data_7WTJ # _entry.id 7WTJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7WTJ pdb_00007wtj 10.2210/pdb7wtj/pdb WWPDB D_1300027485 ? ? EMDB EMD-32788 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv286' _pdbx_database_related.db_id EMD-32788 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7WTJ _pdbx_database_status.recvd_initial_deposition_date 2022-02-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, X.' 1 ? 'Fu, W.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CN _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Res.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1001-0602 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 32 _citation.language ? _citation.page_first 691 _citation.page_last 694 _citation.title ;Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41422-022-00677-z _citation.pdbx_database_id_PubMed 35672388 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, L.' 1 ? primary 'Fu, W.' 2 ? primary 'Bao, L.' 3 ? primary 'Jia, Z.' 4 ? primary 'Zhang, Y.' 5 ? primary 'Zhou, Y.' 6 ? primary 'Wu, W.' 7 ? primary 'Wu, J.' 8 ? primary 'Zhang, Q.' 9 ? primary 'Gao, Y.' 10 ? primary 'Wang, K.' 11 ? primary 'Wang, Q.' 12 ? primary 'Qin, C.' 13 0000-0002-6261-1232 primary 'Wang, X.' 14 0000-0003-0635-278X # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7WTJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7WTJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Heavy chain of XGv286' 12878.352 1 ? ? ? ? 2 polymer man 'Light chain of XGv286' 11437.440 1 ? ? ? ? 3 polymer man 'Spike protein S1' 22836.854 1 ? ? RBD ? # _entity_name_com.entity_id 3 _entity_name_com.name 'S glycoprotein,E2,Peplomer protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;VQLVQSGAEVKKPGASVKVSCKASGYTFSSYYIHWVRQAPGQGPEWMAIINPGDGGASYAQKFQGRVTLTRDTSTSTLYM ELSSLRSEDTAVYYCARAEGSSWLGWFDPWGQGTLVTV ; ;VQLVQSGAEVKKPGASVKVSCKASGYTFSSYYIHWVRQAPGQGPEWMAIINPGDGGASYAQKFQGRVTLTRDTSTSTLYM ELSSLRSEDTAVYYCARAEGSSWLGWFDPWGQGTLVTV ; H ? 2 'polypeptide(L)' no no ;SVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSRSGTSASLAISGLRS EDEADYYCAAWDDGLSGSGWVFGGGTKLT ; ;SVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSRSGTSASLAISGLRS EDEADYYCAAWDDGLSGSGWVFGGGTKLT ; L ? 3 'polypeptide(L)' no no ;PNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCY FPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKS ; ;PNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCY FPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKS ; E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLN n 1 3 LEU n 1 4 VAL n 1 5 GLN n 1 6 SER n 1 7 GLY n 1 8 ALA n 1 9 GLU n 1 10 VAL n 1 11 LYS n 1 12 LYS n 1 13 PRO n 1 14 GLY n 1 15 ALA n 1 16 SER n 1 17 VAL n 1 18 LYS n 1 19 VAL n 1 20 SER n 1 21 CYS n 1 22 LYS n 1 23 ALA n 1 24 SER n 1 25 GLY n 1 26 TYR n 1 27 THR n 1 28 PHE n 1 29 SER n 1 30 SER n 1 31 TYR n 1 32 TYR n 1 33 ILE n 1 34 HIS n 1 35 TRP n 1 36 VAL n 1 37 ARG n 1 38 GLN n 1 39 ALA n 1 40 PRO n 1 41 GLY n 1 42 GLN n 1 43 GLY n 1 44 PRO n 1 45 GLU n 1 46 TRP n 1 47 MET n 1 48 ALA n 1 49 ILE n 1 50 ILE n 1 51 ASN n 1 52 PRO n 1 53 GLY n 1 54 ASP n 1 55 GLY n 1 56 GLY n 1 57 ALA n 1 58 SER n 1 59 TYR n 1 60 ALA n 1 61 GLN n 1 62 LYS n 1 63 PHE n 1 64 GLN n 1 65 GLY n 1 66 ARG n 1 67 VAL n 1 68 THR n 1 69 LEU n 1 70 THR n 1 71 ARG n 1 72 ASP n 1 73 THR n 1 74 SER n 1 75 THR n 1 76 SER n 1 77 THR n 1 78 LEU n 1 79 TYR n 1 80 MET n 1 81 GLU n 1 82 LEU n 1 83 SER n 1 84 SER n 1 85 LEU n 1 86 ARG n 1 87 SER n 1 88 GLU n 1 89 ASP n 1 90 THR n 1 91 ALA n 1 92 VAL n 1 93 TYR n 1 94 TYR n 1 95 CYS n 1 96 ALA n 1 97 ARG n 1 98 ALA n 1 99 GLU n 1 100 GLY n 1 101 SER n 1 102 SER n 1 103 TRP n 1 104 LEU n 1 105 GLY n 1 106 TRP n 1 107 PHE n 1 108 ASP n 1 109 PRO n 1 110 TRP n 1 111 GLY n 1 112 GLN n 1 113 GLY n 1 114 THR n 1 115 LEU n 1 116 VAL n 1 117 THR n 1 118 VAL n 2 1 SER n 2 2 VAL n 2 3 LEU n 2 4 THR n 2 5 GLN n 2 6 PRO n 2 7 PRO n 2 8 SER n 2 9 ALA n 2 10 SER n 2 11 GLY n 2 12 THR n 2 13 PRO n 2 14 GLY n 2 15 GLN n 2 16 ARG n 2 17 VAL n 2 18 THR n 2 19 ILE n 2 20 SER n 2 21 CYS n 2 22 SER n 2 23 GLY n 2 24 SER n 2 25 SER n 2 26 SER n 2 27 ASN n 2 28 ILE n 2 29 GLY n 2 30 SER n 2 31 ASN n 2 32 TYR n 2 33 VAL n 2 34 TYR n 2 35 TRP n 2 36 TYR n 2 37 GLN n 2 38 GLN n 2 39 LEU n 2 40 PRO n 2 41 GLY n 2 42 THR n 2 43 ALA n 2 44 PRO n 2 45 LYS n 2 46 LEU n 2 47 LEU n 2 48 ILE n 2 49 TYR n 2 50 ARG n 2 51 ASN n 2 52 ASN n 2 53 GLN n 2 54 ARG n 2 55 PRO n 2 56 SER n 2 57 GLY n 2 58 VAL n 2 59 PRO n 2 60 ASP n 2 61 ARG n 2 62 PHE n 2 63 SER n 2 64 GLY n 2 65 SER n 2 66 ARG n 2 67 SER n 2 68 GLY n 2 69 THR n 2 70 SER n 2 71 ALA n 2 72 SER n 2 73 LEU n 2 74 ALA n 2 75 ILE n 2 76 SER n 2 77 GLY n 2 78 LEU n 2 79 ARG n 2 80 SER n 2 81 GLU n 2 82 ASP n 2 83 GLU n 2 84 ALA n 2 85 ASP n 2 86 TYR n 2 87 TYR n 2 88 CYS n 2 89 ALA n 2 90 ALA n 2 91 TRP n 2 92 ASP n 2 93 ASP n 2 94 GLY n 2 95 LEU n 2 96 SER n 2 97 GLY n 2 98 SER n 2 99 GLY n 2 100 TRP n 2 101 VAL n 2 102 PHE n 2 103 GLY n 2 104 GLY n 2 105 GLY n 2 106 THR n 2 107 LYS n 2 108 LEU n 2 109 THR n 3 1 PRO n 3 2 ASN n 3 3 ILE n 3 4 THR n 3 5 ASN n 3 6 LEU n 3 7 CYS n 3 8 PRO n 3 9 PHE n 3 10 ASP n 3 11 GLU n 3 12 VAL n 3 13 PHE n 3 14 ASN n 3 15 ALA n 3 16 THR n 3 17 ARG n 3 18 PHE n 3 19 ALA n 3 20 SER n 3 21 VAL n 3 22 TYR n 3 23 ALA n 3 24 TRP n 3 25 ASN n 3 26 ARG n 3 27 LYS n 3 28 ARG n 3 29 ILE n 3 30 SER n 3 31 ASN n 3 32 CYS n 3 33 VAL n 3 34 ALA n 3 35 ASP n 3 36 TYR n 3 37 SER n 3 38 VAL n 3 39 LEU n 3 40 TYR n 3 41 ASN n 3 42 LEU n 3 43 ALA n 3 44 PRO n 3 45 PHE n 3 46 PHE n 3 47 THR n 3 48 PHE n 3 49 LYS n 3 50 CYS n 3 51 TYR n 3 52 GLY n 3 53 VAL n 3 54 SER n 3 55 PRO n 3 56 THR n 3 57 LYS n 3 58 LEU n 3 59 ASN n 3 60 ASP n 3 61 LEU n 3 62 CYS n 3 63 PHE n 3 64 THR n 3 65 ASN n 3 66 VAL n 3 67 TYR n 3 68 ALA n 3 69 ASP n 3 70 SER n 3 71 PHE n 3 72 VAL n 3 73 ILE n 3 74 ARG n 3 75 GLY n 3 76 ASP n 3 77 GLU n 3 78 VAL n 3 79 ARG n 3 80 GLN n 3 81 ILE n 3 82 ALA n 3 83 PRO n 3 84 GLY n 3 85 GLN n 3 86 THR n 3 87 GLY n 3 88 ASN n 3 89 ILE n 3 90 ALA n 3 91 ASP n 3 92 TYR n 3 93 ASN n 3 94 TYR n 3 95 LYS n 3 96 LEU n 3 97 PRO n 3 98 ASP n 3 99 ASP n 3 100 PHE n 3 101 THR n 3 102 GLY n 3 103 CYS n 3 104 VAL n 3 105 ILE n 3 106 ALA n 3 107 TRP n 3 108 ASN n 3 109 SER n 3 110 ASN n 3 111 LYS n 3 112 LEU n 3 113 ASP n 3 114 SER n 3 115 LYS n 3 116 VAL n 3 117 SER n 3 118 GLY n 3 119 ASN n 3 120 TYR n 3 121 ASN n 3 122 TYR n 3 123 LEU n 3 124 TYR n 3 125 ARG n 3 126 LEU n 3 127 PHE n 3 128 ARG n 3 129 LYS n 3 130 SER n 3 131 ASN n 3 132 LEU n 3 133 LYS n 3 134 PRO n 3 135 PHE n 3 136 GLU n 3 137 ARG n 3 138 ASP n 3 139 ILE n 3 140 SER n 3 141 THR n 3 142 GLU n 3 143 ILE n 3 144 TYR n 3 145 GLN n 3 146 ALA n 3 147 GLY n 3 148 ASN n 3 149 LYS n 3 150 PRO n 3 151 CYS n 3 152 ASN n 3 153 GLY n 3 154 VAL n 3 155 ALA n 3 156 GLY n 3 157 PHE n 3 158 ASN n 3 159 CYS n 3 160 TYR n 3 161 PHE n 3 162 PRO n 3 163 LEU n 3 164 ARG n 3 165 SER n 3 166 TYR n 3 167 SER n 3 168 PHE n 3 169 ARG n 3 170 PRO n 3 171 THR n 3 172 TYR n 3 173 GLY n 3 174 VAL n 3 175 GLY n 3 176 HIS n 3 177 GLN n 3 178 PRO n 3 179 TYR n 3 180 ARG n 3 181 VAL n 3 182 VAL n 3 183 VAL n 3 184 LEU n 3 185 SER n 3 186 PHE n 3 187 GLU n 3 188 LEU n 3 189 LEU n 3 190 HIS n 3 191 ALA n 3 192 PRO n 3 193 ALA n 3 194 THR n 3 195 VAL n 3 196 CYS n 3 197 GLY n 3 198 PRO n 3 199 LYS n 3 200 LYS n 3 201 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 118 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 109 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 201 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7WTJ 7WTJ ? 1 ? 1 2 PDB 7WTJ 7WTJ ? 2 ? 1 3 UNP SPIKE_SARS2 P0DTC2 ? 3 ;PNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY FPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; 330 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7WTJ H 1 ? 118 ? 7WTJ 2 ? 119 ? 2 119 2 2 7WTJ L 1 ? 109 ? 7WTJ 2 ? 110 ? 2 110 3 3 7WTJ E 1 ? 201 ? P0DTC2 330 ? 530 ? 330 530 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 7WTJ ASP E 10 ? UNP P0DTC2 GLY 339 variant 339 1 3 7WTJ LEU E 42 ? UNP P0DTC2 SER 371 variant 371 2 3 7WTJ PRO E 44 ? UNP P0DTC2 SER 373 variant 373 3 3 7WTJ PHE E 46 ? UNP P0DTC2 SER 375 variant 375 4 3 7WTJ ASN E 88 ? UNP P0DTC2 LYS 417 variant 417 5 3 7WTJ LYS E 111 ? UNP P0DTC2 ASN 440 variant 440 6 3 7WTJ SER E 117 ? UNP P0DTC2 GLY 446 variant 446 7 3 7WTJ ASN E 148 ? UNP P0DTC2 SER 477 variant 477 8 3 7WTJ LYS E 149 ? UNP P0DTC2 THR 478 variant 478 9 3 7WTJ ALA E 155 ? UNP P0DTC2 GLU 484 variant 484 10 3 7WTJ ARG E 164 ? UNP P0DTC2 GLN 493 variant 493 11 3 7WTJ SER E 167 ? UNP P0DTC2 GLY 496 variant 496 12 3 7WTJ ARG E 169 ? UNP P0DTC2 GLN 498 variant 498 13 3 7WTJ TYR E 172 ? UNP P0DTC2 ASN 501 variant 501 14 3 7WTJ HIS E 176 ? UNP P0DTC2 TYR 505 variant 505 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7WTJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7WTJ _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 3350 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.603 ? 4565 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.899 ? 469 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.044 ? 484 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 593 ? f_plane_restr ? ? # _struct.entry_id 7WTJ _struct.title 'SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv286' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7WTJ _struct_keywords.text 'SARS-CoV-2, Omicron, RBD-Fab complex, VIRAL PROTEIN, IMMUNE SYSTEM-VIRAL PROTEIN complex' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM/VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 86 ? THR A 90 ? ARG H 87 THR H 91 5 ? 5 HELX_P HELX_P2 AA2 PHE C 9 ? ASN C 14 ? PHE E 338 ASN E 343 1 ? 6 HELX_P HELX_P3 AA3 SER C 20 ? TRP C 24 ? SER E 349 TRP E 353 5 ? 5 HELX_P HELX_P4 AA4 ASP C 35 ? TYR C 40 ? ASP E 364 TYR E 369 5 ? 6 HELX_P HELX_P5 AA5 ASP C 76 ? ALA C 82 ? ASP E 405 ALA E 411 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 95 SG ? ? H CYS 22 H CYS 96 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? B CYS 21 SG ? ? ? 1_555 B CYS 88 SG ? ? L CYS 22 L CYS 89 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? C CYS 7 SG ? ? ? 1_555 C CYS 32 SG ? ? E CYS 336 E CYS 361 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf4 disulf ? ? C CYS 50 SG ? ? ? 1_555 C CYS 103 SG ? ? E CYS 379 E CYS 432 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf5 disulf ? ? C CYS 62 SG ? ? ? 1_555 C CYS 196 SG ? ? E CYS 391 E CYS 525 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf6 disulf ? ? C CYS 151 SG ? ? ? 1_555 C CYS 159 SG ? ? E CYS 480 E CYS 488 1_555 ? ? ? ? ? ? ? 2.032 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 5 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 2 ? AA7 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 2 ? VAL A 4 ? GLN H 3 VAL H 5 AA1 2 SER A 16 ? SER A 24 ? SER H 17 SER H 25 AA1 3 THR A 77 ? SER A 83 ? THR H 78 SER H 84 AA1 4 VAL A 67 ? ARG A 71 ? VAL H 68 ARG H 72 AA2 1 GLY A 56 ? TYR A 59 ? GLY H 57 TYR H 60 AA2 2 PRO A 44 ? ASN A 51 ? PRO H 45 ASN H 52 AA2 3 ILE A 33 ? GLN A 38 ? ILE H 34 GLN H 39 AA2 4 ALA A 91 ? CYS A 95 ? ALA H 92 CYS H 96 AA2 5 THR A 114 ? VAL A 116 ? THR H 115 VAL H 117 AA3 1 VAL B 17 ? SER B 22 ? VAL L 18 SER L 23 AA3 2 SER B 70 ? ILE B 75 ? SER L 71 ILE L 76 AA3 3 SER B 63 ? SER B 67 ? SER L 64 SER L 68 AA4 1 LYS B 45 ? ILE B 48 ? LYS L 46 ILE L 49 AA4 2 TYR B 34 ? GLN B 38 ? TYR L 35 GLN L 39 AA4 3 ASP B 85 ? ALA B 89 ? ASP L 86 ALA L 90 AA5 1 ASP C 69 ? ARG C 74 ? ASP E 398 ARG E 403 AA5 2 PRO C 178 ? VAL C 183 ? PRO E 507 VAL E 512 AA5 3 VAL C 104 ? ASN C 108 ? VAL E 433 ASN E 437 AA6 1 LEU C 123 ? ARG C 125 ? LEU E 452 ARG E 454 AA6 2 LEU C 163 ? SER C 165 ? LEU E 492 SER E 494 AA7 1 TYR C 144 ? GLN C 145 ? TYR E 473 GLN E 474 AA7 2 CYS C 159 ? TYR C 160 ? CYS E 488 TYR E 489 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 4 ? N VAL H 5 O LYS A 22 ? O LYS H 23 AA1 2 3 N VAL A 19 ? N VAL H 20 O MET A 80 ? O MET H 81 AA1 3 4 O TYR A 79 ? O TYR H 80 N THR A 70 ? N THR H 71 AA2 1 2 O SER A 58 ? O SER H 59 N ILE A 49 ? N ILE H 50 AA2 2 3 O MET A 47 ? O MET H 48 N TRP A 35 ? N TRP H 36 AA2 3 4 N VAL A 36 ? N VAL H 37 O TYR A 94 ? O TYR H 95 AA2 4 5 N TYR A 93 ? N TYR H 94 O THR A 114 ? O THR H 115 AA3 1 2 N ILE B 19 ? N ILE L 20 O LEU B 73 ? O LEU L 74 AA3 2 3 O ALA B 74 ? O ALA L 75 N SER B 63 ? N SER L 64 AA4 1 2 O LEU B 47 ? O LEU L 48 N TRP B 35 ? N TRP L 36 AA4 2 3 N TYR B 36 ? N TYR L 37 O TYR B 87 ? O TYR L 88 AA5 1 2 N ILE C 73 ? N ILE E 402 O TYR C 179 ? O TYR E 508 AA5 2 3 O VAL C 182 ? O VAL E 511 N ILE C 105 ? N ILE E 434 AA6 1 2 N TYR C 124 ? N TYR E 453 O ARG C 164 ? O ARG E 493 AA7 1 2 N TYR C 144 ? N TYR E 473 O TYR C 160 ? O TYR E 489 # _atom_sites.entry_id 7WTJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 2 2 VAL VAL H . n A 1 2 GLN 2 3 3 GLN GLN H . n A 1 3 LEU 3 4 4 LEU LEU H . n A 1 4 VAL 4 5 5 VAL VAL H . n A 1 5 GLN 5 6 6 GLN GLN H . n A 1 6 SER 6 7 7 SER SER H . n A 1 7 GLY 7 8 8 GLY GLY H . n A 1 8 ALA 8 9 9 ALA ALA H . n A 1 9 GLU 9 10 10 GLU GLU H . n A 1 10 VAL 10 11 11 VAL VAL H . n A 1 11 LYS 11 12 12 LYS LYS H . n A 1 12 LYS 12 13 13 LYS LYS H . n A 1 13 PRO 13 14 14 PRO PRO H . n A 1 14 GLY 14 15 15 GLY GLY H . n A 1 15 ALA 15 16 16 ALA ALA H . n A 1 16 SER 16 17 17 SER SER H . n A 1 17 VAL 17 18 18 VAL VAL H . n A 1 18 LYS 18 19 19 LYS LYS H . n A 1 19 VAL 19 20 20 VAL VAL H . n A 1 20 SER 20 21 21 SER SER H . n A 1 21 CYS 21 22 22 CYS CYS H . n A 1 22 LYS 22 23 23 LYS LYS H . n A 1 23 ALA 23 24 24 ALA ALA H . n A 1 24 SER 24 25 25 SER SER H . n A 1 25 GLY 25 26 26 GLY GLY H . n A 1 26 TYR 26 27 27 TYR TYR H . n A 1 27 THR 27 28 28 THR THR H . n A 1 28 PHE 28 29 29 PHE PHE H . n A 1 29 SER 29 30 30 SER SER H . n A 1 30 SER 30 31 31 SER SER H . n A 1 31 TYR 31 32 32 TYR TYR H . n A 1 32 TYR 32 33 33 TYR TYR H . n A 1 33 ILE 33 34 34 ILE ILE H . n A 1 34 HIS 34 35 35 HIS HIS H . n A 1 35 TRP 35 36 36 TRP TRP H . n A 1 36 VAL 36 37 37 VAL VAL H . n A 1 37 ARG 37 38 38 ARG ARG H . n A 1 38 GLN 38 39 39 GLN GLN H . n A 1 39 ALA 39 40 40 ALA ALA H . n A 1 40 PRO 40 41 41 PRO PRO H . n A 1 41 GLY 41 42 42 GLY GLY H . n A 1 42 GLN 42 43 43 GLN GLN H . n A 1 43 GLY 43 44 44 GLY GLY H . n A 1 44 PRO 44 45 45 PRO PRO H . n A 1 45 GLU 45 46 46 GLU GLU H . n A 1 46 TRP 46 47 47 TRP TRP H . n A 1 47 MET 47 48 48 MET MET H . n A 1 48 ALA 48 49 49 ALA ALA H . n A 1 49 ILE 49 50 50 ILE ILE H . n A 1 50 ILE 50 51 51 ILE ILE H . n A 1 51 ASN 51 52 52 ASN ASN H . n A 1 52 PRO 52 53 53 PRO PRO H . n A 1 53 GLY 53 54 54 GLY GLY H . n A 1 54 ASP 54 55 55 ASP ASP H . n A 1 55 GLY 55 56 56 GLY GLY H . n A 1 56 GLY 56 57 57 GLY GLY H . n A 1 57 ALA 57 58 58 ALA ALA H . n A 1 58 SER 58 59 59 SER SER H . n A 1 59 TYR 59 60 60 TYR TYR H . n A 1 60 ALA 60 61 61 ALA ALA H . n A 1 61 GLN 61 62 62 GLN GLN H . n A 1 62 LYS 62 63 63 LYS LYS H . n A 1 63 PHE 63 64 64 PHE PHE H . n A 1 64 GLN 64 65 65 GLN GLN H . n A 1 65 GLY 65 66 66 GLY GLY H . n A 1 66 ARG 66 67 67 ARG ARG H . n A 1 67 VAL 67 68 68 VAL VAL H . n A 1 68 THR 68 69 69 THR THR H . n A 1 69 LEU 69 70 70 LEU LEU H . n A 1 70 THR 70 71 71 THR THR H . n A 1 71 ARG 71 72 72 ARG ARG H . n A 1 72 ASP 72 73 73 ASP ASP H . n A 1 73 THR 73 74 74 THR THR H . n A 1 74 SER 74 75 75 SER SER H . n A 1 75 THR 75 76 76 THR THR H . n A 1 76 SER 76 77 77 SER SER H . n A 1 77 THR 77 78 78 THR THR H . n A 1 78 LEU 78 79 79 LEU LEU H . n A 1 79 TYR 79 80 80 TYR TYR H . n A 1 80 MET 80 81 81 MET MET H . n A 1 81 GLU 81 82 82 GLU GLU H . n A 1 82 LEU 82 83 83 LEU LEU H . n A 1 83 SER 83 84 84 SER SER H . n A 1 84 SER 84 85 85 SER SER H . n A 1 85 LEU 85 86 86 LEU LEU H . n A 1 86 ARG 86 87 87 ARG ARG H . n A 1 87 SER 87 88 88 SER SER H . n A 1 88 GLU 88 89 89 GLU GLU H . n A 1 89 ASP 89 90 90 ASP ASP H . n A 1 90 THR 90 91 91 THR THR H . n A 1 91 ALA 91 92 92 ALA ALA H . n A 1 92 VAL 92 93 93 VAL VAL H . n A 1 93 TYR 93 94 94 TYR TYR H . n A 1 94 TYR 94 95 95 TYR TYR H . n A 1 95 CYS 95 96 96 CYS CYS H . n A 1 96 ALA 96 97 97 ALA ALA H . n A 1 97 ARG 97 98 98 ARG ARG H . n A 1 98 ALA 98 99 99 ALA ALA H . n A 1 99 GLU 99 100 100 GLU GLU H . n A 1 100 GLY 100 101 101 GLY GLY H . n A 1 101 SER 101 102 102 SER SER H . n A 1 102 SER 102 103 103 SER SER H . n A 1 103 TRP 103 104 104 TRP TRP H . n A 1 104 LEU 104 105 105 LEU LEU H . n A 1 105 GLY 105 106 106 GLY GLY H . n A 1 106 TRP 106 107 107 TRP TRP H . n A 1 107 PHE 107 108 108 PHE PHE H . n A 1 108 ASP 108 109 109 ASP ASP H . n A 1 109 PRO 109 110 110 PRO PRO H . n A 1 110 TRP 110 111 111 TRP TRP H . n A 1 111 GLY 111 112 112 GLY GLY H . n A 1 112 GLN 112 113 113 GLN GLN H . n A 1 113 GLY 113 114 114 GLY GLY H . n A 1 114 THR 114 115 115 THR THR H . n A 1 115 LEU 115 116 116 LEU LEU H . n A 1 116 VAL 116 117 117 VAL VAL H . n A 1 117 THR 117 118 118 THR THR H . n A 1 118 VAL 118 119 119 VAL VAL H . n B 2 1 SER 1 2 2 SER SER L . n B 2 2 VAL 2 3 3 VAL VAL L . n B 2 3 LEU 3 4 4 LEU LEU L . n B 2 4 THR 4 5 5 THR THR L . n B 2 5 GLN 5 6 6 GLN GLN L . n B 2 6 PRO 6 7 7 PRO PRO L . n B 2 7 PRO 7 8 8 PRO PRO L . n B 2 8 SER 8 9 9 SER SER L . n B 2 9 ALA 9 10 10 ALA ALA L . n B 2 10 SER 10 11 11 SER SER L . n B 2 11 GLY 11 12 12 GLY GLY L . n B 2 12 THR 12 13 13 THR THR L . n B 2 13 PRO 13 14 14 PRO PRO L . n B 2 14 GLY 14 15 15 GLY GLY L . n B 2 15 GLN 15 16 16 GLN GLN L . n B 2 16 ARG 16 17 17 ARG ARG L . n B 2 17 VAL 17 18 18 VAL VAL L . n B 2 18 THR 18 19 19 THR THR L . n B 2 19 ILE 19 20 20 ILE ILE L . n B 2 20 SER 20 21 21 SER SER L . n B 2 21 CYS 21 22 22 CYS CYS L . n B 2 22 SER 22 23 23 SER SER L . n B 2 23 GLY 23 24 24 GLY GLY L . n B 2 24 SER 24 25 25 SER SER L . n B 2 25 SER 25 26 26 SER SER L . n B 2 26 SER 26 27 27 SER SER L . n B 2 27 ASN 27 28 28 ASN ASN L . n B 2 28 ILE 28 29 29 ILE ILE L . n B 2 29 GLY 29 30 30 GLY GLY L . n B 2 30 SER 30 31 31 SER SER L . n B 2 31 ASN 31 32 32 ASN ASN L . n B 2 32 TYR 32 33 33 TYR TYR L . n B 2 33 VAL 33 34 34 VAL VAL L . n B 2 34 TYR 34 35 35 TYR TYR L . n B 2 35 TRP 35 36 36 TRP TRP L . n B 2 36 TYR 36 37 37 TYR TYR L . n B 2 37 GLN 37 38 38 GLN GLN L . n B 2 38 GLN 38 39 39 GLN GLN L . n B 2 39 LEU 39 40 40 LEU LEU L . n B 2 40 PRO 40 41 41 PRO PRO L . n B 2 41 GLY 41 42 42 GLY GLY L . n B 2 42 THR 42 43 43 THR THR L . n B 2 43 ALA 43 44 44 ALA ALA L . n B 2 44 PRO 44 45 45 PRO PRO L . n B 2 45 LYS 45 46 46 LYS LYS L . n B 2 46 LEU 46 47 47 LEU LEU L . n B 2 47 LEU 47 48 48 LEU LEU L . n B 2 48 ILE 48 49 49 ILE ILE L . n B 2 49 TYR 49 50 50 TYR TYR L . n B 2 50 ARG 50 51 51 ARG ARG L . n B 2 51 ASN 51 52 52 ASN ASN L . n B 2 52 ASN 52 53 53 ASN ASN L . n B 2 53 GLN 53 54 54 GLN GLN L . n B 2 54 ARG 54 55 55 ARG ARG L . n B 2 55 PRO 55 56 56 PRO PRO L . n B 2 56 SER 56 57 57 SER SER L . n B 2 57 GLY 57 58 58 GLY GLY L . n B 2 58 VAL 58 59 59 VAL VAL L . n B 2 59 PRO 59 60 60 PRO PRO L . n B 2 60 ASP 60 61 61 ASP ASP L . n B 2 61 ARG 61 62 62 ARG ARG L . n B 2 62 PHE 62 63 63 PHE PHE L . n B 2 63 SER 63 64 64 SER SER L . n B 2 64 GLY 64 65 65 GLY GLY L . n B 2 65 SER 65 66 66 SER SER L . n B 2 66 ARG 66 67 67 ARG ARG L . n B 2 67 SER 67 68 68 SER SER L . n B 2 68 GLY 68 69 69 GLY GLY L . n B 2 69 THR 69 70 70 THR THR L . n B 2 70 SER 70 71 71 SER SER L . n B 2 71 ALA 71 72 72 ALA ALA L . n B 2 72 SER 72 73 73 SER SER L . n B 2 73 LEU 73 74 74 LEU LEU L . n B 2 74 ALA 74 75 75 ALA ALA L . n B 2 75 ILE 75 76 76 ILE ILE L . n B 2 76 SER 76 77 77 SER SER L . n B 2 77 GLY 77 78 78 GLY GLY L . n B 2 78 LEU 78 79 79 LEU LEU L . n B 2 79 ARG 79 80 80 ARG ARG L . n B 2 80 SER 80 81 81 SER SER L . n B 2 81 GLU 81 82 82 GLU GLU L . n B 2 82 ASP 82 83 83 ASP ASP L . n B 2 83 GLU 83 84 84 GLU GLU L . n B 2 84 ALA 84 85 85 ALA ALA L . n B 2 85 ASP 85 86 86 ASP ASP L . n B 2 86 TYR 86 87 87 TYR TYR L . n B 2 87 TYR 87 88 88 TYR TYR L . n B 2 88 CYS 88 89 89 CYS CYS L . n B 2 89 ALA 89 90 90 ALA ALA L . n B 2 90 ALA 90 91 91 ALA ALA L . n B 2 91 TRP 91 92 92 TRP TRP L . n B 2 92 ASP 92 93 93 ASP ASP L . n B 2 93 ASP 93 94 94 ASP ASP L . n B 2 94 GLY 94 95 95 GLY GLY L . n B 2 95 LEU 95 96 96 LEU LEU L . n B 2 96 SER 96 97 97 SER SER L . n B 2 97 GLY 97 98 98 GLY GLY L . n B 2 98 SER 98 99 99 SER SER L . n B 2 99 GLY 99 100 100 GLY GLY L . n B 2 100 TRP 100 101 101 TRP TRP L . n B 2 101 VAL 101 102 102 VAL VAL L . n B 2 102 PHE 102 103 103 PHE PHE L . n B 2 103 GLY 103 104 104 GLY GLY L . n B 2 104 GLY 104 105 105 GLY GLY L . n B 2 105 GLY 105 106 106 GLY GLY L . n B 2 106 THR 106 107 107 THR THR L . n B 2 107 LYS 107 108 108 LYS LYS L . n B 2 108 LEU 108 109 109 LEU LEU L . n B 2 109 THR 109 110 110 THR THR L . n C 3 1 PRO 1 330 ? ? ? E . n C 3 2 ASN 2 331 ? ? ? E . n C 3 3 ILE 3 332 332 ILE ILE E . n C 3 4 THR 4 333 333 THR THR E . n C 3 5 ASN 5 334 334 ASN ASN E . n C 3 6 LEU 6 335 335 LEU LEU E . n C 3 7 CYS 7 336 336 CYS CYS E . n C 3 8 PRO 8 337 337 PRO PRO E . n C 3 9 PHE 9 338 338 PHE PHE E . n C 3 10 ASP 10 339 339 ASP ASP E . n C 3 11 GLU 11 340 340 GLU GLU E . n C 3 12 VAL 12 341 341 VAL VAL E . n C 3 13 PHE 13 342 342 PHE PHE E . n C 3 14 ASN 14 343 343 ASN ASN E . n C 3 15 ALA 15 344 344 ALA ALA E . n C 3 16 THR 16 345 345 THR THR E . n C 3 17 ARG 17 346 346 ARG ARG E . n C 3 18 PHE 18 347 347 PHE PHE E . n C 3 19 ALA 19 348 348 ALA ALA E . n C 3 20 SER 20 349 349 SER SER E . n C 3 21 VAL 21 350 350 VAL VAL E . n C 3 22 TYR 22 351 351 TYR TYR E . n C 3 23 ALA 23 352 352 ALA ALA E . n C 3 24 TRP 24 353 353 TRP TRP E . n C 3 25 ASN 25 354 354 ASN ASN E . n C 3 26 ARG 26 355 355 ARG ARG E . n C 3 27 LYS 27 356 356 LYS LYS E . n C 3 28 ARG 28 357 357 ARG ARG E . n C 3 29 ILE 29 358 358 ILE ILE E . n C 3 30 SER 30 359 359 SER SER E . n C 3 31 ASN 31 360 360 ASN ASN E . n C 3 32 CYS 32 361 361 CYS CYS E . n C 3 33 VAL 33 362 362 VAL VAL E . n C 3 34 ALA 34 363 363 ALA ALA E . n C 3 35 ASP 35 364 364 ASP ASP E . n C 3 36 TYR 36 365 365 TYR TYR E . n C 3 37 SER 37 366 366 SER SER E . n C 3 38 VAL 38 367 367 VAL VAL E . n C 3 39 LEU 39 368 368 LEU LEU E . n C 3 40 TYR 40 369 369 TYR TYR E . n C 3 41 ASN 41 370 370 ASN ASN E . n C 3 42 LEU 42 371 371 LEU LEU E . n C 3 43 ALA 43 372 372 ALA ALA E . n C 3 44 PRO 44 373 373 PRO PRO E . n C 3 45 PHE 45 374 374 PHE PHE E . n C 3 46 PHE 46 375 375 PHE PHE E . n C 3 47 THR 47 376 376 THR THR E . n C 3 48 PHE 48 377 377 PHE PHE E . n C 3 49 LYS 49 378 378 LYS LYS E . n C 3 50 CYS 50 379 379 CYS CYS E . n C 3 51 TYR 51 380 380 TYR TYR E . n C 3 52 GLY 52 381 381 GLY GLY E . n C 3 53 VAL 53 382 382 VAL VAL E . n C 3 54 SER 54 383 383 SER SER E . n C 3 55 PRO 55 384 384 PRO PRO E . n C 3 56 THR 56 385 385 THR THR E . n C 3 57 LYS 57 386 386 LYS LYS E . n C 3 58 LEU 58 387 387 LEU LEU E . n C 3 59 ASN 59 388 388 ASN ASN E . n C 3 60 ASP 60 389 389 ASP ASP E . n C 3 61 LEU 61 390 390 LEU LEU E . n C 3 62 CYS 62 391 391 CYS CYS E . n C 3 63 PHE 63 392 392 PHE PHE E . n C 3 64 THR 64 393 393 THR THR E . n C 3 65 ASN 65 394 394 ASN ASN E . n C 3 66 VAL 66 395 395 VAL VAL E . n C 3 67 TYR 67 396 396 TYR TYR E . n C 3 68 ALA 68 397 397 ALA ALA E . n C 3 69 ASP 69 398 398 ASP ASP E . n C 3 70 SER 70 399 399 SER SER E . n C 3 71 PHE 71 400 400 PHE PHE E . n C 3 72 VAL 72 401 401 VAL VAL E . n C 3 73 ILE 73 402 402 ILE ILE E . n C 3 74 ARG 74 403 403 ARG ARG E . n C 3 75 GLY 75 404 404 GLY GLY E . n C 3 76 ASP 76 405 405 ASP ASP E . n C 3 77 GLU 77 406 406 GLU GLU E . n C 3 78 VAL 78 407 407 VAL VAL E . n C 3 79 ARG 79 408 408 ARG ARG E . n C 3 80 GLN 80 409 409 GLN GLN E . n C 3 81 ILE 81 410 410 ILE ILE E . n C 3 82 ALA 82 411 411 ALA ALA E . n C 3 83 PRO 83 412 412 PRO PRO E . n C 3 84 GLY 84 413 413 GLY GLY E . n C 3 85 GLN 85 414 414 GLN GLN E . n C 3 86 THR 86 415 415 THR THR E . n C 3 87 GLY 87 416 416 GLY GLY E . n C 3 88 ASN 88 417 417 ASN ASN E . n C 3 89 ILE 89 418 418 ILE ILE E . n C 3 90 ALA 90 419 419 ALA ALA E . n C 3 91 ASP 91 420 420 ASP ASP E . n C 3 92 TYR 92 421 421 TYR TYR E . n C 3 93 ASN 93 422 422 ASN ASN E . n C 3 94 TYR 94 423 423 TYR TYR E . n C 3 95 LYS 95 424 424 LYS LYS E . n C 3 96 LEU 96 425 425 LEU LEU E . n C 3 97 PRO 97 426 426 PRO PRO E . n C 3 98 ASP 98 427 427 ASP ASP E . n C 3 99 ASP 99 428 428 ASP ASP E . n C 3 100 PHE 100 429 429 PHE PHE E . n C 3 101 THR 101 430 430 THR THR E . n C 3 102 GLY 102 431 431 GLY GLY E . n C 3 103 CYS 103 432 432 CYS CYS E . n C 3 104 VAL 104 433 433 VAL VAL E . n C 3 105 ILE 105 434 434 ILE ILE E . n C 3 106 ALA 106 435 435 ALA ALA E . n C 3 107 TRP 107 436 436 TRP TRP E . n C 3 108 ASN 108 437 437 ASN ASN E . n C 3 109 SER 109 438 438 SER SER E . n C 3 110 ASN 110 439 439 ASN ASN E . n C 3 111 LYS 111 440 440 LYS LYS E . n C 3 112 LEU 112 441 441 LEU LEU E . n C 3 113 ASP 113 442 442 ASP ASP E . n C 3 114 SER 114 443 443 SER SER E . n C 3 115 LYS 115 444 444 LYS LYS E . n C 3 116 VAL 116 445 445 VAL VAL E . n C 3 117 SER 117 446 446 SER SER E . n C 3 118 GLY 118 447 447 GLY GLY E . n C 3 119 ASN 119 448 448 ASN ASN E . n C 3 120 TYR 120 449 449 TYR TYR E . n C 3 121 ASN 121 450 450 ASN ASN E . n C 3 122 TYR 122 451 451 TYR TYR E . n C 3 123 LEU 123 452 452 LEU LEU E . n C 3 124 TYR 124 453 453 TYR TYR E . n C 3 125 ARG 125 454 454 ARG ARG E . n C 3 126 LEU 126 455 455 LEU LEU E . n C 3 127 PHE 127 456 456 PHE PHE E . n C 3 128 ARG 128 457 457 ARG ARG E . n C 3 129 LYS 129 458 458 LYS LYS E . n C 3 130 SER 130 459 459 SER SER E . n C 3 131 ASN 131 460 460 ASN ASN E . n C 3 132 LEU 132 461 461 LEU LEU E . n C 3 133 LYS 133 462 462 LYS LYS E . n C 3 134 PRO 134 463 463 PRO PRO E . n C 3 135 PHE 135 464 464 PHE PHE E . n C 3 136 GLU 136 465 465 GLU GLU E . n C 3 137 ARG 137 466 466 ARG ARG E . n C 3 138 ASP 138 467 467 ASP ASP E . n C 3 139 ILE 139 468 468 ILE ILE E . n C 3 140 SER 140 469 469 SER SER E . n C 3 141 THR 141 470 470 THR THR E . n C 3 142 GLU 142 471 471 GLU GLU E . n C 3 143 ILE 143 472 472 ILE ILE E . n C 3 144 TYR 144 473 473 TYR TYR E . n C 3 145 GLN 145 474 474 GLN GLN E . n C 3 146 ALA 146 475 475 ALA ALA E . n C 3 147 GLY 147 476 476 GLY GLY E . n C 3 148 ASN 148 477 477 ASN ASN E . n C 3 149 LYS 149 478 478 LYS LYS E . n C 3 150 PRO 150 479 479 PRO PRO E . n C 3 151 CYS 151 480 480 CYS CYS E . n C 3 152 ASN 152 481 481 ASN ASN E . n C 3 153 GLY 153 482 482 GLY GLY E . n C 3 154 VAL 154 483 483 VAL VAL E . n C 3 155 ALA 155 484 484 ALA ALA E . n C 3 156 GLY 156 485 485 GLY GLY E . n C 3 157 PHE 157 486 486 PHE PHE E . n C 3 158 ASN 158 487 487 ASN ASN E . n C 3 159 CYS 159 488 488 CYS CYS E . n C 3 160 TYR 160 489 489 TYR TYR E . n C 3 161 PHE 161 490 490 PHE PHE E . n C 3 162 PRO 162 491 491 PRO PRO E . n C 3 163 LEU 163 492 492 LEU LEU E . n C 3 164 ARG 164 493 493 ARG ARG E . n C 3 165 SER 165 494 494 SER SER E . n C 3 166 TYR 166 495 495 TYR TYR E . n C 3 167 SER 167 496 496 SER SER E . n C 3 168 PHE 168 497 497 PHE PHE E . n C 3 169 ARG 169 498 498 ARG ARG E . n C 3 170 PRO 170 499 499 PRO PRO E . n C 3 171 THR 171 500 500 THR THR E . n C 3 172 TYR 172 501 501 TYR TYR E . n C 3 173 GLY 173 502 502 GLY GLY E . n C 3 174 VAL 174 503 503 VAL VAL E . n C 3 175 GLY 175 504 504 GLY GLY E . n C 3 176 HIS 176 505 505 HIS HIS E . n C 3 177 GLN 177 506 506 GLN GLN E . n C 3 178 PRO 178 507 507 PRO PRO E . n C 3 179 TYR 179 508 508 TYR TYR E . n C 3 180 ARG 180 509 509 ARG ARG E . n C 3 181 VAL 181 510 510 VAL VAL E . n C 3 182 VAL 182 511 511 VAL VAL E . n C 3 183 VAL 183 512 512 VAL VAL E . n C 3 184 LEU 184 513 513 LEU LEU E . n C 3 185 SER 185 514 514 SER SER E . n C 3 186 PHE 186 515 515 PHE PHE E . n C 3 187 GLU 187 516 516 GLU GLU E . n C 3 188 LEU 188 517 517 LEU LEU E . n C 3 189 LEU 189 518 518 LEU LEU E . n C 3 190 HIS 190 519 519 HIS HIS E . n C 3 191 ALA 191 520 520 ALA ALA E . n C 3 192 PRO 192 521 521 PRO PRO E . n C 3 193 ALA 193 522 522 ALA ALA E . n C 3 194 THR 194 523 523 THR THR E . n C 3 195 VAL 195 524 524 VAL VAL E . n C 3 196 CYS 196 525 525 CYS CYS E . n C 3 197 GLY 197 526 526 GLY GLY E . n C 3 198 PRO 198 527 527 PRO PRO E . n C 3 199 LYS 199 528 528 LYS LYS E . n C 3 200 LYS 200 529 ? ? ? E . n C 3 201 SER 201 530 ? ? ? E . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email wangjun_fu@163.com _pdbx_contact_author.name_first Wangjun _pdbx_contact_author.name_last Fu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7145-1739 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-12-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 7WTJ _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7WTJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 339195 _em_3d_reconstruction.resolution 4.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 ? 'SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv286' 'MULTIPLE SOURCES' COMPLEX '1, 2, 3' ? ? 2 1 ? 'Fab XGv286' RECOMBINANT COMPLEX 1,2 ? ? 3 1 ? 'SARS-CoV-2 Omicron variant spike RBD' RECOMBINANT COMPLEX 3 ? ? # _em_imaging.id 1 _em_imaging.entry_id 7WTJ _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN' _em_imaging.mode 'DARK FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 1800 _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7WTJ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7WTJ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CA E SER 438 ? ? CB E SER 438 ? ? 1.396 1.525 -0.129 0.015 N 2 1 CA E SER 443 ? ? CB E SER 443 ? ? 1.378 1.525 -0.147 0.015 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 E _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 391 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 E _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 391 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 E _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 391 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 121.77 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 7.57 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP H 90 ? ? -97.80 35.55 2 1 SER L 27 ? ? 67.31 -0.34 3 1 ARG L 51 ? ? -37.59 143.97 4 1 ASN L 52 ? ? -65.59 89.47 5 1 ASN L 53 ? ? -170.20 -162.39 6 1 SER L 57 ? ? -132.26 -39.98 7 1 ALA L 85 ? ? -163.19 -169.19 8 1 THR E 333 ? ? -160.96 -166.76 9 1 PRO E 337 ? ? -81.08 46.49 10 1 PRO E 373 ? ? -80.36 48.67 11 1 LYS E 386 ? ? -92.06 50.66 12 1 ASP E 428 ? ? -97.26 37.39 13 1 LEU E 441 ? ? -124.06 -59.68 14 1 ASN E 448 ? ? -166.39 96.86 15 1 TYR E 449 ? ? -93.47 53.43 16 1 ASN E 477 ? ? -91.79 51.54 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 CYS _pdbx_validate_peptide_omega.auth_asym_id_1 E _pdbx_validate_peptide_omega.auth_seq_id_1 391 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PHE _pdbx_validate_peptide_omega.auth_asym_id_2 E _pdbx_validate_peptide_omega.auth_seq_id_2 392 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -149.70 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 H GLU 10 ? CG ? A GLU 9 CG 2 1 Y 1 H GLU 10 ? CD ? A GLU 9 CD 3 1 Y 1 H GLU 10 ? OE1 ? A GLU 9 OE1 4 1 Y 1 H GLU 10 ? OE2 ? A GLU 9 OE2 5 1 Y 1 H LYS 13 ? CG ? A LYS 12 CG 6 1 Y 1 H LYS 13 ? CD ? A LYS 12 CD 7 1 Y 1 H LYS 13 ? CE ? A LYS 12 CE 8 1 Y 1 H LYS 13 ? NZ ? A LYS 12 NZ 9 1 Y 1 H GLN 43 ? CG ? A GLN 42 CG 10 1 Y 1 H GLN 43 ? CD ? A GLN 42 CD 11 1 Y 1 H GLN 43 ? OE1 ? A GLN 42 OE1 12 1 Y 1 H GLN 43 ? NE2 ? A GLN 42 NE2 13 1 Y 1 H LYS 63 ? CG ? A LYS 62 CG 14 1 Y 1 H LYS 63 ? CD ? A LYS 62 CD 15 1 Y 1 H LYS 63 ? CE ? A LYS 62 CE 16 1 Y 1 H LYS 63 ? NZ ? A LYS 62 NZ 17 1 Y 1 H ARG 72 ? CG ? A ARG 71 CG 18 1 Y 1 H ARG 72 ? CD ? A ARG 71 CD 19 1 Y 1 H ARG 72 ? NE ? A ARG 71 NE 20 1 Y 1 H ARG 72 ? CZ ? A ARG 71 CZ 21 1 Y 1 H ARG 72 ? NH1 ? A ARG 71 NH1 22 1 Y 1 H ARG 72 ? NH2 ? A ARG 71 NH2 23 1 Y 1 H TYR 94 ? CG ? A TYR 93 CG 24 1 Y 1 H TYR 94 ? CD1 ? A TYR 93 CD1 25 1 Y 1 H TYR 94 ? CD2 ? A TYR 93 CD2 26 1 Y 1 H TYR 94 ? CE1 ? A TYR 93 CE1 27 1 Y 1 H TYR 94 ? CE2 ? A TYR 93 CE2 28 1 Y 1 H TYR 94 ? CZ ? A TYR 93 CZ 29 1 Y 1 H TYR 94 ? OH ? A TYR 93 OH 30 1 Y 1 L LYS 108 ? CG ? B LYS 107 CG 31 1 Y 1 L LYS 108 ? CD ? B LYS 107 CD 32 1 Y 1 L LYS 108 ? CE ? B LYS 107 CE 33 1 Y 1 L LYS 108 ? NZ ? B LYS 107 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 E PRO 330 ? C PRO 1 2 1 Y 1 E ASN 331 ? C ASN 2 3 1 Y 1 E LYS 529 ? C LYS 200 4 1 Y 1 E SER 530 ? C SER 201 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 2 1 ? ? 9606 ? ? 'Homo sapiens' ? ? 3 2 ? ? 2697049 ? ? 'Severe acute respiratory syndrome coronavirus 2' ? ? # loop_ _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain 2 1 ? 9606 'Homo sapiens' ? ? 3 2 ? 9606 'Homo sapiens' ? ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 BASE (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #