data_7WDP # _entry.id 7WDP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7WDP pdb_00007wdp 10.2210/pdb7wdp/pdb WWPDB D_1300026523 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7WDP _pdbx_database_status.recvd_initial_deposition_date 2021-12-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Watanabe, M.' 1 ? 'Matsuzawa, T.' 2 ? 'Nakamichi, Y.' 3 ? 'Akita, H.' 4 ? 'Yaoi, K.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GW _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Appl.Microbiol.Biotechnol. _citation.journal_id_ASTM AMBIDG _citation.journal_id_CSD 0786 _citation.journal_id_ISSN 1432-0614 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 106 _citation.language ? _citation.page_first 4539 _citation.page_last 4551 _citation.title 'Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1007/s00253-022-12018-6 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Matsuzawa, T.' 1 ? primary 'Watanabe, M.' 2 ? primary 'Nakamichi, Y.' 3 ? primary 'Akita, H.' 4 ? primary 'Yaoi, K.' 5 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7WDP _cell.details ? _cell.formula_units_Z ? _cell.length_a 201.842 _cell.length_a_esd ? _cell.length_b 201.842 _cell.length_b_esd ? _cell.length_c 201.842 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 48 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Beta-glucosidase 52185.109 1 3.2.1.21 ? ? ? 2 branched man 'alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 3 non-polymer man alpha-D-glucopyranose 180.156 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 138 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVSTQNEPHRFPPDFQWGVATSSYQIEGAVEADGRSPSIWDTFCARPGAIADGSTGAIANDHYHRYREDIAIMKQLGVNA YRFSIAWPRILPDGRGRVNQAGVDFYERLVDSLLEQGIEPYATLYHWDMPQVQHDRTPWYDRGVVDAFVEYTDVITRRLS DRVKYWMTLNEPWVISFLGYGAGEHAPGLRDKELYLRAAHHVLLAHGKAMPVIRANGNAQTKAGIVLNLNWVNAASDSPE DQAAARRYDQFFNRWFAEPLYNGRYPEELLEWYGRDLVPVQPGDFDIITTPTDFLAVNYYARTTVKAGSTDPMLQVDFVR PPGEYTAMDWEVYPQGLYNILNWLHTDYAPPALYVTENGAAYDDQVSAAGEVDDPQRLAYLEGHFEAAYRAIQAGIPLKG YFVWSLMDNFEWGRGFEKRFGIVFVDYATQQRIIKRSGKWFSQVTRANGLPAPQTTLP ; _entity_poly.pdbx_seq_one_letter_code_can ;MVSTQNEPHRFPPDFQWGVATSSYQIEGAVEADGRSPSIWDTFCARPGAIADGSTGAIANDHYHRYREDIAIMKQLGVNA YRFSIAWPRILPDGRGRVNQAGVDFYERLVDSLLEQGIEPYATLYHWDMPQVQHDRTPWYDRGVVDAFVEYTDVITRRLS DRVKYWMTLNEPWVISFLGYGAGEHAPGLRDKELYLRAAHHVLLAHGKAMPVIRANGNAQTKAGIVLNLNWVNAASDSPE DQAAARRYDQFFNRWFAEPLYNGRYPEELLEWYGRDLVPVQPGDFDIITTPTDFLAVNYYARTTVKAGSTDPMLQVDFVR PPGEYTAMDWEVYPQGLYNILNWLHTDYAPPALYVTENGAAYDDQVSAAGEVDDPQRLAYLEGHFEAAYRAIQAGIPLKG YFVWSLMDNFEWGRGFEKRFGIVFVDYATQQRIIKRSGKWFSQVTRANGLPAPQTTLP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 SER n 1 4 THR n 1 5 GLN n 1 6 ASN n 1 7 GLU n 1 8 PRO n 1 9 HIS n 1 10 ARG n 1 11 PHE n 1 12 PRO n 1 13 PRO n 1 14 ASP n 1 15 PHE n 1 16 GLN n 1 17 TRP n 1 18 GLY n 1 19 VAL n 1 20 ALA n 1 21 THR n 1 22 SER n 1 23 SER n 1 24 TYR n 1 25 GLN n 1 26 ILE n 1 27 GLU n 1 28 GLY n 1 29 ALA n 1 30 VAL n 1 31 GLU n 1 32 ALA n 1 33 ASP n 1 34 GLY n 1 35 ARG n 1 36 SER n 1 37 PRO n 1 38 SER n 1 39 ILE n 1 40 TRP n 1 41 ASP n 1 42 THR n 1 43 PHE n 1 44 CYS n 1 45 ALA n 1 46 ARG n 1 47 PRO n 1 48 GLY n 1 49 ALA n 1 50 ILE n 1 51 ALA n 1 52 ASP n 1 53 GLY n 1 54 SER n 1 55 THR n 1 56 GLY n 1 57 ALA n 1 58 ILE n 1 59 ALA n 1 60 ASN n 1 61 ASP n 1 62 HIS n 1 63 TYR n 1 64 HIS n 1 65 ARG n 1 66 TYR n 1 67 ARG n 1 68 GLU n 1 69 ASP n 1 70 ILE n 1 71 ALA n 1 72 ILE n 1 73 MET n 1 74 LYS n 1 75 GLN n 1 76 LEU n 1 77 GLY n 1 78 VAL n 1 79 ASN n 1 80 ALA n 1 81 TYR n 1 82 ARG n 1 83 PHE n 1 84 SER n 1 85 ILE n 1 86 ALA n 1 87 TRP n 1 88 PRO n 1 89 ARG n 1 90 ILE n 1 91 LEU n 1 92 PRO n 1 93 ASP n 1 94 GLY n 1 95 ARG n 1 96 GLY n 1 97 ARG n 1 98 VAL n 1 99 ASN n 1 100 GLN n 1 101 ALA n 1 102 GLY n 1 103 VAL n 1 104 ASP n 1 105 PHE n 1 106 TYR n 1 107 GLU n 1 108 ARG n 1 109 LEU n 1 110 VAL n 1 111 ASP n 1 112 SER n 1 113 LEU n 1 114 LEU n 1 115 GLU n 1 116 GLN n 1 117 GLY n 1 118 ILE n 1 119 GLU n 1 120 PRO n 1 121 TYR n 1 122 ALA n 1 123 THR n 1 124 LEU n 1 125 TYR n 1 126 HIS n 1 127 TRP n 1 128 ASP n 1 129 MET n 1 130 PRO n 1 131 GLN n 1 132 VAL n 1 133 GLN n 1 134 HIS n 1 135 ASP n 1 136 ARG n 1 137 THR n 1 138 PRO n 1 139 TRP n 1 140 TYR n 1 141 ASP n 1 142 ARG n 1 143 GLY n 1 144 VAL n 1 145 VAL n 1 146 ASP n 1 147 ALA n 1 148 PHE n 1 149 VAL n 1 150 GLU n 1 151 TYR n 1 152 THR n 1 153 ASP n 1 154 VAL n 1 155 ILE n 1 156 THR n 1 157 ARG n 1 158 ARG n 1 159 LEU n 1 160 SER n 1 161 ASP n 1 162 ARG n 1 163 VAL n 1 164 LYS n 1 165 TYR n 1 166 TRP n 1 167 MET n 1 168 THR n 1 169 LEU n 1 170 ASN n 1 171 GLU n 1 172 PRO n 1 173 TRP n 1 174 VAL n 1 175 ILE n 1 176 SER n 1 177 PHE n 1 178 LEU n 1 179 GLY n 1 180 TYR n 1 181 GLY n 1 182 ALA n 1 183 GLY n 1 184 GLU n 1 185 HIS n 1 186 ALA n 1 187 PRO n 1 188 GLY n 1 189 LEU n 1 190 ARG n 1 191 ASP n 1 192 LYS n 1 193 GLU n 1 194 LEU n 1 195 TYR n 1 196 LEU n 1 197 ARG n 1 198 ALA n 1 199 ALA n 1 200 HIS n 1 201 HIS n 1 202 VAL n 1 203 LEU n 1 204 LEU n 1 205 ALA n 1 206 HIS n 1 207 GLY n 1 208 LYS n 1 209 ALA n 1 210 MET n 1 211 PRO n 1 212 VAL n 1 213 ILE n 1 214 ARG n 1 215 ALA n 1 216 ASN n 1 217 GLY n 1 218 ASN n 1 219 ALA n 1 220 GLN n 1 221 THR n 1 222 LYS n 1 223 ALA n 1 224 GLY n 1 225 ILE n 1 226 VAL n 1 227 LEU n 1 228 ASN n 1 229 LEU n 1 230 ASN n 1 231 TRP n 1 232 VAL n 1 233 ASN n 1 234 ALA n 1 235 ALA n 1 236 SER n 1 237 ASP n 1 238 SER n 1 239 PRO n 1 240 GLU n 1 241 ASP n 1 242 GLN n 1 243 ALA n 1 244 ALA n 1 245 ALA n 1 246 ARG n 1 247 ARG n 1 248 TYR n 1 249 ASP n 1 250 GLN n 1 251 PHE n 1 252 PHE n 1 253 ASN n 1 254 ARG n 1 255 TRP n 1 256 PHE n 1 257 ALA n 1 258 GLU n 1 259 PRO n 1 260 LEU n 1 261 TYR n 1 262 ASN n 1 263 GLY n 1 264 ARG n 1 265 TYR n 1 266 PRO n 1 267 GLU n 1 268 GLU n 1 269 LEU n 1 270 LEU n 1 271 GLU n 1 272 TRP n 1 273 TYR n 1 274 GLY n 1 275 ARG n 1 276 ASP n 1 277 LEU n 1 278 VAL n 1 279 PRO n 1 280 VAL n 1 281 GLN n 1 282 PRO n 1 283 GLY n 1 284 ASP n 1 285 PHE n 1 286 ASP n 1 287 ILE n 1 288 ILE n 1 289 THR n 1 290 THR n 1 291 PRO n 1 292 THR n 1 293 ASP n 1 294 PHE n 1 295 LEU n 1 296 ALA n 1 297 VAL n 1 298 ASN n 1 299 TYR n 1 300 TYR n 1 301 ALA n 1 302 ARG n 1 303 THR n 1 304 THR n 1 305 VAL n 1 306 LYS n 1 307 ALA n 1 308 GLY n 1 309 SER n 1 310 THR n 1 311 ASP n 1 312 PRO n 1 313 MET n 1 314 LEU n 1 315 GLN n 1 316 VAL n 1 317 ASP n 1 318 PHE n 1 319 VAL n 1 320 ARG n 1 321 PRO n 1 322 PRO n 1 323 GLY n 1 324 GLU n 1 325 TYR n 1 326 THR n 1 327 ALA n 1 328 MET n 1 329 ASP n 1 330 TRP n 1 331 GLU n 1 332 VAL n 1 333 TYR n 1 334 PRO n 1 335 GLN n 1 336 GLY n 1 337 LEU n 1 338 TYR n 1 339 ASN n 1 340 ILE n 1 341 LEU n 1 342 ASN n 1 343 TRP n 1 344 LEU n 1 345 HIS n 1 346 THR n 1 347 ASP n 1 348 TYR n 1 349 ALA n 1 350 PRO n 1 351 PRO n 1 352 ALA n 1 353 LEU n 1 354 TYR n 1 355 VAL n 1 356 THR n 1 357 GLU n 1 358 ASN n 1 359 GLY n 1 360 ALA n 1 361 ALA n 1 362 TYR n 1 363 ASP n 1 364 ASP n 1 365 GLN n 1 366 VAL n 1 367 SER n 1 368 ALA n 1 369 ALA n 1 370 GLY n 1 371 GLU n 1 372 VAL n 1 373 ASP n 1 374 ASP n 1 375 PRO n 1 376 GLN n 1 377 ARG n 1 378 LEU n 1 379 ALA n 1 380 TYR n 1 381 LEU n 1 382 GLU n 1 383 GLY n 1 384 HIS n 1 385 PHE n 1 386 GLU n 1 387 ALA n 1 388 ALA n 1 389 TYR n 1 390 ARG n 1 391 ALA n 1 392 ILE n 1 393 GLN n 1 394 ALA n 1 395 GLY n 1 396 ILE n 1 397 PRO n 1 398 LEU n 1 399 LYS n 1 400 GLY n 1 401 TYR n 1 402 PHE n 1 403 VAL n 1 404 TRP n 1 405 SER n 1 406 LEU n 1 407 MET n 1 408 ASP n 1 409 ASN n 1 410 PHE n 1 411 GLU n 1 412 TRP n 1 413 GLY n 1 414 ARG n 1 415 GLY n 1 416 PHE n 1 417 GLU n 1 418 LYS n 1 419 ARG n 1 420 PHE n 1 421 GLY n 1 422 ILE n 1 423 VAL n 1 424 PHE n 1 425 VAL n 1 426 ASP n 1 427 TYR n 1 428 ALA n 1 429 THR n 1 430 GLN n 1 431 GLN n 1 432 ARG n 1 433 ILE n 1 434 ILE n 1 435 LYS n 1 436 ARG n 1 437 SER n 1 438 GLY n 1 439 LYS n 1 440 TRP n 1 441 PHE n 1 442 SER n 1 443 GLN n 1 444 VAL n 1 445 THR n 1 446 ARG n 1 447 ALA n 1 448 ASN n 1 449 GLY n 1 450 LEU n 1 451 PRO n 1 452 ALA n 1 453 PRO n 1 454 GLN n 1 455 THR n 1 456 THR n 1 457 LEU n 1 458 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 458 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name metagenome _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 256318 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A1E1FFN6_9ZZZZ _struct_ref.pdbx_db_accession A0A1E1FFN6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;STQNEPHRFPPDFQWGVATSSYQIEGAVEADGRSPSIWDTFCARPGAIADGSTGAIANDHYHRYREDIAIMKQLGVNAYR FSIAWPRILPDGRGRVNQAGVDFYERLVDSLLEQGIEPYATLYHWDMPQVQHDRTPWYDRGVVDAFVEYTDVITRRLSDR VKYWMTLNEPWVISFLGYGAGEHAPGLRDKELYLRAAHHVLLAHGKAMPVIRANGNAQTKAGIVLNLNWVNAASDSPEDQ AAARRYDQFFNRWFAEPLYNGRYPEELLEWYGRDLVPVQPGDFDIITTPTDFLAVNYYARTTVKAGSTDPMLQVDFVRPP GEYTAMDWEVYPQGLYNILNWLHTDYAPPALYVTENGAAYDDQVSAAGEVDDPQRLAYLEGHFEAAYRAIQAGIPLKGYF VWSLMDNFEWGRGFEKRFGIVFVDYATQQRIIKRSGKWFSQVTRANGLPAPQTT ; _struct_ref.pdbx_align_begin 2 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7WDP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 456 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A1E1FFN6 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 455 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 455 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7WDP MET A 1 ? UNP A0A1E1FFN6 ? ? 'initiating methionine' 0 1 1 7WDP VAL A 2 ? UNP A0A1E1FFN6 ? ? 'expression tag' 1 2 1 7WDP LEU A 457 ? UNP A0A1E1FFN6 ? ? 'expression tag' 456 3 1 7WDP PRO A 458 ? UNP A0A1E1FFN6 ? ? 'expression tag' 457 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose 'alpha-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7WDP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.28 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Tris-HCl buffer (pH 8.5), 1.2 M lithium sulfate, 0.01 M nickel chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-04-21 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7WDP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.38 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 28007 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 25.7 _reflns.pdbx_Rmerge_I_obs 0.122 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 80.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.38 _reflns_shell.d_res_low 2.42 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1372 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.680 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.00 _refine.B_iso_max ? _refine.B_iso_mean 35.863 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7WDP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.39 _refine.ls_d_res_low 30.00 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 26641 _refine.ls_number_reflns_R_free 1353 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.81 _refine.ls_percent_reflns_R_free 4.8 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.15917 _refine.ls_R_factor_R_free 0.19768 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.15716 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5XGZ _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.219 _refine.pdbx_overall_ESU_R_Free 0.181 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 5.182 _refine.overall_SU_ML 0.122 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 2.39 _refine_hist.d_res_low 30.00 _refine_hist.number_atoms_solvent 138 _refine_hist.number_atoms_total 3781 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 3603 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.013 3759 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.017 3281 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.749 1.660 5136 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.364 1.584 7576 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.477 5.000 444 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 32.441 21.255 231 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 15.781 15.000 539 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 16.968 15.000 32 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.096 0.200 466 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 4288 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 900 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 3.084 3.702 1779 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 3.076 3.699 1778 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 4.652 5.539 2222 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 4.651 5.543 2223 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 3.616 3.973 1976 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.616 3.973 1972 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 5.352 5.835 2904 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 6.760 41.556 4320 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 6.757 41.540 4308 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.39 _refine_ls_shell.d_res_low 2.451 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_R_work 1913 _refine_ls_shell.percent_reflns_obs 99.90 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.229 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.185 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7WDP _struct.title 'Crystal structures of MeBglD2 in complex with various saccharides' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7WDP _struct_keywords.text 'glycoside hydrolase family 1, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 22 ? GLU A 27 ? SER A 21 GLU A 26 1 ? 6 HELX_P HELX_P2 AA2 GLU A 31 ? ARG A 35 ? GLU A 30 ARG A 34 5 ? 5 HELX_P HELX_P3 AA3 SER A 38 ? CYS A 44 ? SER A 37 CYS A 43 1 ? 7 HELX_P HELX_P4 AA4 ASP A 61 ? GLY A 77 ? ASP A 60 GLY A 76 1 ? 17 HELX_P HELX_P5 AA5 ALA A 86 ? LEU A 91 ? ALA A 85 LEU A 90 1 ? 6 HELX_P HELX_P6 AA6 ASN A 99 ? GLU A 115 ? ASN A 98 GLU A 114 1 ? 17 HELX_P HELX_P7 AA7 PRO A 130 ? THR A 137 ? PRO A 129 THR A 136 1 ? 8 HELX_P HELX_P8 AA8 GLY A 143 ? SER A 160 ? GLY A 142 SER A 159 1 ? 18 HELX_P HELX_P9 AA9 GLU A 171 ? GLY A 181 ? GLU A 170 GLY A 180 1 ? 11 HELX_P HELX_P10 AB1 ASP A 191 ? ASN A 216 ? ASP A 190 ASN A 215 1 ? 26 HELX_P HELX_P11 AB2 SER A 238 ? ASN A 253 ? SER A 237 ASN A 252 1 ? 16 HELX_P HELX_P12 AB3 ASN A 253 ? GLY A 263 ? ASN A 252 GLY A 262 1 ? 11 HELX_P HELX_P13 AB4 PRO A 266 ? GLY A 274 ? PRO A 265 GLY A 273 1 ? 9 HELX_P HELX_P14 AB5 ARG A 275 ? VAL A 278 ? ARG A 274 VAL A 277 5 ? 4 HELX_P HELX_P15 AB6 GLY A 283 ? THR A 289 ? GLY A 282 THR A 288 1 ? 7 HELX_P HELX_P16 AB7 PRO A 334 ? ALA A 349 ? PRO A 333 ALA A 348 1 ? 16 HELX_P HELX_P17 AB8 ASP A 374 ? ALA A 394 ? ASP A 373 ALA A 393 1 ? 21 HELX_P HELX_P18 AB9 GLU A 411 ? LYS A 418 ? GLU A 410 LYS A 417 5 ? 8 HELX_P HELX_P19 AC1 LYS A 435 ? ASN A 448 ? LYS A 434 ASN A 447 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id GLC _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_label_atom_id O4 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id GLC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C1 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLC _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GLC _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.412 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 186 A . ? ALA 185 A PRO 187 A ? PRO 186 A 1 2.31 2 TRP 404 A . ? TRP 403 A SER 405 A ? SER 404 A 1 7.56 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 9 ? AA2 ? 3 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? parallel AA1 7 8 ? parallel AA1 8 9 ? parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 16 ? ALA A 20 ? GLN A 15 ALA A 19 AA1 2 ALA A 80 ? SER A 84 ? ALA A 79 SER A 83 AA1 3 GLU A 119 ? TYR A 125 ? GLU A 118 TYR A 124 AA1 4 TYR A 165 ? ASN A 170 ? TYR A 164 ASN A 169 AA1 5 LYS A 222 ? ASN A 228 ? LYS A 221 ASN A 227 AA1 6 LEU A 295 ? ASN A 298 ? LEU A 294 ASN A 297 AA1 7 LEU A 353 ? ASN A 358 ? LEU A 352 ASN A 357 AA1 8 LEU A 398 ? TRP A 404 ? LEU A 397 TRP A 403 AA1 9 GLN A 16 ? ALA A 20 ? GLN A 15 ALA A 19 AA2 1 TRP A 231 ? ALA A 234 ? TRP A 230 ALA A 233 AA2 2 ARG A 302 ? ALA A 307 ? ARG A 301 ALA A 306 AA2 3 VAL A 316 ? VAL A 319 ? VAL A 315 VAL A 318 AA3 1 VAL A 423 ? VAL A 425 ? VAL A 422 VAL A 424 AA3 2 ARG A 432 ? ILE A 434 ? ARG A 431 ILE A 433 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 19 ? N VAL A 18 O ARG A 82 ? O ARG A 81 AA1 2 3 N PHE A 83 ? N PHE A 82 O THR A 123 ? O THR A 122 AA1 3 4 N LEU A 124 ? N LEU A 123 O MET A 167 ? O MET A 166 AA1 4 5 N TRP A 166 ? N TRP A 165 O LYS A 222 ? O LYS A 221 AA1 5 6 N LEU A 227 ? N LEU A 226 O ALA A 296 ? O ALA A 295 AA1 6 7 N VAL A 297 ? N VAL A 296 O TYR A 354 ? O TYR A 353 AA1 7 8 N LEU A 353 ? N LEU A 352 O LYS A 399 ? O LYS A 398 AA1 8 9 O TYR A 401 ? O TYR A 400 N GLY A 18 ? N GLY A 17 AA2 1 2 N ASN A 233 ? N ASN A 232 O VAL A 305 ? O VAL A 304 AA2 2 3 N LYS A 306 ? N LYS A 305 O ASP A 317 ? O ASP A 316 AA3 1 2 N PHE A 424 ? N PHE A 423 O ILE A 433 ? O ILE A 432 # _atom_sites.entry_id 7WDP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.004954 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.004954 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004954 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 VAL 2 1 ? ? ? A . n A 1 3 SER 3 2 ? ? ? A . n A 1 4 THR 4 3 ? ? ? A . n A 1 5 GLN 5 4 ? ? ? A . n A 1 6 ASN 6 5 ? ? ? A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 HIS 9 8 8 HIS HIS A . n A 1 10 ARG 10 9 9 ARG ARG A . n A 1 11 PHE 11 10 10 PHE PHE A . n A 1 12 PRO 12 11 11 PRO PRO A . n A 1 13 PRO 13 12 12 PRO PRO A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 PHE 15 14 14 PHE PHE A . n A 1 16 GLN 16 15 15 GLN GLN A . n A 1 17 TRP 17 16 16 TRP TRP A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 SER 22 21 21 SER SER A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 TYR 24 23 23 TYR TYR A . n A 1 25 GLN 25 24 24 GLN GLN A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 GLU 27 26 26 GLU GLU A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 ALA 29 28 28 ALA ALA A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 ASP 33 32 32 ASP ASP A . n A 1 34 GLY 34 33 33 GLY GLY A . n A 1 35 ARG 35 34 34 ARG ARG A . n A 1 36 SER 36 35 35 SER SER A . n A 1 37 PRO 37 36 36 PRO PRO A . n A 1 38 SER 38 37 37 SER SER A . n A 1 39 ILE 39 38 38 ILE ILE A . n A 1 40 TRP 40 39 39 TRP TRP A . n A 1 41 ASP 41 40 40 ASP ASP A . n A 1 42 THR 42 41 41 THR THR A . n A 1 43 PHE 43 42 42 PHE PHE A . n A 1 44 CYS 44 43 43 CYS CYS A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 ARG 46 45 45 ARG ARG A . n A 1 47 PRO 47 46 46 PRO PRO A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 ALA 49 48 48 ALA ALA A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 ASP 52 51 51 ASP ASP A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 SER 54 53 53 SER SER A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 ALA 57 56 56 ALA ALA A . n A 1 58 ILE 58 57 57 ILE ILE A . n A 1 59 ALA 59 58 58 ALA ALA A . n A 1 60 ASN 60 59 59 ASN ASN A . n A 1 61 ASP 61 60 60 ASP ASP A . n A 1 62 HIS 62 61 61 HIS HIS A . n A 1 63 TYR 63 62 62 TYR TYR A . n A 1 64 HIS 64 63 63 HIS HIS A . n A 1 65 ARG 65 64 64 ARG ARG A . n A 1 66 TYR 66 65 65 TYR TYR A . n A 1 67 ARG 67 66 66 ARG ARG A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 ASP 69 68 68 ASP ASP A . n A 1 70 ILE 70 69 69 ILE ILE A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 ILE 72 71 71 ILE ILE A . n A 1 73 MET 73 72 72 MET MET A . n A 1 74 LYS 74 73 73 LYS LYS A . n A 1 75 GLN 75 74 74 GLN GLN A . n A 1 76 LEU 76 75 75 LEU LEU A . n A 1 77 GLY 77 76 76 GLY GLY A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 ASN 79 78 78 ASN ASN A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 TYR 81 80 80 TYR TYR A . n A 1 82 ARG 82 81 81 ARG ARG A . n A 1 83 PHE 83 82 82 PHE PHE A . n A 1 84 SER 84 83 83 SER SER A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 ALA 86 85 85 ALA ALA A . n A 1 87 TRP 87 86 86 TRP TRP A . n A 1 88 PRO 88 87 87 PRO PRO A . n A 1 89 ARG 89 88 88 ARG ARG A . n A 1 90 ILE 90 89 89 ILE ILE A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 PRO 92 91 91 PRO PRO A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 GLY 94 93 93 GLY GLY A . n A 1 95 ARG 95 94 94 ARG ARG A . n A 1 96 GLY 96 95 95 GLY GLY A . n A 1 97 ARG 97 96 96 ARG ARG A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 GLN 100 99 99 GLN GLN A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 VAL 103 102 102 VAL VAL A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 PHE 105 104 104 PHE PHE A . n A 1 106 TYR 106 105 105 TYR TYR A . n A 1 107 GLU 107 106 106 GLU GLU A . n A 1 108 ARG 108 107 107 ARG ARG A . n A 1 109 LEU 109 108 108 LEU LEU A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 ASP 111 110 110 ASP ASP A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 GLU 115 114 114 GLU GLU A . n A 1 116 GLN 116 115 115 GLN GLN A . n A 1 117 GLY 117 116 116 GLY GLY A . n A 1 118 ILE 118 117 117 ILE ILE A . n A 1 119 GLU 119 118 118 GLU GLU A . n A 1 120 PRO 120 119 119 PRO PRO A . n A 1 121 TYR 121 120 120 TYR TYR A . n A 1 122 ALA 122 121 121 ALA ALA A . n A 1 123 THR 123 122 122 THR THR A . n A 1 124 LEU 124 123 123 LEU LEU A . n A 1 125 TYR 125 124 124 TYR TYR A . n A 1 126 HIS 126 125 125 HIS HIS A . n A 1 127 TRP 127 126 126 TRP TRP A . n A 1 128 ASP 128 127 127 ASP ASP A . n A 1 129 MET 129 128 128 MET MET A . n A 1 130 PRO 130 129 129 PRO PRO A . n A 1 131 GLN 131 130 130 GLN GLN A . n A 1 132 VAL 132 131 131 VAL VAL A . n A 1 133 GLN 133 132 132 GLN GLN A . n A 1 134 HIS 134 133 133 HIS HIS A . n A 1 135 ASP 135 134 134 ASP ASP A . n A 1 136 ARG 136 135 135 ARG ARG A . n A 1 137 THR 137 136 136 THR THR A . n A 1 138 PRO 138 137 137 PRO PRO A . n A 1 139 TRP 139 138 138 TRP TRP A . n A 1 140 TYR 140 139 139 TYR TYR A . n A 1 141 ASP 141 140 140 ASP ASP A . n A 1 142 ARG 142 141 141 ARG ARG A . n A 1 143 GLY 143 142 142 GLY GLY A . n A 1 144 VAL 144 143 143 VAL VAL A . n A 1 145 VAL 145 144 144 VAL VAL A . n A 1 146 ASP 146 145 145 ASP ASP A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 PHE 148 147 147 PHE PHE A . n A 1 149 VAL 149 148 148 VAL VAL A . n A 1 150 GLU 150 149 149 GLU GLU A . n A 1 151 TYR 151 150 150 TYR TYR A . n A 1 152 THR 152 151 151 THR THR A . n A 1 153 ASP 153 152 152 ASP ASP A . n A 1 154 VAL 154 153 153 VAL VAL A . n A 1 155 ILE 155 154 154 ILE ILE A . n A 1 156 THR 156 155 155 THR THR A . n A 1 157 ARG 157 156 156 ARG ARG A . n A 1 158 ARG 158 157 157 ARG ARG A . n A 1 159 LEU 159 158 158 LEU LEU A . n A 1 160 SER 160 159 159 SER SER A . n A 1 161 ASP 161 160 160 ASP ASP A . n A 1 162 ARG 162 161 161 ARG ARG A . n A 1 163 VAL 163 162 162 VAL VAL A . n A 1 164 LYS 164 163 163 LYS LYS A . n A 1 165 TYR 165 164 164 TYR TYR A . n A 1 166 TRP 166 165 165 TRP TRP A . n A 1 167 MET 167 166 166 MET MET A . n A 1 168 THR 168 167 167 THR THR A . n A 1 169 LEU 169 168 168 LEU LEU A . n A 1 170 ASN 170 169 169 ASN ASN A . n A 1 171 GLU 171 170 170 GLU GLU A . n A 1 172 PRO 172 171 171 PRO PRO A . n A 1 173 TRP 173 172 172 TRP TRP A . n A 1 174 VAL 174 173 173 VAL VAL A . n A 1 175 ILE 175 174 174 ILE ILE A . n A 1 176 SER 176 175 175 SER SER A . n A 1 177 PHE 177 176 176 PHE PHE A . n A 1 178 LEU 178 177 177 LEU LEU A . n A 1 179 GLY 179 178 178 GLY GLY A . n A 1 180 TYR 180 179 179 TYR TYR A . n A 1 181 GLY 181 180 180 GLY GLY A . n A 1 182 ALA 182 181 181 ALA ALA A . n A 1 183 GLY 183 182 182 GLY GLY A . n A 1 184 GLU 184 183 183 GLU GLU A . n A 1 185 HIS 185 184 184 HIS HIS A . n A 1 186 ALA 186 185 185 ALA ALA A . n A 1 187 PRO 187 186 186 PRO PRO A . n A 1 188 GLY 188 187 187 GLY GLY A . n A 1 189 LEU 189 188 188 LEU LEU A . n A 1 190 ARG 190 189 189 ARG ARG A . n A 1 191 ASP 191 190 190 ASP ASP A . n A 1 192 LYS 192 191 191 LYS LYS A . n A 1 193 GLU 193 192 192 GLU GLU A . n A 1 194 LEU 194 193 193 LEU LEU A . n A 1 195 TYR 195 194 194 TYR TYR A . n A 1 196 LEU 196 195 195 LEU LEU A . n A 1 197 ARG 197 196 196 ARG ARG A . n A 1 198 ALA 198 197 197 ALA ALA A . n A 1 199 ALA 199 198 198 ALA ALA A . n A 1 200 HIS 200 199 199 HIS HIS A . n A 1 201 HIS 201 200 200 HIS HIS A . n A 1 202 VAL 202 201 201 VAL VAL A . n A 1 203 LEU 203 202 202 LEU LEU A . n A 1 204 LEU 204 203 203 LEU LEU A . n A 1 205 ALA 205 204 204 ALA ALA A . n A 1 206 HIS 206 205 205 HIS HIS A . n A 1 207 GLY 207 206 206 GLY GLY A . n A 1 208 LYS 208 207 207 LYS LYS A . n A 1 209 ALA 209 208 208 ALA ALA A . n A 1 210 MET 210 209 209 MET MET A . n A 1 211 PRO 211 210 210 PRO PRO A . n A 1 212 VAL 212 211 211 VAL VAL A . n A 1 213 ILE 213 212 212 ILE ILE A . n A 1 214 ARG 214 213 213 ARG ARG A . n A 1 215 ALA 215 214 214 ALA ALA A . n A 1 216 ASN 216 215 215 ASN ASN A . n A 1 217 GLY 217 216 216 GLY GLY A . n A 1 218 ASN 218 217 217 ASN ASN A . n A 1 219 ALA 219 218 218 ALA ALA A . n A 1 220 GLN 220 219 219 GLN GLN A . n A 1 221 THR 221 220 220 THR THR A . n A 1 222 LYS 222 221 221 LYS LYS A . n A 1 223 ALA 223 222 222 ALA ALA A . n A 1 224 GLY 224 223 223 GLY GLY A . n A 1 225 ILE 225 224 224 ILE ILE A . n A 1 226 VAL 226 225 225 VAL VAL A . n A 1 227 LEU 227 226 226 LEU LEU A . n A 1 228 ASN 228 227 227 ASN ASN A . n A 1 229 LEU 229 228 228 LEU LEU A . n A 1 230 ASN 230 229 229 ASN ASN A . n A 1 231 TRP 231 230 230 TRP TRP A . n A 1 232 VAL 232 231 231 VAL VAL A . n A 1 233 ASN 233 232 232 ASN ASN A . n A 1 234 ALA 234 233 233 ALA ALA A . n A 1 235 ALA 235 234 234 ALA ALA A . n A 1 236 SER 236 235 235 SER SER A . n A 1 237 ASP 237 236 236 ASP ASP A . n A 1 238 SER 238 237 237 SER SER A . n A 1 239 PRO 239 238 238 PRO PRO A . n A 1 240 GLU 240 239 239 GLU GLU A . n A 1 241 ASP 241 240 240 ASP ASP A . n A 1 242 GLN 242 241 241 GLN GLN A . n A 1 243 ALA 243 242 242 ALA ALA A . n A 1 244 ALA 244 243 243 ALA ALA A . n A 1 245 ALA 245 244 244 ALA ALA A . n A 1 246 ARG 246 245 245 ARG ARG A . n A 1 247 ARG 247 246 246 ARG ARG A . n A 1 248 TYR 248 247 247 TYR TYR A . n A 1 249 ASP 249 248 248 ASP ASP A . n A 1 250 GLN 250 249 249 GLN GLN A . n A 1 251 PHE 251 250 250 PHE PHE A . n A 1 252 PHE 252 251 251 PHE PHE A . n A 1 253 ASN 253 252 252 ASN ASN A . n A 1 254 ARG 254 253 253 ARG ARG A . n A 1 255 TRP 255 254 254 TRP TRP A . n A 1 256 PHE 256 255 255 PHE PHE A . n A 1 257 ALA 257 256 256 ALA ALA A . n A 1 258 GLU 258 257 257 GLU GLU A . n A 1 259 PRO 259 258 258 PRO PRO A . n A 1 260 LEU 260 259 259 LEU LEU A . n A 1 261 TYR 261 260 260 TYR TYR A . n A 1 262 ASN 262 261 261 ASN ASN A . n A 1 263 GLY 263 262 262 GLY GLY A . n A 1 264 ARG 264 263 263 ARG ARG A . n A 1 265 TYR 265 264 264 TYR TYR A . n A 1 266 PRO 266 265 265 PRO PRO A . n A 1 267 GLU 267 266 266 GLU GLU A . n A 1 268 GLU 268 267 267 GLU GLU A . n A 1 269 LEU 269 268 268 LEU LEU A . n A 1 270 LEU 270 269 269 LEU LEU A . n A 1 271 GLU 271 270 270 GLU GLU A . n A 1 272 TRP 272 271 271 TRP TRP A . n A 1 273 TYR 273 272 272 TYR TYR A . n A 1 274 GLY 274 273 273 GLY GLY A . n A 1 275 ARG 275 274 274 ARG ARG A . n A 1 276 ASP 276 275 275 ASP ASP A . n A 1 277 LEU 277 276 276 LEU LEU A . n A 1 278 VAL 278 277 277 VAL VAL A . n A 1 279 PRO 279 278 278 PRO PRO A . n A 1 280 VAL 280 279 279 VAL VAL A . n A 1 281 GLN 281 280 280 GLN GLN A . n A 1 282 PRO 282 281 281 PRO PRO A . n A 1 283 GLY 283 282 282 GLY GLY A . n A 1 284 ASP 284 283 283 ASP ASP A . n A 1 285 PHE 285 284 284 PHE PHE A . n A 1 286 ASP 286 285 285 ASP ASP A . n A 1 287 ILE 287 286 286 ILE ILE A . n A 1 288 ILE 288 287 287 ILE ILE A . n A 1 289 THR 289 288 288 THR THR A . n A 1 290 THR 290 289 289 THR THR A . n A 1 291 PRO 291 290 290 PRO PRO A . n A 1 292 THR 292 291 291 THR THR A . n A 1 293 ASP 293 292 292 ASP ASP A . n A 1 294 PHE 294 293 293 PHE PHE A . n A 1 295 LEU 295 294 294 LEU LEU A . n A 1 296 ALA 296 295 295 ALA ALA A . n A 1 297 VAL 297 296 296 VAL VAL A . n A 1 298 ASN 298 297 297 ASN ASN A . n A 1 299 TYR 299 298 298 TYR TYR A . n A 1 300 TYR 300 299 299 TYR TYR A . n A 1 301 ALA 301 300 300 ALA ALA A . n A 1 302 ARG 302 301 301 ARG ARG A . n A 1 303 THR 303 302 302 THR THR A . n A 1 304 THR 304 303 303 THR THR A . n A 1 305 VAL 305 304 304 VAL VAL A . n A 1 306 LYS 306 305 305 LYS LYS A . n A 1 307 ALA 307 306 306 ALA ALA A . n A 1 308 GLY 308 307 307 GLY GLY A . n A 1 309 SER 309 308 308 SER SER A . n A 1 310 THR 310 309 309 THR THR A . n A 1 311 ASP 311 310 310 ASP ASP A . n A 1 312 PRO 312 311 311 PRO PRO A . n A 1 313 MET 313 312 312 MET MET A . n A 1 314 LEU 314 313 313 LEU LEU A . n A 1 315 GLN 315 314 314 GLN GLN A . n A 1 316 VAL 316 315 315 VAL VAL A . n A 1 317 ASP 317 316 316 ASP ASP A . n A 1 318 PHE 318 317 317 PHE PHE A . n A 1 319 VAL 319 318 318 VAL VAL A . n A 1 320 ARG 320 319 319 ARG ARG A . n A 1 321 PRO 321 320 320 PRO PRO A . n A 1 322 PRO 322 321 321 PRO PRO A . n A 1 323 GLY 323 322 322 GLY GLY A . n A 1 324 GLU 324 323 323 GLU GLU A . n A 1 325 TYR 325 324 324 TYR TYR A . n A 1 326 THR 326 325 325 THR THR A . n A 1 327 ALA 327 326 326 ALA ALA A . n A 1 328 MET 328 327 327 MET MET A . n A 1 329 ASP 329 328 328 ASP ASP A . n A 1 330 TRP 330 329 329 TRP TRP A . n A 1 331 GLU 331 330 330 GLU GLU A . n A 1 332 VAL 332 331 331 VAL VAL A . n A 1 333 TYR 333 332 332 TYR TYR A . n A 1 334 PRO 334 333 333 PRO PRO A . n A 1 335 GLN 335 334 334 GLN GLN A . n A 1 336 GLY 336 335 335 GLY GLY A . n A 1 337 LEU 337 336 336 LEU LEU A . n A 1 338 TYR 338 337 337 TYR TYR A . n A 1 339 ASN 339 338 338 ASN ASN A . n A 1 340 ILE 340 339 339 ILE ILE A . n A 1 341 LEU 341 340 340 LEU LEU A . n A 1 342 ASN 342 341 341 ASN ASN A . n A 1 343 TRP 343 342 342 TRP TRP A . n A 1 344 LEU 344 343 343 LEU LEU A . n A 1 345 HIS 345 344 344 HIS HIS A . n A 1 346 THR 346 345 345 THR THR A . n A 1 347 ASP 347 346 346 ASP ASP A . n A 1 348 TYR 348 347 347 TYR TYR A . n A 1 349 ALA 349 348 348 ALA ALA A . n A 1 350 PRO 350 349 349 PRO PRO A . n A 1 351 PRO 351 350 350 PRO PRO A . n A 1 352 ALA 352 351 351 ALA ALA A . n A 1 353 LEU 353 352 352 LEU LEU A . n A 1 354 TYR 354 353 353 TYR TYR A . n A 1 355 VAL 355 354 354 VAL VAL A . n A 1 356 THR 356 355 355 THR THR A . n A 1 357 GLU 357 356 356 GLU GLU A . n A 1 358 ASN 358 357 357 ASN ASN A . n A 1 359 GLY 359 358 358 GLY GLY A . n A 1 360 ALA 360 359 359 ALA ALA A . n A 1 361 ALA 361 360 360 ALA ALA A . n A 1 362 TYR 362 361 361 TYR TYR A . n A 1 363 ASP 363 362 362 ASP ASP A . n A 1 364 ASP 364 363 363 ASP ASP A . n A 1 365 GLN 365 364 364 GLN GLN A . n A 1 366 VAL 366 365 365 VAL VAL A . n A 1 367 SER 367 366 366 SER SER A . n A 1 368 ALA 368 367 367 ALA ALA A . n A 1 369 ALA 369 368 368 ALA ALA A . n A 1 370 GLY 370 369 369 GLY GLY A . n A 1 371 GLU 371 370 370 GLU GLU A . n A 1 372 VAL 372 371 371 VAL VAL A . n A 1 373 ASP 373 372 372 ASP ASP A . n A 1 374 ASP 374 373 373 ASP ASP A . n A 1 375 PRO 375 374 374 PRO PRO A . n A 1 376 GLN 376 375 375 GLN GLN A . n A 1 377 ARG 377 376 376 ARG ARG A . n A 1 378 LEU 378 377 377 LEU LEU A . n A 1 379 ALA 379 378 378 ALA ALA A . n A 1 380 TYR 380 379 379 TYR TYR A . n A 1 381 LEU 381 380 380 LEU LEU A . n A 1 382 GLU 382 381 381 GLU GLU A . n A 1 383 GLY 383 382 382 GLY GLY A . n A 1 384 HIS 384 383 383 HIS HIS A . n A 1 385 PHE 385 384 384 PHE PHE A . n A 1 386 GLU 386 385 385 GLU GLU A . n A 1 387 ALA 387 386 386 ALA ALA A . n A 1 388 ALA 388 387 387 ALA ALA A . n A 1 389 TYR 389 388 388 TYR TYR A . n A 1 390 ARG 390 389 389 ARG ARG A . n A 1 391 ALA 391 390 390 ALA ALA A . n A 1 392 ILE 392 391 391 ILE ILE A . n A 1 393 GLN 393 392 392 GLN GLN A . n A 1 394 ALA 394 393 393 ALA ALA A . n A 1 395 GLY 395 394 394 GLY GLY A . n A 1 396 ILE 396 395 395 ILE ILE A . n A 1 397 PRO 397 396 396 PRO PRO A . n A 1 398 LEU 398 397 397 LEU LEU A . n A 1 399 LYS 399 398 398 LYS LYS A . n A 1 400 GLY 400 399 399 GLY GLY A . n A 1 401 TYR 401 400 400 TYR TYR A . n A 1 402 PHE 402 401 401 PHE PHE A . n A 1 403 VAL 403 402 402 VAL VAL A . n A 1 404 TRP 404 403 403 TRP TRP A . n A 1 405 SER 405 404 404 SER SER A . n A 1 406 LEU 406 405 405 LEU LEU A . n A 1 407 MET 407 406 406 MET MET A . n A 1 408 ASP 408 407 407 ASP ASP A . n A 1 409 ASN 409 408 408 ASN ASN A . n A 1 410 PHE 410 409 409 PHE PHE A . n A 1 411 GLU 411 410 410 GLU GLU A . n A 1 412 TRP 412 411 411 TRP TRP A . n A 1 413 GLY 413 412 412 GLY GLY A . n A 1 414 ARG 414 413 413 ARG ARG A . n A 1 415 GLY 415 414 414 GLY GLY A . n A 1 416 PHE 416 415 415 PHE PHE A . n A 1 417 GLU 417 416 416 GLU GLU A . n A 1 418 LYS 418 417 417 LYS LYS A . n A 1 419 ARG 419 418 418 ARG ARG A . n A 1 420 PHE 420 419 419 PHE PHE A . n A 1 421 GLY 421 420 420 GLY GLY A . n A 1 422 ILE 422 421 421 ILE ILE A . n A 1 423 VAL 423 422 422 VAL VAL A . n A 1 424 PHE 424 423 423 PHE PHE A . n A 1 425 VAL 425 424 424 VAL VAL A . n A 1 426 ASP 426 425 425 ASP ASP A . n A 1 427 TYR 427 426 426 TYR TYR A . n A 1 428 ALA 428 427 427 ALA ALA A . n A 1 429 THR 429 428 428 THR THR A . n A 1 430 GLN 430 429 429 GLN GLN A . n A 1 431 GLN 431 430 430 GLN GLN A . n A 1 432 ARG 432 431 431 ARG ARG A . n A 1 433 ILE 433 432 432 ILE ILE A . n A 1 434 ILE 434 433 433 ILE ILE A . n A 1 435 LYS 435 434 434 LYS LYS A . n A 1 436 ARG 436 435 435 ARG ARG A . n A 1 437 SER 437 436 436 SER SER A . n A 1 438 GLY 438 437 437 GLY GLY A . n A 1 439 LYS 439 438 438 LYS LYS A . n A 1 440 TRP 440 439 439 TRP TRP A . n A 1 441 PHE 441 440 440 PHE PHE A . n A 1 442 SER 442 441 441 SER SER A . n A 1 443 GLN 443 442 442 GLN GLN A . n A 1 444 VAL 444 443 443 VAL VAL A . n A 1 445 THR 445 444 444 THR THR A . n A 1 446 ARG 446 445 445 ARG ARG A . n A 1 447 ALA 447 446 446 ALA ALA A . n A 1 448 ASN 448 447 447 ASN ASN A . n A 1 449 GLY 449 448 448 GLY GLY A . n A 1 450 LEU 450 449 449 LEU LEU A . n A 1 451 PRO 451 450 450 PRO PRO A . n A 1 452 ALA 452 451 ? ? ? A . n A 1 453 PRO 453 452 ? ? ? A . n A 1 454 GLN 454 453 ? ? ? A . n A 1 455 THR 455 454 ? ? ? A . n A 1 456 THR 456 455 ? ? ? A . n A 1 457 LEU 457 456 ? ? ? A . n A 1 458 PRO 458 457 ? ? ? A . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 masa-watanabe@aist.go.jp Masahiro Watanabe ? 'principal investigator/group leader' 0000-0001-5211-1333 4 matsuzawa.tomohiko@kagawa-u.ac.jp Tomohiko Matsuzawa ? 'principal investigator/group leader' 0000-0001-9315-5383 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GLC 1 501 501 GLC GLC A . D 4 SO4 1 502 601 SO4 SO4 A . E 5 HOH 1 601 87 HOH HOH A . E 5 HOH 2 602 103 HOH HOH A . E 5 HOH 3 603 59 HOH HOH A . E 5 HOH 4 604 107 HOH HOH A . E 5 HOH 5 605 2 HOH HOH A . E 5 HOH 6 606 4 HOH HOH A . E 5 HOH 7 607 10 HOH HOH A . E 5 HOH 8 608 57 HOH HOH A . E 5 HOH 9 609 105 HOH HOH A . E 5 HOH 10 610 88 HOH HOH A . E 5 HOH 11 611 44 HOH HOH A . E 5 HOH 12 612 116 HOH HOH A . E 5 HOH 13 613 108 HOH HOH A . E 5 HOH 14 614 110 HOH HOH A . E 5 HOH 15 615 5 HOH HOH A . E 5 HOH 16 616 3 HOH HOH A . E 5 HOH 17 617 78 HOH HOH A . E 5 HOH 18 618 104 HOH HOH A . E 5 HOH 19 619 132 HOH HOH A . E 5 HOH 20 620 51 HOH HOH A . E 5 HOH 21 621 122 HOH HOH A . E 5 HOH 22 622 74 HOH HOH A . E 5 HOH 23 623 27 HOH HOH A . E 5 HOH 24 624 1 HOH HOH A . E 5 HOH 25 625 61 HOH HOH A . E 5 HOH 26 626 35 HOH HOH A . E 5 HOH 27 627 124 HOH HOH A . E 5 HOH 28 628 50 HOH HOH A . E 5 HOH 29 629 9 HOH HOH A . E 5 HOH 30 630 12 HOH HOH A . E 5 HOH 31 631 98 HOH HOH A . E 5 HOH 32 632 91 HOH HOH A . E 5 HOH 33 633 64 HOH HOH A . E 5 HOH 34 634 80 HOH HOH A . E 5 HOH 35 635 47 HOH HOH A . E 5 HOH 36 636 42 HOH HOH A . E 5 HOH 37 637 113 HOH HOH A . E 5 HOH 38 638 102 HOH HOH A . E 5 HOH 39 639 73 HOH HOH A . E 5 HOH 40 640 106 HOH HOH A . E 5 HOH 41 641 19 HOH HOH A . E 5 HOH 42 642 62 HOH HOH A . E 5 HOH 43 643 54 HOH HOH A . E 5 HOH 44 644 53 HOH HOH A . E 5 HOH 45 645 14 HOH HOH A . E 5 HOH 46 646 68 HOH HOH A . E 5 HOH 47 647 72 HOH HOH A . E 5 HOH 48 648 129 HOH HOH A . E 5 HOH 49 649 16 HOH HOH A . E 5 HOH 50 650 40 HOH HOH A . E 5 HOH 51 651 126 HOH HOH A . E 5 HOH 52 652 63 HOH HOH A . E 5 HOH 53 653 97 HOH HOH A . E 5 HOH 54 654 133 HOH HOH A . E 5 HOH 55 655 90 HOH HOH A . E 5 HOH 56 656 23 HOH HOH A . E 5 HOH 57 657 30 HOH HOH A . E 5 HOH 58 658 109 HOH HOH A . E 5 HOH 59 659 20 HOH HOH A . E 5 HOH 60 660 114 HOH HOH A . E 5 HOH 61 661 18 HOH HOH A . E 5 HOH 62 662 92 HOH HOH A . E 5 HOH 63 663 46 HOH HOH A . E 5 HOH 64 664 94 HOH HOH A . E 5 HOH 65 665 11 HOH HOH A . E 5 HOH 66 666 65 HOH HOH A . E 5 HOH 67 667 43 HOH HOH A . E 5 HOH 68 668 39 HOH HOH A . E 5 HOH 69 669 13 HOH HOH A . E 5 HOH 70 670 25 HOH HOH A . E 5 HOH 71 671 49 HOH HOH A . E 5 HOH 72 672 28 HOH HOH A . E 5 HOH 73 673 117 HOH HOH A . E 5 HOH 74 674 34 HOH HOH A . E 5 HOH 75 675 36 HOH HOH A . E 5 HOH 76 676 69 HOH HOH A . E 5 HOH 77 677 79 HOH HOH A . E 5 HOH 78 678 7 HOH HOH A . E 5 HOH 79 679 118 HOH HOH A . E 5 HOH 80 680 26 HOH HOH A . E 5 HOH 81 681 31 HOH HOH A . E 5 HOH 82 682 32 HOH HOH A . E 5 HOH 83 683 77 HOH HOH A . E 5 HOH 84 684 125 HOH HOH A . E 5 HOH 85 685 38 HOH HOH A . E 5 HOH 86 686 55 HOH HOH A . E 5 HOH 87 687 41 HOH HOH A . E 5 HOH 88 688 33 HOH HOH A . E 5 HOH 89 689 45 HOH HOH A . E 5 HOH 90 690 15 HOH HOH A . E 5 HOH 91 691 29 HOH HOH A . E 5 HOH 92 692 128 HOH HOH A . E 5 HOH 93 693 81 HOH HOH A . E 5 HOH 94 694 24 HOH HOH A . E 5 HOH 95 695 37 HOH HOH A . E 5 HOH 96 696 76 HOH HOH A . E 5 HOH 97 697 111 HOH HOH A . E 5 HOH 98 698 130 HOH HOH A . E 5 HOH 99 699 131 HOH HOH A . E 5 HOH 100 700 85 HOH HOH A . E 5 HOH 101 701 96 HOH HOH A . E 5 HOH 102 702 8 HOH HOH A . E 5 HOH 103 703 58 HOH HOH A . E 5 HOH 104 704 119 HOH HOH A . E 5 HOH 105 705 82 HOH HOH A . E 5 HOH 106 706 120 HOH HOH A . E 5 HOH 107 707 60 HOH HOH A . E 5 HOH 108 708 67 HOH HOH A . E 5 HOH 109 709 21 HOH HOH A . E 5 HOH 110 710 70 HOH HOH A . E 5 HOH 111 711 100 HOH HOH A . E 5 HOH 112 712 127 HOH HOH A . E 5 HOH 113 713 137 HOH HOH A . E 5 HOH 114 714 48 HOH HOH A . E 5 HOH 115 715 115 HOH HOH A . E 5 HOH 116 716 136 HOH HOH A . E 5 HOH 117 717 95 HOH HOH A . E 5 HOH 118 718 112 HOH HOH A . E 5 HOH 119 719 6 HOH HOH A . E 5 HOH 120 720 22 HOH HOH A . E 5 HOH 121 721 17 HOH HOH A . E 5 HOH 122 722 56 HOH HOH A . E 5 HOH 123 723 99 HOH HOH A . E 5 HOH 124 724 75 HOH HOH A . E 5 HOH 125 725 121 HOH HOH A . E 5 HOH 126 726 86 HOH HOH A . E 5 HOH 127 727 134 HOH HOH A . E 5 HOH 128 728 84 HOH HOH A . E 5 HOH 129 729 135 HOH HOH A . E 5 HOH 130 730 93 HOH HOH A . E 5 HOH 131 731 83 HOH HOH A . E 5 HOH 132 732 101 HOH HOH A . E 5 HOH 133 733 89 HOH HOH A . E 5 HOH 134 734 66 HOH HOH A . E 5 HOH 135 735 71 HOH HOH A . E 5 HOH 136 736 123 HOH HOH A . E 5 HOH 137 737 52 HOH HOH A . E 5 HOH 138 738 138 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 210 ? 1 MORE -17 ? 1 'SSA (A^2)' 16310 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-11-02 2 'Structure model' 1 1 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0238 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7WDP _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 NE2 A HIS 63 ? ? 1_555 NE2 A HIS 63 ? ? 37_454 1.38 2 1 CE1 A HIS 63 ? ? 1_555 NE2 A HIS 63 ? ? 37_454 1.39 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A PRO 7 ? ? CA A PRO 7 ? ? CB A PRO 7 ? ? 96.03 103.30 -7.27 1.20 N 2 1 CB A HIS 63 ? ? CA A HIS 63 ? ? C A HIS 63 ? ? 132.78 110.40 22.38 2.00 N 3 1 CA A HIS 63 ? ? CB A HIS 63 ? ? CG A HIS 63 ? ? 126.05 113.60 12.45 1.70 N 4 1 CB A ARG 64 ? ? CA A ARG 64 ? ? C A ARG 64 ? ? 96.78 110.40 -13.62 2.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 8 ? ? -115.44 -84.87 2 1 ALA A 58 ? ? 51.18 -126.92 3 1 HIS A 125 ? ? -119.59 51.88 4 1 TRP A 126 ? ? 90.50 8.67 5 1 ASP A 127 ? ? -116.05 51.46 6 1 THR A 167 ? ? -72.20 -75.19 7 1 GLU A 170 ? ? 58.63 73.83 8 1 TYR A 299 ? ? -134.74 -35.33 9 1 SER A 308 ? ? -151.59 62.34 10 1 ASP A 328 ? ? 72.56 38.67 11 1 TYR A 332 ? ? -153.71 74.50 12 1 ASP A 373 ? ? -118.34 68.61 13 1 TRP A 411 ? ? 45.00 -121.38 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 HIS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 8 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ARG _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 9 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -144.82 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A VAL 1 ? A VAL 2 3 1 Y 1 A SER 2 ? A SER 3 4 1 Y 1 A THR 3 ? A THR 4 5 1 Y 1 A GLN 4 ? A GLN 5 6 1 Y 1 A ASN 5 ? A ASN 6 7 1 Y 1 A ALA 451 ? A ALA 452 8 1 Y 1 A PRO 452 ? A PRO 453 9 1 Y 1 A GLN 453 ? A GLN 454 10 1 Y 1 A THR 454 ? A THR 455 11 1 Y 1 A THR 455 ? A THR 456 12 1 Y 1 A LEU 456 ? A LEU 457 13 1 Y 1 A PRO 457 ? A PRO 458 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLC C1 C N S 88 GLC C2 C N R 89 GLC C3 C N S 90 GLC C4 C N S 91 GLC C5 C N R 92 GLC C6 C N N 93 GLC O1 O N N 94 GLC O2 O N N 95 GLC O3 O N N 96 GLC O4 O N N 97 GLC O5 O N N 98 GLC O6 O N N 99 GLC H1 H N N 100 GLC H2 H N N 101 GLC H3 H N N 102 GLC H4 H N N 103 GLC H5 H N N 104 GLC H61 H N N 105 GLC H62 H N N 106 GLC HO1 H N N 107 GLC HO2 H N N 108 GLC HO3 H N N 109 GLC HO4 H N N 110 GLC HO6 H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 LEU N N N N 207 LEU CA C N S 208 LEU C C N N 209 LEU O O N N 210 LEU CB C N N 211 LEU CG C N N 212 LEU CD1 C N N 213 LEU CD2 C N N 214 LEU OXT O N N 215 LEU H H N N 216 LEU H2 H N N 217 LEU HA H N N 218 LEU HB2 H N N 219 LEU HB3 H N N 220 LEU HG H N N 221 LEU HD11 H N N 222 LEU HD12 H N N 223 LEU HD13 H N N 224 LEU HD21 H N N 225 LEU HD22 H N N 226 LEU HD23 H N N 227 LEU HXT H N N 228 LYS N N N N 229 LYS CA C N S 230 LYS C C N N 231 LYS O O N N 232 LYS CB C N N 233 LYS CG C N N 234 LYS CD C N N 235 LYS CE C N N 236 LYS NZ N N N 237 LYS OXT O N N 238 LYS H H N N 239 LYS H2 H N N 240 LYS HA H N N 241 LYS HB2 H N N 242 LYS HB3 H N N 243 LYS HG2 H N N 244 LYS HG3 H N N 245 LYS HD2 H N N 246 LYS HD3 H N N 247 LYS HE2 H N N 248 LYS HE3 H N N 249 LYS HZ1 H N N 250 LYS HZ2 H N N 251 LYS HZ3 H N N 252 LYS HXT H N N 253 MET N N N N 254 MET CA C N S 255 MET C C N N 256 MET O O N N 257 MET CB C N N 258 MET CG C N N 259 MET SD S N N 260 MET CE C N N 261 MET OXT O N N 262 MET H H N N 263 MET H2 H N N 264 MET HA H N N 265 MET HB2 H N N 266 MET HB3 H N N 267 MET HG2 H N N 268 MET HG3 H N N 269 MET HE1 H N N 270 MET HE2 H N N 271 MET HE3 H N N 272 MET HXT H N N 273 PHE N N N N 274 PHE CA C N S 275 PHE C C N N 276 PHE O O N N 277 PHE CB C N N 278 PHE CG C Y N 279 PHE CD1 C Y N 280 PHE CD2 C Y N 281 PHE CE1 C Y N 282 PHE CE2 C Y N 283 PHE CZ C Y N 284 PHE OXT O N N 285 PHE H H N N 286 PHE H2 H N N 287 PHE HA H N N 288 PHE HB2 H N N 289 PHE HB3 H N N 290 PHE HD1 H N N 291 PHE HD2 H N N 292 PHE HE1 H N N 293 PHE HE2 H N N 294 PHE HZ H N N 295 PHE HXT H N N 296 PRO N N N N 297 PRO CA C N S 298 PRO C C N N 299 PRO O O N N 300 PRO CB C N N 301 PRO CG C N N 302 PRO CD C N N 303 PRO OXT O N N 304 PRO H H N N 305 PRO HA H N N 306 PRO HB2 H N N 307 PRO HB3 H N N 308 PRO HG2 H N N 309 PRO HG3 H N N 310 PRO HD2 H N N 311 PRO HD3 H N N 312 PRO HXT H N N 313 SER N N N N 314 SER CA C N S 315 SER C C N N 316 SER O O N N 317 SER CB C N N 318 SER OG O N N 319 SER OXT O N N 320 SER H H N N 321 SER H2 H N N 322 SER HA H N N 323 SER HB2 H N N 324 SER HB3 H N N 325 SER HG H N N 326 SER HXT H N N 327 SO4 S S N N 328 SO4 O1 O N N 329 SO4 O2 O N N 330 SO4 O3 O N N 331 SO4 O4 O N N 332 THR N N N N 333 THR CA C N S 334 THR C C N N 335 THR O O N N 336 THR CB C N R 337 THR OG1 O N N 338 THR CG2 C N N 339 THR OXT O N N 340 THR H H N N 341 THR H2 H N N 342 THR HA H N N 343 THR HB H N N 344 THR HG1 H N N 345 THR HG21 H N N 346 THR HG22 H N N 347 THR HG23 H N N 348 THR HXT H N N 349 TRP N N N N 350 TRP CA C N S 351 TRP C C N N 352 TRP O O N N 353 TRP CB C N N 354 TRP CG C Y N 355 TRP CD1 C Y N 356 TRP CD2 C Y N 357 TRP NE1 N Y N 358 TRP CE2 C Y N 359 TRP CE3 C Y N 360 TRP CZ2 C Y N 361 TRP CZ3 C Y N 362 TRP CH2 C Y N 363 TRP OXT O N N 364 TRP H H N N 365 TRP H2 H N N 366 TRP HA H N N 367 TRP HB2 H N N 368 TRP HB3 H N N 369 TRP HD1 H N N 370 TRP HE1 H N N 371 TRP HE3 H N N 372 TRP HZ2 H N N 373 TRP HZ3 H N N 374 TRP HH2 H N N 375 TRP HXT H N N 376 TYR N N N N 377 TYR CA C N S 378 TYR C C N N 379 TYR O O N N 380 TYR CB C N N 381 TYR CG C Y N 382 TYR CD1 C Y N 383 TYR CD2 C Y N 384 TYR CE1 C Y N 385 TYR CE2 C Y N 386 TYR CZ C Y N 387 TYR OH O N N 388 TYR OXT O N N 389 TYR H H N N 390 TYR H2 H N N 391 TYR HA H N N 392 TYR HB2 H N N 393 TYR HB3 H N N 394 TYR HD1 H N N 395 TYR HD2 H N N 396 TYR HE1 H N N 397 TYR HE2 H N N 398 TYR HH H N N 399 TYR HXT H N N 400 VAL N N N N 401 VAL CA C N S 402 VAL C C N N 403 VAL O O N N 404 VAL CB C N N 405 VAL CG1 C N N 406 VAL CG2 C N N 407 VAL OXT O N N 408 VAL H H N N 409 VAL H2 H N N 410 VAL HA H N N 411 VAL HB H N N 412 VAL HG11 H N N 413 VAL HG12 H N N 414 VAL HG13 H N N 415 VAL HG21 H N N 416 VAL HG22 H N N 417 VAL HG23 H N N 418 VAL HXT H N N 419 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLC C1 C2 sing N N 83 GLC C1 O1 sing N N 84 GLC C1 O5 sing N N 85 GLC C1 H1 sing N N 86 GLC C2 C3 sing N N 87 GLC C2 O2 sing N N 88 GLC C2 H2 sing N N 89 GLC C3 C4 sing N N 90 GLC C3 O3 sing N N 91 GLC C3 H3 sing N N 92 GLC C4 C5 sing N N 93 GLC C4 O4 sing N N 94 GLC C4 H4 sing N N 95 GLC C5 C6 sing N N 96 GLC C5 O5 sing N N 97 GLC C5 H5 sing N N 98 GLC C6 O6 sing N N 99 GLC C6 H61 sing N N 100 GLC C6 H62 sing N N 101 GLC O1 HO1 sing N N 102 GLC O2 HO2 sing N N 103 GLC O3 HO3 sing N N 104 GLC O4 HO4 sing N N 105 GLC O6 HO6 sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LEU N CA sing N N 197 LEU N H sing N N 198 LEU N H2 sing N N 199 LEU CA C sing N N 200 LEU CA CB sing N N 201 LEU CA HA sing N N 202 LEU C O doub N N 203 LEU C OXT sing N N 204 LEU CB CG sing N N 205 LEU CB HB2 sing N N 206 LEU CB HB3 sing N N 207 LEU CG CD1 sing N N 208 LEU CG CD2 sing N N 209 LEU CG HG sing N N 210 LEU CD1 HD11 sing N N 211 LEU CD1 HD12 sing N N 212 LEU CD1 HD13 sing N N 213 LEU CD2 HD21 sing N N 214 LEU CD2 HD22 sing N N 215 LEU CD2 HD23 sing N N 216 LEU OXT HXT sing N N 217 LYS N CA sing N N 218 LYS N H sing N N 219 LYS N H2 sing N N 220 LYS CA C sing N N 221 LYS CA CB sing N N 222 LYS CA HA sing N N 223 LYS C O doub N N 224 LYS C OXT sing N N 225 LYS CB CG sing N N 226 LYS CB HB2 sing N N 227 LYS CB HB3 sing N N 228 LYS CG CD sing N N 229 LYS CG HG2 sing N N 230 LYS CG HG3 sing N N 231 LYS CD CE sing N N 232 LYS CD HD2 sing N N 233 LYS CD HD3 sing N N 234 LYS CE NZ sing N N 235 LYS CE HE2 sing N N 236 LYS CE HE3 sing N N 237 LYS NZ HZ1 sing N N 238 LYS NZ HZ2 sing N N 239 LYS NZ HZ3 sing N N 240 LYS OXT HXT sing N N 241 MET N CA sing N N 242 MET N H sing N N 243 MET N H2 sing N N 244 MET CA C sing N N 245 MET CA CB sing N N 246 MET CA HA sing N N 247 MET C O doub N N 248 MET C OXT sing N N 249 MET CB CG sing N N 250 MET CB HB2 sing N N 251 MET CB HB3 sing N N 252 MET CG SD sing N N 253 MET CG HG2 sing N N 254 MET CG HG3 sing N N 255 MET SD CE sing N N 256 MET CE HE1 sing N N 257 MET CE HE2 sing N N 258 MET CE HE3 sing N N 259 MET OXT HXT sing N N 260 PHE N CA sing N N 261 PHE N H sing N N 262 PHE N H2 sing N N 263 PHE CA C sing N N 264 PHE CA CB sing N N 265 PHE CA HA sing N N 266 PHE C O doub N N 267 PHE C OXT sing N N 268 PHE CB CG sing N N 269 PHE CB HB2 sing N N 270 PHE CB HB3 sing N N 271 PHE CG CD1 doub Y N 272 PHE CG CD2 sing Y N 273 PHE CD1 CE1 sing Y N 274 PHE CD1 HD1 sing N N 275 PHE CD2 CE2 doub Y N 276 PHE CD2 HD2 sing N N 277 PHE CE1 CZ doub Y N 278 PHE CE1 HE1 sing N N 279 PHE CE2 CZ sing Y N 280 PHE CE2 HE2 sing N N 281 PHE CZ HZ sing N N 282 PHE OXT HXT sing N N 283 PRO N CA sing N N 284 PRO N CD sing N N 285 PRO N H sing N N 286 PRO CA C sing N N 287 PRO CA CB sing N N 288 PRO CA HA sing N N 289 PRO C O doub N N 290 PRO C OXT sing N N 291 PRO CB CG sing N N 292 PRO CB HB2 sing N N 293 PRO CB HB3 sing N N 294 PRO CG CD sing N N 295 PRO CG HG2 sing N N 296 PRO CG HG3 sing N N 297 PRO CD HD2 sing N N 298 PRO CD HD3 sing N N 299 PRO OXT HXT sing N N 300 SER N CA sing N N 301 SER N H sing N N 302 SER N H2 sing N N 303 SER CA C sing N N 304 SER CA CB sing N N 305 SER CA HA sing N N 306 SER C O doub N N 307 SER C OXT sing N N 308 SER CB OG sing N N 309 SER CB HB2 sing N N 310 SER CB HB3 sing N N 311 SER OG HG sing N N 312 SER OXT HXT sing N N 313 SO4 S O1 doub N N 314 SO4 S O2 doub N N 315 SO4 S O3 sing N N 316 SO4 S O4 sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GLC 1 B GLC 1 A GLC 502 n B 2 GLC 2 B GLC 2 A GLC 503 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpa1-4DGlcpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1a_1-5]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Glcp]{[(4+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 GLC 2 n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 GLC ? ? GLC ? ? 'SUBJECT OF INVESTIGATION' ? 2 SO4 ? ? SO4 ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 alpha-D-glucopyranose GLC 4 'SULFATE ION' SO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5XGZ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #