data_7V3T # _entry.id 7V3T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7V3T pdb_00007v3t 10.2210/pdb7v3t/pdb WWPDB D_1300023933 ? ? BMRB 36436 ? 10.13018/BMR36436 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-09-28 2 'Structure model' 1 1 2022-12-21 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7V3T _pdbx_database_status.recvd_initial_deposition_date 2021-08-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of thrombin binding aptamer G-quadruplex bound a self-adaptive small molecule with rotated ligands' _pdbx_database_related.db_id 36436 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email liuwting@mail2.sysu.edu.cn _pdbx_contact_author.name_first Zong-Wan _pdbx_contact_author.name_last Mao _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7131-1154 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, W.' 1 0000-0003-1461-3740 'Zhu, B.C.' 2 0000-0003-4144-6191 'Mao, Z.W.' 3 0000-0001-7131-1154 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-6520 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 8371 _citation.page_last 8379 _citation.title 'Solution structure of a thrombin binding aptamer complex with a non-planar platinum(ii) compound.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/d2sc01196d _citation.pdbx_database_id_PubMed 35919711 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhu, B.C.' 1 ? primary 'He, J.' 2 ? primary 'Xia, X.Y.' 3 ? primary 'Jiang, J.' 4 ? primary 'Liu, W.' 5 0000-0003-1461-3740 primary 'Liu, L.Y.' 6 0000-0001-9467-5014 primary 'Liang, B.B.' 7 ? primary 'Yao, H.G.' 8 ? primary 'Ke, Z.' 9 0000-0001-9064-8051 primary 'Xia, W.' 10 0000-0001-6480-3265 primary 'Mao, Z.W.' 11 0000-0001-7131-1154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;TBA G4 DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3') ; 4743.051 1 ? ? ? ? 2 non-polymer syn ;11,13-bis(fluoranyl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-7$l^{4}-aza-8$l^{4}-platinatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene ; 703.623 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGTTGGTGTGGTTGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;11,13-bis(fluoranyl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-7$l^{4}-aza-8$l^{4}-platinatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene ; _pdbx_entity_nonpoly.comp_id 5L1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DT n 1 10 DG n 1 11 DG n 1 12 DT n 1 13 DT n 1 14 DG n 1 15 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 15 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5L1 non-polymer . ;11,13-bis(fluoranyl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-7$l^{4}-aza-8$l^{4}-platinatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene ; ? 'C29 H24 F2 N7 Pt' 703.623 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 5L1 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 16 _pdbx_nonpoly_scheme.pdb_mon_id 5L1 _pdbx_nonpoly_scheme.auth_mon_id PT _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7V3T _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7V3T _struct.title 'Solution structure of thrombin binding aptamer G-quadruplex bound a self-adaptive small molecule with rotated ligands' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7V3T _struct_keywords.text 'G-quadruplex, platinum compound, thrombin binding aptamer, DNA-ligand complex structure, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7V3T _struct_ref.pdbx_db_accession 7V3T _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7V3T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 15 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7V3T _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 15 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'mass spectrometry' ? 2 1 'NMR Distance Restraints' ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 6 O6 ? ? A DG 1 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 6 N7 ? ? A DG 1 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 15 N2 ? ? A DG 1 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 15 N1 ? ? A DG 1 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 5 N2 ? ? A DG 2 A DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 5 N1 ? ? A DG 2 A DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 2 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 2 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 11 N2 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 11 N1 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 10 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 10 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 11 N7 ? ? ? 1_555 A DG 14 N2 ? ? A DG 11 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 11 O6 ? ? ? 1_555 A DG 14 N1 ? ? A DG 11 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.549 1.496 0.053 0.006 N 2 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.537 1.496 0.041 0.006 N 3 1 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.549 1.496 0.053 0.006 N 4 1 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.544 1.496 0.048 0.006 N 5 1 "C2'" A DT 12 ? ? "C1'" A DT 12 ? ? 1.587 1.519 0.068 0.010 N 6 1 "C1'" A DT 12 ? ? N1 A DT 12 ? ? 1.582 1.488 0.094 0.013 N 7 1 C5 A DT 12 ? ? C7 A DT 12 ? ? 1.532 1.496 0.036 0.006 N 8 1 P A DT 13 ? ? "O5'" A DT 13 ? ? 1.667 1.593 0.074 0.010 N 9 1 "C5'" A DT 13 ? ? "C4'" A DT 13 ? ? 1.601 1.512 0.089 0.007 N 10 1 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? 1.492 1.420 0.072 0.011 N 11 1 "C5'" A DG 14 ? ? "C4'" A DG 14 ? ? 1.557 1.512 0.045 0.007 N 12 2 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.548 1.496 0.052 0.006 N 13 2 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.537 1.496 0.041 0.006 N 14 2 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.548 1.496 0.052 0.006 N 15 2 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.543 1.496 0.047 0.006 N 16 2 C5 A DT 12 ? ? C7 A DT 12 ? ? 1.532 1.496 0.036 0.006 N 17 3 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.548 1.496 0.052 0.006 N 18 3 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.538 1.496 0.042 0.006 N 19 3 C8 A DG 5 ? ? N9 A DG 5 ? ? 1.331 1.374 -0.043 0.007 N 20 3 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.549 1.496 0.053 0.006 N 21 3 C5 A DT 12 ? ? C7 A DT 12 ? ? 1.534 1.496 0.038 0.006 N 22 3 "C5'" A DT 13 ? ? "C4'" A DT 13 ? ? 1.568 1.512 0.056 0.007 N 23 4 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.548 1.496 0.052 0.006 N 24 4 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.538 1.496 0.042 0.006 N 25 4 C8 A DG 5 ? ? N9 A DG 5 ? ? 1.331 1.374 -0.043 0.007 N 26 4 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.549 1.496 0.053 0.006 N 27 4 C5 A DT 12 ? ? C7 A DT 12 ? ? 1.534 1.496 0.038 0.006 N 28 4 P A DT 13 ? ? "O5'" A DT 13 ? ? 1.654 1.593 0.061 0.010 N 29 4 "C5'" A DT 13 ? ? "C4'" A DT 13 ? ? 1.568 1.512 0.056 0.007 N 30 5 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.548 1.496 0.052 0.006 N 31 5 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.538 1.496 0.042 0.006 N 32 5 C8 A DG 5 ? ? N9 A DG 5 ? ? 1.331 1.374 -0.043 0.007 N 33 5 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.548 1.496 0.052 0.006 N 34 5 C5 A DT 12 ? ? C7 A DT 12 ? ? 1.534 1.496 0.038 0.006 N 35 5 "C5'" A DT 13 ? ? "C4'" A DT 13 ? ? 1.571 1.512 0.059 0.007 N 36 6 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.548 1.496 0.052 0.006 N 37 6 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.539 1.496 0.043 0.006 N 38 6 C8 A DG 5 ? ? N9 A DG 5 ? ? 1.331 1.374 -0.043 0.007 N 39 6 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.548 1.496 0.052 0.006 N 40 6 C5 A DT 12 ? ? C7 A DT 12 ? ? 1.534 1.496 0.038 0.006 N 41 6 "C5'" A DT 13 ? ? "C4'" A DT 13 ? ? 1.572 1.512 0.060 0.007 N 42 7 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.549 1.496 0.053 0.006 N 43 7 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.538 1.496 0.042 0.006 N 44 7 C8 A DG 5 ? ? N9 A DG 5 ? ? 1.331 1.374 -0.043 0.007 N 45 7 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.548 1.496 0.052 0.006 N 46 7 C5 A DT 12 ? ? C7 A DT 12 ? ? 1.534 1.496 0.038 0.006 N 47 7 "C5'" A DT 13 ? ? "C4'" A DT 13 ? ? 1.573 1.512 0.061 0.007 N 48 8 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.548 1.496 0.052 0.006 N 49 8 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.537 1.496 0.041 0.006 N 50 8 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.548 1.496 0.052 0.006 N 51 8 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.544 1.496 0.048 0.006 N 52 8 C5 A DT 12 ? ? C7 A DT 12 ? ? 1.534 1.496 0.038 0.006 N 53 8 "C5'" A DT 13 ? ? "C4'" A DT 13 ? ? 1.568 1.512 0.056 0.007 N 54 8 "C5'" A DG 14 ? ? "C4'" A DG 14 ? ? 1.554 1.512 0.042 0.007 N 55 9 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.548 1.496 0.052 0.006 N 56 9 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.537 1.496 0.041 0.006 N 57 9 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.549 1.496 0.053 0.006 N 58 9 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.544 1.496 0.048 0.006 N 59 9 "C1'" A DT 12 ? ? N1 A DT 12 ? ? 1.573 1.488 0.085 0.013 N 60 9 C5 A DT 12 ? ? C7 A DT 12 ? ? 1.534 1.496 0.038 0.006 N 61 9 P A DT 13 ? ? "O5'" A DT 13 ? ? 1.659 1.593 0.066 0.010 N 62 9 "C5'" A DT 13 ? ? "C4'" A DT 13 ? ? 1.592 1.512 0.080 0.007 N 63 10 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.548 1.496 0.052 0.006 N 64 10 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.538 1.496 0.042 0.006 N 65 10 C8 A DG 5 ? ? N9 A DG 5 ? ? 1.331 1.374 -0.043 0.007 N 66 10 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.548 1.496 0.052 0.006 N 67 10 C5 A DT 12 ? ? C7 A DT 12 ? ? 1.535 1.496 0.039 0.006 N 68 10 "C5'" A DT 13 ? ? "C4'" A DT 13 ? ? 1.575 1.512 0.063 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.10 108.30 2.80 0.30 N 2 1 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.44 113.10 3.34 0.50 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.94 108.30 3.64 0.30 N 4 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.17 108.30 2.87 0.30 N 5 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.84 108.30 4.54 0.30 N 6 1 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.40 113.10 3.30 0.50 N 7 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.14 108.30 2.84 0.30 N 8 1 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.57 113.10 3.47 0.50 N 9 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.96 108.30 2.66 0.30 N 10 1 C5 A DG 8 ? ? N7 A DG 8 ? ? C8 A DG 8 ? ? 100.97 104.30 -3.33 0.50 N 11 1 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.61 113.10 4.51 0.50 N 12 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 113.21 108.30 4.91 0.30 N 13 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.57 122.90 -4.33 0.60 N 14 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.81 108.30 3.51 0.30 N 15 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.23 108.30 3.93 0.30 N 16 1 C5 A DG 11 ? ? N7 A DG 11 ? ? C8 A DG 11 ? ? 101.02 104.30 -3.28 0.50 N 17 1 N7 A DG 11 ? ? C8 A DG 11 ? ? N9 A DG 11 ? ? 116.73 113.10 3.63 0.50 N 18 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.57 108.30 4.27 0.30 N 19 1 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.35 108.30 2.05 0.30 N 20 1 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.58 108.30 3.28 0.30 N 21 1 N7 A DG 15 ? ? C8 A DG 15 ? ? N9 A DG 15 ? ? 116.38 113.10 3.28 0.50 N 22 1 C8 A DG 15 ? ? N9 A DG 15 ? ? C4 A DG 15 ? ? 103.93 106.40 -2.47 0.40 N 23 2 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.17 108.30 2.87 0.30 N 24 2 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.39 113.10 3.29 0.50 N 25 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.58 108.30 2.28 0.30 N 26 2 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.10 113.10 3.00 0.50 N 27 2 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.09 108.30 2.79 0.30 N 28 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.87 108.30 3.57 0.30 N 29 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 114.22 108.30 5.92 0.30 N 30 2 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.33 113.10 3.23 0.50 N 31 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.85 108.30 3.55 0.30 N 32 2 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.69 113.10 3.59 0.50 N 33 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.92 108.30 2.62 0.30 N 34 2 C5 A DG 8 ? ? N7 A DG 8 ? ? C8 A DG 8 ? ? 100.85 104.30 -3.45 0.50 N 35 2 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.71 113.10 4.61 0.50 N 36 2 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.56 108.30 4.26 0.30 N 37 2 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.57 122.90 -4.33 0.60 N 38 2 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.42 108.30 4.12 0.30 N 39 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.52 108.30 2.22 0.30 N 40 2 C5 A DG 11 ? ? N7 A DG 11 ? ? C8 A DG 11 ? ? 101.08 104.30 -3.22 0.50 N 41 2 N7 A DG 11 ? ? C8 A DG 11 ? ? N9 A DG 11 ? ? 116.62 113.10 3.52 0.50 N 42 2 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 117.65 108.30 9.35 0.30 N 43 2 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 112.96 108.30 4.66 0.30 N 44 2 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.52 108.30 4.22 0.30 N 45 2 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.02 108.30 2.72 0.30 N 46 2 N7 A DG 15 ? ? C8 A DG 15 ? ? N9 A DG 15 ? ? 116.21 113.10 3.11 0.50 N 47 2 C8 A DG 15 ? ? N9 A DG 15 ? ? C4 A DG 15 ? ? 104.00 106.40 -2.40 0.40 N 48 3 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.57 108.30 3.27 0.30 N 49 3 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.63 113.10 3.53 0.50 N 50 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.98 108.30 2.68 0.30 N 51 3 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.44 113.10 3.34 0.50 N 52 3 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.15 108.30 2.85 0.30 N 53 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.80 108.30 2.50 0.30 N 54 3 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.83 108.30 5.53 0.30 N 55 3 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.76 113.10 3.66 0.50 N 56 3 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.71 108.30 2.41 0.30 N 57 3 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 117.09 113.10 3.99 0.50 N 58 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.19 108.30 2.89 0.30 N 59 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.40 108.30 2.10 0.30 N 60 3 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 116.72 113.10 3.62 0.50 N 61 3 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.16 108.30 3.86 0.30 N 62 3 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.33 122.90 -4.57 0.60 N 63 3 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.04 108.30 3.74 0.30 N 64 3 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.30 108.30 2.00 0.30 N 65 3 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 118.68 108.30 10.38 0.30 N 66 3 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.67 108.30 3.37 0.30 N 67 3 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.46 122.90 -4.44 0.60 N 68 3 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 111.22 108.30 2.92 0.30 N 69 3 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.07 108.30 2.77 0.30 N 70 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.82 108.30 3.52 0.30 N 71 4 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.58 113.10 3.48 0.50 N 72 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.34 108.30 3.04 0.30 N 73 4 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.42 113.10 3.32 0.50 N 74 4 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.64 108.30 3.34 0.30 N 75 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.89 108.30 3.59 0.30 N 76 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.98 108.30 3.68 0.30 N 77 4 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.77 113.10 3.67 0.50 N 78 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.38 108.30 2.08 0.30 N 79 4 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 117.11 113.10 4.01 0.50 N 80 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.93 108.30 2.63 0.30 N 81 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.21 108.30 1.91 0.30 N 82 4 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 116.68 113.10 3.58 0.50 N 83 4 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.39 108.30 3.09 0.30 N 84 4 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.28 122.90 -4.62 0.60 N 85 4 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.29 108.30 2.99 0.30 N 86 4 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 120.22 108.30 11.92 0.30 N 87 4 "C3'" A DT 12 ? ? "O3'" A DT 12 ? ? P A DT 13 ? ? 127.39 119.70 7.69 1.20 Y 88 4 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.88 108.30 3.58 0.30 N 89 4 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.52 122.90 -4.38 0.60 N 90 4 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 111.26 108.30 2.96 0.30 N 91 4 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 110.83 108.30 2.53 0.30 N 92 5 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.05 108.30 3.75 0.30 N 93 5 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.65 113.10 3.55 0.50 N 94 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.51 108.30 3.21 0.30 N 95 5 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.44 113.10 3.34 0.50 N 96 5 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.10 108.30 2.80 0.30 N 97 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.16 108.30 2.86 0.30 N 98 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.79 108.30 3.49 0.30 N 99 5 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.73 113.10 3.63 0.50 N 100 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.54 108.30 2.24 0.30 N 101 5 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 117.09 113.10 3.99 0.50 N 102 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.09 108.30 2.79 0.30 N 103 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.11 108.30 1.81 0.30 N 104 5 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 116.65 113.10 3.55 0.50 N 105 5 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.23 108.30 3.93 0.30 N 106 5 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.30 122.90 -4.60 0.60 N 107 5 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 113.86 108.30 5.56 0.30 N 108 5 N7 A DG 10 ? ? C8 A DG 10 ? ? N9 A DG 10 ? ? 116.11 113.10 3.01 0.50 N 109 5 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.68 108.30 2.38 0.30 N 110 5 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 120.29 108.30 11.99 0.30 N 111 5 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 113.03 108.30 4.73 0.30 N 112 5 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.51 122.90 -4.39 0.60 N 113 5 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.43 108.30 2.13 0.30 N 114 5 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 110.31 108.30 2.01 0.30 N 115 6 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.95 108.30 2.65 0.30 N 116 6 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.57 113.10 3.47 0.50 N 117 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.45 108.30 2.15 0.30 N 118 6 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.52 113.10 3.42 0.50 N 119 6 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.84 108.30 2.54 0.30 N 120 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.50 108.30 3.20 0.30 N 121 6 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 114.20 108.30 5.90 0.30 N 122 6 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.69 113.10 3.59 0.50 N 123 6 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.07 108.30 2.77 0.30 N 124 6 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 117.09 113.10 3.99 0.50 N 125 6 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.08 108.30 2.78 0.30 N 126 6 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 116.68 113.10 3.58 0.50 N 127 6 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 114.33 108.30 6.03 0.30 N 128 6 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.31 122.90 -4.59 0.60 N 129 6 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.34 108.30 4.04 0.30 N 130 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.70 108.30 3.40 0.30 N 131 6 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.32 108.30 2.02 0.30 N 132 6 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 110.34 108.30 2.04 0.30 N 133 6 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.63 122.90 -4.27 0.60 N 134 6 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.81 108.30 4.51 0.30 N 135 6 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.73 108.30 3.43 0.30 N 136 7 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.71 108.30 2.41 0.30 N 137 7 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.65 113.10 3.55 0.50 N 138 7 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.02 108.30 2.72 0.30 N 139 7 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.47 113.10 3.37 0.50 N 140 7 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.14 108.30 2.84 0.30 N 141 7 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.06 108.30 2.76 0.30 N 142 7 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 115.68 108.30 7.38 0.30 N 143 7 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.71 113.10 3.61 0.50 N 144 7 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.28 108.30 1.98 0.30 N 145 7 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 117.09 113.10 3.99 0.50 N 146 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.25 108.30 2.95 0.30 N 147 7 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 116.69 113.10 3.59 0.50 N 148 7 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.97 108.30 3.67 0.30 N 149 7 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.27 122.90 -4.63 0.60 N 150 7 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 113.46 108.30 5.16 0.30 N 151 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.47 108.30 2.17 0.30 N 152 7 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 120.14 108.30 11.84 0.30 N 153 7 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 110.64 108.30 2.34 0.30 N 154 7 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.54 122.90 -4.36 0.60 N 155 7 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 111.10 108.30 2.80 0.30 N 156 7 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.09 108.30 2.79 0.30 N 157 8 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.13 108.30 2.83 0.30 N 158 8 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.41 113.10 3.31 0.50 N 159 8 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.34 108.30 3.04 0.30 N 160 8 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.17 108.30 2.87 0.30 N 161 8 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.53 108.30 2.23 0.30 N 162 8 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.55 108.30 5.25 0.30 N 163 8 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.34 113.10 3.24 0.50 N 164 8 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 113.37 108.30 5.07 0.30 N 165 8 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.59 113.10 3.49 0.50 N 166 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.38 108.30 4.08 0.30 N 167 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.44 108.30 2.14 0.30 N 168 8 C5 A DG 8 ? ? N7 A DG 8 ? ? C8 A DG 8 ? ? 100.88 104.30 -3.42 0.50 N 169 8 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.69 113.10 4.59 0.50 N 170 8 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.54 108.30 3.24 0.30 N 171 8 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.61 122.90 -4.29 0.60 N 172 8 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.70 108.30 4.40 0.30 N 173 8 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.50 108.30 3.20 0.30 N 174 8 C2 A DG 11 ? ? N3 A DG 11 ? ? C4 A DG 11 ? ? 115.33 111.90 3.43 0.50 N 175 8 C5 A DG 11 ? ? N7 A DG 11 ? ? C8 A DG 11 ? ? 101.05 104.30 -3.25 0.50 N 176 8 N7 A DG 11 ? ? C8 A DG 11 ? ? N9 A DG 11 ? ? 116.66 113.10 3.56 0.50 N 177 8 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 111.11 108.30 2.81 0.30 N 178 8 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 110.29 108.30 1.99 0.30 N 179 8 N7 A DG 15 ? ? C8 A DG 15 ? ? N9 A DG 15 ? ? 116.29 113.10 3.19 0.50 N 180 8 C8 A DG 15 ? ? N9 A DG 15 ? ? C4 A DG 15 ? ? 103.97 106.40 -2.43 0.40 N 181 9 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.15 108.30 2.85 0.30 N 182 9 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.44 113.10 3.34 0.50 N 183 9 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.09 108.30 2.79 0.30 N 184 9 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.03 108.30 2.73 0.30 N 185 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.23 108.30 1.93 0.30 N 186 9 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.31 108.30 3.01 0.30 N 187 9 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.32 113.10 3.22 0.50 N 188 9 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.20 108.30 2.90 0.30 N 189 9 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 116.65 113.10 3.55 0.50 N 190 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.16 108.30 2.86 0.30 N 191 9 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.12 108.30 2.82 0.30 N 192 9 C5 A DG 8 ? ? N7 A DG 8 ? ? C8 A DG 8 ? ? 100.86 104.30 -3.44 0.50 N 193 9 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 117.67 113.10 4.57 0.50 N 194 9 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.81 108.30 4.51 0.30 N 195 9 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.56 122.90 -4.34 0.60 N 196 9 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.92 108.30 4.62 0.30 N 197 9 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.18 108.30 2.88 0.30 N 198 9 C5 A DG 11 ? ? N7 A DG 11 ? ? C8 A DG 11 ? ? 101.01 104.30 -3.29 0.50 N 199 9 N7 A DG 11 ? ? C8 A DG 11 ? ? N9 A DG 11 ? ? 116.69 113.10 3.59 0.50 N 200 9 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.80 108.30 3.50 0.30 N 201 9 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.56 108.30 4.26 0.30 N 202 9 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 110.89 108.30 2.59 0.30 N 203 9 N7 A DG 15 ? ? C8 A DG 15 ? ? N9 A DG 15 ? ? 116.26 113.10 3.16 0.50 N 204 10 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.97 108.30 2.67 0.30 N 205 10 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.66 113.10 3.56 0.50 N 206 10 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.69 108.30 2.39 0.30 N 207 10 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 116.44 113.10 3.34 0.50 N 208 10 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.23 108.30 2.93 0.30 N 209 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.71 108.30 2.41 0.30 N 210 10 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 115.37 108.30 7.07 0.30 N 211 10 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.80 113.10 3.70 0.50 N 212 10 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.85 108.30 2.55 0.30 N 213 10 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 117.09 113.10 3.99 0.50 N 214 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.24 108.30 2.94 0.30 N 215 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.51 108.30 2.21 0.30 N 216 10 N7 A DG 8 ? ? C8 A DG 8 ? ? N9 A DG 8 ? ? 116.72 113.10 3.62 0.50 N 217 10 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.31 108.30 4.01 0.30 N 218 10 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.33 122.90 -4.57 0.60 N 219 10 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.97 108.30 3.67 0.30 N 220 10 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.92 108.30 2.62 0.30 N 221 10 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 121.29 108.30 12.99 0.30 N 222 10 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.01 108.30 2.71 0.30 N 223 10 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.43 122.90 -4.47 0.60 N 224 10 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.73 108.30 4.43 0.30 N 225 10 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.68 108.30 3.38 0.30 N # _pdbx_entry_details.entry_id 7V3T _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_nmr_ensemble.entry_id 7V3T _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7V3T _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1 mM TBA G4, 1 mM Pt compound, 75 mM potassium chloride, 25 mM potassium phosphate, 90% H2O/10% D2O' '90% H2O/10% D2O' Sample_1 solution ? 2 '1 mM TBA G4, 1 mM Pt compound, 75 mM potassium chloride, 25 mM potassium phosphate, 100% D2O' '100% D2O' Sample_2 solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'TBA G4' 1 ? mM 'natural abundance' 1 'Pt compound' 1 ? mM 'natural abundance' 1 'potassium chloride' 75 ? mM 'natural abundance' 1 'potassium phosphate' 25 ? mM 'natural abundance' 2 'TBA G4' 1 ? mM 'natural abundance' 2 'Pt compound' 1 ? mM 'natural abundance' 2 'potassium chloride' 75 ? mM 'natural abundance' 2 'potassium phosphate' 25 ? mM 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 25C _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY' 2 anisotropic 2 1 1 '2D TOCSY' 1 anisotropic 3 1 2 '2D NOESY' 2 anisotropic 4 1 2 '2D TOCSY' 1 anisotropic 5 1 2 '2D COSY' 1 anisotropic # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 7V3T 'DGSA-distance geometry simulated annealing' ? 1 7V3T 'molecular dynamics' ? 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 2 'structure calculation' 'Discovery Studio' ? 'Accelrys Software Inc.' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' Sparky ? Goddard # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5L1 PT1 PT N N 1 5L1 N7 N Y N 2 5L1 N6 N Y N 3 5L1 N5 N Y N 4 5L1 N3 N Y N 5 5L1 C19 C Y N 6 5L1 N1 N Y N 7 5L1 C28 C Y N 8 5L1 N4 N Y N 9 5L1 C25 C Y N 10 5L1 N2 N Y N 11 5L1 C27 C Y N 12 5L1 C11 C Y N 13 5L1 C17 C Y N 14 5L1 C18 C Y N 15 5L1 C15 C Y N 16 5L1 C24 C Y N 17 5L1 C26 C Y N 18 5L1 C16 C Y N 19 5L1 C14 C Y N 20 5L1 C29 C N N 21 5L1 C23 C Y N 22 5L1 C20 C N N 23 5L1 C22 C Y N 24 5L1 C5 C Y N 25 5L1 C21 C Y N 26 5L1 C6 C Y N 27 5L1 F2 F N N 28 5L1 C13 C Y N 29 5L1 C10 C Y N 30 5L1 C12 C Y N 31 5L1 C1 C Y N 32 5L1 F1 F N N 33 5L1 C4 C Y N 34 5L1 C9 C Y N 35 5L1 C7 C Y N 36 5L1 C8 C Y N 37 5L1 C3 C Y N 38 5L1 C2 C Y N 39 5L1 H27 H N N 40 5L1 H17 H N N 41 5L1 H18 H N N 42 5L1 H15 H N N 43 5L1 H24 H N N 44 5L1 H26 H N N 45 5L1 H14 H N N 46 5L1 H3C H N N 47 5L1 H3A H N N 48 5L1 H3B H N N 49 5L1 H23 H N N 50 5L1 H2A H N N 51 5L1 H2B H N N 52 5L1 H2C H N N 53 5L1 H22 H N N 54 5L1 H21 H N N 55 5L1 H13 H N N 56 5L1 H10 H N N 57 5L1 H12 H N N 58 5L1 H1 H N N 59 5L1 H4 H N N 60 5L1 H8 H N N 61 5L1 H3 H N N 62 5L1 H2 H N N 63 DG OP3 O N N 64 DG P P N N 65 DG OP1 O N N 66 DG OP2 O N N 67 DG "O5'" O N N 68 DG "C5'" C N N 69 DG "C4'" C N R 70 DG "O4'" O N N 71 DG "C3'" C N S 72 DG "O3'" O N N 73 DG "C2'" C N N 74 DG "C1'" C N R 75 DG N9 N Y N 76 DG C8 C Y N 77 DG N7 N Y N 78 DG C5 C Y N 79 DG C6 C N N 80 DG O6 O N N 81 DG N1 N N N 82 DG C2 C N N 83 DG N2 N N N 84 DG N3 N N N 85 DG C4 C Y N 86 DG HOP3 H N N 87 DG HOP2 H N N 88 DG "H5'" H N N 89 DG "H5''" H N N 90 DG "H4'" H N N 91 DG "H3'" H N N 92 DG "HO3'" H N N 93 DG "H2'" H N N 94 DG "H2''" H N N 95 DG "H1'" H N N 96 DG H8 H N N 97 DG H1 H N N 98 DG H21 H N N 99 DG H22 H N N 100 DT OP3 O N N 101 DT P P N N 102 DT OP1 O N N 103 DT OP2 O N N 104 DT "O5'" O N N 105 DT "C5'" C N N 106 DT "C4'" C N R 107 DT "O4'" O N N 108 DT "C3'" C N S 109 DT "O3'" O N N 110 DT "C2'" C N N 111 DT "C1'" C N R 112 DT N1 N N N 113 DT C2 C N N 114 DT O2 O N N 115 DT N3 N N N 116 DT C4 C N N 117 DT O4 O N N 118 DT C5 C N N 119 DT C7 C N N 120 DT C6 C N N 121 DT HOP3 H N N 122 DT HOP2 H N N 123 DT "H5'" H N N 124 DT "H5''" H N N 125 DT "H4'" H N N 126 DT "H3'" H N N 127 DT "HO3'" H N N 128 DT "H2'" H N N 129 DT "H2''" H N N 130 DT "H1'" H N N 131 DT H3 H N N 132 DT H71 H N N 133 DT H72 H N N 134 DT H73 H N N 135 DT H6 H N N 136 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5L1 C18 C17 doub Y N 1 5L1 C18 N4 sing Y N 2 5L1 C17 N3 sing Y N 3 5L1 C2 C1 doub Y N 4 5L1 C2 C3 sing Y N 5 5L1 C15 C14 doub Y N 6 5L1 C15 C16 sing Y N 7 5L1 N4 C20 sing N N 8 5L1 N4 C19 doub Y N 9 5L1 C14 C13 sing Y N 10 5L1 C1 N1 sing Y N 11 5L1 C3 C4 doub Y N 12 5L1 N3 C16 sing N N 13 5L1 N3 C19 sing Y N 14 5L1 C16 N2 doub Y N 15 5L1 C19 PT1 sing N N 16 5L1 C13 C12 doub Y N 17 5L1 N1 C5 doub Y N 18 5L1 N1 PT1 sing N N 19 5L1 C4 C5 sing Y N 20 5L1 N2 C12 sing Y N 21 5L1 C29 N7 sing N N 22 5L1 C5 C6 sing N N 23 5L1 PT1 C28 sing N N 24 5L1 PT1 C11 sing N N 25 5L1 N7 C28 sing Y N 26 5L1 N7 C27 sing Y N 27 5L1 C6 C11 doub Y N 28 5L1 C6 C7 sing Y N 29 5L1 C28 N6 doub Y N 30 5L1 C11 C10 sing Y N 31 5L1 F1 C7 sing N N 32 5L1 C27 C26 doub Y N 33 5L1 C7 C8 doub Y N 34 5L1 N6 C26 sing Y N 35 5L1 N6 C25 sing N N 36 5L1 N5 C25 doub Y N 37 5L1 N5 C21 sing Y N 38 5L1 C10 C9 doub Y N 39 5L1 C25 C24 sing Y N 40 5L1 C8 C9 sing Y N 41 5L1 C21 C22 doub Y N 42 5L1 C9 F2 sing N N 43 5L1 C24 C23 doub Y N 44 5L1 C22 C23 sing Y N 45 5L1 C27 H27 sing N N 46 5L1 C17 H17 sing N N 47 5L1 C18 H18 sing N N 48 5L1 C15 H15 sing N N 49 5L1 C24 H24 sing N N 50 5L1 C26 H26 sing N N 51 5L1 C14 H14 sing N N 52 5L1 C29 H3C sing N N 53 5L1 C29 H3A sing N N 54 5L1 C29 H3B sing N N 55 5L1 C23 H23 sing N N 56 5L1 C20 H2A sing N N 57 5L1 C20 H2B sing N N 58 5L1 C20 H2C sing N N 59 5L1 C22 H22 sing N N 60 5L1 C21 H21 sing N N 61 5L1 C13 H13 sing N N 62 5L1 C10 H10 sing N N 63 5L1 C12 H12 sing N N 64 5L1 C1 H1 sing N N 65 5L1 C4 H4 sing N N 66 5L1 C8 H8 sing N N 67 5L1 C3 H3 sing N N 68 5L1 C2 H2 sing N N 69 DG OP3 P sing N N 70 DG OP3 HOP3 sing N N 71 DG P OP1 doub N N 72 DG P OP2 sing N N 73 DG P "O5'" sing N N 74 DG OP2 HOP2 sing N N 75 DG "O5'" "C5'" sing N N 76 DG "C5'" "C4'" sing N N 77 DG "C5'" "H5'" sing N N 78 DG "C5'" "H5''" sing N N 79 DG "C4'" "O4'" sing N N 80 DG "C4'" "C3'" sing N N 81 DG "C4'" "H4'" sing N N 82 DG "O4'" "C1'" sing N N 83 DG "C3'" "O3'" sing N N 84 DG "C3'" "C2'" sing N N 85 DG "C3'" "H3'" sing N N 86 DG "O3'" "HO3'" sing N N 87 DG "C2'" "C1'" sing N N 88 DG "C2'" "H2'" sing N N 89 DG "C2'" "H2''" sing N N 90 DG "C1'" N9 sing N N 91 DG "C1'" "H1'" sing N N 92 DG N9 C8 sing Y N 93 DG N9 C4 sing Y N 94 DG C8 N7 doub Y N 95 DG C8 H8 sing N N 96 DG N7 C5 sing Y N 97 DG C5 C6 sing N N 98 DG C5 C4 doub Y N 99 DG C6 O6 doub N N 100 DG C6 N1 sing N N 101 DG N1 C2 sing N N 102 DG N1 H1 sing N N 103 DG C2 N2 sing N N 104 DG C2 N3 doub N N 105 DG N2 H21 sing N N 106 DG N2 H22 sing N N 107 DG N3 C4 sing N N 108 DT OP3 P sing N N 109 DT OP3 HOP3 sing N N 110 DT P OP1 doub N N 111 DT P OP2 sing N N 112 DT P "O5'" sing N N 113 DT OP2 HOP2 sing N N 114 DT "O5'" "C5'" sing N N 115 DT "C5'" "C4'" sing N N 116 DT "C5'" "H5'" sing N N 117 DT "C5'" "H5''" sing N N 118 DT "C4'" "O4'" sing N N 119 DT "C4'" "C3'" sing N N 120 DT "C4'" "H4'" sing N N 121 DT "O4'" "C1'" sing N N 122 DT "C3'" "O3'" sing N N 123 DT "C3'" "C2'" sing N N 124 DT "C3'" "H3'" sing N N 125 DT "O3'" "HO3'" sing N N 126 DT "C2'" "C1'" sing N N 127 DT "C2'" "H2'" sing N N 128 DT "C2'" "H2''" sing N N 129 DT "C1'" N1 sing N N 130 DT "C1'" "H1'" sing N N 131 DT N1 C2 sing N N 132 DT N1 C6 sing N N 133 DT C2 O2 doub N N 134 DT C2 N3 sing N N 135 DT N3 C4 sing N N 136 DT N3 H3 sing N N 137 DT C4 O4 doub N N 138 DT C4 C5 sing N N 139 DT C5 C7 sing N N 140 DT C5 C6 doub N N 141 DT C7 H71 sing N N 142 DT C7 H72 sing N N 143 DT C7 H73 sing N N 144 DT C6 H6 sing N N 145 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7V3T 'double helix' 7V3T 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 5 1_555 A DG 11 1_555 -2.272 -3.091 0.363 -5.631 1.732 88.191 1 A_DG5:DG11_A A 5 ? A 11 ? 6 3 1 A DG 6 1_555 A DG 1 1_555 -0.796 -3.493 -0.281 -6.081 6.909 97.449 2 A_DG6:DG1_A A 6 ? A 1 ? 6 3 1 A DG 10 1_555 A DG 15 1_555 1.560 3.014 0.977 6.011 -7.230 -91.499 3 A_DG10:DG15_A A 10 ? A 15 ? 6 3 1 A DG 2 1_555 A DG 14 1_555 1.173 3.482 0.252 4.313 -9.032 -90.820 4 A_DG2:DG14_A A 2 ? A 14 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 5 1_555 A DG 11 1_555 A DG 6 1_555 A DG 1 1_555 -1.054 -3.405 0.500 166.255 -51.359 -50.732 1.771 -0.311 0.217 26.185 84.763 -174.585 1 AA_DG5DG6:DG1DG11_AA A 5 ? A 11 ? A 6 ? A 1 ? 1 A DG 6 1_555 A DG 1 1_555 A DG 10 1_555 A DG 15 1_555 1.756 3.476 0.071 5.546 7.188 -176.557 -1.739 0.879 0.061 -3.596 2.774 -176.568 2 AA_DG6DG10:DG15DG1_AA A 6 ? A 1 ? A 10 ? A 15 ? 1 A DG 10 1_555 A DG 15 1_555 A DG 2 1_555 A DG 14 1_555 1.079 3.554 -0.493 -159.027 43.984 -96.494 -1.743 0.688 -0.307 -22.496 -81.336 -170.026 3 AA_DG10DG2:DG14DG15_AA A 10 ? A 15 ? A 2 ? A 14 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Natural Science Foundation of China (NSFC)' ? 21837006 1 'National Natural Science Foundation of China (NSFC)' ? 91953117 2 'National Natural Science Foundation of China (NSFC)' ? 21572282 3 'National Natural Science Foundation of China (NSFC)' ? 22007103 4 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 5L1 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 5L1 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 600 ? 2 'AVANCE III' ? Bruker 700 ? # _atom_sites.entry_id 7V3T _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C F H N O P PT # loop_