1 ? ? B A 25 B G 55 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog42 hydrog ? ? A A 25 N6 ? ? ? 1_555 A G 55 O6 ? ? B A 25 B G 55 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog43 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 54 N1 ? ? B C 26 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 54 O6 ? ? B C 26 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 54 N2 ? ? B C 26 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 53 N1 ? ? B C 27 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 53 O6 ? ? B C 27 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 53 N2 ? ? B C 27 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 52 N3 ? ? B G 28 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 52 O2 ? ? B G 28 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 52 N4 ? ? B G 28 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 51 N3 ? ? B G 29 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 51 O2 ? ? B G 29 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 51 N4 ? ? B G 29 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 50 N3 ? ? B G 30 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 50 O2 ? ? B G 30 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 50 N4 ? ? B G 30 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 38 N3 ? ? ? 1_555 A G 49 N1 ? ? B C 38 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 38 N4 ? ? ? 1_555 A G 49 O6 ? ? B C 38 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 38 O2 ? ? ? 1_555 A G 49 N2 ? ? B C 38 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 39 N3 ? ? ? 1_555 A G 48 N1 ? ? B C 39 B G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 39 N4 ? ? ? 1_555 A G 48 O6 ? ? B C 39 B G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 39 O2 ? ? ? 1_555 A G 48 N2 ? ? B C 39 B G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 40 N1 ? ? ? 1_555 A U 47 N3 ? ? B A 40 B U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 40 N6 ? ? ? 1_555 A U 47 O4 ? ? B A 40 B U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 46 N3 ? ? B G 41 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 46 O2 ? ? B G 41 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 46 N4 ? ? B G 41 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 42 N2 ? ? ? 1_555 A A 45 N7 ? ? B G 42 B A 45 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog70 hydrog ? ? A G 60 N1 ? ? ? 1_555 A U 76 O2 ? ? B G 60 B U 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog71 hydrog ? ? A G 60 O6 ? ? ? 1_555 A U 76 N3 ? ? B G 60 B U 76 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog72 hydrog ? ? A C 61 N3 ? ? ? 1_555 A G 75 N1 ? ? B C 61 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 61 N4 ? ? ? 1_555 A G 75 O6 ? ? B C 61 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 61 O2 ? ? ? 1_555 A G 75 N2 ? ? B C 61 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 62 N1 ? ? ? 1_555 A C 74 N3 ? ? B G 62 B C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 62 N2 ? ? ? 1_555 A C 74 O2 ? ? B G 62 B C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 62 O6 ? ? ? 1_555 A C 74 N4 ? ? B G 62 B C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 63 N1 ? ? ? 1_555 A C 73 N3 ? ? B G 63 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 63 N2 ? ? ? 1_555 A C 73 O2 ? ? B G 63 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 63 O6 ? ? ? 1_555 A C 73 N4 ? ? B G 63 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 64 N1 ? ? ? 1_555 A C 72 N3 ? ? B G 64 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 64 N2 ? ? ? 1_555 A C 72 O2 ? ? B G 64 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 64 O6 ? ? ? 1_555 A C 72 N4 ? ? B G 64 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A U 65 N3 ? ? ? 1_555 A A 69 N7 ? ? B U 65 B A 69 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog85 hydrog ? ? A U 65 O2 ? ? ? 1_555 A A 69 N6 ? ? B U 65 B A 69 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 7UQ6 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.011290 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006053 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017529 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol BA C H K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP B . n A 1 2 C 2 2 2 C C B . n A 1 3 G 3 3 3 G G B . n A 1 4 G 4 4 4 G G B . n A 1 5 A 5 5 5 A A B . n A 1 6 A 6 6 6 A A B . n A 1 7 G 7 7 7 G G B . n A 1 8 U 8 8 8 U U B . n A 1 9 A 9 9 9 A A B . n A 1 10 G 10 10 10 G G B . n A 1 11 U 11 11 11 U U B . n A 1 12 U 12 12 12 U U B . n A 1 13 C 13 13 13 C C B . n A 1 14 A 14 14 14 A A B . n A 1 15 G 15 15 15 G G B . n A 1 16 U 16 16 16 U U B . n A 1 17 G 17 17 17 G G B . n A 1 18 G 18 18 18 G G B . n A 1 19 U 19 19 19 U U B . n A 1 20 A 20 20 20 A A B . n A 1 21 G 21 21 21 G G B . n A 1 22 A 22 22 22 A A B . n A 1 23 A 23 23 23 A A B . n A 1 24 C 24 24 24 C C B . n A 1 25 A 25 25 25 A A B . n A 1 26 C 26 26 26 C C B . n A 1 27 C 27 27 27 C C B . n A 1 28 G 28 28 28 G G B . n A 1 29 G 29 29 29 G G B . n A 1 30 G 30 30 30 G G B . n A 1 31 U 31 31 31 U U B . n A 1 32 G 32 32 32 G G B . n A 1 33 G 33 33 33 G G B . n A 1 34 A 34 34 34 A A B . n A 1 35 A 35 35 35 A A B . n A 1 36 C 36 36 36 C C B . n A 1 37 C 37 37 37 C C B . n A 1 38 C 38 38 38 C C B . n A 1 39 C 39 39 39 C C B . n A 1 40 A 40 40 40 A A B . n A 1 41 G 41 41 41 G G B . n A 1 42 G 42 42 42 G G B . n A 1 43 A 43 43 43 A A B . n A 1 44 A 44 44 44 A A B . n A 1 45 A 45 45 45 A A B . n A 1 46 C 46 46 46 C C B . n A 1 47 U 47 47 47 U U B . n A 1 48 G 48 48 48 G G B . n A 1 49 G 49 49 49 G G B . n A 1 50 C 50 50 50 C C B . n A 1 51 C 51 51 51 C C B . n A 1 52 C 52 52 52 C C B . n A 1 53 G 53 53 53 G G B . n A 1 54 G 54 54 54 G G B . n A 1 55 G 55 55 55 G G B . n A 1 56 U 56 56 56 U U B . n A 1 57 C 57 57 57 C C B . n A 1 58 G 58 58 58 G G B . n A 1 59 C 59 59 59 C C B . n A 1 60 G 60 60 60 G G B . n A 1 61 C 61 61 61 C C B . n A 1 62 G 62 62 62 G G B . n A 1 63 G 63 63 63 G G B . n A 1 64 G 64 64 64 G G B . n A 1 65 U 65 65 65 U U B . n A 1 66 U 66 66 66 U U B . n A 1 67 C 67 67 67 C C B . n A 1 68 G 68 68 68 G G B . n A 1 69 A 69 69 69 A A B . n A 1 70 G 70 70 70 G G B . n A 1 71 U 71 71 71 U U B . n A 1 72 C 72 72 72 C C B . n A 1 73 C 73 73 73 C C B . n A 1 74 C 74 74 74 C C B . n A 1 75 G 75 75 75 G G B . n A 1 76 U 76 76 76 U U B . n A 1 77 C 77 77 77 C C B . n A 1 78 U 78 78 78 U U B . n A 1 79 U 79 79 79 U U B . n A 1 80 C 80 80 80 C C B . n A 1 81 C 81 81 81 C C B . n A 1 82 G 82 82 82 G G B . n A 1 83 C 83 83 83 C C B . n A 1 84 U 84 84 84 U U B . n A 1 85 C 85 85 85 C C B . n A 1 86 C 86 86 86 C C B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email ak425@cornell.edu _pdbx_contact_author.name_first Ailong _pdbx_contact_author.name_last Ke _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5957-7822 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BA 1 101 1 BA BA B . C 2 BA 1 102 3 BA BA B . D 2 BA 1 103 8 BA BA B . E 2 BA 1 104 9 BA BA B . F 2 BA 1 105 10 BA BA B . G 2 BA 1 106 11 BA BA B . H 2 BA 1 107 12 BA BA B . I 2 BA 1 108 13 BA BA B . J 2 BA 1 109 14 BA BA B . K 2 BA 1 110 16 BA BA B . L 2 BA 1 111 17 BA BA B . M 2 BA 1 112 18 BA BA B . N 2 BA 1 113 19 BA BA B . O 2 BA 1 114 20 BA BA B . P 3 K 1 115 2 K K B . Q 3 K 1 116 3 K K B . R 3 K 1 117 4 K K B . S 3 K 1 118 5 K K B . T 3 K 1 119 6 K K B . U 3 K 1 120 7 K K B . V 3 K 1 121 8 K K B . W 3 K 1 122 9 K K B . X 3 K 1 123 10 K K B . Y 3 K 1 124 11 K K B . Z 3 K 1 125 12 K K B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1G ? A GTP 1 ? B GTP 1 ? 1_555 BA ? M BA . ? B BA 112 ? 1_555 O2G ? A GTP 1 ? B GTP 1 ? 1_555 48.9 ? 2 O1G ? A GTP 1 ? B GTP 1 ? 1_555 BA ? M BA . ? B BA 112 ? 1_555 O6 ? A G 4 ? B G 4 ? 1_555 154.6 ? 3 O2G ? A GTP 1 ? B GTP 1 ? 1_555 BA ? M BA . ? B BA 112 ? 1_555 O6 ? A G 4 ? B G 4 ? 1_555 155.9 ? 4 OP1 ? A U 8 ? B U 8 ? 1_555 BA ? E BA . ? B BA 104 ? 1_555 OP2 ? A A 9 ? B A 9 ? 1_555 59.9 ? 5 OP1 ? A U 8 ? B U 8 ? 1_555 BA ? E BA . ? B BA 104 ? 1_555 OP2 ? A U 12 ? B U 12 ? 1_555 149.3 ? 6 OP2 ? A A 9 ? B A 9 ? 1_555 BA ? E BA . ? B BA 104 ? 1_555 OP2 ? A U 12 ? B U 12 ? 1_555 127.7 ? 7 OP1 ? A A 9 ? B A 9 ? 1_555 BA ? F BA . ? B BA 105 ? 1_555 OP2 ? A G 10 ? B G 10 ? 1_555 75.8 ? 8 OP1 ? A A 9 ? B A 9 ? 1_555 BA ? F BA . ? B BA 105 ? 1_555 OP2 ? A U 11 ? B U 11 ? 1_555 85.8 ? 9 OP2 ? A G 10 ? B G 10 ? 1_555 BA ? F BA . ? B BA 105 ? 1_555 OP2 ? A U 11 ? B U 11 ? 1_555 57.4 ? 10 OP1 ? A A 9 ? B A 9 ? 1_555 K ? W K . ? B K 122 ? 1_555 OP2 ? A G 10 ? B G 10 ? 1_555 77.2 ? 11 O6 ? A G 10 ? B G 10 ? 1_555 K ? S K . ? B K 118 ? 1_555 O6 ? A G 55 ? B G 55 ? 1_555 94.9 ? 12 O6 ? A G 10 ? B G 10 ? 1_555 K ? S K . ? B K 118 ? 1_555 O2 ? A U 56 ? B U 56 ? 1_555 93.7 ? 13 O6 ? A G 55 ? B G 55 ? 1_555 K ? S K . ? B K 118 ? 1_555 O2 ? A U 56 ? B U 56 ? 1_555 89.9 ? 14 OP2 ? A U 16 ? B U 16 ? 1_555 BA ? D BA . ? B BA 103 ? 1_555 O6 ? A G 70 ? B G 70 ? 1_555 54.9 ? 15 "O2'" ? A G 18 ? B G 18 ? 1_555 K ? Q K . ? B K 116 ? 1_555 "O4'" ? A C 86 ? B C 86 ? 1_555 99.7 ? 16 OP1 ? A U 19 ? B U 19 ? 1_555 BA ? H BA . ? B BA 107 ? 1_555 OP1 ? A G 70 ? B G 70 ? 1_555 165.6 ? 17 OP1 ? A U 19 ? B U 19 ? 1_555 BA ? H BA . ? B BA 107 ? 1_555 O4 ? A U 71 ? B U 71 ? 1_555 99.7 ? 18 OP1 ? A G 70 ? B G 70 ? 1_555 BA ? H BA . ? B BA 107 ? 1_555 O4 ? A U 71 ? B U 71 ? 1_555 66.5 ? 19 O6 ? A G 32 ? B G 32 ? 1_555 BA ? J BA . ? B BA 109 ? 1_555 O6 ? A G 49 ? B G 49 ? 1_555 96.9 ? 20 O6 ? A G 41 ? B G 41 ? 1_555 BA ? B BA . ? B BA 101 ? 1_555 O6 ? A G 42 ? B G 42 ? 1_555 70.5 ? 21 "O3'" ? A G 48 ? B G 48 ? 1_555 K ? T K . ? B K 119 ? 1_555 OP1 ? A G 49 ? B G 49 ? 1_555 44.2 ? 22 O6 ? A G 60 ? B G 60 ? 1_555 BA ? I BA . ? B BA 108 ? 1_555 O4 ? A U 76 ? B U 76 ? 1_555 67.6 ? 23 O4 ? A U 65 ? B U 65 ? 1_555 BA ? K BA . ? B BA 110 ? 1_555 O4 ? A U 66 ? B U 66 ? 1_555 71.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-15 2 'Structure model' 1 1 2023-06-28 3 'Structure model' 1 2 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation.year' 8 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? 3.3.20 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14-3260 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 7UQ6 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 U _pdbx_validate_symm_contact.auth_seq_id_1 31 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O2 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 C _pdbx_validate_symm_contact.auth_seq_id_2 50 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.10 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BA BA BA N N 38 C OP3 O N N 39 C P P N N 40 C OP1 O N N 41 C OP2 O N N 42 C "O5'" O N N 43 C "C5'" C N N 44 C "C4'" C N R 45 C "O4'" O N N 46 C "C3'" C N S 47 C "O3'" O N N 48 C "C2'" C N R 49 C "O2'" O N N 50 C "C1'" C N R 51 C N1 N N N 52 C C2 C N N 53 C O2 O N N 54 C N3 N N N 55 C C4 C N N 56 C N4 N N N 57 C C5 C N N 58 C C6 C N N 59 C HOP3 H N N 60 C HOP2 H N N 61 C "H5'" H N N 62 C "H5''" H N N 63 C "H4'" H N N 64 C "H3'" H N N 65 C "HO3'" H N N 66 C "H2'" H N N 67 C "HO2'" H N N 68 C "H1'" H N N 69 C H41 H N N 70 C H42 H N N 71 C H5 H N N 72 C H6 H N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 GTP PG P N N 112 GTP O1G O N N 113 GTP O2G O N N 114 GTP O3G O N N 115 GTP O3B O N N 116 GTP PB P N N 117 GTP O1B O N N 118 GTP O2B O N N 119 GTP O3A O N N 120 GTP PA P N N 121 GTP O1A O N N 122 GTP O2A O N N 123 GTP "O5'" O N N 124 GTP "C5'" C N N 125 GTP "C4'" C N R 126 GTP "O4'" O N N 127 GTP "C3'" C N S 128 GTP "O3'" O N N 129 GTP "C2'" C N R 130 GTP "O2'" O N N 131 GTP "C1'" C N R 132 GTP N9 N Y N 133 GTP C8 C Y N 134 GTP N7 N Y N 135 GTP C5 C Y N 136 GTP C6 C N N 137 GTP O6 O N N 138 GTP N1 N N N 139 GTP C2 C N N 140 GTP N2 N N N 141 GTP N3 N N N 142 GTP C4 C Y N 143 GTP HOG2 H N N 144 GTP HOG3 H N N 145 GTP HOB2 H N N 146 GTP HOA2 H N N 147 GTP "H5'" H N N 148 GTP "H5''" H N N 149 GTP "H4'" H N N 150 GTP "H3'" H N N 151 GTP "HO3'" H N N 152 GTP "H2'" H N N 153 GTP "HO2'" H N N 154 GTP "H1'" H N N 155 GTP H8 H N N 156 GTP HN1 H N N 157 GTP HN21 H N N 158 GTP HN22 H N N 159 K K K N N 160 U OP3 O N N 161 U P P N N 162 U OP1 O N N 163 U OP2 O N N 164 U "O5'" O N N 165 U "C5'" C N N 166 U "C4'" C N R 167 U "O4'" O N N 168 U "C3'" C N S 169 U "O3'" O N N 170 U "C2'" C N R 171 U "O2'" O N N 172 U "C1'" C N R 173 U N1 N N N 174 U C2 C N N 175 U O2 O N N 176 U N3 N N N 177 U C4 C N N 178 U O4 O N N 179 U C5 C N N 180 U C6 C N N 181 U HOP3 H N N 182 U HOP2 H N N 183 U "H5'" H N N 184 U "H5''" H N N 185 U "H4'" H N N 186 U "H3'" H N N 187 U "HO3'" H N N 188 U "H2'" H N N 189 U "HO2'" H N N 190 U "H1'" H N N 191 U H3 H N N 192 U H5 H N N 193 U H6 H N N 194 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 U OP3 P sing N N 166 U OP3 HOP3 sing N N 167 U P OP1 doub N N 168 U P OP2 sing N N 169 U P "O5'" sing N N 170 U OP2 HOP2 sing N N 171 U "O5'" "C5'" sing N N 172 U "C5'" "C4'" sing N N 173 U "C5'" "H5'" sing N N 174 U "C5'" "H5''" sing N N 175 U "C4'" "O4'" sing N N 176 U "C4'" "C3'" sing N N 177 U "C4'" "H4'" sing N N 178 U "O4'" "C1'" sing N N 179 U "C3'" "O3'" sing N N 180 U "C3'" "C2'" sing N N 181 U "C3'" "H3'" sing N N 182 U "O3'" "HO3'" sing N N 183 U "C2'" "O2'" sing N N 184 U "C2'" "C1'" sing N N 185 U "C2'" "H2'" sing N N 186 U "O2'" "HO2'" sing N N 187 U "C1'" N1 sing N N 188 U "C1'" "H1'" sing N N 189 U N1 C2 sing N N 190 U N1 C6 sing N N 191 U C2 O2 doub N N 192 U C2 N3 sing N N 193 U N3 C4 sing N N 194 U N3 H3 sing N N 195 U C4 O4 doub N N 196 U C4 C5 sing N N 197 U C5 C6 doub N N 198 U C5 H5 sing N N 199 U C6 H6 sing N N 200 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7UQ6 'double helix' 7UQ6 'a-form double helix' 7UQ6 'parallel strands' 7UQ6 tetraloop 7UQ6 'bulge loop' 7UQ6 'mismatched base pair' 7UQ6 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 A C 83 1_555 -0.547 0.322 -0.810 -6.329 6.669 -8.649 1 B_GTP1:C83_B B 1 ? B 83 ? 19 1 1 A C 2 1_555 A G 82 1_555 0.180 -0.186 -0.411 0.682 4.032 -1.963 2 B_C2:G82_B B 2 ? B 82 ? 19 1 1 A G 3 1_555 A C 81 1_555 -0.190 -0.107 -0.038 -4.168 -6.240 0.290 3 B_G3:C81_B B 3 ? B 81 ? 19 1 1 A G 4 1_555 A C 80 1_555 -0.183 -0.130 -0.334 -3.985 -3.822 0.336 4 B_G4:C80_B B 4 ? B 80 ? 19 1 1 A A 5 1_555 A U 79 1_555 0.052 -0.102 -0.035 -4.387 -1.846 -1.392 5 B_A5:U79_B B 5 ? B 79 ? 20 1 1 A A 6 1_555 A U 78 1_555 0.073 -0.153 0.269 -2.925 -2.403 -1.237 6 B_A6:U78_B B 6 ? B 78 ? 20 1 1 A G 7 1_555 A C 77 1_555 -0.130 -0.163 0.371 3.893 -3.352 -0.923 7 B_G7:C77_B B 7 ? B 77 ? 19 1 1 A G 60 1_555 A U 76 1_555 -1.613 -0.396 -0.076 -2.796 -7.773 0.517 8 B_G60:U76_B B 60 ? B 76 ? 28 1 1 A C 61 1_555 A G 75 1_555 0.190 -0.169 -0.321 -2.463 -5.041 1.190 9 B_C61:G75_B B 61 ? B 75 ? 19 1 1 A G 62 1_555 A C 74 1_555 -0.176 -0.140 -0.384 -3.002 -1.051 0.354 10 B_G62:C74_B B 62 ? B 74 ? 19 1 1 A G 63 1_555 A C 73 1_555 -0.176 -0.174 -0.453 -1.129 -1.247 -0.302 11 B_G63:C73_B B 63 ? B 73 ? 19 1 1 A G 64 1_555 A C 72 1_555 -0.163 -0.105 -0.369 -11.212 -0.477 0.782 12 B_G64:C72_B B 64 ? B 72 ? 19 1 1 A U 65 1_555 A A 69 1_555 4.131 -2.044 0.772 4.401 8.856 -98.220 13 B_U65:A69_B B 65 ? B 69 ? 24 4 1 A U 66 1_555 A G 17 1_555 0.365 -5.902 0.331 22.084 7.804 -88.523 14 B_U66:G17_B B 66 ? B 17 ? ? 6 1 A C 50 1_555 A G 30 1_555 0.164 -0.109 -0.068 -1.509 -0.699 -0.573 15 B_C50:G30_B B 50 ? B 30 ? 19 1 1 A C 51 1_555 A G 29 1_555 0.168 -0.145 -0.082 0.975 5.003 0.110 16 B_C51:G29_B B 51 ? B 29 ? 19 1 1 A C 52 1_555 A G 28 1_555 0.189 -0.164 -0.426 5.500 2.159 0.178 17 B_C52:G28_B B 52 ? B 28 ? 19 1 1 A G 53 1_555 A C 27 1_555 -0.161 -0.121 0.066 -1.917 -2.702 1.285 18 B_G53:C27_B B 53 ? B 27 ? 19 1 1 A G 54 1_555 A C 26 1_555 -0.204 -0.217 0.714 -8.244 0.165 1.300 19 B_G54:C26_B B 54 ? B 26 ? 19 1 1 A G 55 1_555 A A 25 1_555 0.484 1.306 1.308 -26.982 3.058 -7.196 20 B_G55:A25_B B 55 ? B 25 ? 8 1 1 A G 10 1_555 A C 24 1_555 -0.226 -0.153 0.246 -1.980 -1.800 -0.187 21 B_G10:C24_B B 10 ? B 24 ? 19 1 1 A U 11 1_555 A A 23 1_555 -0.094 -0.095 0.243 -5.447 -1.630 -0.649 22 B_U11:A23_B B 11 ? B 23 ? 20 1 1 A U 12 1_555 A A 22 1_555 -0.040 -0.116 0.441 -0.622 1.062 -2.322 23 B_U12:A22_B B 12 ? B 22 ? 20 1 1 A C 13 1_555 A G 21 1_555 0.117 -0.232 0.789 -1.828 -5.453 -3.769 24 B_C13:G21_B B 13 ? B 21 ? 19 1 1 A A 14 1_555 A U 8 1_555 -3.975 -1.628 -0.226 2.671 1.773 -100.497 25 B_A14:U8_B B 14 ? B 8 ? 24 4 1 A G 15 1_555 A C 59 1_555 -0.059 3.478 0.145 6.172 1.290 161.587 26 B_G15:C59_B B 15 ? B 59 ? 22 2 1 A G 18 1_555 A C 67 1_555 -0.232 -0.253 0.384 -16.597 -18.186 -1.557 27 B_G18:C67_B B 18 ? B 67 ? 19 1 1 A C 38 1_555 A G 49 1_555 0.176 -0.132 0.369 2.427 2.454 1.074 28 B_C38:G49_B B 38 ? B 49 ? 19 1 1 A C 39 1_555 A G 48 1_555 0.202 -0.251 0.620 4.328 -0.021 -0.490 29 B_C39:G48_B B 39 ? B 48 ? 19 1 1 A A 40 1_555 A U 47 1_555 0.086 -0.087 -0.245 -7.949 0.874 -1.420 30 B_A40:U47_B B 40 ? B 47 ? 20 1 1 A G 41 1_555 A C 46 1_555 -0.187 -0.116 -0.062 -1.334 7.387 0.418 31 B_G41:C46_B B 41 ? B 46 ? 19 1 1 A G 42 1_555 A A 45 1_555 7.577 -4.936 1.857 13.633 -8.992 -15.574 32 B_G42:A45_B B 42 ? B 45 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 A C 83 1_555 A C 2 1_555 A G 82 1_555 -0.327 -1.332 3.143 -4.882 1.823 40.550 -2.100 -0.046 3.100 2.617 7.009 40.869 1 BB_GTP1C2:G82C83_BB B 1 ? B 83 ? B 2 ? B 82 ? 1 A C 2 1_555 A G 82 1_555 A G 3 1_555 A C 81 1_555 0.584 -1.781 3.180 -1.107 17.337 28.171 -5.559 -1.183 1.789 32.053 2.047 33.004 2 BB_C2G3:C81G82_BB B 2 ? B 82 ? B 3 ? B 81 ? 1 A G 3 1_555 A C 81 1_555 A G 4 1_555 A C 80 1_555 -0.088 -1.708 3.223 -0.793 3.945 31.675 -3.789 0.023 2.995 7.191 1.445 31.923 3 BB_G3G4:C80C81_BB B 3 ? B 81 ? B 4 ? B 80 ? 1 A G 4 1_555 A C 80 1_555 A A 5 1_555 A U 79 1_555 -0.584 -1.569 3.100 -2.160 4.887 33.615 -3.399 0.681 2.881 8.383 3.706 34.025 4 BB_G4A5:U79C80_BB B 4 ? B 80 ? B 5 ? B 79 ? 1 A A 5 1_555 A U 79 1_555 A A 6 1_555 A U 78 1_555 0.084 -1.513 3.061 -2.171 5.466 31.855 -3.577 -0.494 2.759 9.853 3.913 32.380 5 BB_A5A6:U78U79_BB B 5 ? B 79 ? B 6 ? B 78 ? 1 A A 6 1_555 A U 78 1_555 A G 7 1_555 A C 77 1_555 0.059 -1.275 3.035 0.498 5.300 32.594 -3.050 -0.029 2.799 9.366 -0.879 33.015 6 BB_A6G7:C77U78_BB B 6 ? B 78 ? B 7 ? B 77 ? 1 A G 7 1_555 A C 77 1_555 A G 60 1_555 A U 76 1_555 -0.165 -2.088 3.055 0.284 8.585 34.939 -4.437 0.302 2.488 14.038 -0.465 35.947 7 BB_G7G60:U76C77_BB B 7 ? B 77 ? B 60 ? B 76 ? 1 A G 60 1_555 A U 76 1_555 A C 61 1_555 A G 75 1_555 -0.525 -1.114 3.279 -0.603 2.039 41.744 -1.775 0.672 3.230 2.859 0.846 41.796 8 BB_G60C61:G75U76_BB B 60 ? B 76 ? B 61 ? B 75 ? 1 A C 61 1_555 A G 75 1_555 A G 62 1_555 A C 74 1_555 -0.010 -1.596 3.363 1.715 9.682 28.087 -5.040 0.362 2.672 19.219 -3.405 29.725 9 BB_C61G62:C74G75_BB B 61 ? B 75 ? B 62 ? B 74 ? 1 A G 62 1_555 A C 74 1_555 A G 63 1_555 A C 73 1_555 0.409 -1.836 3.350 -0.354 1.657 27.605 -4.247 -0.942 3.231 3.469 0.741 27.656 10 BB_G62G63:C73C74_BB B 62 ? B 74 ? B 63 ? B 73 ? 1 A G 63 1_555 A C 73 1_555 A G 64 1_555 A C 72 1_555 0.493 -2.136 3.319 0.075 9.985 35.716 -4.608 -0.766 2.649 15.900 -0.120 37.042 11 BB_G63G64:C72C73_BB B 63 ? B 73 ? B 64 ? B 72 ? 1 A G 64 1_555 A C 72 1_555 A U 65 1_555 A A 69 1_555 -2.247 -2.144 3.140 -2.553 4.685 87.579 -1.643 1.570 3.097 3.382 1.843 87.709 12 BB_G64U65:A69C72_BB B 64 ? B 72 ? B 65 ? B 69 ? 1 A U 65 1_555 A A 69 1_555 A U 66 1_555 A G 17 1_555 2.117 -1.949 3.474 3.605 -1.003 44.293 -2.475 -2.434 3.668 -1.327 -4.772 44.443 13 BB_U65U66:G17A69_BB B 65 ? B 69 ? B 66 ? B 17 ? 1 A C 50 1_555 A G 30 1_555 A C 51 1_555 A G 29 1_555 -0.413 -1.769 3.258 -2.473 6.775 31.741 -4.278 0.329 2.853 12.190 4.449 32.529 14 BB_C50C51:G29G30_BB B 50 ? B 30 ? B 51 ? B 29 ? 1 A C 51 1_555 A G 29 1_555 A C 52 1_555 A G 28 1_555 0.011 -1.894 3.070 1.724 5.844 32.205 -4.251 0.244 2.691 10.418 -3.073 32.761 15 BB_C51C52:G28G29_BB B 51 ? B 29 ? B 52 ? B 28 ? 1 A C 52 1_555 A G 28 1_555 A G 53 1_555 A C 27 1_555 0.647 -2.040 3.367 -0.888 7.381 27.007 -5.869 -1.537 2.703 15.436 1.856 27.993 16 BB_C52G53:C27G28_BB B 52 ? B 28 ? B 53 ? B 27 ? 1 A G 53 1_555 A C 27 1_555 A G 54 1_555 A C 26 1_555 0.542 -2.197 3.268 -3.441 2.240 33.935 -4.081 -1.450 3.053 3.821 5.869 34.176 17 BB_G53G54:C26C27_BB B 53 ? B 27 ? B 54 ? B 26 ? 1 A G 54 1_555 A C 26 1_555 A G 55 1_555 A A 25 1_555 -0.136 -2.586 3.658 6.826 6.059 37.280 -4.738 1.108 3.143 9.308 -10.486 38.342 18 BB_G54G55:A25C26_BB B 54 ? B 26 ? B 55 ? B 25 ? 1 A G 55 1_555 A A 25 1_555 A G 10 1_555 A C 24 1_555 -2.161 -2.991 2.608 19.776 0.030 46.980 -3.490 3.462 1.629 0.036 -23.621 50.754 19 BB_G55G10:C24A25_BB B 55 ? B 25 ? B 10 ? B 24 ? 1 A G 10 1_555 A C 24 1_555 A U 11 1_555 A A 23 1_555 -0.537 -1.788 3.243 -0.905 2.699 34.029 -3.460 0.775 3.109 4.601 1.544 34.144 20 BB_G10U11:A23C24_BB B 10 ? B 24 ? B 11 ? B 23 ? 1 A U 11 1_555 A A 23 1_555 A U 12 1_555 A A 22 1_555 0.226 -1.198 3.155 0.351 5.720 36.773 -2.591 -0.310 2.945 9.000 -0.552 37.202 21 BB_U11U12:A22A23_BB B 11 ? B 23 ? B 12 ? B 22 ? 1 A U 12 1_555 A A 22 1_555 A C 13 1_555 A G 21 1_555 0.814 -1.887 3.185 1.388 6.214 30.858 -4.547 -1.260 2.794 11.524 -2.575 31.492 22 BB_U12C13:G21A22_BB B 12 ? B 22 ? B 13 ? B 21 ? 1 A C 13 1_555 A G 21 1_555 A A 14 1_555 A U 8 1_555 -2.106 -0.441 3.122 2.323 -6.698 61.246 -0.133 2.160 3.077 -6.551 -2.272 61.616 23 BB_C13A14:U8G21_BB B 13 ? B 21 ? B 14 ? B 8 ? 1 A A 14 1_555 A U 8 1_555 A G 15 1_555 A C 59 1_555 2.443 -2.668 3.332 -0.663 4.357 -70.409 2.151 2.091 3.491 -3.775 -0.575 -70.529 24 BB_A14G15:C59U8_BB B 14 ? B 8 ? B 15 ? B 59 ? 1 A C 38 1_555 A G 49 1_555 A C 39 1_555 A G 48 1_555 -0.544 -1.992 3.177 -4.487 12.192 34.600 -4.608 0.322 2.412 19.661 7.236 36.888 25 BB_C38C39:G48G49_BB B 38 ? B 49 ? B 39 ? B 48 ? 1 A C 39 1_555 A G 48 1_555 A A 40 1_555 A U 47 1_555 -0.373 -1.992 3.083 7.103 18.176 34.198 -4.688 1.228 1.739 28.242 -11.037 39.229 26 BB_C39A40:U47G48_BB B 39 ? B 48 ? B 40 ? B 47 ? 1 A A 40 1_555 A U 47 1_555 A G 41 1_555 A C 46 1_555 0.315 -1.692 3.085 -2.268 4.124 30.198 -3.951 -1.004 2.804 7.855 4.321 30.555 27 BB_A40G41:C46U47_BB B 40 ? B 47 ? B 41 ? B 46 ? 1 A G 41 1_555 A C 46 1_555 A G 42 1_555 A A 45 1_555 -2.491 -0.568 2.702 -2.628 11.357 56.458 -1.099 2.470 2.657 11.865 2.746 57.552 28 BB_G41G42:A45C46_BB B 41 ? B 46 ? B 42 ? B 45 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM118174 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM116632 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BARIUM ION' BA 3 'POTASSIUM ION' K # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4MGM _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #