data_7WDN # _entry.id 7WDN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7WDN pdb_00007wdn 10.2210/pdb7wdn/pdb WWPDB D_1300026515 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7WDN _pdbx_database_status.recvd_initial_deposition_date 2021-12-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Watanabe, M.' 1 ? 'Matsuzawa, T.' 2 ? 'Nakamichi, Y.' 3 ? 'Akita, H.' 4 ? 'Yaoi, K.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GW _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Appl.Microbiol.Biotechnol. _citation.journal_id_ASTM AMBIDG _citation.journal_id_CSD 0786 _citation.journal_id_ISSN 1432-0614 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 106 _citation.language ? _citation.page_first 4539 _citation.page_last 4551 _citation.title 'Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1007/s00253-022-12018-6 _citation.pdbx_database_id_PubMed 35723691 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Matsuzawa, T.' 1 0000-0001-9315-5383 primary 'Watanabe, M.' 2 ? primary 'Nakamichi, Y.' 3 ? primary 'Akita, H.' 4 ? primary 'Yaoi, K.' 5 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7WDN _cell.details ? _cell.formula_units_Z ? _cell.length_a 202.488 _cell.length_a_esd ? _cell.length_b 202.488 _cell.length_b_esd ? _cell.length_c 202.488 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 48 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7WDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man beta-glucosidase 52087.996 1 3.2.1.21 ? ? GLC 2 non-polymer man alpha-D-glucopyranose 180.156 4 ? ? ? ? 3 water nat water 18.015 221 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVSTQNEPHRFPPDFQWGVATSSYQIEGAVEADGRSPSIWDTFCARPGAIADGSTGAIANDHYHRYREDIAIMKQLGVNA YRFSIAWPRILPDGRGRVNQAGVDFYERLVDSLLEQGIEPYATLYHWDMPQVQHDRTPWYDRGVVDAFVEYTDVITRRLS DRVKYWMTLNEPWVISFLGYGAGEHAPGLRDKELYLRAAHHVLLAHGKAMPVIRANGNAQTKAGIVLNLNWVNAASDSPE DQAAARRYDQFFNRWFAEPLYNGRYPEELLEWYGRDLVPVQPGDFDIITTPTDFLAVNYYARTTVKAGSTDPMLQVDFVR PPGEYTAMDWEVYPQGLYNILNWLHTDYAPPALYVTENGAAYDDQVSAAGEVDDPQRLAYLEGHFEAAYRAIQAGIPLKG YFVWSLMDNFEWGRGFEKRFGIVFVDYATQQRIIKRSGKWFSQVTRANGLPAPQTTL ; _entity_poly.pdbx_seq_one_letter_code_can ;MVSTQNEPHRFPPDFQWGVATSSYQIEGAVEADGRSPSIWDTFCARPGAIADGSTGAIANDHYHRYREDIAIMKQLGVNA YRFSIAWPRILPDGRGRVNQAGVDFYERLVDSLLEQGIEPYATLYHWDMPQVQHDRTPWYDRGVVDAFVEYTDVITRRLS DRVKYWMTLNEPWVISFLGYGAGEHAPGLRDKELYLRAAHHVLLAHGKAMPVIRANGNAQTKAGIVLNLNWVNAASDSPE DQAAARRYDQFFNRWFAEPLYNGRYPEELLEWYGRDLVPVQPGDFDIITTPTDFLAVNYYARTTVKAGSTDPMLQVDFVR PPGEYTAMDWEVYPQGLYNILNWLHTDYAPPALYVTENGAAYDDQVSAAGEVDDPQRLAYLEGHFEAAYRAIQAGIPLKG YFVWSLMDNFEWGRGFEKRFGIVFVDYATQQRIIKRSGKWFSQVTRANGLPAPQTTL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 SER n 1 4 THR n 1 5 GLN n 1 6 ASN n 1 7 GLU n 1 8 PRO n 1 9 HIS n 1 10 ARG n 1 11 PHE n 1 12 PRO n 1 13 PRO n 1 14 ASP n 1 15 PHE n 1 16 GLN n 1 17 TRP n 1 18 GLY n 1 19 VAL n 1 20 ALA n 1 21 THR n 1 22 SER n 1 23 SER n 1 24 TYR n 1 25 GLN n 1 26 ILE n 1 27 GLU n 1 28 GLY n 1 29 ALA n 1 30 VAL n 1 31 GLU n 1 32 ALA n 1 33 ASP n 1 34 GLY n 1 35 ARG n 1 36 SER n 1 37 PRO n 1 38 SER n 1 39 ILE n 1 40 TRP n 1 41 ASP n 1 42 THR n 1 43 PHE n 1 44 CYS n 1 45 ALA n 1 46 ARG n 1 47 PRO n 1 48 GLY n 1 49 ALA n 1 50 ILE n 1 51 ALA n 1 52 ASP n 1 53 GLY n 1 54 SER n 1 55 THR n 1 56 GLY n 1 57 ALA n 1 58 ILE n 1 59 ALA n 1 60 ASN n 1 61 ASP n 1 62 HIS n 1 63 TYR n 1 64 HIS n 1 65 ARG n 1 66 TYR n 1 67 ARG n 1 68 GLU n 1 69 ASP n 1 70 ILE n 1 71 ALA n 1 72 ILE n 1 73 MET n 1 74 LYS n 1 75 GLN n 1 76 LEU n 1 77 GLY n 1 78 VAL n 1 79 ASN n 1 80 ALA n 1 81 TYR n 1 82 ARG n 1 83 PHE n 1 84 SER n 1 85 ILE n 1 86 ALA n 1 87 TRP n 1 88 PRO n 1 89 ARG n 1 90 ILE n 1 91 LEU n 1 92 PRO n 1 93 ASP n 1 94 GLY n 1 95 ARG n 1 96 GLY n 1 97 ARG n 1 98 VAL n 1 99 ASN n 1 100 GLN n 1 101 ALA n 1 102 GLY n 1 103 VAL n 1 104 ASP n 1 105 PHE n 1 106 TYR n 1 107 GLU n 1 108 ARG n 1 109 LEU n 1 110 VAL n 1 111 ASP n 1 112 SER n 1 113 LEU n 1 114 LEU n 1 115 GLU n 1 116 GLN n 1 117 GLY n 1 118 ILE n 1 119 GLU n 1 120 PRO n 1 121 TYR n 1 122 ALA n 1 123 THR n 1 124 LEU n 1 125 TYR n 1 126 HIS n 1 127 TRP n 1 128 ASP n 1 129 MET n 1 130 PRO n 1 131 GLN n 1 132 VAL n 1 133 GLN n 1 134 HIS n 1 135 ASP n 1 136 ARG n 1 137 THR n 1 138 PRO n 1 139 TRP n 1 140 TYR n 1 141 ASP n 1 142 ARG n 1 143 GLY n 1 144 VAL n 1 145 VAL n 1 146 ASP n 1 147 ALA n 1 148 PHE n 1 149 VAL n 1 150 GLU n 1 151 TYR n 1 152 THR n 1 153 ASP n 1 154 VAL n 1 155 ILE n 1 156 THR n 1 157 ARG n 1 158 ARG n 1 159 LEU n 1 160 SER n 1 161 ASP n 1 162 ARG n 1 163 VAL n 1 164 LYS n 1 165 TYR n 1 166 TRP n 1 167 MET n 1 168 THR n 1 169 LEU n 1 170 ASN n 1 171 GLU n 1 172 PRO n 1 173 TRP n 1 174 VAL n 1 175 ILE n 1 176 SER n 1 177 PHE n 1 178 LEU n 1 179 GLY n 1 180 TYR n 1 181 GLY n 1 182 ALA n 1 183 GLY n 1 184 GLU n 1 185 HIS n 1 186 ALA n 1 187 PRO n 1 188 GLY n 1 189 LEU n 1 190 ARG n 1 191 ASP n 1 192 LYS n 1 193 GLU n 1 194 LEU n 1 195 TYR n 1 196 LEU n 1 197 ARG n 1 198 ALA n 1 199 ALA n 1 200 HIS n 1 201 HIS n 1 202 VAL n 1 203 LEU n 1 204 LEU n 1 205 ALA n 1 206 HIS n 1 207 GLY n 1 208 LYS n 1 209 ALA n 1 210 MET n 1 211 PRO n 1 212 VAL n 1 213 ILE n 1 214 ARG n 1 215 ALA n 1 216 ASN n 1 217 GLY n 1 218 ASN n 1 219 ALA n 1 220 GLN n 1 221 THR n 1 222 LYS n 1 223 ALA n 1 224 GLY n 1 225 ILE n 1 226 VAL n 1 227 LEU n 1 228 ASN n 1 229 LEU n 1 230 ASN n 1 231 TRP n 1 232 VAL n 1 233 ASN n 1 234 ALA n 1 235 ALA n 1 236 SER n 1 237 ASP n 1 238 SER n 1 239 PRO n 1 240 GLU n 1 241 ASP n 1 242 GLN n 1 243 ALA n 1 244 ALA n 1 245 ALA n 1 246 ARG n 1 247 ARG n 1 248 TYR n 1 249 ASP n 1 250 GLN n 1 251 PHE n 1 252 PHE n 1 253 ASN n 1 254 ARG n 1 255 TRP n 1 256 PHE n 1 257 ALA n 1 258 GLU n 1 259 PRO n 1 260 LEU n 1 261 TYR n 1 262 ASN n 1 263 GLY n 1 264 ARG n 1 265 TYR n 1 266 PRO n 1 267 GLU n 1 268 GLU n 1 269 LEU n 1 270 LEU n 1 271 GLU n 1 272 TRP n 1 273 TYR n 1 274 GLY n 1 275 ARG n 1 276 ASP n 1 277 LEU n 1 278 VAL n 1 279 PRO n 1 280 VAL n 1 281 GLN n 1 282 PRO n 1 283 GLY n 1 284 ASP n 1 285 PHE n 1 286 ASP n 1 287 ILE n 1 288 ILE n 1 289 THR n 1 290 THR n 1 291 PRO n 1 292 THR n 1 293 ASP n 1 294 PHE n 1 295 LEU n 1 296 ALA n 1 297 VAL n 1 298 ASN n 1 299 TYR n 1 300 TYR n 1 301 ALA n 1 302 ARG n 1 303 THR n 1 304 THR n 1 305 VAL n 1 306 LYS n 1 307 ALA n 1 308 GLY n 1 309 SER n 1 310 THR n 1 311 ASP n 1 312 PRO n 1 313 MET n 1 314 LEU n 1 315 GLN n 1 316 VAL n 1 317 ASP n 1 318 PHE n 1 319 VAL n 1 320 ARG n 1 321 PRO n 1 322 PRO n 1 323 GLY n 1 324 GLU n 1 325 TYR n 1 326 THR n 1 327 ALA n 1 328 MET n 1 329 ASP n 1 330 TRP n 1 331 GLU n 1 332 VAL n 1 333 TYR n 1 334 PRO n 1 335 GLN n 1 336 GLY n 1 337 LEU n 1 338 TYR n 1 339 ASN n 1 340 ILE n 1 341 LEU n 1 342 ASN n 1 343 TRP n 1 344 LEU n 1 345 HIS n 1 346 THR n 1 347 ASP n 1 348 TYR n 1 349 ALA n 1 350 PRO n 1 351 PRO n 1 352 ALA n 1 353 LEU n 1 354 TYR n 1 355 VAL n 1 356 THR n 1 357 GLU n 1 358 ASN n 1 359 GLY n 1 360 ALA n 1 361 ALA n 1 362 TYR n 1 363 ASP n 1 364 ASP n 1 365 GLN n 1 366 VAL n 1 367 SER n 1 368 ALA n 1 369 ALA n 1 370 GLY n 1 371 GLU n 1 372 VAL n 1 373 ASP n 1 374 ASP n 1 375 PRO n 1 376 GLN n 1 377 ARG n 1 378 LEU n 1 379 ALA n 1 380 TYR n 1 381 LEU n 1 382 GLU n 1 383 GLY n 1 384 HIS n 1 385 PHE n 1 386 GLU n 1 387 ALA n 1 388 ALA n 1 389 TYR n 1 390 ARG n 1 391 ALA n 1 392 ILE n 1 393 GLN n 1 394 ALA n 1 395 GLY n 1 396 ILE n 1 397 PRO n 1 398 LEU n 1 399 LYS n 1 400 GLY n 1 401 TYR n 1 402 PHE n 1 403 VAL n 1 404 TRP n 1 405 SER n 1 406 LEU n 1 407 MET n 1 408 ASP n 1 409 ASN n 1 410 PHE n 1 411 GLU n 1 412 TRP n 1 413 GLY n 1 414 ARG n 1 415 GLY n 1 416 PHE n 1 417 GLU n 1 418 LYS n 1 419 ARG n 1 420 PHE n 1 421 GLY n 1 422 ILE n 1 423 VAL n 1 424 PHE n 1 425 VAL n 1 426 ASP n 1 427 TYR n 1 428 ALA n 1 429 THR n 1 430 GLN n 1 431 GLN n 1 432 ARG n 1 433 ILE n 1 434 ILE n 1 435 LYS n 1 436 ARG n 1 437 SER n 1 438 GLY n 1 439 LYS n 1 440 TRP n 1 441 PHE n 1 442 SER n 1 443 GLN n 1 444 VAL n 1 445 THR n 1 446 ARG n 1 447 ALA n 1 448 ASN n 1 449 GLY n 1 450 LEU n 1 451 PRO n 1 452 ALA n 1 453 PRO n 1 454 GLN n 1 455 THR n 1 456 THR n 1 457 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 457 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name metagenome _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 256318 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A1E1FFN6_9ZZZZ _struct_ref.pdbx_db_accession A0A1E1FFN6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;STQNEPHRFPPDFQWGVATSSYQIEGAVEADGRSPSIWDTFCARPGAIADGSTGAIANDHYHRYREDIAIMKQLGVNAYR FSIAWPRILPDGRGRVNQAGVDFYERLVDSLLEQGIEPYATLYHWDMPQVQHDRTPWYDRGVVDAFVEYTDVITRRLSDR VKYWMTLNEPWVISFLGYGAGEHAPGLRDKELYLRAAHHVLLAHGKAMPVIRANGNAQTKAGIVLNLNWVNAASDSPEDQ AAARRYDQFFNRWFAEPLYNGRYPEELLEWYGRDLVPVQPGDFDIITTPTDFLAVNYYARTTVKAGSTDPMLQVDFVRPP GEYTAMDWEVYPQGLYNILNWLHTDYAPPALYVTENGAAYDDQVSAAGEVDDPQRLAYLEGHFEAAYRAIQAGIPLKGYF VWSLMDNFEWGRGFEKRFGIVFVDYATQQRIIKRSGKWFSQVTRANGLPAPQTT ; _struct_ref.pdbx_align_begin 2 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7WDN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 456 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A1E1FFN6 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 455 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 455 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7WDN MET A 1 ? UNP A0A1E1FFN6 ? ? 'initiating methionine' 0 1 1 7WDN VAL A 2 ? UNP A0A1E1FFN6 ? ? 'expression tag' 1 2 1 7WDN LEU A 457 ? UNP A0A1E1FFN6 ? ? 'expression tag' 456 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose 'alpha-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7WDN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.32 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Tris-HCl buffer (pH 8.5), 1.2 M lithium sulfate, 0.01 M nickel chloride' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-12-08 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7WDN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.8 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 61903 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 25.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.83 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 61901 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.637 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.00 _refine.B_iso_max ? _refine.B_iso_mean 24.276 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.951 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7WDN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.80 _refine.ls_d_res_low 30.00 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 61901 _refine.ls_number_reflns_R_free 3241 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.95 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.16186 _refine.ls_R_factor_R_free 0.21005 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.15934 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5XGZ _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.110 _refine.pdbx_overall_ESU_R_Free 0.096 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 6.004 _refine.overall_SU_ML 0.076 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 30.00 _refine_hist.number_atoms_solvent 221 _refine_hist.number_atoms_total 3865 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 3644 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 0.012 3759 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.009 0.016 3220 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.774 1.648 5134 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.744 1.551 7485 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.768 5.000 443 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 3.743 10.000 32 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 16.292 10.000 539 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.077 0.200 532 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 4372 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.007 0.020 836 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 3.452 2.368 1775 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 3.452 2.368 1775 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 3.956 3.547 2217 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 3.958 3.548 2218 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 5.863 2.784 1984 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 5.864 2.787 1985 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 6.500 4.027 2918 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.928 28.987 4364 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.893 28.704 4323 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 7.741 3.000 6979 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 256 _refine_ls_shell.number_reflns_R_work 4504 _refine_ls_shell.percent_reflns_obs 99.98 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.372 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.401 # _struct.entry_id 7WDN _struct.title 'Crystal structures of MeBglD2 in complex with various saccharides' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7WDN _struct_keywords.text 'glycoside hydrolase family 1, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 22 ? GLU A 27 ? SER A 21 GLU A 26 1 ? 6 HELX_P HELX_P2 AA2 GLU A 31 ? ARG A 35 ? GLU A 30 ARG A 34 5 ? 5 HELX_P HELX_P3 AA3 SER A 38 ? CYS A 44 ? SER A 37 CYS A 43 1 ? 7 HELX_P HELX_P4 AA4 ASP A 61 ? GLY A 77 ? ASP A 60 GLY A 76 1 ? 17 HELX_P HELX_P5 AA5 ALA A 86 ? LEU A 91 ? ALA A 85 LEU A 90 1 ? 6 HELX_P HELX_P6 AA6 ASN A 99 ? GLN A 116 ? ASN A 98 GLN A 115 1 ? 18 HELX_P HELX_P7 AA7 PRO A 130 ? THR A 137 ? PRO A 129 THR A 136 1 ? 8 HELX_P HELX_P8 AA8 GLY A 143 ? SER A 160 ? GLY A 142 SER A 159 1 ? 18 HELX_P HELX_P9 AA9 GLU A 171 ? GLY A 181 ? GLU A 170 GLY A 180 1 ? 11 HELX_P HELX_P10 AB1 ASP A 191 ? ASN A 216 ? ASP A 190 ASN A 215 1 ? 26 HELX_P HELX_P11 AB2 SER A 238 ? ASN A 253 ? SER A 237 ASN A 252 1 ? 16 HELX_P HELX_P12 AB3 ASN A 253 ? GLY A 263 ? ASN A 252 GLY A 262 1 ? 11 HELX_P HELX_P13 AB4 PRO A 266 ? GLY A 274 ? PRO A 265 GLY A 273 1 ? 9 HELX_P HELX_P14 AB5 ARG A 275 ? VAL A 278 ? ARG A 274 VAL A 277 5 ? 4 HELX_P HELX_P15 AB6 GLY A 283 ? THR A 289 ? GLY A 282 THR A 288 1 ? 7 HELX_P HELX_P16 AB7 PRO A 334 ? ALA A 349 ? PRO A 333 ALA A 348 1 ? 16 HELX_P HELX_P17 AB8 ASP A 374 ? ALA A 394 ? ASP A 373 ALA A 393 1 ? 21 HELX_P HELX_P18 AB9 GLU A 411 ? LYS A 418 ? GLU A 410 LYS A 417 5 ? 8 HELX_P HELX_P19 AC1 LYS A 435 ? ASN A 448 ? LYS A 434 ASN A 447 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 186 A . ? ALA 185 A PRO 187 A ? PRO 186 A 1 5.78 2 TRP 404 A . ? TRP 403 A SER 405 A ? SER 404 A 1 12.07 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 9 ? AA2 ? 3 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? parallel AA1 7 8 ? parallel AA1 8 9 ? parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 16 ? ALA A 20 ? GLN A 15 ALA A 19 AA1 2 ALA A 80 ? SER A 84 ? ALA A 79 SER A 83 AA1 3 GLU A 119 ? TYR A 125 ? GLU A 118 TYR A 124 AA1 4 TYR A 165 ? ASN A 170 ? TYR A 164 ASN A 169 AA1 5 LYS A 222 ? ASN A 228 ? LYS A 221 ASN A 227 AA1 6 LEU A 295 ? ASN A 298 ? LEU A 294 ASN A 297 AA1 7 LEU A 353 ? ASN A 358 ? LEU A 352 ASN A 357 AA1 8 LEU A 398 ? TRP A 404 ? LEU A 397 TRP A 403 AA1 9 GLN A 16 ? ALA A 20 ? GLN A 15 ALA A 19 AA2 1 TRP A 231 ? ALA A 234 ? TRP A 230 ALA A 233 AA2 2 ARG A 302 ? ALA A 307 ? ARG A 301 ALA A 306 AA2 3 VAL A 316 ? VAL A 319 ? VAL A 315 VAL A 318 AA3 1 VAL A 423 ? VAL A 425 ? VAL A 422 VAL A 424 AA3 2 ARG A 432 ? ILE A 434 ? ARG A 431 ILE A 433 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 19 ? N VAL A 18 O ARG A 82 ? O ARG A 81 AA1 2 3 N TYR A 81 ? N TYR A 80 O TYR A 121 ? O TYR A 120 AA1 3 4 N LEU A 124 ? N LEU A 123 O MET A 167 ? O MET A 166 AA1 4 5 N TRP A 166 ? N TRP A 165 O LYS A 222 ? O LYS A 221 AA1 5 6 N LEU A 227 ? N LEU A 226 O ALA A 296 ? O ALA A 295 AA1 6 7 N VAL A 297 ? N VAL A 296 O TYR A 354 ? O TYR A 353 AA1 7 8 N VAL A 355 ? N VAL A 354 O PHE A 402 ? O PHE A 401 AA1 8 9 O TYR A 401 ? O TYR A 400 N GLY A 18 ? N GLY A 17 AA2 1 2 N TRP A 231 ? N TRP A 230 O THR A 303 ? O THR A 302 AA2 2 3 N LYS A 306 ? N LYS A 305 O ASP A 317 ? O ASP A 316 AA3 1 2 N PHE A 424 ? N PHE A 423 O ILE A 433 ? O ILE A 432 # _atom_sites.entry_id 7WDN _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.004939 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.004939 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004939 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 VAL 2 1 ? ? ? A . n A 1 3 SER 3 2 ? ? ? A . n A 1 4 THR 4 3 ? ? ? A . n A 1 5 GLN 5 4 ? ? ? A . n A 1 6 ASN 6 5 ? ? ? A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 HIS 9 8 8 HIS HIS A . n A 1 10 ARG 10 9 9 ARG ARG A . n A 1 11 PHE 11 10 10 PHE PHE A . n A 1 12 PRO 12 11 11 PRO PRO A . n A 1 13 PRO 13 12 12 PRO PRO A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 PHE 15 14 14 PHE PHE A . n A 1 16 GLN 16 15 15 GLN GLN A . n A 1 17 TRP 17 16 16 TRP TRP A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 SER 22 21 21 SER SER A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 TYR 24 23 23 TYR TYR A . n A 1 25 GLN 25 24 24 GLN GLN A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 GLU 27 26 26 GLU GLU A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 ALA 29 28 28 ALA ALA A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 ASP 33 32 32 ASP ASP A . n A 1 34 GLY 34 33 33 GLY GLY A . n A 1 35 ARG 35 34 34 ARG ARG A . n A 1 36 SER 36 35 35 SER SER A . n A 1 37 PRO 37 36 36 PRO PRO A . n A 1 38 SER 38 37 37 SER SER A . n A 1 39 ILE 39 38 38 ILE ILE A . n A 1 40 TRP 40 39 39 TRP TRP A . n A 1 41 ASP 41 40 40 ASP ASP A . n A 1 42 THR 42 41 41 THR THR A . n A 1 43 PHE 43 42 42 PHE PHE A . n A 1 44 CYS 44 43 43 CYS CYS A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 ARG 46 45 45 ARG ARG A . n A 1 47 PRO 47 46 46 PRO PRO A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 ALA 49 48 48 ALA ALA A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 ASP 52 51 51 ASP ASP A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 SER 54 53 53 SER SER A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 ALA 57 56 56 ALA ALA A . n A 1 58 ILE 58 57 57 ILE ILE A . n A 1 59 ALA 59 58 58 ALA ALA A . n A 1 60 ASN 60 59 59 ASN ASN A . n A 1 61 ASP 61 60 60 ASP ASP A . n A 1 62 HIS 62 61 61 HIS HIS A . n A 1 63 TYR 63 62 62 TYR TYR A . n A 1 64 HIS 64 63 63 HIS HIS A . n A 1 65 ARG 65 64 64 ARG ARG A . n A 1 66 TYR 66 65 65 TYR TYR A . n A 1 67 ARG 67 66 66 ARG ARG A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 ASP 69 68 68 ASP ASP A . n A 1 70 ILE 70 69 69 ILE ILE A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 ILE 72 71 71 ILE ILE A . n A 1 73 MET 73 72 72 MET MET A . n A 1 74 LYS 74 73 73 LYS LYS A . n A 1 75 GLN 75 74 74 GLN GLN A . n A 1 76 LEU 76 75 75 LEU LEU A . n A 1 77 GLY 77 76 76 GLY GLY A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 ASN 79 78 78 ASN ASN A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 TYR 81 80 80 TYR TYR A . n A 1 82 ARG 82 81 81 ARG ARG A . n A 1 83 PHE 83 82 82 PHE PHE A . n A 1 84 SER 84 83 83 SER SER A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 ALA 86 85 85 ALA ALA A . n A 1 87 TRP 87 86 86 TRP TRP A . n A 1 88 PRO 88 87 87 PRO PRO A . n A 1 89 ARG 89 88 88 ARG ARG A . n A 1 90 ILE 90 89 89 ILE ILE A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 PRO 92 91 91 PRO PRO A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 GLY 94 93 93 GLY GLY A . n A 1 95 ARG 95 94 94 ARG ARG A . n A 1 96 GLY 96 95 95 GLY GLY A . n A 1 97 ARG 97 96 96 ARG ARG A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 GLN 100 99 99 GLN GLN A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 VAL 103 102 102 VAL VAL A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 PHE 105 104 104 PHE PHE A . n A 1 106 TYR 106 105 105 TYR TYR A . n A 1 107 GLU 107 106 106 GLU GLU A . n A 1 108 ARG 108 107 107 ARG ARG A . n A 1 109 LEU 109 108 108 LEU LEU A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 ASP 111 110 110 ASP ASP A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 GLU 115 114 114 GLU GLU A . n A 1 116 GLN 116 115 115 GLN GLN A . n A 1 117 GLY 117 116 116 GLY GLY A . n A 1 118 ILE 118 117 117 ILE ILE A . n A 1 119 GLU 119 118 118 GLU GLU A . n A 1 120 PRO 120 119 119 PRO PRO A . n A 1 121 TYR 121 120 120 TYR TYR A . n A 1 122 ALA 122 121 121 ALA ALA A . n A 1 123 THR 123 122 122 THR THR A . n A 1 124 LEU 124 123 123 LEU LEU A . n A 1 125 TYR 125 124 124 TYR TYR A . n A 1 126 HIS 126 125 125 HIS HIS A . n A 1 127 TRP 127 126 126 TRP TRP A . n A 1 128 ASP 128 127 127 ASP ASP A . n A 1 129 MET 129 128 128 MET MET A . n A 1 130 PRO 130 129 129 PRO PRO A . n A 1 131 GLN 131 130 130 GLN GLN A . n A 1 132 VAL 132 131 131 VAL VAL A . n A 1 133 GLN 133 132 132 GLN GLN A . n A 1 134 HIS 134 133 133 HIS HIS A . n A 1 135 ASP 135 134 134 ASP ASP A . n A 1 136 ARG 136 135 135 ARG ARG A . n A 1 137 THR 137 136 136 THR THR A . n A 1 138 PRO 138 137 137 PRO PRO A . n A 1 139 TRP 139 138 138 TRP TRP A . n A 1 140 TYR 140 139 139 TYR TYR A . n A 1 141 ASP 141 140 140 ASP ASP A . n A 1 142 ARG 142 141 141 ARG ARG A . n A 1 143 GLY 143 142 142 GLY GLY A . n A 1 144 VAL 144 143 143 VAL VAL A . n A 1 145 VAL 145 144 144 VAL VAL A . n A 1 146 ASP 146 145 145 ASP ASP A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 PHE 148 147 147 PHE PHE A . n A 1 149 VAL 149 148 148 VAL VAL A . n A 1 150 GLU 150 149 149 GLU GLU A . n A 1 151 TYR 151 150 150 TYR TYR A . n A 1 152 THR 152 151 151 THR THR A . n A 1 153 ASP 153 152 152 ASP ASP A . n A 1 154 VAL 154 153 153 VAL VAL A . n A 1 155 ILE 155 154 154 ILE ILE A . n A 1 156 THR 156 155 155 THR THR A . n A 1 157 ARG 157 156 156 ARG ARG A . n A 1 158 ARG 158 157 157 ARG ARG A . n A 1 159 LEU 159 158 158 LEU LEU A . n A 1 160 SER 160 159 159 SER SER A . n A 1 161 ASP 161 160 160 ASP ASP A . n A 1 162 ARG 162 161 161 ARG ARG A . n A 1 163 VAL 163 162 162 VAL VAL A . n A 1 164 LYS 164 163 163 LYS LYS A . n A 1 165 TYR 165 164 164 TYR TYR A . n A 1 166 TRP 166 165 165 TRP TRP A . n A 1 167 MET 167 166 166 MET MET A . n A 1 168 THR 168 167 167 THR THR A . n A 1 169 LEU 169 168 168 LEU LEU A . n A 1 170 ASN 170 169 169 ASN ASN A . n A 1 171 GLU 171 170 170 GLU GLU A . n A 1 172 PRO 172 171 171 PRO PRO A . n A 1 173 TRP 173 172 172 TRP TRP A . n A 1 174 VAL 174 173 173 VAL VAL A . n A 1 175 ILE 175 174 174 ILE ILE A . n A 1 176 SER 176 175 175 SER SER A . n A 1 177 PHE 177 176 176 PHE PHE A . n A 1 178 LEU 178 177 177 LEU LEU A . n A 1 179 GLY 179 178 178 GLY GLY A . n A 1 180 TYR 180 179 179 TYR TYR A . n A 1 181 GLY 181 180 180 GLY GLY A . n A 1 182 ALA 182 181 181 ALA ALA A . n A 1 183 GLY 183 182 182 GLY GLY A . n A 1 184 GLU 184 183 183 GLU GLU A . n A 1 185 HIS 185 184 184 HIS HIS A . n A 1 186 ALA 186 185 185 ALA ALA A . n A 1 187 PRO 187 186 186 PRO PRO A . n A 1 188 GLY 188 187 187 GLY GLY A . n A 1 189 LEU 189 188 188 LEU LEU A . n A 1 190 ARG 190 189 189 ARG ARG A . n A 1 191 ASP 191 190 190 ASP ASP A . n A 1 192 LYS 192 191 191 LYS LYS A . n A 1 193 GLU 193 192 192 GLU GLU A . n A 1 194 LEU 194 193 193 LEU LEU A . n A 1 195 TYR 195 194 194 TYR TYR A . n A 1 196 LEU 196 195 195 LEU LEU A . n A 1 197 ARG 197 196 196 ARG ARG A . n A 1 198 ALA 198 197 197 ALA ALA A . n A 1 199 ALA 199 198 198 ALA ALA A . n A 1 200 HIS 200 199 199 HIS HIS A . n A 1 201 HIS 201 200 200 HIS HIS A . n A 1 202 VAL 202 201 201 VAL VAL A . n A 1 203 LEU 203 202 202 LEU LEU A . n A 1 204 LEU 204 203 203 LEU LEU A . n A 1 205 ALA 205 204 204 ALA ALA A . n A 1 206 HIS 206 205 205 HIS HIS A . n A 1 207 GLY 207 206 206 GLY GLY A . n A 1 208 LYS 208 207 207 LYS LYS A . n A 1 209 ALA 209 208 208 ALA ALA A . n A 1 210 MET 210 209 209 MET MET A . n A 1 211 PRO 211 210 210 PRO PRO A . n A 1 212 VAL 212 211 211 VAL VAL A . n A 1 213 ILE 213 212 212 ILE ILE A . n A 1 214 ARG 214 213 213 ARG ARG A . n A 1 215 ALA 215 214 214 ALA ALA A . n A 1 216 ASN 216 215 215 ASN ASN A . n A 1 217 GLY 217 216 216 GLY GLY A . n A 1 218 ASN 218 217 217 ASN ASN A . n A 1 219 ALA 219 218 218 ALA ALA A . n A 1 220 GLN 220 219 219 GLN GLN A . n A 1 221 THR 221 220 220 THR THR A . n A 1 222 LYS 222 221 221 LYS LYS A . n A 1 223 ALA 223 222 222 ALA ALA A . n A 1 224 GLY 224 223 223 GLY GLY A . n A 1 225 ILE 225 224 224 ILE ILE A . n A 1 226 VAL 226 225 225 VAL VAL A . n A 1 227 LEU 227 226 226 LEU LEU A . n A 1 228 ASN 228 227 227 ASN ASN A . n A 1 229 LEU 229 228 228 LEU LEU A . n A 1 230 ASN 230 229 229 ASN ASN A . n A 1 231 TRP 231 230 230 TRP TRP A . n A 1 232 VAL 232 231 231 VAL VAL A . n A 1 233 ASN 233 232 232 ASN ASN A . n A 1 234 ALA 234 233 233 ALA ALA A . n A 1 235 ALA 235 234 234 ALA ALA A . n A 1 236 SER 236 235 235 SER SER A . n A 1 237 ASP 237 236 236 ASP ASP A . n A 1 238 SER 238 237 237 SER SER A . n A 1 239 PRO 239 238 238 PRO PRO A . n A 1 240 GLU 240 239 239 GLU GLU A . n A 1 241 ASP 241 240 240 ASP ASP A . n A 1 242 GLN 242 241 241 GLN GLN A . n A 1 243 ALA 243 242 242 ALA ALA A . n A 1 244 ALA 244 243 243 ALA ALA A . n A 1 245 ALA 245 244 244 ALA ALA A . n A 1 246 ARG 246 245 245 ARG ARG A . n A 1 247 ARG 247 246 246 ARG ARG A . n A 1 248 TYR 248 247 247 TYR TYR A . n A 1 249 ASP 249 248 248 ASP ASP A . n A 1 250 GLN 250 249 249 GLN GLN A . n A 1 251 PHE 251 250 250 PHE PHE A . n A 1 252 PHE 252 251 251 PHE PHE A . n A 1 253 ASN 253 252 252 ASN ASN A . n A 1 254 ARG 254 253 253 ARG ARG A . n A 1 255 TRP 255 254 254 TRP TRP A . n A 1 256 PHE 256 255 255 PHE PHE A . n A 1 257 ALA 257 256 256 ALA ALA A . n A 1 258 GLU 258 257 257 GLU GLU A . n A 1 259 PRO 259 258 258 PRO PRO A . n A 1 260 LEU 260 259 259 LEU LEU A . n A 1 261 TYR 261 260 260 TYR TYR A . n A 1 262 ASN 262 261 261 ASN ASN A . n A 1 263 GLY 263 262 262 GLY GLY A . n A 1 264 ARG 264 263 263 ARG ARG A . n A 1 265 TYR 265 264 264 TYR TYR A . n A 1 266 PRO 266 265 265 PRO PRO A . n A 1 267 GLU 267 266 266 GLU GLU A . n A 1 268 GLU 268 267 267 GLU GLU A . n A 1 269 LEU 269 268 268 LEU LEU A . n A 1 270 LEU 270 269 269 LEU LEU A . n A 1 271 GLU 271 270 270 GLU GLU A . n A 1 272 TRP 272 271 271 TRP TRP A . n A 1 273 TYR 273 272 272 TYR TYR A . n A 1 274 GLY 274 273 273 GLY GLY A . n A 1 275 ARG 275 274 274 ARG ARG A . n A 1 276 ASP 276 275 275 ASP ASP A . n A 1 277 LEU 277 276 276 LEU LEU A . n A 1 278 VAL 278 277 277 VAL VAL A . n A 1 279 PRO 279 278 278 PRO PRO A . n A 1 280 VAL 280 279 279 VAL VAL A . n A 1 281 GLN 281 280 280 GLN GLN A . n A 1 282 PRO 282 281 281 PRO PRO A . n A 1 283 GLY 283 282 282 GLY GLY A . n A 1 284 ASP 284 283 283 ASP ASP A . n A 1 285 PHE 285 284 284 PHE PHE A . n A 1 286 ASP 286 285 285 ASP ASP A . n A 1 287 ILE 287 286 286 ILE ILE A . n A 1 288 ILE 288 287 287 ILE ILE A . n A 1 289 THR 289 288 288 THR THR A . n A 1 290 THR 290 289 289 THR THR A . n A 1 291 PRO 291 290 290 PRO PRO A . n A 1 292 THR 292 291 291 THR THR A . n A 1 293 ASP 293 292 292 ASP ASP A . n A 1 294 PHE 294 293 293 PHE PHE A . n A 1 295 LEU 295 294 294 LEU LEU A . n A 1 296 ALA 296 295 295 ALA ALA A . n A 1 297 VAL 297 296 296 VAL VAL A . n A 1 298 ASN 298 297 297 ASN ASN A . n A 1 299 TYR 299 298 298 TYR TYR A . n A 1 300 TYR 300 299 299 TYR TYR A . n A 1 301 ALA 301 300 300 ALA ALA A . n A 1 302 ARG 302 301 301 ARG ARG A . n A 1 303 THR 303 302 302 THR THR A . n A 1 304 THR 304 303 303 THR THR A . n A 1 305 VAL 305 304 304 VAL VAL A . n A 1 306 LYS 306 305 305 LYS LYS A . n A 1 307 ALA 307 306 306 ALA ALA A . n A 1 308 GLY 308 307 307 GLY GLY A . n A 1 309 SER 309 308 308 SER SER A . n A 1 310 THR 310 309 309 THR THR A . n A 1 311 ASP 311 310 310 ASP ASP A . n A 1 312 PRO 312 311 311 PRO PRO A . n A 1 313 MET 313 312 312 MET MET A . n A 1 314 LEU 314 313 313 LEU LEU A . n A 1 315 GLN 315 314 314 GLN GLN A . n A 1 316 VAL 316 315 315 VAL VAL A . n A 1 317 ASP 317 316 316 ASP ASP A . n A 1 318 PHE 318 317 317 PHE PHE A . n A 1 319 VAL 319 318 318 VAL VAL A . n A 1 320 ARG 320 319 319 ARG ARG A . n A 1 321 PRO 321 320 320 PRO PRO A . n A 1 322 PRO 322 321 321 PRO PRO A . n A 1 323 GLY 323 322 322 GLY GLY A . n A 1 324 GLU 324 323 323 GLU GLU A . n A 1 325 TYR 325 324 324 TYR TYR A . n A 1 326 THR 326 325 325 THR THR A . n A 1 327 ALA 327 326 326 ALA ALA A . n A 1 328 MET 328 327 327 MET MET A . n A 1 329 ASP 329 328 328 ASP ASP A . n A 1 330 TRP 330 329 329 TRP TRP A . n A 1 331 GLU 331 330 330 GLU GLU A . n A 1 332 VAL 332 331 331 VAL VAL A . n A 1 333 TYR 333 332 332 TYR TYR A . n A 1 334 PRO 334 333 333 PRO PRO A . n A 1 335 GLN 335 334 334 GLN GLN A . n A 1 336 GLY 336 335 335 GLY GLY A . n A 1 337 LEU 337 336 336 LEU LEU A . n A 1 338 TYR 338 337 337 TYR TYR A . n A 1 339 ASN 339 338 338 ASN ASN A . n A 1 340 ILE 340 339 339 ILE ILE A . n A 1 341 LEU 341 340 340 LEU LEU A . n A 1 342 ASN 342 341 341 ASN ASN A . n A 1 343 TRP 343 342 342 TRP TRP A . n A 1 344 LEU 344 343 343 LEU LEU A . n A 1 345 HIS 345 344 344 HIS HIS A . n A 1 346 THR 346 345 345 THR THR A . n A 1 347 ASP 347 346 346 ASP ASP A . n A 1 348 TYR 348 347 347 TYR TYR A . n A 1 349 ALA 349 348 348 ALA ALA A . n A 1 350 PRO 350 349 349 PRO PRO A . n A 1 351 PRO 351 350 350 PRO PRO A . n A 1 352 ALA 352 351 351 ALA ALA A . n A 1 353 LEU 353 352 352 LEU LEU A . n A 1 354 TYR 354 353 353 TYR TYR A . n A 1 355 VAL 355 354 354 VAL VAL A . n A 1 356 THR 356 355 355 THR THR A . n A 1 357 GLU 357 356 356 GLU GLU A . n A 1 358 ASN 358 357 357 ASN ASN A . n A 1 359 GLY 359 358 358 GLY GLY A . n A 1 360 ALA 360 359 359 ALA ALA A . n A 1 361 ALA 361 360 360 ALA ALA A . n A 1 362 TYR 362 361 361 TYR TYR A . n A 1 363 ASP 363 362 362 ASP ASP A . n A 1 364 ASP 364 363 363 ASP ASP A . n A 1 365 GLN 365 364 364 GLN GLN A . n A 1 366 VAL 366 365 365 VAL VAL A . n A 1 367 SER 367 366 366 SER SER A . n A 1 368 ALA 368 367 367 ALA ALA A . n A 1 369 ALA 369 368 368 ALA ALA A . n A 1 370 GLY 370 369 369 GLY GLY A . n A 1 371 GLU 371 370 370 GLU GLU A . n A 1 372 VAL 372 371 371 VAL VAL A . n A 1 373 ASP 373 372 372 ASP ASP A . n A 1 374 ASP 374 373 373 ASP ASP A . n A 1 375 PRO 375 374 374 PRO PRO A . n A 1 376 GLN 376 375 375 GLN GLN A . n A 1 377 ARG 377 376 376 ARG ARG A . n A 1 378 LEU 378 377 377 LEU LEU A . n A 1 379 ALA 379 378 378 ALA ALA A . n A 1 380 TYR 380 379 379 TYR TYR A . n A 1 381 LEU 381 380 380 LEU LEU A . n A 1 382 GLU 382 381 381 GLU GLU A . n A 1 383 GLY 383 382 382 GLY GLY A . n A 1 384 HIS 384 383 383 HIS HIS A . n A 1 385 PHE 385 384 384 PHE PHE A . n A 1 386 GLU 386 385 385 GLU GLU A . n A 1 387 ALA 387 386 386 ALA ALA A . n A 1 388 ALA 388 387 387 ALA ALA A . n A 1 389 TYR 389 388 388 TYR TYR A . n A 1 390 ARG 390 389 389 ARG ARG A . n A 1 391 ALA 391 390 390 ALA ALA A . n A 1 392 ILE 392 391 391 ILE ILE A . n A 1 393 GLN 393 392 392 GLN GLN A . n A 1 394 ALA 394 393 393 ALA ALA A . n A 1 395 GLY 395 394 394 GLY GLY A . n A 1 396 ILE 396 395 395 ILE ILE A . n A 1 397 PRO 397 396 396 PRO PRO A . n A 1 398 LEU 398 397 397 LEU LEU A . n A 1 399 LYS 399 398 398 LYS LYS A . n A 1 400 GLY 400 399 399 GLY GLY A . n A 1 401 TYR 401 400 400 TYR TYR A . n A 1 402 PHE 402 401 401 PHE PHE A . n A 1 403 VAL 403 402 402 VAL VAL A . n A 1 404 TRP 404 403 403 TRP TRP A . n A 1 405 SER 405 404 404 SER SER A . n A 1 406 LEU 406 405 405 LEU LEU A . n A 1 407 MET 407 406 406 MET MET A . n A 1 408 ASP 408 407 407 ASP ASP A . n A 1 409 ASN 409 408 408 ASN ASN A . n A 1 410 PHE 410 409 409 PHE PHE A . n A 1 411 GLU 411 410 410 GLU GLU A . n A 1 412 TRP 412 411 411 TRP TRP A . n A 1 413 GLY 413 412 412 GLY GLY A . n A 1 414 ARG 414 413 413 ARG ARG A . n A 1 415 GLY 415 414 414 GLY GLY A . n A 1 416 PHE 416 415 415 PHE PHE A . n A 1 417 GLU 417 416 416 GLU GLU A . n A 1 418 LYS 418 417 417 LYS LYS A . n A 1 419 ARG 419 418 418 ARG ARG A . n A 1 420 PHE 420 419 419 PHE PHE A . n A 1 421 GLY 421 420 420 GLY GLY A . n A 1 422 ILE 422 421 421 ILE ILE A . n A 1 423 VAL 423 422 422 VAL VAL A . n A 1 424 PHE 424 423 423 PHE PHE A . n A 1 425 VAL 425 424 424 VAL VAL A . n A 1 426 ASP 426 425 425 ASP ASP A . n A 1 427 TYR 427 426 426 TYR TYR A . n A 1 428 ALA 428 427 427 ALA ALA A . n A 1 429 THR 429 428 428 THR THR A . n A 1 430 GLN 430 429 429 GLN GLN A . n A 1 431 GLN 431 430 430 GLN GLN A . n A 1 432 ARG 432 431 431 ARG ARG A . n A 1 433 ILE 433 432 432 ILE ILE A . n A 1 434 ILE 434 433 433 ILE ILE A . n A 1 435 LYS 435 434 434 LYS LYS A . n A 1 436 ARG 436 435 435 ARG ARG A . n A 1 437 SER 437 436 436 SER SER A . n A 1 438 GLY 438 437 437 GLY GLY A . n A 1 439 LYS 439 438 438 LYS LYS A . n A 1 440 TRP 440 439 439 TRP TRP A . n A 1 441 PHE 441 440 440 PHE PHE A . n A 1 442 SER 442 441 441 SER SER A . n A 1 443 GLN 443 442 442 GLN GLN A . n A 1 444 VAL 444 443 443 VAL VAL A . n A 1 445 THR 445 444 444 THR THR A . n A 1 446 ARG 446 445 445 ARG ARG A . n A 1 447 ALA 447 446 446 ALA ALA A . n A 1 448 ASN 448 447 447 ASN ASN A . n A 1 449 GLY 449 448 448 GLY GLY A . n A 1 450 LEU 450 449 449 LEU LEU A . n A 1 451 PRO 451 450 ? ? ? A . n A 1 452 ALA 452 451 ? ? ? A . n A 1 453 PRO 453 452 ? ? ? A . n A 1 454 GLN 454 453 ? ? ? A . n A 1 455 THR 455 454 ? ? ? A . n A 1 456 THR 456 455 ? ? ? A . n A 1 457 LEU 457 456 ? ? ? A . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 masa-watanabe@aist.go.jp Masahiro Watanabe ? 'principal investigator/group leader' 0000-0001-5211-1333 4 matsuzawa.tomohiko@kagawa-u.ac.jp Tomohiko Matsuzawa ? 'principal investigator/group leader' 0000-0001-9315-5383 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC 1 501 501 GLC GLC A . C 2 GLC 1 502 502 GLC GLC A . D 2 GLC 1 503 503 GLC GLC A . E 2 GLC 1 504 504 GLC GLC A . F 3 HOH 1 601 167 HOH HOH A . F 3 HOH 2 602 188 HOH HOH A . F 3 HOH 3 603 153 HOH HOH A . F 3 HOH 4 604 132 HOH HOH A . F 3 HOH 5 605 174 HOH HOH A . F 3 HOH 6 606 149 HOH HOH A . F 3 HOH 7 607 16 HOH HOH A . F 3 HOH 8 608 185 HOH HOH A . F 3 HOH 9 609 46 HOH HOH A . F 3 HOH 10 610 34 HOH HOH A . F 3 HOH 11 611 140 HOH HOH A . F 3 HOH 12 612 156 HOH HOH A . F 3 HOH 13 613 50 HOH HOH A . F 3 HOH 14 614 184 HOH HOH A . F 3 HOH 15 615 113 HOH HOH A . F 3 HOH 16 616 17 HOH HOH A . F 3 HOH 17 617 54 HOH HOH A . F 3 HOH 18 618 25 HOH HOH A . F 3 HOH 19 619 27 HOH HOH A . F 3 HOH 20 620 203 HOH HOH A . F 3 HOH 21 621 109 HOH HOH A . F 3 HOH 22 622 135 HOH HOH A . F 3 HOH 23 623 217 HOH HOH A . F 3 HOH 24 624 37 HOH HOH A . F 3 HOH 25 625 94 HOH HOH A . F 3 HOH 26 626 59 HOH HOH A . F 3 HOH 27 627 82 HOH HOH A . F 3 HOH 28 628 152 HOH HOH A . F 3 HOH 29 629 53 HOH HOH A . F 3 HOH 30 630 38 HOH HOH A . F 3 HOH 31 631 197 HOH HOH A . F 3 HOH 32 632 60 HOH HOH A . F 3 HOH 33 633 83 HOH HOH A . F 3 HOH 34 634 151 HOH HOH A . F 3 HOH 35 635 199 HOH HOH A . F 3 HOH 36 636 127 HOH HOH A . F 3 HOH 37 637 18 HOH HOH A . F 3 HOH 38 638 1 HOH HOH A . F 3 HOH 39 639 139 HOH HOH A . F 3 HOH 40 640 6 HOH HOH A . F 3 HOH 41 641 77 HOH HOH A . F 3 HOH 42 642 22 HOH HOH A . F 3 HOH 43 643 211 HOH HOH A . F 3 HOH 44 644 202 HOH HOH A . F 3 HOH 45 645 73 HOH HOH A . F 3 HOH 46 646 9 HOH HOH A . F 3 HOH 47 647 180 HOH HOH A . F 3 HOH 48 648 118 HOH HOH A . F 3 HOH 49 649 136 HOH HOH A . F 3 HOH 50 650 43 HOH HOH A . F 3 HOH 51 651 75 HOH HOH A . F 3 HOH 52 652 194 HOH HOH A . F 3 HOH 53 653 117 HOH HOH A . F 3 HOH 54 654 176 HOH HOH A . F 3 HOH 55 655 128 HOH HOH A . F 3 HOH 56 656 24 HOH HOH A . F 3 HOH 57 657 186 HOH HOH A . F 3 HOH 58 658 74 HOH HOH A . F 3 HOH 59 659 84 HOH HOH A . F 3 HOH 60 660 134 HOH HOH A . F 3 HOH 61 661 20 HOH HOH A . F 3 HOH 62 662 42 HOH HOH A . F 3 HOH 63 663 72 HOH HOH A . F 3 HOH 64 664 81 HOH HOH A . F 3 HOH 65 665 198 HOH HOH A . F 3 HOH 66 666 4 HOH HOH A . F 3 HOH 67 667 103 HOH HOH A . F 3 HOH 68 668 205 HOH HOH A . F 3 HOH 69 669 14 HOH HOH A . F 3 HOH 70 670 193 HOH HOH A . F 3 HOH 71 671 206 HOH HOH A . F 3 HOH 72 672 108 HOH HOH A . F 3 HOH 73 673 88 HOH HOH A . F 3 HOH 74 674 213 HOH HOH A . F 3 HOH 75 675 11 HOH HOH A . F 3 HOH 76 676 52 HOH HOH A . F 3 HOH 77 677 15 HOH HOH A . F 3 HOH 78 678 142 HOH HOH A . F 3 HOH 79 679 207 HOH HOH A . F 3 HOH 80 680 87 HOH HOH A . F 3 HOH 81 681 124 HOH HOH A . F 3 HOH 82 682 12 HOH HOH A . F 3 HOH 83 683 170 HOH HOH A . F 3 HOH 84 684 48 HOH HOH A . F 3 HOH 85 685 30 HOH HOH A . F 3 HOH 86 686 93 HOH HOH A . F 3 HOH 87 687 31 HOH HOH A . F 3 HOH 88 688 181 HOH HOH A . F 3 HOH 89 689 7 HOH HOH A . F 3 HOH 90 690 70 HOH HOH A . F 3 HOH 91 691 115 HOH HOH A . F 3 HOH 92 692 159 HOH HOH A . F 3 HOH 93 693 150 HOH HOH A . F 3 HOH 94 694 58 HOH HOH A . F 3 HOH 95 695 143 HOH HOH A . F 3 HOH 96 696 178 HOH HOH A . F 3 HOH 97 697 65 HOH HOH A . F 3 HOH 98 698 33 HOH HOH A . F 3 HOH 99 699 51 HOH HOH A . F 3 HOH 100 700 209 HOH HOH A . F 3 HOH 101 701 215 HOH HOH A . F 3 HOH 102 702 112 HOH HOH A . F 3 HOH 103 703 97 HOH HOH A . F 3 HOH 104 704 201 HOH HOH A . F 3 HOH 105 705 23 HOH HOH A . F 3 HOH 106 706 63 HOH HOH A . F 3 HOH 107 707 133 HOH HOH A . F 3 HOH 108 708 69 HOH HOH A . F 3 HOH 109 709 106 HOH HOH A . F 3 HOH 110 710 171 HOH HOH A . F 3 HOH 111 711 91 HOH HOH A . F 3 HOH 112 712 98 HOH HOH A . F 3 HOH 113 713 187 HOH HOH A . F 3 HOH 114 714 148 HOH HOH A . F 3 HOH 115 715 26 HOH HOH A . F 3 HOH 116 716 96 HOH HOH A . F 3 HOH 117 717 105 HOH HOH A . F 3 HOH 118 718 36 HOH HOH A . F 3 HOH 119 719 164 HOH HOH A . F 3 HOH 120 720 173 HOH HOH A . F 3 HOH 121 721 129 HOH HOH A . F 3 HOH 122 722 71 HOH HOH A . F 3 HOH 123 723 10 HOH HOH A . F 3 HOH 124 724 2 HOH HOH A . F 3 HOH 125 725 175 HOH HOH A . F 3 HOH 126 726 154 HOH HOH A . F 3 HOH 127 727 61 HOH HOH A . F 3 HOH 128 728 99 HOH HOH A . F 3 HOH 129 729 195 HOH HOH A . F 3 HOH 130 730 120 HOH HOH A . F 3 HOH 131 731 80 HOH HOH A . F 3 HOH 132 732 212 HOH HOH A . F 3 HOH 133 733 29 HOH HOH A . F 3 HOH 134 734 62 HOH HOH A . F 3 HOH 135 735 126 HOH HOH A . F 3 HOH 136 736 78 HOH HOH A . F 3 HOH 137 737 32 HOH HOH A . F 3 HOH 138 738 218 HOH HOH A . F 3 HOH 139 739 104 HOH HOH A . F 3 HOH 140 740 35 HOH HOH A . F 3 HOH 141 741 116 HOH HOH A . F 3 HOH 142 742 95 HOH HOH A . F 3 HOH 143 743 101 HOH HOH A . F 3 HOH 144 744 219 HOH HOH A . F 3 HOH 145 745 141 HOH HOH A . F 3 HOH 146 746 8 HOH HOH A . F 3 HOH 147 747 76 HOH HOH A . F 3 HOH 148 748 85 HOH HOH A . F 3 HOH 149 749 45 HOH HOH A . F 3 HOH 150 750 102 HOH HOH A . F 3 HOH 151 751 57 HOH HOH A . F 3 HOH 152 752 40 HOH HOH A . F 3 HOH 153 753 100 HOH HOH A . F 3 HOH 154 754 5 HOH HOH A . F 3 HOH 155 755 110 HOH HOH A . F 3 HOH 156 756 210 HOH HOH A . F 3 HOH 157 757 161 HOH HOH A . F 3 HOH 158 758 21 HOH HOH A . F 3 HOH 159 759 19 HOH HOH A . F 3 HOH 160 760 68 HOH HOH A . F 3 HOH 161 761 13 HOH HOH A . F 3 HOH 162 762 130 HOH HOH A . F 3 HOH 163 763 208 HOH HOH A . F 3 HOH 164 764 196 HOH HOH A . F 3 HOH 165 765 131 HOH HOH A . F 3 HOH 166 766 155 HOH HOH A . F 3 HOH 167 767 166 HOH HOH A . F 3 HOH 168 768 169 HOH HOH A . F 3 HOH 169 769 39 HOH HOH A . F 3 HOH 170 770 172 HOH HOH A . F 3 HOH 171 771 183 HOH HOH A . F 3 HOH 172 772 122 HOH HOH A . F 3 HOH 173 773 67 HOH HOH A . F 3 HOH 174 774 114 HOH HOH A . F 3 HOH 175 775 56 HOH HOH A . F 3 HOH 176 776 177 HOH HOH A . F 3 HOH 177 777 163 HOH HOH A . F 3 HOH 178 778 168 HOH HOH A . F 3 HOH 179 779 125 HOH HOH A . F 3 HOH 180 780 86 HOH HOH A . F 3 HOH 181 781 92 HOH HOH A . F 3 HOH 182 782 192 HOH HOH A . F 3 HOH 183 783 119 HOH HOH A . F 3 HOH 184 784 44 HOH HOH A . F 3 HOH 185 785 216 HOH HOH A . F 3 HOH 186 786 49 HOH HOH A . F 3 HOH 187 787 41 HOH HOH A . F 3 HOH 188 788 111 HOH HOH A . F 3 HOH 189 789 3 HOH HOH A . F 3 HOH 190 790 191 HOH HOH A . F 3 HOH 191 791 79 HOH HOH A . F 3 HOH 192 792 162 HOH HOH A . F 3 HOH 193 793 200 HOH HOH A . F 3 HOH 194 794 146 HOH HOH A . F 3 HOH 195 795 107 HOH HOH A . F 3 HOH 196 796 28 HOH HOH A . F 3 HOH 197 797 182 HOH HOH A . F 3 HOH 198 798 214 HOH HOH A . F 3 HOH 199 799 204 HOH HOH A . F 3 HOH 200 800 220 HOH HOH A . F 3 HOH 201 801 121 HOH HOH A . F 3 HOH 202 802 160 HOH HOH A . F 3 HOH 203 803 157 HOH HOH A . F 3 HOH 204 804 89 HOH HOH A . F 3 HOH 205 805 189 HOH HOH A . F 3 HOH 206 806 138 HOH HOH A . F 3 HOH 207 807 64 HOH HOH A . F 3 HOH 208 808 145 HOH HOH A . F 3 HOH 209 809 147 HOH HOH A . F 3 HOH 210 810 47 HOH HOH A . F 3 HOH 211 811 137 HOH HOH A . F 3 HOH 212 812 144 HOH HOH A . F 3 HOH 213 813 90 HOH HOH A . F 3 HOH 214 814 55 HOH HOH A . F 3 HOH 215 815 190 HOH HOH A . F 3 HOH 216 816 66 HOH HOH A . F 3 HOH 217 817 165 HOH HOH A . F 3 HOH 218 818 221 HOH HOH A . F 3 HOH 219 819 158 HOH HOH A . F 3 HOH 220 820 123 HOH HOH A . F 3 HOH 221 821 179 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 330 ? 1 MORE 2 ? 1 'SSA (A^2)' 15980 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-01-04 2 'Structure model' 1 1 2023-02-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_citation_author.identifier_ORCID' 14 2 'Structure model' '_citation_author.name' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0238 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7WDN _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 285 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 601 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 323 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 323 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 19_555 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 8 ? ? 168.58 -113.60 2 1 ALA A 58 ? ? 55.30 -129.11 3 1 TRP A 126 ? ? 92.65 3.34 4 1 ASP A 127 ? ? -109.50 55.56 5 1 THR A 167 ? ? -74.26 -74.82 6 1 GLU A 170 ? ? 56.11 73.59 7 1 TYR A 299 ? ? -130.33 -37.16 8 1 TYR A 332 ? ? -153.89 71.96 9 1 ASP A 373 ? ? -119.24 69.99 10 1 GLU A 410 ? ? -94.41 54.48 11 1 TRP A 411 ? ? 52.57 -129.70 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A VAL 1 ? A VAL 2 3 1 Y 1 A SER 2 ? A SER 3 4 1 Y 1 A THR 3 ? A THR 4 5 1 Y 1 A GLN 4 ? A GLN 5 6 1 Y 1 A ASN 5 ? A ASN 6 7 1 Y 1 A PRO 450 ? A PRO 451 8 1 Y 1 A ALA 451 ? A ALA 452 9 1 Y 1 A PRO 452 ? A PRO 453 10 1 Y 1 A GLN 453 ? A GLN 454 11 1 Y 1 A THR 454 ? A THR 455 12 1 Y 1 A THR 455 ? A THR 456 13 1 Y 1 A LEU 456 ? A LEU 457 # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GLC _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GLC _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 alpha-D-glucopyranose GLC 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5XGZ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #