data_7VU9 # _entry.id 7VU9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7VU9 pdb_00007vu9 10.2210/pdb7vu9/pdb WWPDB D_1300025259 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7VU9 _pdbx_database_status.recvd_initial_deposition_date 2021-11-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yamasaki, K.' 1 ? 'Yamasaki, T.' 2 ? 'Kubota, T.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Febs J.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1742-464X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 290 _citation.language ? _citation.page_first 412 _citation.page_last 427 _citation.title 'Core fucose-specific Pholiota squarrosa lectin (PhoSL) as a potent broad-spectrum inhibitor of SARS-CoV-2 infection.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1111/febs.16599 _citation.pdbx_database_id_PubMed 36007953 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yamasaki, K.' 1 ? primary 'Adachi, N.' 2 ? primary 'Ngwe Tun, M.M.' 3 ? primary 'Ikeda, A.' 4 ? primary 'Moriya, T.' 5 ? primary 'Kawasaki, M.' 6 ? primary 'Yamasaki, T.' 7 ? primary 'Kubota, T.' 8 ? primary 'Nagashima, I.' 9 ? primary 'Shimizu, H.' 10 ? primary 'Tateno, H.' 11 ? primary 'Morita, K.' 12 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7VU9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 126.739 _cell.length_a_esd ? _cell.length_b 127.057 _cell.length_b_esd ? _cell.length_c 39.418 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 48 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Lectin (PhoSL)' 4440.958 6 ? ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose' 570.542 6 ? ? ? ? 3 non-polymer syn 'FORMIC ACID' 46.025 6 ? ? ? ? 4 water nat water 18.015 154 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code APVPVTKLVCDGDTYKCTAYLDYGDGKWVAQWDTAVFHTT _entity_poly.pdbx_seq_one_letter_code_can APVPVTKLVCDGDTYKCTAYLDYGDGKWVAQWDTAVFHTT _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 VAL n 1 4 PRO n 1 5 VAL n 1 6 THR n 1 7 LYS n 1 8 LEU n 1 9 VAL n 1 10 CYS n 1 11 ASP n 1 12 GLY n 1 13 ASP n 1 14 THR n 1 15 TYR n 1 16 LYS n 1 17 CYS n 1 18 THR n 1 19 ALA n 1 20 TYR n 1 21 LEU n 1 22 ASP n 1 23 TYR n 1 24 GLY n 1 25 ASP n 1 26 GLY n 1 27 LYS n 1 28 TRP n 1 29 VAL n 1 30 ALA n 1 31 GLN n 1 32 TRP n 1 33 ASP n 1 34 THR n 1 35 ALA n 1 36 VAL n 1 37 PHE n 1 38 HIS n 1 39 THR n 1 40 THR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 40 _pdbx_entity_src_syn.organism_scientific 'Pholiota squarrosa' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 75321 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A384E107_9AGAR _struct_ref.pdbx_db_accession A0A384E107 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code APVPVTKLVCDGDTYKCTAYLDYGDGKWVAQWDTAVFHTT _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7VU9 A 1 ? 40 ? A0A384E107 1 ? 40 ? 1 40 2 1 7VU9 B 1 ? 40 ? A0A384E107 1 ? 40 ? 1 40 3 1 7VU9 C 1 ? 40 ? A0A384E107 1 ? 40 ? 1 40 4 1 7VU9 D 1 ? 40 ? A0A384E107 1 ? 40 ? 1 40 5 1 7VU9 E 1 ? 40 ? A0A384E107 1 ? 40 ? 1 40 6 1 7VU9 F 1 ? 40 ? A0A384E107 1 ? 40 ? 1 40 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7VU9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.98 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '4.3 M sodium formate (pH 7.0)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-10-23 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7VU9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.154 _reflns.d_resolution_low 44.87 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17730 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.50 _reflns.pdbx_Rmerge_I_obs 0.087 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.18 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.154 _reflns_shell.d_res_low 2.28 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.81 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 5358 _reflns_shell.percent_possible_all 99.3 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.661 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.43 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.684 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.064 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] -0.041 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -0.023 _refine.B_iso_max ? _refine.B_iso_mean 38.896 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7VU9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.154 _refine.ls_d_res_low 44.865 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17729 _refine.ls_number_reflns_R_free 887 _refine.ls_number_reflns_R_work 16842 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.842 _refine.ls_percent_reflns_R_free 5.003 _refine.ls_R_factor_all 0.182 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2446 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1788 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6A86 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.216 _refine.pdbx_overall_ESU_R_Free 0.199 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 6.909 _refine.overall_SU_ML 0.162 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1878 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 252 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 2284 _refine_hist.d_res_high 2.154 _refine_hist.d_res_low 44.865 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.013 2230 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.018 1890 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.774 1.818 3094 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.210 1.746 4430 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 18.712 5.670 261 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 26.700 24.667 75 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 16.832 15.000 252 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 26.075 15.000 4 ? r_dihedral_angle_other_3_deg ? ? 'X-RAY DIFFRACTION' ? 0.076 0.200 366 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.020 2534 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 446 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.192 0.200 283 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.187 0.200 1571 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.171 0.200 1028 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.083 0.200 933 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.153 0.200 127 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.197 0.200 15 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.249 0.200 45 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.271 0.200 20 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 3.326 3.886 972 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 3.324 3.887 973 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 5.139 5.782 1208 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 5.138 5.786 1209 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 4.206 4.285 1257 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 4.208 4.285 1255 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 6.243 6.274 1880 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 6.242 6.274 1881 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 7.923 45.266 2291 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 7.943 45.079 2274 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.154 2.210 1293 . 64 1218 99.1493 . 0.306 . 0.439 . 0.300 . . . . . 0.293 . 20 . 0.855 0.767 'X-RAY DIFFRACTION' 2.210 2.270 1244 . 62 1180 99.8392 . 0.286 . 0.353 . 0.282 . . . . . 0.274 . 20 . 0.841 0.809 'X-RAY DIFFRACTION' 2.270 2.336 1229 . 62 1167 100.0000 . 0.297 . 0.336 . 0.294 . . . . . 0.282 . 20 . 0.832 0.815 'X-RAY DIFFRACTION' 2.336 2.408 1178 . 59 1118 99.9151 . 0.294 . 0.383 . 0.289 . . . . . 0.274 . 20 . 0.836 0.769 'X-RAY DIFFRACTION' 2.408 2.486 1162 . 58 1104 100.0000 . 0.278 . 0.321 . 0.275 . . . . . 0.250 . 20 . 0.872 0.869 'X-RAY DIFFRACTION' 2.486 2.573 1105 . 55 1050 100.0000 . 0.244 . 0.341 . 0.239 . . . . . 0.215 . 20 . 0.894 0.840 'X-RAY DIFFRACTION' 2.573 2.670 1083 . 54 1029 100.0000 . 0.229 . 0.295 . 0.226 . . . . . 0.201 . 20 . 0.882 0.850 'X-RAY DIFFRACTION' 2.670 2.779 1046 . 52 994 100.0000 . 0.208 . 0.235 . 0.206 . . . . . 0.183 . 20 . 0.910 0.904 'X-RAY DIFFRACTION' 2.779 2.902 994 . 50 943 99.8994 . 0.207 . 0.294 . 0.202 . . . . . 0.187 . 20 . 0.925 0.895 'X-RAY DIFFRACTION' 2.902 3.043 964 . 48 916 100.0000 . 0.216 . 0.289 . 0.212 . . . . . 0.198 . 20 . 0.932 0.913 'X-RAY DIFFRACTION' 3.043 3.207 903 . 45 858 100.0000 . 0.207 . 0.264 . 0.204 . . . . . 0.192 . 20 . 0.938 0.925 'X-RAY DIFFRACTION' 3.207 3.400 871 . 44 826 99.8852 . 0.190 . 0.260 . 0.186 . . . . . 0.176 . 20 . 0.948 0.931 'X-RAY DIFFRACTION' 3.400 3.633 832 . 41 790 99.8798 . 0.177 . 0.264 . 0.173 . . . . . 0.170 . 20 . 0.961 0.932 'X-RAY DIFFRACTION' 3.633 3.922 772 . 39 732 99.8705 . 0.137 . 0.180 . 0.135 . . . . . 0.138 . 20 . 0.970 0.966 'X-RAY DIFFRACTION' 3.922 4.294 693 . 35 657 99.8557 . 0.117 . 0.149 . 0.115 . . . . . 0.124 . 20 . 0.980 0.976 'X-RAY DIFFRACTION' 4.294 4.795 649 . 32 617 100.0000 . 0.101 . 0.184 . 0.097 . . . . . 0.109 . 20 . 0.985 0.969 'X-RAY DIFFRACTION' 4.795 5.526 583 . 29 554 100.0000 . 0.115 . 0.138 . 0.114 . . . . . 0.127 . 20 . 0.985 0.978 'X-RAY DIFFRACTION' 5.526 6.743 497 . 25 470 99.5976 . 0.147 . 0.226 . 0.144 . . . . . 0.147 . 20 . 0.976 0.952 'X-RAY DIFFRACTION' 6.743 9.429 397 . 20 376 99.7481 . 0.174 . 0.224 . 0.172 . . . . . 0.189 . 20 . 0.974 0.962 'X-RAY DIFFRACTION' 9.429 44.865 258 . 13 242 98.8372 . 0.196 . 0.273 . 0.193 . . . . . 0.238 . 20 . 0.971 0.931 # _struct.entry_id 7VU9 _struct.title 'Pholiota squarrosa lectin (PhoSL) in complex with fucose(alpha1-6)[GlcNAc(beta1-4)]GlcNAc' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7VU9 _struct_keywords.text 'Lectin, Trimer, Fucose, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 4 ? T N N 4 ? U N N 4 ? V N N 4 ? W N N 4 ? X N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 10 SG A ? ? 1_555 A CYS 17 SG A ? A CYS 10 A CYS 17 1_555 ? ? ? ? ? ? ? 2.059 ? ? disulf2 disulf ? ? B CYS 10 SG A ? ? 1_555 B CYS 17 SG A ? B CYS 10 B CYS 17 1_555 ? ? ? ? ? ? ? 2.080 ? ? disulf3 disulf ? ? C CYS 10 SG ? ? ? 1_555 C CYS 17 SG ? ? C CYS 10 C CYS 17 1_555 ? ? ? ? ? ? ? 2.150 ? ? disulf4 disulf ? ? D CYS 10 SG ? ? ? 1_555 D CYS 17 SG ? ? D CYS 10 D CYS 17 1_555 ? ? ? ? ? ? ? 2.996 ? ? disulf5 disulf ? ? F CYS 10 SG ? ? ? 1_555 F CYS 17 SG ? ? F CYS 10 F CYS 17 1_555 ? ? ? ? ? ? ? 2.141 ? ? covale1 covale both ? G NAG . O4 ? ? ? 1_555 G NAG . C1 ? ? G NAG 1 G NAG 2 1_555 ? ? ? ? ? ? ? 1.417 ? ? covale2 covale both ? G NAG . O6 ? ? ? 1_555 G FUC . C1 ? ? G NAG 1 G FUC 3 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale3 covale both ? H NAG . O4 ? ? ? 1_555 H NAG . C1 ? ? H NAG 1 H NAG 2 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale4 covale both ? H NAG . O6 ? ? ? 1_555 H FUC . C1 ? ? H NAG 1 H FUC 3 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale5 covale both ? I NAG . O4 ? ? ? 1_555 I NAG . C1 ? ? I NAG 1 I NAG 2 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale6 covale both ? I NAG . O6 ? ? ? 1_555 I FUC . C1 ? ? I NAG 1 I FUC 3 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale7 covale both ? J NAG . O4 ? ? ? 1_555 J NAG . C1 ? ? J NAG 1 J NAG 2 1_555 ? ? ? ? ? ? ? 1.415 ? ? covale8 covale both ? J NAG . O6 ? ? ? 1_555 J FUC . C1 ? ? J NAG 1 J FUC 3 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale9 covale both ? K NAG . O4 ? ? ? 1_555 K NAG . C1 ? ? K NAG 1 K NAG 2 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale10 covale both ? K NAG . O6 ? ? ? 1_555 K FUC . C1 ? ? K NAG 1 K FUC 3 1_555 ? ? ? ? ? ? ? 1.449 ? ? covale11 covale both ? L NAG . O4 ? ? ? 1_555 L NAG . C1 ? ? L NAG 1 L NAG 2 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale12 covale both ? L NAG . O6 ? ? ? 1_555 L FUC . C1 ? ? L NAG 1 L FUC 3 1_555 ? ? ? ? ? ? ? 1.444 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 12 ? AA2 ? 12 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 1 5 ? anti-parallel AA1 1 9 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 8 ? anti-parallel AA1 4 11 ? anti-parallel AA1 5 6 ? anti-parallel AA1 5 9 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 12 ? anti-parallel AA1 9 10 ? anti-parallel AA1 10 11 ? anti-parallel AA2 1 2 ? anti-parallel AA2 1 5 ? anti-parallel AA2 1 9 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 8 ? anti-parallel AA2 4 11 ? anti-parallel AA2 5 6 ? anti-parallel AA2 5 9 ? anti-parallel AA2 6 7 ? anti-parallel AA2 7 12 ? anti-parallel AA2 9 10 ? anti-parallel AA2 10 11 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PRO A 2 ? ASP A 11 ? PRO A 2 ASP A 11 AA1 2 LYS A 16 ? LEU A 21 ? LYS A 16 LEU A 21 AA1 3 TRP A 28 ? ASP A 33 ? TRP A 28 ASP A 33 AA1 4 ALA A 35 ? HIS A 38 ? ALA A 35 HIS A 38 AA1 5 PRO B 2 ? ASP B 11 ? PRO B 2 ASP B 11 AA1 6 LYS B 16 ? LEU B 21 ? LYS B 16 LEU B 21 AA1 7 TRP B 28 ? ASP B 33 ? TRP B 28 ASP B 33 AA1 8 ALA B 35 ? HIS B 38 ? ALA B 35 HIS B 38 AA1 9 PRO C 2 ? ASP C 11 ? PRO C 2 ASP C 11 AA1 10 LYS C 16 ? LEU C 21 ? LYS C 16 LEU C 21 AA1 11 TRP C 28 ? ASP C 33 ? TRP C 28 ASP C 33 AA1 12 ALA C 35 ? HIS C 38 ? ALA C 35 HIS C 38 AA2 1 PRO D 2 ? ASP D 11 ? PRO D 2 ASP D 11 AA2 2 LYS D 16 ? LEU D 21 ? LYS D 16 LEU D 21 AA2 3 TRP D 28 ? ASP D 33 ? TRP D 28 ASP D 33 AA2 4 ALA D 35 ? HIS D 38 ? ALA D 35 HIS D 38 AA2 5 PRO E 2 ? ASP E 11 ? PRO E 2 ASP E 11 AA2 6 LYS E 16 ? LEU E 21 ? LYS E 16 LEU E 21 AA2 7 TRP E 28 ? ASP E 33 ? TRP E 28 ASP E 33 AA2 8 ALA E 35 ? HIS E 38 ? ALA E 35 HIS E 38 AA2 9 VAL F 3 ? ASP F 11 ? VAL F 3 ASP F 11 AA2 10 LYS F 16 ? LEU F 21 ? LYS F 16 LEU F 21 AA2 11 TRP F 28 ? ASP F 33 ? TRP F 28 ASP F 33 AA2 12 ALA F 35 ? HIS F 38 ? ALA F 35 HIS F 38 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 9 ? N VAL A 9 O THR A 18 ? O THR A 18 AA1 1 5 N VAL A 3 ? N VAL A 3 O CYS B 10 ? O CYS B 10 AA1 1 9 N CYS A 10 ? N CYS A 10 O VAL C 3 ? O VAL C 3 AA1 2 3 N ALA A 19 ? N ALA A 19 O ALA A 30 ? O ALA A 30 AA1 3 8 N GLN A 31 ? N GLN A 31 O ALA B 35 ? O ALA B 35 AA1 4 11 N ALA A 35 ? N ALA A 35 O GLN C 31 ? O GLN C 31 AA1 5 6 N THR B 6 ? N THR B 6 O TYR B 20 ? O TYR B 20 AA1 5 9 N VAL B 3 ? N VAL B 3 O CYS C 10 ? O CYS C 10 AA1 6 7 N ALA B 19 ? N ALA B 19 O ALA B 30 ? O ALA B 30 AA1 7 12 N GLN B 31 ? N GLN B 31 O ALA C 35 ? O ALA C 35 AA1 9 10 N LYS C 7 ? N LYS C 7 O TYR C 20 ? O TYR C 20 AA1 10 11 N ALA C 19 ? N ALA C 19 O ALA C 30 ? O ALA C 30 AA2 1 2 N VAL D 9 ? N VAL D 9 O THR D 18 ? O THR D 18 AA2 1 5 N VAL D 3 ? N VAL D 3 O CYS E 10 ? O CYS E 10 AA2 1 9 N CYS D 10 ? N CYS D 10 O VAL F 3 ? O VAL F 3 AA2 2 3 N ALA D 19 ? N ALA D 19 O ALA D 30 ? O ALA D 30 AA2 3 8 N GLN D 31 ? N GLN D 31 O ALA E 35 ? O ALA E 35 AA2 4 11 N ALA D 35 ? N ALA D 35 O GLN F 31 ? O GLN F 31 AA2 5 6 N VAL E 9 ? N VAL E 9 O THR E 18 ? O THR E 18 AA2 5 9 N VAL E 3 ? N VAL E 3 O CYS F 10 ? O CYS F 10 AA2 6 7 N ALA E 19 ? N ALA E 19 O ALA E 30 ? O ALA E 30 AA2 7 12 N VAL E 29 ? N VAL E 29 O PHE F 37 ? O PHE F 37 AA2 9 10 N THR F 6 ? N THR F 6 O TYR F 20 ? O TYR F 20 AA2 10 11 N ALA F 19 ? N ALA F 19 O ALA F 30 ? O ALA F 30 # _atom_sites.entry_id 7VU9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.007890 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007870 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025369 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 S 16 16 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 1.056 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 THR 40 40 40 THR THR A . n B 1 1 ALA 1 1 1 ALA ALA B . n B 1 2 PRO 2 2 2 PRO PRO B . n B 1 3 VAL 3 3 3 VAL VAL B . n B 1 4 PRO 4 4 4 PRO PRO B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 THR 6 6 6 THR THR B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 VAL 9 9 9 VAL VAL B . n B 1 10 CYS 10 10 10 CYS CYS B . n B 1 11 ASP 11 11 11 ASP ASP B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 ASP 13 13 13 ASP ASP B . n B 1 14 THR 14 14 14 THR THR B . n B 1 15 TYR 15 15 15 TYR TYR B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 CYS 17 17 17 CYS CYS B . n B 1 18 THR 18 18 18 THR THR B . n B 1 19 ALA 19 19 19 ALA ALA B . n B 1 20 TYR 20 20 20 TYR TYR B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 ASP 22 22 22 ASP ASP B . n B 1 23 TYR 23 23 23 TYR TYR B . n B 1 24 GLY 24 24 24 GLY GLY B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 TRP 28 28 28 TRP TRP B . n B 1 29 VAL 29 29 29 VAL VAL B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 GLN 31 31 31 GLN GLN B . n B 1 32 TRP 32 32 32 TRP TRP B . n B 1 33 ASP 33 33 33 ASP ASP B . n B 1 34 THR 34 34 34 THR THR B . n B 1 35 ALA 35 35 35 ALA ALA B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 PHE 37 37 37 PHE PHE B . n B 1 38 HIS 38 38 38 HIS HIS B . n B 1 39 THR 39 39 39 THR THR B . n B 1 40 THR 40 40 40 THR THR B . n C 1 1 ALA 1 1 1 ALA ALA C . n C 1 2 PRO 2 2 2 PRO PRO C . n C 1 3 VAL 3 3 3 VAL VAL C . n C 1 4 PRO 4 4 4 PRO PRO C . n C 1 5 VAL 5 5 5 VAL VAL C . n C 1 6 THR 6 6 6 THR THR C . n C 1 7 LYS 7 7 7 LYS LYS C . n C 1 8 LEU 8 8 8 LEU LEU C . n C 1 9 VAL 9 9 9 VAL VAL C . n C 1 10 CYS 10 10 10 CYS CYS C . n C 1 11 ASP 11 11 11 ASP ASP C . n C 1 12 GLY 12 12 12 GLY GLY C . n C 1 13 ASP 13 13 13 ASP ASP C . n C 1 14 THR 14 14 14 THR THR C . n C 1 15 TYR 15 15 15 TYR TYR C . n C 1 16 LYS 16 16 16 LYS LYS C . n C 1 17 CYS 17 17 17 CYS CYS C . n C 1 18 THR 18 18 18 THR THR C . n C 1 19 ALA 19 19 19 ALA ALA C . n C 1 20 TYR 20 20 20 TYR TYR C . n C 1 21 LEU 21 21 21 LEU LEU C . n C 1 22 ASP 22 22 22 ASP ASP C . n C 1 23 TYR 23 23 23 TYR TYR C . n C 1 24 GLY 24 24 24 GLY GLY C . n C 1 25 ASP 25 25 25 ASP ASP C . n C 1 26 GLY 26 26 26 GLY GLY C . n C 1 27 LYS 27 27 27 LYS LYS C . n C 1 28 TRP 28 28 28 TRP TRP C . n C 1 29 VAL 29 29 29 VAL VAL C . n C 1 30 ALA 30 30 30 ALA ALA C . n C 1 31 GLN 31 31 31 GLN GLN C . n C 1 32 TRP 32 32 32 TRP TRP C . n C 1 33 ASP 33 33 33 ASP ASP C . n C 1 34 THR 34 34 34 THR THR C . n C 1 35 ALA 35 35 35 ALA ALA C . n C 1 36 VAL 36 36 36 VAL VAL C . n C 1 37 PHE 37 37 37 PHE PHE C . n C 1 38 HIS 38 38 38 HIS HIS C . n C 1 39 THR 39 39 39 THR THR C . n C 1 40 THR 40 40 40 THR THR C . n D 1 1 ALA 1 1 1 ALA ALA D . n D 1 2 PRO 2 2 2 PRO PRO D . n D 1 3 VAL 3 3 3 VAL VAL D . n D 1 4 PRO 4 4 4 PRO PRO D . n D 1 5 VAL 5 5 5 VAL VAL D . n D 1 6 THR 6 6 6 THR THR D . n D 1 7 LYS 7 7 7 LYS LYS D . n D 1 8 LEU 8 8 8 LEU LEU D . n D 1 9 VAL 9 9 9 VAL VAL D . n D 1 10 CYS 10 10 10 CYS CYS D . n D 1 11 ASP 11 11 11 ASP ASP D . n D 1 12 GLY 12 12 12 GLY GLY D . n D 1 13 ASP 13 13 13 ASP ASP D . n D 1 14 THR 14 14 14 THR THR D . n D 1 15 TYR 15 15 15 TYR TYR D . n D 1 16 LYS 16 16 16 LYS LYS D . n D 1 17 CYS 17 17 17 CYS CYS D . n D 1 18 THR 18 18 18 THR THR D . n D 1 19 ALA 19 19 19 ALA ALA D . n D 1 20 TYR 20 20 20 TYR TYR D . n D 1 21 LEU 21 21 21 LEU LEU D . n D 1 22 ASP 22 22 22 ASP ASP D . n D 1 23 TYR 23 23 23 TYR TYR D . n D 1 24 GLY 24 24 24 GLY GLY D . n D 1 25 ASP 25 25 25 ASP ASP D . n D 1 26 GLY 26 26 26 GLY GLY D . n D 1 27 LYS 27 27 27 LYS LYS D . n D 1 28 TRP 28 28 28 TRP TRP D . n D 1 29 VAL 29 29 29 VAL VAL D . n D 1 30 ALA 30 30 30 ALA ALA D . n D 1 31 GLN 31 31 31 GLN GLN D . n D 1 32 TRP 32 32 32 TRP TRP D . n D 1 33 ASP 33 33 33 ASP ASP D . n D 1 34 THR 34 34 34 THR THR D . n D 1 35 ALA 35 35 35 ALA ALA D . n D 1 36 VAL 36 36 36 VAL VAL D . n D 1 37 PHE 37 37 37 PHE PHE D . n D 1 38 HIS 38 38 38 HIS HIS D . n D 1 39 THR 39 39 39 THR THR D . n D 1 40 THR 40 40 40 THR THR D . n E 1 1 ALA 1 1 1 ALA ALA E . n E 1 2 PRO 2 2 2 PRO PRO E . n E 1 3 VAL 3 3 3 VAL VAL E . n E 1 4 PRO 4 4 4 PRO PRO E . n E 1 5 VAL 5 5 5 VAL VAL E . n E 1 6 THR 6 6 6 THR THR E . n E 1 7 LYS 7 7 7 LYS LYS E . n E 1 8 LEU 8 8 8 LEU LEU E . n E 1 9 VAL 9 9 9 VAL VAL E . n E 1 10 CYS 10 10 10 CYS CYS E . n E 1 11 ASP 11 11 11 ASP ASP E . n E 1 12 GLY 12 12 12 GLY GLY E . n E 1 13 ASP 13 13 13 ASP ASP E . n E 1 14 THR 14 14 14 THR THR E . n E 1 15 TYR 15 15 15 TYR TYR E . n E 1 16 LYS 16 16 16 LYS LYS E . n E 1 17 CYS 17 17 17 CYS CYS E . n E 1 18 THR 18 18 18 THR THR E . n E 1 19 ALA 19 19 19 ALA ALA E . n E 1 20 TYR 20 20 20 TYR TYR E . n E 1 21 LEU 21 21 21 LEU LEU E . n E 1 22 ASP 22 22 22 ASP ASP E . n E 1 23 TYR 23 23 23 TYR TYR E . n E 1 24 GLY 24 24 24 GLY GLY E . n E 1 25 ASP 25 25 25 ASP ASP E . n E 1 26 GLY 26 26 26 GLY GLY E . n E 1 27 LYS 27 27 27 LYS LYS E . n E 1 28 TRP 28 28 28 TRP TRP E . n E 1 29 VAL 29 29 29 VAL VAL E . n E 1 30 ALA 30 30 30 ALA ALA E . n E 1 31 GLN 31 31 31 GLN GLN E . n E 1 32 TRP 32 32 32 TRP TRP E . n E 1 33 ASP 33 33 33 ASP ASP E . n E 1 34 THR 34 34 34 THR THR E . n E 1 35 ALA 35 35 35 ALA ALA E . n E 1 36 VAL 36 36 36 VAL VAL E . n E 1 37 PHE 37 37 37 PHE PHE E . n E 1 38 HIS 38 38 38 HIS HIS E . n E 1 39 THR 39 39 39 THR THR E . n E 1 40 THR 40 40 40 THR THR E . n F 1 1 ALA 1 1 1 ALA ALA F . n F 1 2 PRO 2 2 2 PRO PRO F . n F 1 3 VAL 3 3 3 VAL VAL F . n F 1 4 PRO 4 4 4 PRO PRO F . n F 1 5 VAL 5 5 5 VAL VAL F . n F 1 6 THR 6 6 6 THR THR F . n F 1 7 LYS 7 7 7 LYS LYS F . n F 1 8 LEU 8 8 8 LEU LEU F . n F 1 9 VAL 9 9 9 VAL VAL F . n F 1 10 CYS 10 10 10 CYS CYS F . n F 1 11 ASP 11 11 11 ASP ASP F . n F 1 12 GLY 12 12 12 GLY GLY F . n F 1 13 ASP 13 13 13 ASP ASP F . n F 1 14 THR 14 14 14 THR THR F . n F 1 15 TYR 15 15 15 TYR TYR F . n F 1 16 LYS 16 16 16 LYS LYS F . n F 1 17 CYS 17 17 17 CYS CYS F . n F 1 18 THR 18 18 18 THR THR F . n F 1 19 ALA 19 19 19 ALA ALA F . n F 1 20 TYR 20 20 20 TYR TYR F . n F 1 21 LEU 21 21 21 LEU LEU F . n F 1 22 ASP 22 22 22 ASP ASP F . n F 1 23 TYR 23 23 23 TYR TYR F . n F 1 24 GLY 24 24 24 GLY GLY F . n F 1 25 ASP 25 25 25 ASP ASP F . n F 1 26 GLY 26 26 26 GLY GLY F . n F 1 27 LYS 27 27 27 LYS LYS F . n F 1 28 TRP 28 28 28 TRP TRP F . n F 1 29 VAL 29 29 29 VAL VAL F . n F 1 30 ALA 30 30 30 ALA ALA F . n F 1 31 GLN 31 31 31 GLN GLN F . n F 1 32 TRP 32 32 32 TRP TRP F . n F 1 33 ASP 33 33 33 ASP ASP F . n F 1 34 THR 34 34 34 THR THR F . n F 1 35 ALA 35 35 35 ALA ALA F . n F 1 36 VAL 36 36 36 VAL VAL F . n F 1 37 PHE 37 37 37 PHE PHE F . n F 1 38 HIS 38 38 38 HIS HIS F . n F 1 39 THR 39 39 39 THR THR F . n F 1 40 THR 40 40 40 THR THR F . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email k-yamasaki@aist.go.jp _pdbx_contact_author.name_first Kazuhiko _pdbx_contact_author.name_last Yamasaki _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0320-9697 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 FMT 1 201 201 FMT FMT A . N 3 FMT 1 201 201 FMT FMT B . O 3 FMT 1 201 201 FMT FMT C . P 3 FMT 1 201 201 FMT FMT D . Q 3 FMT 1 201 201 FMT FMT E . R 3 FMT 1 201 201 FMT FMT F . S 4 HOH 1 301 9 HOH HOH A . S 4 HOH 2 302 48 HOH HOH A . S 4 HOH 3 303 46 HOH HOH A . S 4 HOH 4 304 39 HOH HOH A . S 4 HOH 5 305 107 HOH HOH A . S 4 HOH 6 306 26 HOH HOH A . S 4 HOH 7 307 1 HOH HOH A . S 4 HOH 8 308 13 HOH HOH A . S 4 HOH 9 309 56 HOH HOH A . S 4 HOH 10 310 33 HOH HOH A . S 4 HOH 11 311 1 HOH HOH A . S 4 HOH 12 312 77 HOH HOH A . S 4 HOH 13 313 97 HOH HOH A . S 4 HOH 14 314 11 HOH HOH A . S 4 HOH 15 315 51 HOH HOH A . S 4 HOH 16 316 11 HOH HOH A . S 4 HOH 17 317 85 HOH HOH A . S 4 HOH 18 318 42 HOH HOH A . S 4 HOH 19 319 18 HOH HOH A . S 4 HOH 20 320 21 HOH HOH A . S 4 HOH 21 321 8 HOH HOH A . S 4 HOH 22 322 38 HOH HOH A . S 4 HOH 23 323 40 HOH HOH A . S 4 HOH 24 324 25 HOH HOH A . S 4 HOH 25 325 82 HOH HOH A . S 4 HOH 26 326 44 HOH HOH A . T 4 HOH 1 301 132 HOH HOH B . T 4 HOH 2 302 144 HOH HOH B . T 4 HOH 3 303 30 HOH HOH B . T 4 HOH 4 304 109 HOH HOH B . T 4 HOH 5 305 6 HOH HOH B . T 4 HOH 6 306 105 HOH HOH B . T 4 HOH 7 307 43 HOH HOH B . T 4 HOH 8 308 24 HOH HOH B . T 4 HOH 9 309 16 HOH HOH B . T 4 HOH 10 310 90 HOH HOH B . T 4 HOH 11 311 89 HOH HOH B . T 4 HOH 12 312 54 HOH HOH B . T 4 HOH 13 313 32 HOH HOH B . T 4 HOH 14 314 73 HOH HOH B . T 4 HOH 15 315 65 HOH HOH B . T 4 HOH 16 316 30 HOH HOH B . T 4 HOH 17 317 9 HOH HOH B . T 4 HOH 18 318 13 HOH HOH B . T 4 HOH 19 319 74 HOH HOH B . T 4 HOH 20 320 67 HOH HOH B . T 4 HOH 21 321 68 HOH HOH B . T 4 HOH 22 322 71 HOH HOH B . T 4 HOH 23 323 131 HOH HOH B . T 4 HOH 24 324 69 HOH HOH B . T 4 HOH 25 325 140 HOH HOH B . T 4 HOH 26 326 53 HOH HOH B . T 4 HOH 27 327 80 HOH HOH B . T 4 HOH 28 328 12 HOH HOH B . T 4 HOH 29 329 114 HOH HOH B . U 4 HOH 1 301 87 HOH HOH C . U 4 HOH 2 302 112 HOH HOH C . U 4 HOH 3 303 49 HOH HOH C . U 4 HOH 4 304 3 HOH HOH C . U 4 HOH 5 305 21 HOH HOH C . U 4 HOH 6 306 8 HOH HOH C . U 4 HOH 7 307 35 HOH HOH C . U 4 HOH 8 308 7 HOH HOH C . U 4 HOH 9 309 125 HOH HOH C . U 4 HOH 10 310 26 HOH HOH C . U 4 HOH 11 311 20 HOH HOH C . U 4 HOH 12 312 12 HOH HOH C . U 4 HOH 13 313 102 HOH HOH C . U 4 HOH 14 314 18 HOH HOH C . U 4 HOH 15 315 3 HOH HOH C . U 4 HOH 16 316 96 HOH HOH C . U 4 HOH 17 317 44 HOH HOH C . U 4 HOH 18 318 45 HOH HOH C . U 4 HOH 19 319 34 HOH HOH C . U 4 HOH 20 320 84 HOH HOH C . U 4 HOH 21 321 21 HOH HOH C . U 4 HOH 22 322 141 HOH HOH C . U 4 HOH 23 323 20 HOH HOH C . U 4 HOH 24 324 35 HOH HOH C . U 4 HOH 25 325 133 HOH HOH C . V 4 HOH 1 301 32 HOH HOH D . V 4 HOH 2 302 88 HOH HOH D . V 4 HOH 3 303 36 HOH HOH D . V 4 HOH 4 304 16 HOH HOH D . V 4 HOH 5 305 2 HOH HOH D . V 4 HOH 6 306 66 HOH HOH D . V 4 HOH 7 307 18 HOH HOH D . V 4 HOH 8 308 26 HOH HOH D . V 4 HOH 9 309 46 HOH HOH D . V 4 HOH 10 310 76 HOH HOH D . V 4 HOH 11 311 30 HOH HOH D . V 4 HOH 12 312 49 HOH HOH D . V 4 HOH 13 313 119 HOH HOH D . V 4 HOH 14 314 63 HOH HOH D . V 4 HOH 15 315 34 HOH HOH D . V 4 HOH 16 316 14 HOH HOH D . V 4 HOH 17 317 60 HOH HOH D . V 4 HOH 18 318 27 HOH HOH D . V 4 HOH 19 319 27 HOH HOH D . V 4 HOH 20 320 10 HOH HOH D . V 4 HOH 21 321 59 HOH HOH D . V 4 HOH 22 322 117 HOH HOH D . V 4 HOH 23 323 16 HOH HOH D . V 4 HOH 24 324 22 HOH HOH D . V 4 HOH 25 325 70 HOH HOH D . V 4 HOH 26 326 91 HOH HOH D . W 4 HOH 1 301 143 HOH HOH E . W 4 HOH 2 302 28 HOH HOH E . W 4 HOH 3 303 61 HOH HOH E . W 4 HOH 4 304 5 HOH HOH E . W 4 HOH 5 305 54 HOH HOH E . W 4 HOH 6 306 120 HOH HOH E . W 4 HOH 7 307 86 HOH HOH E . W 4 HOH 8 308 28 HOH HOH E . W 4 HOH 9 309 1 HOH HOH E . W 4 HOH 10 310 19 HOH HOH E . W 4 HOH 11 311 22 HOH HOH E . W 4 HOH 12 312 13 HOH HOH E . W 4 HOH 13 313 31 HOH HOH E . W 4 HOH 14 314 47 HOH HOH E . W 4 HOH 15 315 55 HOH HOH E . W 4 HOH 16 316 2 HOH HOH E . W 4 HOH 17 317 101 HOH HOH E . W 4 HOH 18 318 92 HOH HOH E . W 4 HOH 19 319 52 HOH HOH E . W 4 HOH 20 320 43 HOH HOH E . W 4 HOH 21 321 9 HOH HOH E . W 4 HOH 22 322 60 HOH HOH E . X 4 HOH 1 301 130 HOH HOH F . X 4 HOH 2 302 28 HOH HOH F . X 4 HOH 3 303 75 HOH HOH F . X 4 HOH 4 304 7 HOH HOH F . X 4 HOH 5 305 24 HOH HOH F . X 4 HOH 6 306 25 HOH HOH F . X 4 HOH 7 307 4 HOH HOH F . X 4 HOH 8 308 15 HOH HOH F . X 4 HOH 9 309 41 HOH HOH F . X 4 HOH 10 310 26 HOH HOH F . X 4 HOH 11 311 40 HOH HOH F . X 4 HOH 12 312 36 HOH HOH F . X 4 HOH 13 313 7 HOH HOH F . X 4 HOH 14 314 134 HOH HOH F . X 4 HOH 15 315 27 HOH HOH F . X 4 HOH 16 316 128 HOH HOH F . X 4 HOH 17 317 17 HOH HOH F . X 4 HOH 18 318 15 HOH HOH F . X 4 HOH 19 319 63 HOH HOH F . X 4 HOH 20 320 58 HOH HOH F . X 4 HOH 21 321 137 HOH HOH F . X 4 HOH 22 322 57 HOH HOH F . X 4 HOH 23 323 139 HOH HOH F . X 4 HOH 24 324 10 HOH HOH F . X 4 HOH 25 325 47 HOH HOH F . X 4 HOH 26 326 123 HOH HOH F . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,G,H,I,M,N,O,S,T,U 2 1 D,E,F,J,K,L,P,Q,R,V,W,X # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7630 ? 1 MORE 17 ? 1 'SSA (A^2)' 6590 ? 2 'ABSA (A^2)' 7710 ? 2 MORE 16 ? 2 'SSA (A^2)' 6500 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 309 ? S HOH . 2 1 B HOH 328 ? T HOH . 3 1 D HOH 312 ? V HOH . 4 1 E HOH 321 ? W HOH . 5 1 F HOH 326 ? X HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-10-12 2 'Structure model' 1 1 2023-02-01 3 'Structure model' 1 2 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.year' 5 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0258 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'Mar 15, 2019' 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'Mar 15, 2019' 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.8.3 4 # _pdbx_entry_details.entry_id 7VU9 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 F _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 304 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 F _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 319 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 CYS N N N N 30 CYS CA C N R 31 CYS C C N N 32 CYS O O N N 33 CYS CB C N N 34 CYS SG S N N 35 CYS OXT O N N 36 CYS H H N N 37 CYS H2 H N N 38 CYS HA H N N 39 CYS HB2 H N N 40 CYS HB3 H N N 41 CYS HG H N N 42 CYS HXT H N N 43 FMT C C N N 44 FMT O1 O N N 45 FMT O2 O N N 46 FMT H H N N 47 FMT HO2 H N N 48 FUC C1 C N R 49 FUC C2 C N S 50 FUC C3 C N R 51 FUC C4 C N S 52 FUC C5 C N S 53 FUC C6 C N N 54 FUC O1 O N N 55 FUC O2 O N N 56 FUC O3 O N N 57 FUC O4 O N N 58 FUC O5 O N N 59 FUC H1 H N N 60 FUC H2 H N N 61 FUC H3 H N N 62 FUC H4 H N N 63 FUC H5 H N N 64 FUC H61 H N N 65 FUC H62 H N N 66 FUC H63 H N N 67 FUC HO1 H N N 68 FUC HO2 H N N 69 FUC HO3 H N N 70 FUC HO4 H N N 71 GLN N N N N 72 GLN CA C N S 73 GLN C C N N 74 GLN O O N N 75 GLN CB C N N 76 GLN CG C N N 77 GLN CD C N N 78 GLN OE1 O N N 79 GLN NE2 N N N 80 GLN OXT O N N 81 GLN H H N N 82 GLN H2 H N N 83 GLN HA H N N 84 GLN HB2 H N N 85 GLN HB3 H N N 86 GLN HG2 H N N 87 GLN HG3 H N N 88 GLN HE21 H N N 89 GLN HE22 H N N 90 GLN HXT H N N 91 GLY N N N N 92 GLY CA C N N 93 GLY C C N N 94 GLY O O N N 95 GLY OXT O N N 96 GLY H H N N 97 GLY H2 H N N 98 GLY HA2 H N N 99 GLY HA3 H N N 100 GLY HXT H N N 101 HIS N N N N 102 HIS CA C N S 103 HIS C C N N 104 HIS O O N N 105 HIS CB C N N 106 HIS CG C Y N 107 HIS ND1 N Y N 108 HIS CD2 C Y N 109 HIS CE1 C Y N 110 HIS NE2 N Y N 111 HIS OXT O N N 112 HIS H H N N 113 HIS H2 H N N 114 HIS HA H N N 115 HIS HB2 H N N 116 HIS HB3 H N N 117 HIS HD1 H N N 118 HIS HD2 H N N 119 HIS HE1 H N N 120 HIS HE2 H N N 121 HIS HXT H N N 122 HOH O O N N 123 HOH H1 H N N 124 HOH H2 H N N 125 LEU N N N N 126 LEU CA C N S 127 LEU C C N N 128 LEU O O N N 129 LEU CB C N N 130 LEU CG C N N 131 LEU CD1 C N N 132 LEU CD2 C N N 133 LEU OXT O N N 134 LEU H H N N 135 LEU H2 H N N 136 LEU HA H N N 137 LEU HB2 H N N 138 LEU HB3 H N N 139 LEU HG H N N 140 LEU HD11 H N N 141 LEU HD12 H N N 142 LEU HD13 H N N 143 LEU HD21 H N N 144 LEU HD22 H N N 145 LEU HD23 H N N 146 LEU HXT H N N 147 LYS N N N N 148 LYS CA C N S 149 LYS C C N N 150 LYS O O N N 151 LYS CB C N N 152 LYS CG C N N 153 LYS CD C N N 154 LYS CE C N N 155 LYS NZ N N N 156 LYS OXT O N N 157 LYS H H N N 158 LYS H2 H N N 159 LYS HA H N N 160 LYS HB2 H N N 161 LYS HB3 H N N 162 LYS HG2 H N N 163 LYS HG3 H N N 164 LYS HD2 H N N 165 LYS HD3 H N N 166 LYS HE2 H N N 167 LYS HE3 H N N 168 LYS HZ1 H N N 169 LYS HZ2 H N N 170 LYS HZ3 H N N 171 LYS HXT H N N 172 NAG C1 C N R 173 NAG C2 C N R 174 NAG C3 C N R 175 NAG C4 C N S 176 NAG C5 C N R 177 NAG C6 C N N 178 NAG C7 C N N 179 NAG C8 C N N 180 NAG N2 N N N 181 NAG O1 O N N 182 NAG O3 O N N 183 NAG O4 O N N 184 NAG O5 O N N 185 NAG O6 O N N 186 NAG O7 O N N 187 NAG H1 H N N 188 NAG H2 H N N 189 NAG H3 H N N 190 NAG H4 H N N 191 NAG H5 H N N 192 NAG H61 H N N 193 NAG H62 H N N 194 NAG H81 H N N 195 NAG H82 H N N 196 NAG H83 H N N 197 NAG HN2 H N N 198 NAG HO1 H N N 199 NAG HO3 H N N 200 NAG HO4 H N N 201 NAG HO6 H N N 202 PHE N N N N 203 PHE CA C N S 204 PHE C C N N 205 PHE O O N N 206 PHE CB C N N 207 PHE CG C Y N 208 PHE CD1 C Y N 209 PHE CD2 C Y N 210 PHE CE1 C Y N 211 PHE CE2 C Y N 212 PHE CZ C Y N 213 PHE OXT O N N 214 PHE H H N N 215 PHE H2 H N N 216 PHE HA H N N 217 PHE HB2 H N N 218 PHE HB3 H N N 219 PHE HD1 H N N 220 PHE HD2 H N N 221 PHE HE1 H N N 222 PHE HE2 H N N 223 PHE HZ H N N 224 PHE HXT H N N 225 PRO N N N N 226 PRO CA C N S 227 PRO C C N N 228 PRO O O N N 229 PRO CB C N N 230 PRO CG C N N 231 PRO CD C N N 232 PRO OXT O N N 233 PRO H H N N 234 PRO HA H N N 235 PRO HB2 H N N 236 PRO HB3 H N N 237 PRO HG2 H N N 238 PRO HG3 H N N 239 PRO HD2 H N N 240 PRO HD3 H N N 241 PRO HXT H N N 242 THR N N N N 243 THR CA C N S 244 THR C C N N 245 THR O O N N 246 THR CB C N R 247 THR OG1 O N N 248 THR CG2 C N N 249 THR OXT O N N 250 THR H H N N 251 THR H2 H N N 252 THR HA H N N 253 THR HB H N N 254 THR HG1 H N N 255 THR HG21 H N N 256 THR HG22 H N N 257 THR HG23 H N N 258 THR HXT H N N 259 TRP N N N N 260 TRP CA C N S 261 TRP C C N N 262 TRP O O N N 263 TRP CB C N N 264 TRP CG C Y N 265 TRP CD1 C Y N 266 TRP CD2 C Y N 267 TRP NE1 N Y N 268 TRP CE2 C Y N 269 TRP CE3 C Y N 270 TRP CZ2 C Y N 271 TRP CZ3 C Y N 272 TRP CH2 C Y N 273 TRP OXT O N N 274 TRP H H N N 275 TRP H2 H N N 276 TRP HA H N N 277 TRP HB2 H N N 278 TRP HB3 H N N 279 TRP HD1 H N N 280 TRP HE1 H N N 281 TRP HE3 H N N 282 TRP HZ2 H N N 283 TRP HZ3 H N N 284 TRP HH2 H N N 285 TRP HXT H N N 286 TYR N N N N 287 TYR CA C N S 288 TYR C C N N 289 TYR O O N N 290 TYR CB C N N 291 TYR CG C Y N 292 TYR CD1 C Y N 293 TYR CD2 C Y N 294 TYR CE1 C Y N 295 TYR CE2 C Y N 296 TYR CZ C Y N 297 TYR OH O N N 298 TYR OXT O N N 299 TYR H H N N 300 TYR H2 H N N 301 TYR HA H N N 302 TYR HB2 H N N 303 TYR HB3 H N N 304 TYR HD1 H N N 305 TYR HD2 H N N 306 TYR HE1 H N N 307 TYR HE2 H N N 308 TYR HH H N N 309 TYR HXT H N N 310 VAL N N N N 311 VAL CA C N S 312 VAL C C N N 313 VAL O O N N 314 VAL CB C N N 315 VAL CG1 C N N 316 VAL CG2 C N N 317 VAL OXT O N N 318 VAL H H N N 319 VAL H2 H N N 320 VAL HA H N N 321 VAL HB H N N 322 VAL HG11 H N N 323 VAL HG12 H N N 324 VAL HG13 H N N 325 VAL HG21 H N N 326 VAL HG22 H N N 327 VAL HG23 H N N 328 VAL HXT H N N 329 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 CYS N CA sing N N 28 CYS N H sing N N 29 CYS N H2 sing N N 30 CYS CA C sing N N 31 CYS CA CB sing N N 32 CYS CA HA sing N N 33 CYS C O doub N N 34 CYS C OXT sing N N 35 CYS CB SG sing N N 36 CYS CB HB2 sing N N 37 CYS CB HB3 sing N N 38 CYS SG HG sing N N 39 CYS OXT HXT sing N N 40 FMT C O1 doub N N 41 FMT C O2 sing N N 42 FMT C H sing N N 43 FMT O2 HO2 sing N N 44 FUC C1 C2 sing N N 45 FUC C1 O1 sing N N 46 FUC C1 O5 sing N N 47 FUC C1 H1 sing N N 48 FUC C2 C3 sing N N 49 FUC C2 O2 sing N N 50 FUC C2 H2 sing N N 51 FUC C3 C4 sing N N 52 FUC C3 O3 sing N N 53 FUC C3 H3 sing N N 54 FUC C4 C5 sing N N 55 FUC C4 O4 sing N N 56 FUC C4 H4 sing N N 57 FUC C5 C6 sing N N 58 FUC C5 O5 sing N N 59 FUC C5 H5 sing N N 60 FUC C6 H61 sing N N 61 FUC C6 H62 sing N N 62 FUC C6 H63 sing N N 63 FUC O1 HO1 sing N N 64 FUC O2 HO2 sing N N 65 FUC O3 HO3 sing N N 66 FUC O4 HO4 sing N N 67 GLN N CA sing N N 68 GLN N H sing N N 69 GLN N H2 sing N N 70 GLN CA C sing N N 71 GLN CA CB sing N N 72 GLN CA HA sing N N 73 GLN C O doub N N 74 GLN C OXT sing N N 75 GLN CB CG sing N N 76 GLN CB HB2 sing N N 77 GLN CB HB3 sing N N 78 GLN CG CD sing N N 79 GLN CG HG2 sing N N 80 GLN CG HG3 sing N N 81 GLN CD OE1 doub N N 82 GLN CD NE2 sing N N 83 GLN NE2 HE21 sing N N 84 GLN NE2 HE22 sing N N 85 GLN OXT HXT sing N N 86 GLY N CA sing N N 87 GLY N H sing N N 88 GLY N H2 sing N N 89 GLY CA C sing N N 90 GLY CA HA2 sing N N 91 GLY CA HA3 sing N N 92 GLY C O doub N N 93 GLY C OXT sing N N 94 GLY OXT HXT sing N N 95 HIS N CA sing N N 96 HIS N H sing N N 97 HIS N H2 sing N N 98 HIS CA C sing N N 99 HIS CA CB sing N N 100 HIS CA HA sing N N 101 HIS C O doub N N 102 HIS C OXT sing N N 103 HIS CB CG sing N N 104 HIS CB HB2 sing N N 105 HIS CB HB3 sing N N 106 HIS CG ND1 sing Y N 107 HIS CG CD2 doub Y N 108 HIS ND1 CE1 doub Y N 109 HIS ND1 HD1 sing N N 110 HIS CD2 NE2 sing Y N 111 HIS CD2 HD2 sing N N 112 HIS CE1 NE2 sing Y N 113 HIS CE1 HE1 sing N N 114 HIS NE2 HE2 sing N N 115 HIS OXT HXT sing N N 116 HOH O H1 sing N N 117 HOH O H2 sing N N 118 LEU N CA sing N N 119 LEU N H sing N N 120 LEU N H2 sing N N 121 LEU CA C sing N N 122 LEU CA CB sing N N 123 LEU CA HA sing N N 124 LEU C O doub N N 125 LEU C OXT sing N N 126 LEU CB CG sing N N 127 LEU CB HB2 sing N N 128 LEU CB HB3 sing N N 129 LEU CG CD1 sing N N 130 LEU CG CD2 sing N N 131 LEU CG HG sing N N 132 LEU CD1 HD11 sing N N 133 LEU CD1 HD12 sing N N 134 LEU CD1 HD13 sing N N 135 LEU CD2 HD21 sing N N 136 LEU CD2 HD22 sing N N 137 LEU CD2 HD23 sing N N 138 LEU OXT HXT sing N N 139 LYS N CA sing N N 140 LYS N H sing N N 141 LYS N H2 sing N N 142 LYS CA C sing N N 143 LYS CA CB sing N N 144 LYS CA HA sing N N 145 LYS C O doub N N 146 LYS C OXT sing N N 147 LYS CB CG sing N N 148 LYS CB HB2 sing N N 149 LYS CB HB3 sing N N 150 LYS CG CD sing N N 151 LYS CG HG2 sing N N 152 LYS CG HG3 sing N N 153 LYS CD CE sing N N 154 LYS CD HD2 sing N N 155 LYS CD HD3 sing N N 156 LYS CE NZ sing N N 157 LYS CE HE2 sing N N 158 LYS CE HE3 sing N N 159 LYS NZ HZ1 sing N N 160 LYS NZ HZ2 sing N N 161 LYS NZ HZ3 sing N N 162 LYS OXT HXT sing N N 163 NAG C1 C2 sing N N 164 NAG C1 O1 sing N N 165 NAG C1 O5 sing N N 166 NAG C1 H1 sing N N 167 NAG C2 C3 sing N N 168 NAG C2 N2 sing N N 169 NAG C2 H2 sing N N 170 NAG C3 C4 sing N N 171 NAG C3 O3 sing N N 172 NAG C3 H3 sing N N 173 NAG C4 C5 sing N N 174 NAG C4 O4 sing N N 175 NAG C4 H4 sing N N 176 NAG C5 C6 sing N N 177 NAG C5 O5 sing N N 178 NAG C5 H5 sing N N 179 NAG C6 O6 sing N N 180 NAG C6 H61 sing N N 181 NAG C6 H62 sing N N 182 NAG C7 C8 sing N N 183 NAG C7 N2 sing N N 184 NAG C7 O7 doub N N 185 NAG C8 H81 sing N N 186 NAG C8 H82 sing N N 187 NAG C8 H83 sing N N 188 NAG N2 HN2 sing N N 189 NAG O1 HO1 sing N N 190 NAG O3 HO3 sing N N 191 NAG O4 HO4 sing N N 192 NAG O6 HO6 sing N N 193 PHE N CA sing N N 194 PHE N H sing N N 195 PHE N H2 sing N N 196 PHE CA C sing N N 197 PHE CA CB sing N N 198 PHE CA HA sing N N 199 PHE C O doub N N 200 PHE C OXT sing N N 201 PHE CB CG sing N N 202 PHE CB HB2 sing N N 203 PHE CB HB3 sing N N 204 PHE CG CD1 doub Y N 205 PHE CG CD2 sing Y N 206 PHE CD1 CE1 sing Y N 207 PHE CD1 HD1 sing N N 208 PHE CD2 CE2 doub Y N 209 PHE CD2 HD2 sing N N 210 PHE CE1 CZ doub Y N 211 PHE CE1 HE1 sing N N 212 PHE CE2 CZ sing Y N 213 PHE CE2 HE2 sing N N 214 PHE CZ HZ sing N N 215 PHE OXT HXT sing N N 216 PRO N CA sing N N 217 PRO N CD sing N N 218 PRO N H sing N N 219 PRO CA C sing N N 220 PRO CA CB sing N N 221 PRO CA HA sing N N 222 PRO C O doub N N 223 PRO C OXT sing N N 224 PRO CB CG sing N N 225 PRO CB HB2 sing N N 226 PRO CB HB3 sing N N 227 PRO CG CD sing N N 228 PRO CG HG2 sing N N 229 PRO CG HG3 sing N N 230 PRO CD HD2 sing N N 231 PRO CD HD3 sing N N 232 PRO OXT HXT sing N N 233 THR N CA sing N N 234 THR N H sing N N 235 THR N H2 sing N N 236 THR CA C sing N N 237 THR CA CB sing N N 238 THR CA HA sing N N 239 THR C O doub N N 240 THR C OXT sing N N 241 THR CB OG1 sing N N 242 THR CB CG2 sing N N 243 THR CB HB sing N N 244 THR OG1 HG1 sing N N 245 THR CG2 HG21 sing N N 246 THR CG2 HG22 sing N N 247 THR CG2 HG23 sing N N 248 THR OXT HXT sing N N 249 TRP N CA sing N N 250 TRP N H sing N N 251 TRP N H2 sing N N 252 TRP CA C sing N N 253 TRP CA CB sing N N 254 TRP CA HA sing N N 255 TRP C O doub N N 256 TRP C OXT sing N N 257 TRP CB CG sing N N 258 TRP CB HB2 sing N N 259 TRP CB HB3 sing N N 260 TRP CG CD1 doub Y N 261 TRP CG CD2 sing Y N 262 TRP CD1 NE1 sing Y N 263 TRP CD1 HD1 sing N N 264 TRP CD2 CE2 doub Y N 265 TRP CD2 CE3 sing Y N 266 TRP NE1 CE2 sing Y N 267 TRP NE1 HE1 sing N N 268 TRP CE2 CZ2 sing Y N 269 TRP CE3 CZ3 doub Y N 270 TRP CE3 HE3 sing N N 271 TRP CZ2 CH2 doub Y N 272 TRP CZ2 HZ2 sing N N 273 TRP CZ3 CH2 sing Y N 274 TRP CZ3 HZ3 sing N N 275 TRP CH2 HH2 sing N N 276 TRP OXT HXT sing N N 277 TYR N CA sing N N 278 TYR N H sing N N 279 TYR N H2 sing N N 280 TYR CA C sing N N 281 TYR CA CB sing N N 282 TYR CA HA sing N N 283 TYR C O doub N N 284 TYR C OXT sing N N 285 TYR CB CG sing N N 286 TYR CB HB2 sing N N 287 TYR CB HB3 sing N N 288 TYR CG CD1 doub Y N 289 TYR CG CD2 sing Y N 290 TYR CD1 CE1 sing Y N 291 TYR CD1 HD1 sing N N 292 TYR CD2 CE2 doub Y N 293 TYR CD2 HD2 sing N N 294 TYR CE1 CZ doub Y N 295 TYR CE1 HE1 sing N N 296 TYR CE2 CZ sing Y N 297 TYR CE2 HE2 sing N N 298 TYR CZ OH sing N N 299 TYR OH HH sing N N 300 TYR OXT HXT sing N N 301 VAL N CA sing N N 302 VAL N H sing N N 303 VAL N H2 sing N N 304 VAL CA C sing N N 305 VAL CA CB sing N N 306 VAL CA HA sing N N 307 VAL C O doub N N 308 VAL C OXT sing N N 309 VAL CB CG1 sing N N 310 VAL CB CG2 sing N N 311 VAL CB HB sing N N 312 VAL CG1 HG11 sing N N 313 VAL CG1 HG12 sing N N 314 VAL CG1 HG13 sing N N 315 VAL CG2 HG21 sing N N 316 VAL CG2 HG22 sing N N 317 VAL CG2 HG23 sing N N 318 VAL OXT HXT sing N N 319 # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 18H02397 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero G 2 NAG 1 G NAG 1 AaA NAG 101 n G 2 NAG 2 G NAG 2 AbA NAG 102 n G 2 FUC 3 G FUC 3 AcA FUC 103 n H 2 NAG 1 H NAG 1 BaB NAG 101 n H 2 NAG 2 H NAG 2 BbB NAG 102 n H 2 FUC 3 H FUC 3 BcB FUC 103 n I 2 NAG 1 I NAG 1 CaC NAG 101 n I 2 NAG 2 I NAG 2 CbC NAG 102 n I 2 FUC 3 I FUC 3 CcC FUC 103 n J 2 NAG 1 J NAG 1 DaD NAG 101 n J 2 NAG 2 J NAG 2 DbD NAG 102 n J 2 FUC 3 J FUC 3 DcD FUC 103 n K 2 NAG 1 K NAG 1 EaE NAG 101 n K 2 NAG 2 K NAG 2 EbE NAG 102 n K 2 FUC 3 K FUC 3 EcE FUC 103 n L 2 NAG 1 L NAG 1 FaF NAG 101 n L 2 NAG 2 L NAG 2 FbF NAG 102 n L 2 FUC 3 L FUC 3 FcF FUC 103 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-1-2/a4-b1_a6-c1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}[(6+1)][a-L-Fucp]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 FUC C1 O1 1 NAG O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 FUC 3 n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 FMT ? ? FMT ? ? 'SUBJECT OF INVESTIGATION' ? 2 FUC ? ? FUC ? ? 'SUBJECT OF INVESTIGATION' ? 3 NAG ? ? NAG ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'FORMIC ACID' FMT 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6A86 _pdbx_initial_refinement_model.details ? # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 cross-linking ? 2 1 'gel filtration' ? 3 2 cross-linking ? 4 2 'gel filtration' ? #