data_7VU8 # _entry.id 7VU8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7VU8 pdb_00007vu8 10.2210/pdb7vu8/pdb WWPDB D_1300025397 ? ? EMDB EMD-32126 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-32126 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7VU8 _pdbx_database_status.recvd_initial_deposition_date 2021-11-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tan, Y.' 1 ? 'Xu, C.' 2 ? 'Yu, D.' 3 ? 'Song, W.' 4 ? 'Wu, B.' 5 ? 'Schulze-Lefert, P.' 6 ? 'Chai, J.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 185 _citation.language ? _citation.page_first 2370 _citation.page_last 2386.e18 _citation.title ;TIR domains of plant immune receptors are 2',3'-cAMP/cGMP synthetases mediating cell death. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2022.04.032 _citation.pdbx_database_id_PubMed 35597242 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yu, D.' 1 ? primary 'Song, W.' 2 ? primary 'Tan, E.Y.J.' 3 ? primary 'Liu, L.' 4 ? primary 'Cao, Y.' 5 ? primary 'Jirschitzka, J.' 6 ? primary 'Li, E.' 7 ? primary 'Logemann, E.' 8 ? primary 'Xu, C.' 9 ? primary 'Huang, S.' 10 ? primary 'Jia, A.' 11 ? primary 'Chang, X.' 12 ? primary 'Han, Z.' 13 ? primary 'Wu, B.' 14 ? primary 'Schulze-Lefert, P.' 15 ? primary 'Chai, J.' 16 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7VU8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Flax rust resistance protein' 23532.344 1 ? E197G ? ? 2 non-polymer syn ;2',3'- cyclic AMP ; 329.206 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NSKDSIVNDDDDSTSEVDAIPDSTNPSGSFPSVEYDVFLSFRGPDTRKQFTDFLYHFLCYYKIHTFRDDDELRKGKEIGP NLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTI QNWKDALKKVGDLKGWHIGKDDEQGAIADKVSADIWSHISKENL ; _entity_poly.pdbx_seq_one_letter_code_can ;NSKDSIVNDDDDSTSEVDAIPDSTNPSGSFPSVEYDVFLSFRGPDTRKQFTDFLYHFLCYYKIHTFRDDDELRKGKEIGP NLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTI QNWKDALKKVGDLKGWHIGKDDEQGAIADKVSADIWSHISKENL ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 SER n 1 3 LYS n 1 4 ASP n 1 5 SER n 1 6 ILE n 1 7 VAL n 1 8 ASN n 1 9 ASP n 1 10 ASP n 1 11 ASP n 1 12 ASP n 1 13 SER n 1 14 THR n 1 15 SER n 1 16 GLU n 1 17 VAL n 1 18 ASP n 1 19 ALA n 1 20 ILE n 1 21 PRO n 1 22 ASP n 1 23 SER n 1 24 THR n 1 25 ASN n 1 26 PRO n 1 27 SER n 1 28 GLY n 1 29 SER n 1 30 PHE n 1 31 PRO n 1 32 SER n 1 33 VAL n 1 34 GLU n 1 35 TYR n 1 36 ASP n 1 37 VAL n 1 38 PHE n 1 39 LEU n 1 40 SER n 1 41 PHE n 1 42 ARG n 1 43 GLY n 1 44 PRO n 1 45 ASP n 1 46 THR n 1 47 ARG n 1 48 LYS n 1 49 GLN n 1 50 PHE n 1 51 THR n 1 52 ASP n 1 53 PHE n 1 54 LEU n 1 55 TYR n 1 56 HIS n 1 57 PHE n 1 58 LEU n 1 59 CYS n 1 60 TYR n 1 61 TYR n 1 62 LYS n 1 63 ILE n 1 64 HIS n 1 65 THR n 1 66 PHE n 1 67 ARG n 1 68 ASP n 1 69 ASP n 1 70 ASP n 1 71 GLU n 1 72 LEU n 1 73 ARG n 1 74 LYS n 1 75 GLY n 1 76 LYS n 1 77 GLU n 1 78 ILE n 1 79 GLY n 1 80 PRO n 1 81 ASN n 1 82 LEU n 1 83 LEU n 1 84 ARG n 1 85 ALA n 1 86 ILE n 1 87 ASP n 1 88 GLN n 1 89 SER n 1 90 LYS n 1 91 ILE n 1 92 TYR n 1 93 VAL n 1 94 PRO n 1 95 ILE n 1 96 ILE n 1 97 SER n 1 98 SER n 1 99 GLY n 1 100 TYR n 1 101 ALA n 1 102 ASP n 1 103 SER n 1 104 LYS n 1 105 TRP n 1 106 CYS n 1 107 LEU n 1 108 MET n 1 109 GLU n 1 110 LEU n 1 111 ALA n 1 112 GLU n 1 113 ILE n 1 114 VAL n 1 115 ARG n 1 116 ARG n 1 117 GLN n 1 118 GLU n 1 119 GLU n 1 120 ASP n 1 121 PRO n 1 122 ARG n 1 123 ARG n 1 124 ILE n 1 125 ILE n 1 126 LEU n 1 127 PRO n 1 128 ILE n 1 129 PHE n 1 130 TYR n 1 131 MET n 1 132 VAL n 1 133 ASP n 1 134 PRO n 1 135 SER n 1 136 ASP n 1 137 VAL n 1 138 ARG n 1 139 HIS n 1 140 GLN n 1 141 THR n 1 142 GLY n 1 143 CYS n 1 144 TYR n 1 145 LYS n 1 146 LYS n 1 147 ALA n 1 148 PHE n 1 149 ARG n 1 150 LYS n 1 151 HIS n 1 152 ALA n 1 153 ASN n 1 154 LYS n 1 155 PHE n 1 156 ASP n 1 157 GLY n 1 158 GLN n 1 159 THR n 1 160 ILE n 1 161 GLN n 1 162 ASN n 1 163 TRP n 1 164 LYS n 1 165 ASP n 1 166 ALA n 1 167 LEU n 1 168 LYS n 1 169 LYS n 1 170 VAL n 1 171 GLY n 1 172 ASP n 1 173 LEU n 1 174 LYS n 1 175 GLY n 1 176 TRP n 1 177 HIS n 1 178 ILE n 1 179 GLY n 1 180 LYS n 1 181 ASP n 1 182 ASP n 1 183 GLU n 1 184 GLN n 1 185 GLY n 1 186 ALA n 1 187 ILE n 1 188 ALA n 1 189 ASP n 1 190 LYS n 1 191 VAL n 1 192 SER n 1 193 ALA n 1 194 ASP n 1 195 ILE n 1 196 TRP n 1 197 SER n 1 198 HIS n 1 199 ILE n 1 200 SER n 1 201 LYS n 1 202 GLU n 1 203 ASN n 1 204 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 204 _entity_src_gen.gene_src_common_name 'Flax, Linum humile' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Linum usitatissimum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4006 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9XEH4_LINUS _struct_ref.pdbx_db_accession Q9XEH4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NSKDSIVNDDDDSTSEVDAIPDSTNPSGSFPSVEYDVFLSFRGPDTRKQFTDFLYHFLCYYKIHTFRDDDELRKGKEIGP NLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTI QNWKDALKKVEDLKGWHIGKDDEQGAIADKVSADIWSHISKENL ; _struct_ref.pdbx_align_begin 27 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7VU8 _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 204 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9XEH4 _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 230 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 27 _struct_ref_seq.pdbx_auth_seq_align_end 230 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 7VU8 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id B _struct_ref_seq_dif.seq_num 171 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9XEH4 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 197 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 197 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACK non-polymer . ;2',3'- cyclic AMP ; ? 'C10 H12 N5 O6 P' 329.206 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7VU8 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 146.90 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7VU8 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 1472 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.460 ? 1987 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 12.911 ? 545 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.042 ? 204 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 251 ? f_plane_restr ? ? # _struct.entry_id 7VU8 _struct.title 'L7-Tir domain with bound ligand' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7VU8 _struct_keywords.text 'Nucleic acid hydrolysis complex, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 42 ? ARG A 47 ? ARG B 68 ARG B 73 1 ? 6 HELX_P HELX_P2 AA2 PHE A 50 ? TYR A 60 ? PHE B 76 TYR B 86 1 ? 11 HELX_P HELX_P3 AA3 ASN A 81 ? SER A 89 ? ASN B 107 SER B 115 1 ? 9 HELX_P HELX_P4 AA4 SER A 103 ? ASP A 120 ? SER B 129 ASP B 146 1 ? 18 HELX_P HELX_P5 AA5 TYR A 144 ? HIS A 151 ? TYR B 170 HIS B 177 1 ? 8 HELX_P HELX_P6 AA6 ALA A 152 ? LYS A 154 ? ALA B 178 LYS B 180 5 ? 3 HELX_P HELX_P7 AA7 GLN A 158 ? GLY A 171 ? GLN B 184 GLY B 197 1 ? 14 HELX_P HELX_P8 AA8 GLY A 185 ? LYS A 201 ? GLY B 211 LYS B 227 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 37 ? SER A 40 ? VAL B 63 SER B 66 AA1 2 ILE A 91 ? PRO A 94 ? ILE B 117 PRO B 120 AA1 3 ILE A 124 ? ILE A 125 ? ILE B 150 ILE B 151 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 38 ? N PHE B 64 O VAL A 93 ? O VAL B 119 AA1 2 3 N TYR A 92 ? N TYR B 118 O ILE A 124 ? O ILE B 150 # _atom_sites.entry_id 7VU8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 27 ? ? ? B . n A 1 2 SER 2 28 ? ? ? B . n A 1 3 LYS 3 29 ? ? ? B . n A 1 4 ASP 4 30 ? ? ? B . n A 1 5 SER 5 31 ? ? ? B . n A 1 6 ILE 6 32 ? ? ? B . n A 1 7 VAL 7 33 ? ? ? B . n A 1 8 ASN 8 34 ? ? ? B . n A 1 9 ASP 9 35 ? ? ? B . n A 1 10 ASP 10 36 ? ? ? B . n A 1 11 ASP 11 37 ? ? ? B . n A 1 12 ASP 12 38 ? ? ? B . n A 1 13 SER 13 39 ? ? ? B . n A 1 14 THR 14 40 ? ? ? B . n A 1 15 SER 15 41 ? ? ? B . n A 1 16 GLU 16 42 ? ? ? B . n A 1 17 VAL 17 43 ? ? ? B . n A 1 18 ASP 18 44 ? ? ? B . n A 1 19 ALA 19 45 ? ? ? B . n A 1 20 ILE 20 46 ? ? ? B . n A 1 21 PRO 21 47 ? ? ? B . n A 1 22 ASP 22 48 ? ? ? B . n A 1 23 SER 23 49 ? ? ? B . n A 1 24 THR 24 50 ? ? ? B . n A 1 25 ASN 25 51 ? ? ? B . n A 1 26 PRO 26 52 ? ? ? B . n A 1 27 SER 27 53 ? ? ? B . n A 1 28 GLY 28 54 ? ? ? B . n A 1 29 SER 29 55 ? ? ? B . n A 1 30 PHE 30 56 ? ? ? B . n A 1 31 PRO 31 57 ? ? ? B . n A 1 32 SER 32 58 ? ? ? B . n A 1 33 VAL 33 59 59 VAL VAL B . n A 1 34 GLU 34 60 60 GLU GLU B . n A 1 35 TYR 35 61 61 TYR TYR B . n A 1 36 ASP 36 62 62 ASP ASP B . n A 1 37 VAL 37 63 63 VAL VAL B . n A 1 38 PHE 38 64 64 PHE PHE B . n A 1 39 LEU 39 65 65 LEU LEU B . n A 1 40 SER 40 66 66 SER SER B . n A 1 41 PHE 41 67 67 PHE PHE B . n A 1 42 ARG 42 68 68 ARG ARG B . n A 1 43 GLY 43 69 69 GLY GLY B . n A 1 44 PRO 44 70 70 PRO PRO B . n A 1 45 ASP 45 71 71 ASP ASP B . n A 1 46 THR 46 72 72 THR THR B . n A 1 47 ARG 47 73 73 ARG ARG B . n A 1 48 LYS 48 74 74 LYS LYS B . n A 1 49 GLN 49 75 75 GLN GLN B . n A 1 50 PHE 50 76 76 PHE PHE B . n A 1 51 THR 51 77 77 THR THR B . n A 1 52 ASP 52 78 78 ASP ASP B . n A 1 53 PHE 53 79 79 PHE PHE B . n A 1 54 LEU 54 80 80 LEU LEU B . n A 1 55 TYR 55 81 81 TYR TYR B . n A 1 56 HIS 56 82 82 HIS HIS B . n A 1 57 PHE 57 83 83 PHE PHE B . n A 1 58 LEU 58 84 84 LEU LEU B . n A 1 59 CYS 59 85 85 CYS CYS B . n A 1 60 TYR 60 86 86 TYR TYR B . n A 1 61 TYR 61 87 87 TYR TYR B . n A 1 62 LYS 62 88 88 LYS LYS B . n A 1 63 ILE 63 89 89 ILE ILE B . n A 1 64 HIS 64 90 90 HIS HIS B . n A 1 65 THR 65 91 91 THR THR B . n A 1 66 PHE 66 92 92 PHE PHE B . n A 1 67 ARG 67 93 93 ARG ARG B . n A 1 68 ASP 68 94 94 ASP ASP B . n A 1 69 ASP 69 95 95 ASP ASP B . n A 1 70 ASP 70 96 96 ASP ASP B . n A 1 71 GLU 71 97 97 GLU GLU B . n A 1 72 LEU 72 98 98 LEU LEU B . n A 1 73 ARG 73 99 99 ARG ARG B . n A 1 74 LYS 74 100 100 LYS LYS B . n A 1 75 GLY 75 101 101 GLY GLY B . n A 1 76 LYS 76 102 102 LYS LYS B . n A 1 77 GLU 77 103 103 GLU GLU B . n A 1 78 ILE 78 104 104 ILE ILE B . n A 1 79 GLY 79 105 105 GLY GLY B . n A 1 80 PRO 80 106 106 PRO PRO B . n A 1 81 ASN 81 107 107 ASN ASN B . n A 1 82 LEU 82 108 108 LEU LEU B . n A 1 83 LEU 83 109 109 LEU LEU B . n A 1 84 ARG 84 110 110 ARG ARG B . n A 1 85 ALA 85 111 111 ALA ALA B . n A 1 86 ILE 86 112 112 ILE ILE B . n A 1 87 ASP 87 113 113 ASP ASP B . n A 1 88 GLN 88 114 114 GLN GLN B . n A 1 89 SER 89 115 115 SER SER B . n A 1 90 LYS 90 116 116 LYS LYS B . n A 1 91 ILE 91 117 117 ILE ILE B . n A 1 92 TYR 92 118 118 TYR TYR B . n A 1 93 VAL 93 119 119 VAL VAL B . n A 1 94 PRO 94 120 120 PRO PRO B . n A 1 95 ILE 95 121 121 ILE ILE B . n A 1 96 ILE 96 122 122 ILE ILE B . n A 1 97 SER 97 123 123 SER SER B . n A 1 98 SER 98 124 124 SER SER B . n A 1 99 GLY 99 125 125 GLY GLY B . n A 1 100 TYR 100 126 126 TYR TYR B . n A 1 101 ALA 101 127 127 ALA ALA B . n A 1 102 ASP 102 128 128 ASP ASP B . n A 1 103 SER 103 129 129 SER SER B . n A 1 104 LYS 104 130 130 LYS LYS B . n A 1 105 TRP 105 131 131 TRP TRP B . n A 1 106 CYS 106 132 132 CYS CYS B . n A 1 107 LEU 107 133 133 LEU LEU B . n A 1 108 MET 108 134 134 MET MET B . n A 1 109 GLU 109 135 135 GLU GLU B . n A 1 110 LEU 110 136 136 LEU LEU B . n A 1 111 ALA 111 137 137 ALA ALA B . n A 1 112 GLU 112 138 138 GLU GLU B . n A 1 113 ILE 113 139 139 ILE ILE B . n A 1 114 VAL 114 140 140 VAL VAL B . n A 1 115 ARG 115 141 141 ARG ARG B . n A 1 116 ARG 116 142 142 ARG ARG B . n A 1 117 GLN 117 143 143 GLN GLN B . n A 1 118 GLU 118 144 144 GLU GLU B . n A 1 119 GLU 119 145 145 GLU GLU B . n A 1 120 ASP 120 146 146 ASP ASP B . n A 1 121 PRO 121 147 147 PRO PRO B . n A 1 122 ARG 122 148 148 ARG ARG B . n A 1 123 ARG 123 149 149 ARG ARG B . n A 1 124 ILE 124 150 150 ILE ILE B . n A 1 125 ILE 125 151 151 ILE ILE B . n A 1 126 LEU 126 152 152 LEU LEU B . n A 1 127 PRO 127 153 153 PRO PRO B . n A 1 128 ILE 128 154 154 ILE ILE B . n A 1 129 PHE 129 155 155 PHE PHE B . n A 1 130 TYR 130 156 156 TYR TYR B . n A 1 131 MET 131 157 157 MET MET B . n A 1 132 VAL 132 158 158 VAL VAL B . n A 1 133 ASP 133 159 159 ASP ASP B . n A 1 134 PRO 134 160 160 PRO PRO B . n A 1 135 SER 135 161 161 SER SER B . n A 1 136 ASP 136 162 162 ASP ASP B . n A 1 137 VAL 137 163 163 VAL VAL B . n A 1 138 ARG 138 164 164 ARG ARG B . n A 1 139 HIS 139 165 165 HIS HIS B . n A 1 140 GLN 140 166 166 GLN GLN B . n A 1 141 THR 141 167 167 THR THR B . n A 1 142 GLY 142 168 168 GLY GLY B . n A 1 143 CYS 143 169 169 CYS CYS B . n A 1 144 TYR 144 170 170 TYR TYR B . n A 1 145 LYS 145 171 171 LYS LYS B . n A 1 146 LYS 146 172 172 LYS LYS B . n A 1 147 ALA 147 173 173 ALA ALA B . n A 1 148 PHE 148 174 174 PHE PHE B . n A 1 149 ARG 149 175 175 ARG ARG B . n A 1 150 LYS 150 176 176 LYS LYS B . n A 1 151 HIS 151 177 177 HIS HIS B . n A 1 152 ALA 152 178 178 ALA ALA B . n A 1 153 ASN 153 179 179 ASN ASN B . n A 1 154 LYS 154 180 180 LYS LYS B . n A 1 155 PHE 155 181 181 PHE PHE B . n A 1 156 ASP 156 182 182 ASP ASP B . n A 1 157 GLY 157 183 183 GLY GLY B . n A 1 158 GLN 158 184 184 GLN GLN B . n A 1 159 THR 159 185 185 THR THR B . n A 1 160 ILE 160 186 186 ILE ILE B . n A 1 161 GLN 161 187 187 GLN GLN B . n A 1 162 ASN 162 188 188 ASN ASN B . n A 1 163 TRP 163 189 189 TRP TRP B . n A 1 164 LYS 164 190 190 LYS LYS B . n A 1 165 ASP 165 191 191 ASP ASP B . n A 1 166 ALA 166 192 192 ALA ALA B . n A 1 167 LEU 167 193 193 LEU LEU B . n A 1 168 LYS 168 194 194 LYS LYS B . n A 1 169 LYS 169 195 195 LYS LYS B . n A 1 170 VAL 170 196 196 VAL VAL B . n A 1 171 GLY 171 197 197 GLY GLY B . n A 1 172 ASP 172 198 198 ASP ASP B . n A 1 173 LEU 173 199 199 LEU LEU B . n A 1 174 LYS 174 200 200 LYS LYS B . n A 1 175 GLY 175 201 201 GLY GLY B . n A 1 176 TRP 176 202 202 TRP TRP B . n A 1 177 HIS 177 203 203 HIS HIS B . n A 1 178 ILE 178 204 204 ILE ILE B . n A 1 179 GLY 179 205 205 GLY GLY B . n A 1 180 LYS 180 206 206 LYS LYS B . n A 1 181 ASP 181 207 207 ASP ASP B . n A 1 182 ASP 182 208 208 ASP ASP B . n A 1 183 GLU 183 209 209 GLU GLU B . n A 1 184 GLN 184 210 210 GLN GLN B . n A 1 185 GLY 185 211 211 GLY GLY B . n A 1 186 ALA 186 212 212 ALA ALA B . n A 1 187 ILE 187 213 213 ILE ILE B . n A 1 188 ALA 188 214 214 ALA ALA B . n A 1 189 ASP 189 215 215 ASP ASP B . n A 1 190 LYS 190 216 216 LYS LYS B . n A 1 191 VAL 191 217 217 VAL VAL B . n A 1 192 SER 192 218 218 SER SER B . n A 1 193 ALA 193 219 219 ALA ALA B . n A 1 194 ASP 194 220 220 ASP ASP B . n A 1 195 ILE 195 221 221 ILE ILE B . n A 1 196 TRP 196 222 222 TRP TRP B . n A 1 197 SER 197 223 223 SER SER B . n A 1 198 HIS 198 224 224 HIS HIS B . n A 1 199 ILE 199 225 225 ILE ILE B . n A 1 200 SER 200 226 226 SER SER B . n A 1 201 LYS 201 227 227 LYS LYS B . n A 1 202 GLU 202 228 228 GLU GLU B . n A 1 203 ASN 203 229 ? ? ? B . n A 1 204 LEU 204 230 ? ? ? B . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 wubin@ntu.edu.sg Bin Wu ? 'principal investigator/group leader' 0000-0002-0883-8006 3 schlef@mpipz.mpg.de Paul Schulze-Lefert ? 'principal investigator/group leader' 0000-0002-8978-1717 4 chai@mpipz.mpg.de Jijie Chai ? 'principal investigator/group leader' 0000-0001-7591-3873 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ACK _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id ACK _pdbx_nonpoly_scheme.auth_mon_id ACK _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 700 ? 1 MORE 1 ? 1 'SSA (A^2)' 9930 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-01 2 'Structure model' 1 1 2022-06-08 3 'Structure model' 1 2 2022-07-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 3 'Structure model' '_citation.journal_volume' 9 3 'Structure model' '_citation.page_first' 10 3 'Structure model' '_citation.page_last' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.18rc5_3822: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7VU8 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7VU8 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 146 _em_3d_fitting.ref_protocol 'BACKBONE TRACE' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7VU8 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details 'Phenix real space refinement, based on D99 cut off value of 0.143.' _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 91302 _em_3d_reconstruction.resolution 3.0 _em_3d_reconstruction.resolution_method OTHER _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.2 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'One centrally located TIR domain within the complex' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 7VU8 _em_image_scans.id 1 _em_image_scans.dimension_height 4092 _em_image_scans.dimension_width 5760 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 10 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 7VU8 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7VU8 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7VU8 _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER B 66 ? ? -173.06 132.05 2 1 ASP B 71 ? ? -94.53 -63.79 3 1 GLN B 75 ? ? -82.49 -73.80 4 1 LEU B 98 ? ? 58.25 -123.68 5 1 ASN B 107 ? ? -98.42 -76.98 6 1 PRO B 147 ? ? -78.28 21.78 7 1 PRO B 160 ? ? -84.52 31.90 8 1 GLN B 166 ? ? 55.92 17.62 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B ASN 27 ? A ASN 1 2 1 Y 1 B SER 28 ? A SER 2 3 1 Y 1 B LYS 29 ? A LYS 3 4 1 Y 1 B ASP 30 ? A ASP 4 5 1 Y 1 B SER 31 ? A SER 5 6 1 Y 1 B ILE 32 ? A ILE 6 7 1 Y 1 B VAL 33 ? A VAL 7 8 1 Y 1 B ASN 34 ? A ASN 8 9 1 Y 1 B ASP 35 ? A ASP 9 10 1 Y 1 B ASP 36 ? A ASP 10 11 1 Y 1 B ASP 37 ? A ASP 11 12 1 Y 1 B ASP 38 ? A ASP 12 13 1 Y 1 B SER 39 ? A SER 13 14 1 Y 1 B THR 40 ? A THR 14 15 1 Y 1 B SER 41 ? A SER 15 16 1 Y 1 B GLU 42 ? A GLU 16 17 1 Y 1 B VAL 43 ? A VAL 17 18 1 Y 1 B ASP 44 ? A ASP 18 19 1 Y 1 B ALA 45 ? A ALA 19 20 1 Y 1 B ILE 46 ? A ILE 20 21 1 Y 1 B PRO 47 ? A PRO 21 22 1 Y 1 B ASP 48 ? A ASP 22 23 1 Y 1 B SER 49 ? A SER 23 24 1 Y 1 B THR 50 ? A THR 24 25 1 Y 1 B ASN 51 ? A ASN 25 26 1 Y 1 B PRO 52 ? A PRO 26 27 1 Y 1 B SER 53 ? A SER 27 28 1 Y 1 B GLY 54 ? A GLY 28 29 1 Y 1 B SER 55 ? A SER 29 30 1 Y 1 B PHE 56 ? A PHE 30 31 1 Y 1 B PRO 57 ? A PRO 31 32 1 Y 1 B SER 58 ? A SER 32 33 1 Y 1 B ASN 229 ? A ASN 203 34 1 Y 1 B LEU 230 ? A LEU 204 # _em_buffer_component.buffer_id 1 _em_buffer_component.id 1 _em_buffer_component.concentration ? _em_buffer_component.concentration_units ? _em_buffer_component.formula ? _em_buffer_component.name PBS # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 3702 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Arabidopsis thaliana' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.average_exposure_time 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 3 _em_image_recording.num_real_images 10637 _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? PHENIX 1.19.2 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? RELION ? 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.19.2 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id ACK _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id ACK _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;2',3'- cyclic AMP ; _pdbx_entity_nonpoly.comp_id ACK # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #