data_7VEG # _entry.id 7VEG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7VEG pdb_00007veg 10.2210/pdb7veg/pdb WWPDB D_1300024513 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7VEG _pdbx_database_status.recvd_initial_deposition_date 2021-09-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fan, S.' 1 ? 'Xu, F.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biomolecules _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2218-273X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural Achievability of an NH-pi Interaction between Gln and Phe in a Crystal Structure of a Collagen-like Peptide.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/biom12101433 _citation.pdbx_database_id_PubMed 36291642 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, R.' 1 0000-0003-3654-3536 primary 'Xu, Y.' 2 0000-0002-6129-1492 primary 'Lan, J.' 3 ? primary 'Fan, S.' 4 ? primary 'Huang, J.' 5 0000-0001-9639-2907 primary 'Xu, F.' 6 0000-0003-1077-0431 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7VEG _cell.details ? _cell.formula_units_Z ? _cell.length_a 24.093 _cell.length_a_esd ? _cell.length_b 28.016 _cell.length_b_esd ? _cell.length_c 73.372 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7VEG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn peptide 2051.173 3 ? ? ? ? 2 non-polymer syn 'ACETYLAMINO-ACETIC ACID' 117.103 3 ? ? ? ? 3 non-polymer syn '(2~{S},4~{R})-4-oxidanylpyrrolidine-2-carboxamide' 130.145 3 ? ? ? ? 4 water nat water 18.015 115 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'P(HYP)GP(HYP)GP(HYP)GPQGF(HYP)GP(HYP)GP(HYP)GP' _entity_poly.pdbx_seq_one_letter_code_can PPGPPGPPGPQGFPGPPGPPGP _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 HYP n 1 3 GLY n 1 4 PRO n 1 5 HYP n 1 6 GLY n 1 7 PRO n 1 8 HYP n 1 9 GLY n 1 10 PRO n 1 11 GLN n 1 12 GLY n 1 13 PHE n 1 14 HYP n 1 15 GLY n 1 16 PRO n 1 17 HYP n 1 18 GLY n 1 19 PRO n 1 20 HYP n 1 21 GLY n 1 22 PRO n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7VEG _struct_ref.pdbx_db_accession 7VEG _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7VEG A 1 ? 22 ? 7VEG 2 ? 23 ? 2 23 2 1 7VEG B 1 ? 22 ? 7VEG 2 ? 23 ? 2 23 3 1 7VEG C 1 ? 22 ? 7VEG 2 ? 23 ? 2 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AAC non-polymer . 'ACETYLAMINO-ACETIC ACID' ? 'C4 H7 N O3' 117.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 KLF non-polymer . '(2~{S},4~{R})-4-oxidanylpyrrolidine-2-carboxamide' ? 'C5 H10 N2 O2' 130.145 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7VEG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 274 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 3350, potassium nitrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-10-16 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9798 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9798 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7VEG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.38 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9680 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.19 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 46.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 1.38 _reflns_shell.d_res_low 1.42 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 9680 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.994 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 49.680 _refine.B_iso_mean 18.4015 _refine.B_iso_min 8.520 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7VEG _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.3850 _refine.ls_d_res_low 22.8900 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9680 _refine.ls_number_reflns_R_free 968 _refine.ls_number_reflns_R_work 8712 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 90.6500 _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1686 _refine.ls_R_factor_R_free 0.2046 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1647 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.380 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5YAN _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.8600 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1400 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.3850 _refine_hist.d_res_low 22.8900 _refine_hist.number_atoms_solvent 115 _refine_hist.number_atoms_total 598 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 72 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent 25.54 _refine_hist.pdbx_number_atoms_protein 483 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.385 1.4577 . . 59 535 40.0000 . . . 0.2225 0.0000 0.1727 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4577 1.5490 . . 144 1292 95.0000 . . . 0.2700 0.0000 0.2045 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5490 1.6686 . . 148 1331 99.0000 . . . 0.2592 0.0000 0.1754 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6686 1.8365 . . 151 1355 100.0000 . . . 0.2109 0.0000 0.1781 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8365 2.1021 . . 150 1355 100.0000 . . . 0.2204 0.0000 0.1669 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1021 2.6477 . . 156 1394 100.0000 . . . 0.2074 0.0000 0.1696 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6477 22.89 . . 160 1450 99.0000 . . . 0.1777 0.0000 0.1512 . . . . . . . . . . . # _struct.entry_id 7VEG _struct.title 'Understanding NH-pi interaction between Gln and Phe' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7VEG _struct_keywords.text 'side chain interactions, NH-pi interaction, collagen-like peptide, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 3 ? H N N 2 ? I N N 3 ? J N N 4 ? K N N 4 ? L N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 1 C ? ? ? 1_555 A HYP 2 N ? ? A PRO 2 A HYP 3 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale one ? A PRO 1 N ? ? ? 1_555 D AAC . C1 ? ? A PRO 2 A AAC 101 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale3 covale both ? A HYP 2 C ? ? ? 1_555 A GLY 3 N ? ? A HYP 3 A GLY 4 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A PRO 4 C ? ? ? 1_555 A HYP 5 N ? ? A PRO 5 A HYP 6 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale5 covale both ? A HYP 5 C ? ? ? 1_555 A GLY 6 N ? ? A HYP 6 A GLY 7 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? A PRO 7 C ? ? ? 1_555 A HYP 8 N ? ? A PRO 8 A HYP 9 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale7 covale both ? A HYP 8 C ? ? ? 1_555 A GLY 9 N ? ? A HYP 9 A GLY 10 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale8 covale both ? A PHE 13 C ? ? ? 1_555 A HYP 14 N ? ? A PHE 14 A HYP 15 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale9 covale both ? A HYP 14 C ? ? ? 1_555 A GLY 15 N ? ? A HYP 15 A GLY 16 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale10 covale both ? A PRO 16 C ? ? ? 1_555 A HYP 17 N ? ? A PRO 17 A HYP 18 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale11 covale both ? A HYP 17 C ? ? ? 1_555 A GLY 18 N ? ? A HYP 18 A GLY 19 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale12 covale both ? A PRO 19 C ? ? ? 1_555 A HYP 20 N ? ? A PRO 20 A HYP 21 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale13 covale both ? A HYP 20 C ? ? ? 1_555 A GLY 21 N ? ? A HYP 21 A GLY 22 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale14 covale one ? A PRO 22 C ? ? ? 1_555 E KLF . N ? ? A PRO 23 A KLF 102 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale15 covale both ? B PRO 1 C ? ? ? 1_555 B HYP 2 N ? ? B PRO 2 B HYP 3 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale16 covale one ? B PRO 1 N ? ? ? 1_555 F AAC . C1 ? ? B PRO 2 B AAC 101 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale17 covale both ? B HYP 2 C ? ? ? 1_555 B GLY 3 N ? ? B HYP 3 B GLY 4 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale18 covale both ? B PRO 4 C ? ? ? 1_555 B HYP 5 N ? ? B PRO 5 B HYP 6 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale19 covale both ? B HYP 5 C ? ? ? 1_555 B GLY 6 N ? ? B HYP 6 B GLY 7 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale20 covale both ? B PRO 7 C ? ? ? 1_555 B HYP 8 N ? ? B PRO 8 B HYP 9 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale21 covale both ? B HYP 8 C ? ? ? 1_555 B GLY 9 N ? ? B HYP 9 B GLY 10 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale22 covale both ? B PHE 13 C ? ? ? 1_555 B HYP 14 N ? ? B PHE 14 B HYP 15 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale23 covale both ? B HYP 14 C ? ? ? 1_555 B GLY 15 N ? ? B HYP 15 B GLY 16 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale24 covale both ? B PRO 16 C ? ? ? 1_555 B HYP 17 N ? ? B PRO 17 B HYP 18 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale25 covale both ? B HYP 17 C ? ? ? 1_555 B GLY 18 N ? ? B HYP 18 B GLY 19 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale26 covale both ? B PRO 19 C ? ? ? 1_555 B HYP 20 N ? ? B PRO 20 B HYP 21 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale27 covale both ? B HYP 20 C ? ? ? 1_555 B GLY 21 N ? ? B HYP 21 B GLY 22 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale28 covale one ? B PRO 22 C ? ? ? 1_555 G KLF . N ? ? B PRO 23 B KLF 102 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale29 covale both ? C PRO 1 C ? ? ? 1_555 C HYP 2 N ? ? C PRO 2 C HYP 3 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale30 covale one ? C PRO 1 N ? ? ? 1_555 H AAC . C1 ? ? C PRO 2 C AAC 101 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale31 covale both ? C HYP 2 C ? ? ? 1_555 C GLY 3 N ? ? C HYP 3 C GLY 4 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale32 covale both ? C PRO 4 C ? ? ? 1_555 C HYP 5 N ? ? C PRO 5 C HYP 6 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale33 covale both ? C HYP 5 C ? ? ? 1_555 C GLY 6 N ? ? C HYP 6 C GLY 7 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale34 covale both ? C PRO 7 C ? ? ? 1_555 C HYP 8 N ? ? C PRO 8 C HYP 9 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale35 covale both ? C HYP 8 C ? ? ? 1_555 C GLY 9 N ? ? C HYP 9 C GLY 10 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale36 covale both ? C PHE 13 C ? ? ? 1_555 C HYP 14 N ? ? C PHE 14 C HYP 15 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale37 covale both ? C HYP 14 C ? ? ? 1_555 C GLY 15 N ? ? C HYP 15 C GLY 16 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale38 covale both ? C PRO 16 C ? ? ? 1_555 C HYP 17 N ? ? C PRO 17 C HYP 18 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale39 covale both ? C HYP 17 C ? ? ? 1_555 C GLY 18 N ? ? C HYP 18 C GLY 19 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale40 covale both ? C PRO 19 C ? ? ? 1_555 C HYP 20 N ? ? C PRO 20 C HYP 21 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale41 covale both ? C HYP 20 C ? ? ? 1_555 C GLY 21 N ? ? C HYP 21 C GLY 22 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale42 covale one ? C PRO 22 C ? ? ? 1_555 I KLF . N ? ? C PRO 23 C KLF 102 1_555 ? ? ? ? ? ? ? 1.327 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 7VEG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.041506 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035694 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013629 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 2 2 PRO PRO A . n A 1 2 HYP 2 3 3 HYP HYP A . n A 1 3 GLY 3 4 4 GLY GLY A . n A 1 4 PRO 4 5 5 PRO PRO A . n A 1 5 HYP 5 6 6 HYP HYP A . n A 1 6 GLY 6 7 7 GLY GLY A . n A 1 7 PRO 7 8 8 PRO PRO A . n A 1 8 HYP 8 9 9 HYP HYP A . n A 1 9 GLY 9 10 10 GLY GLY A . n A 1 10 PRO 10 11 11 PRO PRO A . n A 1 11 GLN 11 12 12 GLN GLN A . n A 1 12 GLY 12 13 13 GLY GLY A . n A 1 13 PHE 13 14 14 PHE PHE A . n A 1 14 HYP 14 15 15 HYP HYP A . n A 1 15 GLY 15 16 16 GLY GLY A . n A 1 16 PRO 16 17 17 PRO PRO A . n A 1 17 HYP 17 18 18 HYP HYP A . n A 1 18 GLY 18 19 19 GLY GLY A . n A 1 19 PRO 19 20 20 PRO PRO A . n A 1 20 HYP 20 21 21 HYP HYP A . n A 1 21 GLY 21 22 22 GLY GLY A . n A 1 22 PRO 22 23 23 PRO PRO A . n B 1 1 PRO 1 2 2 PRO PRO B . n B 1 2 HYP 2 3 3 HYP HYP B . n B 1 3 GLY 3 4 4 GLY GLY B . n B 1 4 PRO 4 5 5 PRO PRO B . n B 1 5 HYP 5 6 6 HYP HYP B . n B 1 6 GLY 6 7 7 GLY GLY B . n B 1 7 PRO 7 8 8 PRO PRO B . n B 1 8 HYP 8 9 9 HYP HYP B . n B 1 9 GLY 9 10 10 GLY GLY B . n B 1 10 PRO 10 11 11 PRO PRO B . n B 1 11 GLN 11 12 12 GLN GLN B . n B 1 12 GLY 12 13 13 GLY GLY B . n B 1 13 PHE 13 14 14 PHE PHE B . n B 1 14 HYP 14 15 15 HYP HYP B . n B 1 15 GLY 15 16 16 GLY GLY B . n B 1 16 PRO 16 17 17 PRO PRO B . n B 1 17 HYP 17 18 18 HYP HYP B . n B 1 18 GLY 18 19 19 GLY GLY B . n B 1 19 PRO 19 20 20 PRO PRO B . n B 1 20 HYP 20 21 21 HYP HYP B . n B 1 21 GLY 21 22 22 GLY GLY B . n B 1 22 PRO 22 23 23 PRO PRO B . n C 1 1 PRO 1 2 2 PRO PRO C . n C 1 2 HYP 2 3 3 HYP HYP C . n C 1 3 GLY 3 4 4 GLY GLY C . n C 1 4 PRO 4 5 5 PRO PRO C . n C 1 5 HYP 5 6 6 HYP HYP C . n C 1 6 GLY 6 7 7 GLY GLY C . n C 1 7 PRO 7 8 8 PRO PRO C . n C 1 8 HYP 8 9 9 HYP HYP C . n C 1 9 GLY 9 10 10 GLY GLY C . n C 1 10 PRO 10 11 11 PRO PRO C . n C 1 11 GLN 11 12 12 GLN GLN C . n C 1 12 GLY 12 13 13 GLY GLY C . n C 1 13 PHE 13 14 14 PHE PHE C . n C 1 14 HYP 14 15 15 HYP HYP C . n C 1 15 GLY 15 16 16 GLY GLY C . n C 1 16 PRO 16 17 17 PRO PRO C . n C 1 17 HYP 17 18 18 HYP HYP C . n C 1 18 GLY 18 19 19 GLY GLY C . n C 1 19 PRO 19 20 20 PRO PRO C . n C 1 20 HYP 20 21 21 HYP HYP C . n C 1 21 GLY 21 22 22 GLY GLY C . n C 1 22 PRO 22 23 23 PRO PRO C . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email feixu@jiangnan.edu.cn _pdbx_contact_author.name_first Fei _pdbx_contact_author.name_last Xu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1077-0431 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 AAC 1 101 1 AAC AYG A . E 3 KLF 1 102 24 KLF HYX A . F 2 AAC 1 101 1 AAC AYG B . G 3 KLF 1 102 24 KLF HYX B . H 2 AAC 1 101 1 AAC AYG C . I 3 KLF 1 102 24 KLF HYX C . J 4 HOH 1 201 80 HOH HOH A . J 4 HOH 2 202 42 HOH HOH A . J 4 HOH 3 203 7 HOH HOH A . J 4 HOH 4 204 84 HOH HOH A . J 4 HOH 5 205 44 HOH HOH A . J 4 HOH 6 206 5 HOH HOH A . J 4 HOH 7 207 41 HOH HOH A . J 4 HOH 8 208 46 HOH HOH A . J 4 HOH 9 209 50 HOH HOH A . J 4 HOH 10 210 51 HOH HOH A . J 4 HOH 11 211 61 HOH HOH A . J 4 HOH 12 212 94 HOH HOH A . J 4 HOH 13 213 1 HOH HOH A . J 4 HOH 14 214 9 HOH HOH A . J 4 HOH 15 215 25 HOH HOH A . J 4 HOH 16 216 8 HOH HOH A . J 4 HOH 17 217 71 HOH HOH A . J 4 HOH 18 218 18 HOH HOH A . J 4 HOH 19 219 92 HOH HOH A . J 4 HOH 20 220 17 HOH HOH A . J 4 HOH 21 221 98 HOH HOH A . J 4 HOH 22 222 103 HOH HOH A . J 4 HOH 23 223 21 HOH HOH A . J 4 HOH 24 224 72 HOH HOH A . J 4 HOH 25 225 114 HOH HOH A . J 4 HOH 26 226 37 HOH HOH A . J 4 HOH 27 227 15 HOH HOH A . J 4 HOH 28 228 39 HOH HOH A . J 4 HOH 29 229 110 HOH HOH A . J 4 HOH 30 230 58 HOH HOH A . J 4 HOH 31 231 24 HOH HOH A . J 4 HOH 32 232 88 HOH HOH A . J 4 HOH 33 233 68 HOH HOH A . J 4 HOH 34 234 78 HOH HOH A . J 4 HOH 35 235 31 HOH HOH A . J 4 HOH 36 236 106 HOH HOH A . J 4 HOH 37 237 105 HOH HOH A . K 4 HOH 1 201 86 HOH HOH B . K 4 HOH 2 202 107 HOH HOH B . K 4 HOH 3 203 67 HOH HOH B . K 4 HOH 4 204 87 HOH HOH B . K 4 HOH 5 205 75 HOH HOH B . K 4 HOH 6 206 3 HOH HOH B . K 4 HOH 7 207 33 HOH HOH B . K 4 HOH 8 208 69 HOH HOH B . K 4 HOH 9 209 34 HOH HOH B . K 4 HOH 10 210 66 HOH HOH B . K 4 HOH 11 211 55 HOH HOH B . K 4 HOH 12 212 2 HOH HOH B . K 4 HOH 13 213 10 HOH HOH B . K 4 HOH 14 214 53 HOH HOH B . K 4 HOH 15 215 36 HOH HOH B . K 4 HOH 16 216 27 HOH HOH B . K 4 HOH 17 217 82 HOH HOH B . K 4 HOH 18 218 11 HOH HOH B . K 4 HOH 19 219 59 HOH HOH B . K 4 HOH 20 220 74 HOH HOH B . K 4 HOH 21 221 35 HOH HOH B . K 4 HOH 22 222 40 HOH HOH B . K 4 HOH 23 223 79 HOH HOH B . K 4 HOH 24 224 76 HOH HOH B . K 4 HOH 25 225 63 HOH HOH B . K 4 HOH 26 226 45 HOH HOH B . K 4 HOH 27 227 99 HOH HOH B . K 4 HOH 28 228 22 HOH HOH B . K 4 HOH 29 229 85 HOH HOH B . K 4 HOH 30 230 47 HOH HOH B . K 4 HOH 31 231 109 HOH HOH B . K 4 HOH 32 232 108 HOH HOH B . K 4 HOH 33 233 20 HOH HOH B . K 4 HOH 34 234 28 HOH HOH B . K 4 HOH 35 235 91 HOH HOH B . K 4 HOH 36 236 14 HOH HOH B . K 4 HOH 37 237 83 HOH HOH B . K 4 HOH 38 238 100 HOH HOH B . L 4 HOH 1 201 95 HOH HOH C . L 4 HOH 2 202 52 HOH HOH C . L 4 HOH 3 203 70 HOH HOH C . L 4 HOH 4 204 43 HOH HOH C . L 4 HOH 5 205 48 HOH HOH C . L 4 HOH 6 206 4 HOH HOH C . L 4 HOH 7 207 57 HOH HOH C . L 4 HOH 8 208 60 HOH HOH C . L 4 HOH 9 209 102 HOH HOH C . L 4 HOH 10 210 6 HOH HOH C . L 4 HOH 11 211 12 HOH HOH C . L 4 HOH 12 212 56 HOH HOH C . L 4 HOH 13 213 16 HOH HOH C . L 4 HOH 14 214 23 HOH HOH C . L 4 HOH 15 215 32 HOH HOH C . L 4 HOH 16 216 96 HOH HOH C . L 4 HOH 17 217 101 HOH HOH C . L 4 HOH 18 218 38 HOH HOH C . L 4 HOH 19 219 13 HOH HOH C . L 4 HOH 20 220 54 HOH HOH C . L 4 HOH 21 221 30 HOH HOH C . L 4 HOH 22 222 90 HOH HOH C . L 4 HOH 23 223 93 HOH HOH C . L 4 HOH 24 224 64 HOH HOH C . L 4 HOH 25 225 115 HOH HOH C . L 4 HOH 26 226 89 HOH HOH C . L 4 HOH 27 227 62 HOH HOH C . L 4 HOH 28 228 19 HOH HOH C . L 4 HOH 29 229 77 HOH HOH C . L 4 HOH 30 230 26 HOH HOH C . L 4 HOH 31 231 49 HOH HOH C . L 4 HOH 32 232 97 HOH HOH C . L 4 HOH 33 233 81 HOH HOH C . L 4 HOH 34 234 65 HOH HOH C . L 4 HOH 35 235 29 HOH HOH C . L 4 HOH 36 236 112 HOH HOH C . L 4 HOH 37 237 104 HOH HOH C . L 4 HOH 38 238 113 HOH HOH C . L 4 HOH 39 239 111 HOH HOH C . L 4 HOH 40 240 73 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4970 ? 1 MORE -5 ? 1 'SSA (A^2)' 4120 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-10-19 2 'Structure model' 1 1 2023-05-03 3 'Structure model' 1 2 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Refinement description' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' refine_ls_restr_ncs 4 2 'Structure model' struct_ncs_dom 5 2 'Structure model' struct_ncs_dom_lim 6 3 'Structure model' chem_comp_atom 7 3 'Structure model' chem_comp_bond 8 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_citation_author.identifier_ORCID' 11 2 'Structure model' '_citation_author.name' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Zbyszek Otwinowski' hkl@hkl-xray.com ? ? ? ? ? http://www.hkl-xray.com/ ? HKL-2000 ? ? package . 1 ? 'data scaling' ? ? 'Zbyszek Otwinowski' hkl@hkl-xray.com ? ? ? ? ? http://www.hkl-xray.com/ ? SCALEPACK ? ? program . 2 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 3 ? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ? PHENIX ? ? package 1.15.2_3472 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 5 # _pdbx_entry_details.entry_id 7VEG _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 236 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 C _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 239 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_455 _pdbx_validate_symm_contact.dist 2.13 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AAC C1 C N N 1 AAC C2 C N N 2 AAC C3 C N N 3 AAC C4 C N N 4 AAC N1 N N N 5 AAC O1 O N N 6 AAC O2 O N N 7 AAC O3 O N N 8 AAC HC21 H N N 9 AAC HC22 H N N 10 AAC HC41 H N N 11 AAC HC42 H N N 12 AAC HC43 H N N 13 AAC HN1 H N N 14 AAC HO1 H N N 15 GLN N N N N 16 GLN CA C N S 17 GLN C C N N 18 GLN O O N N 19 GLN CB C N N 20 GLN CG C N N 21 GLN CD C N N 22 GLN OE1 O N N 23 GLN NE2 N N N 24 GLN OXT O N N 25 GLN H H N N 26 GLN H2 H N N 27 GLN HA H N N 28 GLN HB2 H N N 29 GLN HB3 H N N 30 GLN HG2 H N N 31 GLN HG3 H N N 32 GLN HE21 H N N 33 GLN HE22 H N N 34 GLN HXT H N N 35 GLY N N N N 36 GLY CA C N N 37 GLY C C N N 38 GLY O O N N 39 GLY OXT O N N 40 GLY H H N N 41 GLY H2 H N N 42 GLY HA2 H N N 43 GLY HA3 H N N 44 GLY HXT H N N 45 HOH O O N N 46 HOH H1 H N N 47 HOH H2 H N N 48 HYP N N N N 49 HYP CA C N S 50 HYP C C N N 51 HYP O O N N 52 HYP CB C N N 53 HYP CG C N R 54 HYP CD C N N 55 HYP OD1 O N N 56 HYP OXT O N N 57 HYP H H N N 58 HYP HA H N N 59 HYP HB2 H N N 60 HYP HB3 H N N 61 HYP HG H N N 62 HYP HD22 H N N 63 HYP HD23 H N N 64 HYP HD1 H N N 65 HYP HXT H N N 66 KLF N N N N 67 KLF CA C N S 68 KLF C C N N 69 KLF O O N N 70 KLF CB C N N 71 KLF CG C N R 72 KLF CD C N N 73 KLF OD1 O N N 74 KLF ND2 N N N 75 KLF H1 H N N 76 KLF H3 H N N 77 KLF H4 H N N 78 KLF H5 H N N 79 KLF H6 H N N 80 KLF H7 H N N 81 KLF H8 H N N 82 KLF H9 H N N 83 KLF H10 H N N 84 KLF H11 H N N 85 PHE N N N N 86 PHE CA C N S 87 PHE C C N N 88 PHE O O N N 89 PHE CB C N N 90 PHE CG C Y N 91 PHE CD1 C Y N 92 PHE CD2 C Y N 93 PHE CE1 C Y N 94 PHE CE2 C Y N 95 PHE CZ C Y N 96 PHE OXT O N N 97 PHE H H N N 98 PHE H2 H N N 99 PHE HA H N N 100 PHE HB2 H N N 101 PHE HB3 H N N 102 PHE HD1 H N N 103 PHE HD2 H N N 104 PHE HE1 H N N 105 PHE HE2 H N N 106 PHE HZ H N N 107 PHE HXT H N N 108 PRO N N N N 109 PRO CA C N S 110 PRO C C N N 111 PRO O O N N 112 PRO CB C N N 113 PRO CG C N N 114 PRO CD C N N 115 PRO OXT O N N 116 PRO H H N N 117 PRO HA H N N 118 PRO HB2 H N N 119 PRO HB3 H N N 120 PRO HG2 H N N 121 PRO HG3 H N N 122 PRO HD2 H N N 123 PRO HD3 H N N 124 PRO HXT H N N 125 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AAC C1 C2 sing N N 1 AAC C1 O1 sing N N 2 AAC C1 O2 doub N N 3 AAC C2 N1 sing N N 4 AAC C2 HC21 sing N N 5 AAC C2 HC22 sing N N 6 AAC C3 C4 sing N N 7 AAC C3 N1 sing N N 8 AAC C3 O3 doub N N 9 AAC C4 HC41 sing N N 10 AAC C4 HC42 sing N N 11 AAC C4 HC43 sing N N 12 AAC N1 HN1 sing N N 13 AAC O1 HO1 sing N N 14 GLN N CA sing N N 15 GLN N H sing N N 16 GLN N H2 sing N N 17 GLN CA C sing N N 18 GLN CA CB sing N N 19 GLN CA HA sing N N 20 GLN C O doub N N 21 GLN C OXT sing N N 22 GLN CB CG sing N N 23 GLN CB HB2 sing N N 24 GLN CB HB3 sing N N 25 GLN CG CD sing N N 26 GLN CG HG2 sing N N 27 GLN CG HG3 sing N N 28 GLN CD OE1 doub N N 29 GLN CD NE2 sing N N 30 GLN NE2 HE21 sing N N 31 GLN NE2 HE22 sing N N 32 GLN OXT HXT sing N N 33 GLY N CA sing N N 34 GLY N H sing N N 35 GLY N H2 sing N N 36 GLY CA C sing N N 37 GLY CA HA2 sing N N 38 GLY CA HA3 sing N N 39 GLY C O doub N N 40 GLY C OXT sing N N 41 GLY OXT HXT sing N N 42 HOH O H1 sing N N 43 HOH O H2 sing N N 44 HYP N CA sing N N 45 HYP N CD sing N N 46 HYP N H sing N N 47 HYP CA C sing N N 48 HYP CA CB sing N N 49 HYP CA HA sing N N 50 HYP C O doub N N 51 HYP C OXT sing N N 52 HYP CB CG sing N N 53 HYP CB HB2 sing N N 54 HYP CB HB3 sing N N 55 HYP CG CD sing N N 56 HYP CG OD1 sing N N 57 HYP CG HG sing N N 58 HYP CD HD22 sing N N 59 HYP CD HD23 sing N N 60 HYP OD1 HD1 sing N N 61 HYP OXT HXT sing N N 62 KLF ND2 C sing N N 63 KLF O C doub N N 64 KLF C CA sing N N 65 KLF CA CB sing N N 66 KLF CA N sing N N 67 KLF CB CG sing N N 68 KLF N CD sing N N 69 KLF CD CG sing N N 70 KLF CG OD1 sing N N 71 KLF N H1 sing N N 72 KLF CA H3 sing N N 73 KLF CB H4 sing N N 74 KLF CB H5 sing N N 75 KLF CG H6 sing N N 76 KLF CD H7 sing N N 77 KLF CD H8 sing N N 78 KLF OD1 H9 sing N N 79 KLF ND2 H10 sing N N 80 KLF ND2 H11 sing N N 81 PHE N CA sing N N 82 PHE N H sing N N 83 PHE N H2 sing N N 84 PHE CA C sing N N 85 PHE CA CB sing N N 86 PHE CA HA sing N N 87 PHE C O doub N N 88 PHE C OXT sing N N 89 PHE CB CG sing N N 90 PHE CB HB2 sing N N 91 PHE CB HB3 sing N N 92 PHE CG CD1 doub Y N 93 PHE CG CD2 sing Y N 94 PHE CD1 CE1 sing Y N 95 PHE CD1 HD1 sing N N 96 PHE CD2 CE2 doub Y N 97 PHE CD2 HD2 sing N N 98 PHE CE1 CZ doub Y N 99 PHE CE1 HE1 sing N N 100 PHE CE2 CZ sing Y N 101 PHE CE2 HE2 sing N N 102 PHE CZ HZ sing N N 103 PHE OXT HXT sing N N 104 PRO N CA sing N N 105 PRO N CD sing N N 106 PRO N H sing N N 107 PRO CA C sing N N 108 PRO CA CB sing N N 109 PRO CA HA sing N N 110 PRO C O doub N N 111 PRO C OXT sing N N 112 PRO CB CG sing N N 113 PRO CB HB2 sing N N 114 PRO CB HB3 sing N N 115 PRO CG CD sing N N 116 PRO CG HG2 sing N N 117 PRO CG HG3 sing N N 118 PRO CD HD2 sing N N 119 PRO CD HD3 sing N N 120 PRO OXT HXT sing N N 121 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id AAC _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id AAC _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETYLAMINO-ACETIC ACID' AAC 3 '(2~{S},4~{R})-4-oxidanylpyrrolidine-2-carboxamide' KLF 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5YAN _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #